Query psy14445
Match_columns 252
No_of_seqs 139 out of 1331
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 20:02:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0184|consensus 100.0 1.6E-67 3.5E-72 430.5 22.9 250 1-251 1-252 (254)
2 PTZ00246 proteasome subunit al 100.0 2.7E-62 5.7E-67 425.4 30.8 242 6-247 3-249 (253)
3 cd03750 proteasome_alpha_type_ 100.0 1.5E-61 3.1E-66 414.5 29.3 225 8-236 1-226 (227)
4 PRK03996 proteasome subunit al 100.0 2.1E-61 4.6E-66 417.0 29.9 235 1-238 3-238 (241)
5 cd03751 proteasome_alpha_type_ 100.0 1E-60 2.3E-65 405.0 26.6 210 6-216 2-212 (212)
6 cd03752 proteasome_alpha_type_ 100.0 5.4E-60 1.2E-64 401.2 26.8 211 6-216 1-213 (213)
7 KOG0176|consensus 100.0 3E-60 6.5E-65 381.6 20.5 228 5-237 5-239 (241)
8 cd03755 proteasome_alpha_type_ 100.0 4.8E-59 1E-63 393.7 26.4 206 8-216 1-207 (207)
9 TIGR03633 arc_protsome_A prote 100.0 1.7E-58 3.7E-63 394.8 28.2 221 7-230 2-223 (224)
10 cd03754 proteasome_alpha_type_ 100.0 2.6E-58 5.6E-63 391.3 26.1 209 7-216 1-215 (215)
11 cd03749 proteasome_alpha_type_ 100.0 4.3E-58 9.3E-63 389.0 26.6 207 8-217 1-211 (211)
12 cd03756 proteasome_alpha_arche 100.0 1.2E-57 2.7E-62 386.2 27.0 209 7-217 1-210 (211)
13 COG0638 PRE1 20S proteasome, a 100.0 1.6E-56 3.4E-61 384.8 29.1 229 6-239 1-232 (236)
14 cd01911 proteasome_alpha prote 100.0 7.3E-57 1.6E-61 380.9 25.7 208 8-216 1-209 (209)
15 cd03753 proteasome_alpha_type_ 100.0 2.3E-56 4.9E-61 379.0 26.2 207 8-216 1-213 (213)
16 KOG0178|consensus 100.0 1.3E-56 2.9E-61 363.7 23.4 241 5-245 2-247 (249)
17 KOG0181|consensus 100.0 2E-55 4.3E-60 353.0 18.7 226 6-237 4-231 (233)
18 KOG0182|consensus 100.0 2E-54 4.3E-59 351.3 24.2 231 5-238 6-241 (246)
19 KOG0183|consensus 100.0 5.7E-55 1.2E-59 355.0 19.1 229 6-239 2-233 (249)
20 KOG0863|consensus 100.0 1.1E-49 2.4E-54 327.3 22.3 233 6-243 4-240 (264)
21 TIGR03691 20S_bact_alpha prote 100.0 2E-46 4.2E-51 320.4 25.2 205 24-236 17-228 (228)
22 TIGR03690 20S_bact_beta protea 100.0 4.3E-45 9.4E-50 311.0 25.5 205 33-241 1-216 (219)
23 cd03758 proteasome_beta_type_2 100.0 3.1E-45 6.6E-50 306.3 23.6 187 35-225 2-190 (193)
24 cd03760 proteasome_beta_type_4 100.0 4E-45 8.7E-50 306.5 23.2 189 33-225 1-194 (197)
25 cd03759 proteasome_beta_type_3 100.0 8.7E-45 1.9E-49 304.0 24.0 183 33-219 2-187 (195)
26 PTZ00488 Proteasome subunit be 100.0 1.3E-44 2.9E-49 312.5 25.1 204 30-241 35-240 (247)
27 cd03761 proteasome_beta_type_5 100.0 1.5E-44 3.2E-49 301.0 23.9 183 35-224 1-185 (188)
28 cd03757 proteasome_beta_type_1 100.0 7.7E-44 1.7E-48 302.0 23.3 185 31-219 5-200 (212)
29 cd03765 proteasome_beta_bacter 100.0 5.6E-43 1.2E-47 299.7 25.9 183 36-219 2-200 (236)
30 TIGR03634 arc_protsome_B prote 100.0 3.6E-43 7.9E-48 291.7 23.7 181 34-219 1-183 (185)
31 cd03762 proteasome_beta_type_6 100.0 2.2E-42 4.8E-47 287.8 24.1 184 35-225 1-186 (188)
32 PF00227 Proteasome: Proteasom 100.0 2.3E-42 4.9E-47 287.4 22.6 186 31-216 1-190 (190)
33 cd03764 proteasome_beta_archea 100.0 6.9E-42 1.5E-46 284.8 24.5 185 35-227 1-187 (188)
34 cd03763 proteasome_beta_type_7 100.0 7.1E-42 1.5E-46 285.1 24.2 183 35-225 1-185 (189)
35 cd01912 proteasome_beta protea 100.0 2.2E-41 4.7E-46 281.8 23.9 181 35-219 1-183 (189)
36 cd01906 proteasome_protease_Hs 100.0 6E-41 1.3E-45 277.0 23.8 180 35-216 1-182 (182)
37 KOG0177|consensus 100.0 5E-37 1.1E-41 246.0 17.3 189 35-227 2-192 (200)
38 KOG0174|consensus 100.0 1.3E-36 2.9E-41 244.2 15.5 203 30-238 15-219 (224)
39 KOG0175|consensus 100.0 1E-34 2.3E-39 242.3 18.8 196 32-234 69-266 (285)
40 KOG0179|consensus 100.0 1.2E-34 2.7E-39 235.5 18.6 193 31-228 26-231 (235)
41 KOG0173|consensus 100.0 4E-34 8.6E-39 238.3 16.8 183 29-218 32-217 (271)
42 KOG0185|consensus 100.0 8.3E-32 1.8E-36 222.4 15.0 205 11-219 12-230 (256)
43 PRK05456 ATP-dependent proteas 100.0 1.3E-30 2.8E-35 213.3 18.8 163 34-213 1-169 (172)
44 cd01901 Ntn_hydrolase The Ntn 100.0 1.3E-29 2.8E-34 203.4 21.7 160 35-198 1-163 (164)
45 cd01913 protease_HslV Protease 100.0 7.2E-30 1.6E-34 207.7 17.0 161 35-213 1-168 (171)
46 KOG0180|consensus 100.0 1.8E-29 4E-34 199.6 17.9 184 32-219 6-192 (204)
47 TIGR03692 ATP_dep_HslV ATP-dep 100.0 6.5E-29 1.4E-33 202.1 18.1 162 35-213 1-168 (171)
48 PF10584 Proteasome_A_N: Prote 99.6 2E-15 4.4E-20 81.0 2.3 23 8-30 1-23 (23)
49 COG3484 Predicted proteasome-t 99.0 9.3E-09 2E-13 84.4 12.3 211 35-248 2-241 (255)
50 COG5405 HslV ATP-dependent pro 98.9 1.5E-08 3.2E-13 80.4 11.4 153 33-202 3-161 (178)
51 PF09894 DUF2121: Uncharacteri 94.7 0.3 6.4E-06 40.5 9.0 47 170-218 131-179 (194)
52 COG4079 Uncharacterized protei 91.9 3.1 6.7E-05 35.8 10.9 160 35-228 2-190 (293)
53 KOG3361|consensus 72.9 5.9 0.00013 30.9 3.9 44 149-192 71-114 (157)
54 smart00481 POLIIIAc DNA polyme 62.8 10 0.00022 25.3 3.2 32 13-44 6-38 (67)
55 PF14804 Jag_N: Jag N-terminus 61.5 14 0.0003 24.0 3.4 35 184-225 5-39 (52)
56 PF07499 RuvA_C: RuvA, C-termi 45.1 15 0.00032 23.1 1.5 33 164-196 12-45 (47)
57 PF02811 PHP: PHP domain; Int 35.9 41 0.00088 26.3 3.1 31 13-43 7-38 (175)
58 COG3946 VirJ Type IV secretory 32.1 1.9E+02 0.004 27.3 6.9 33 106-142 303-335 (456)
59 cd06404 PB1_aPKC PB1 domain is 31.3 1.6E+02 0.0035 21.1 5.1 53 181-240 17-69 (83)
60 PF06057 VirJ: Bacterial virul 30.5 64 0.0014 26.9 3.4 34 105-142 44-77 (192)
61 COG4831 Roadblock/LC7 domain [ 30.5 21 0.00046 26.3 0.5 9 14-22 19-27 (109)
62 PRK08868 flagellar protein Fla 29.3 2.8E+02 0.0062 22.0 6.7 31 210-240 101-131 (144)
63 PRK07328 histidinol-phosphatas 26.3 76 0.0016 27.5 3.4 31 13-43 10-40 (269)
64 PRK06361 hypothetical protein; 25.6 79 0.0017 26.2 3.3 31 13-44 3-33 (212)
65 TIGR01856 hisJ_fam histidinol 25.5 75 0.0016 27.3 3.2 31 13-43 7-37 (253)
66 COG0279 GmhA Phosphoheptose is 24.9 89 0.0019 25.6 3.2 35 15-49 116-151 (176)
67 PRK14065 exodeoxyribonuclease 24.3 1.7E+02 0.0037 21.0 4.2 32 170-201 32-63 (86)
68 COG1387 HIS2 Histidinol phosph 23.9 84 0.0018 26.9 3.2 28 13-41 9-36 (237)
69 PF04539 Sigma70_r3: Sigma-70 22.6 1.7E+02 0.0037 19.7 4.0 32 88-119 3-34 (78)
70 PF02609 Exonuc_VII_S: Exonucl 22.3 1.9E+02 0.0042 18.4 4.0 30 173-202 9-38 (53)
71 PF08140 Cuticle_1: Crustacean 21.1 1.4E+02 0.0029 18.4 2.7 29 14-49 5-33 (40)
72 COG1334 FlaG Uncharacterized f 20.5 3.9E+02 0.0084 20.5 5.8 51 188-238 49-107 (120)
73 COG2425 Uncharacterized protei 20.3 2.6E+02 0.0056 26.5 5.8 92 144-239 272-392 (437)
74 PF05113 DUF693: Protein of un 20.1 2.5E+02 0.0054 24.9 5.2 57 134-193 98-157 (314)
No 1
>KOG0184|consensus
Probab=100.00 E-value=1.6e-67 Score=430.48 Aligned_cols=250 Identities=64% Similarity=1.015 Sum_probs=244.5
Q ss_pred CCCCCCCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ec
Q psy14445 1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SG 79 (252)
Q Consensus 1 ms~~~~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG 79 (252)
||||.+|||+..++|||+||+||||||+|||.+|+|+|||||||||||++||..+++++.+...+|||.|++||+|+ +|
T Consensus 1 MSsIGtGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaG 80 (254)
T KOG0184|consen 1 MSSIGTGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAG 80 (254)
T ss_pred CCcccccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceec
Q psy14445 80 LISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHG 159 (252)
Q Consensus 80 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~ 159 (252)
+.+|.+.+..++|.++..|+.+|+.|+|...++++++++.|.||.++..||||++.|+++||. +|||||.++|+|.++.
T Consensus 81 l~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~ 159 (254)
T KOG0184|consen 81 LIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYG 159 (254)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999996 9999999999999999
Q ss_pred ccEEEecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHH
Q psy14445 160 YFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYA 239 (252)
Q Consensus 160 ~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~ 239 (252)
|+++|+|.|.|.+++.|||....+|+++|+++.+.+.|+.++|+.+.+.|+|||+|+..+|+|.|+.+|.+++++..+++
T Consensus 160 Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~~~a 239 (254)
T KOG0184|consen 160 YKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAEKYA 239 (254)
T ss_pred eeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCC-CCCC
Q psy14445 240 KASLQDSD-SDND 251 (252)
Q Consensus 240 ~~~~~~~~-~~~~ 251 (252)
...++.+| |+++
T Consensus 240 ~~s~~~~d~sd~~ 252 (254)
T KOG0184|consen 240 KASLDEEDESDIY 252 (254)
T ss_pred Hhhhccccchhhc
Confidence 99998888 6664
No 2
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.7e-62 Score=425.40 Aligned_cols=242 Identities=31% Similarity=0.492 Sum_probs=223.9
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCC-CceeEEEecCeeEEe-ecchhh
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPG-ANKRIFHVDTHIGLG-SGLISA 83 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~-~~~Ki~~i~~~i~~~-sG~~~D 83 (252)
++||+++|+|||||||+|||||+||+++|+|+|||+++||||||+|++.++++++++ +.+|||+|+++++|+ +|..+|
T Consensus 3 ~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 82 (253)
T PTZ00246 3 RRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTAD 82 (253)
T ss_pred CccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHH
Confidence 479999999999999999999999999999999999999999999999999998855 689999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEE
Q psy14445 84 GRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGC 163 (252)
Q Consensus 84 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~ 163 (252)
++.+.+.+|.++..|++.+++++|++.+++.++..+|.|+|+++.|||+|++||+|||+++||+||.+||+|++.+++++
T Consensus 83 ~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~ 162 (253)
T PTZ00246 83 ANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKAT 162 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEE
Confidence 99999999999999999999999999999999999999999999999999999999996589999999999999999999
Q ss_pred EecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecC---CCeEEecChhHHHHHHHHHH
Q psy14445 164 AIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKT---NGKFEMVPQSFLEECENYAK 240 (252)
Q Consensus 164 a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~---~~~~~~~~~~~~~~~~~~~~ 240 (252)
|+|+|+..++++||++|+++|+++||++++++||..+.++...+++.+||++|+++. +..|+.+++++|++++....
T Consensus 163 a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~~~ 242 (253)
T PTZ00246 163 AIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKKVT 242 (253)
T ss_pred EECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999997655555789999999852 34589999999999998755
Q ss_pred hcccCCC
Q psy14445 241 ASLQDSD 247 (252)
Q Consensus 241 ~~~~~~~ 247 (252)
..-..|+
T Consensus 243 ~~~~~~~ 249 (253)
T PTZ00246 243 QEYAKEN 249 (253)
T ss_pred hhhhhhc
Confidence 4434443
No 3
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-61 Score=414.54 Aligned_cols=225 Identities=34% Similarity=0.524 Sum_probs=211.9
Q ss_pred CCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhHHH
Q psy14445 8 YDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQ 86 (252)
Q Consensus 8 yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~~~ 86 (252)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++..+++.+||++|++|++|+ +|..+|++.
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 8999999999999999999999999999999999999999999999997766677899999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEec
Q psy14445 87 LAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIG 166 (252)
Q Consensus 87 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G 166 (252)
+.+.+|.+++.|++.+++++|++.++++|++.+|.|+++++.|||++++||+|||+ .||+||++||+|++.+++++|+|
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~G~~~~~~~~a~G 159 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPSGSYFTWKATAIG 159 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEC
Confidence 99999999999999999999999999999999999999999999999999999998 79999999999999999999999
Q ss_pred CChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHH
Q psy14445 167 KAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECE 236 (252)
Q Consensus 167 ~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~ 236 (252)
+|++.++++||++|+++||++||++++++||+.+.++. .+..++||++|+++ ++ ++.++++++++++
T Consensus 160 ~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~-l~~~~iev~iv~~~-~~-~~~~~~~ei~~~~ 226 (227)
T cd03750 160 KNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQ-MTEKNIEIGICGET-KG-FRLLTPAEIKDYL 226 (227)
T ss_pred CCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECC-CC-EEECCHHHHHHHh
Confidence 99999999999999999999999999999999988652 23457999999975 45 7788888888876
No 4
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2.1e-61 Score=417.04 Aligned_cols=235 Identities=35% Similarity=0.565 Sum_probs=222.9
Q ss_pred CCCCCCCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ec
Q psy14445 1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SG 79 (252)
Q Consensus 1 ms~~~~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG 79 (252)
||++.++||.++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.++...++.+||++|++|++|+ ||
T Consensus 3 ~~~~~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG 82 (241)
T PRK03996 3 MQPQQMGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAG 82 (241)
T ss_pred CCccccccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcc
Confidence 89999999999999999999999999999999999999999999999999999997766677899999999999999 99
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceec
Q psy14445 80 LISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHG 159 (252)
Q Consensus 80 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~ 159 (252)
..+|++.+.++++.++..|+++++++++++.+++++++.+|.|+++++.|||++++||||||+ .||+||.+||+|++.+
T Consensus 83 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~~~~ 161 (241)
T PRK03996 83 LVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYLE 161 (241)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCCeec
Confidence 999999999999999999999999999999999999999999999999999999999999998 7899999999999999
Q ss_pred ccEEEecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHH
Q psy14445 160 YFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENY 238 (252)
Q Consensus 160 ~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~ 238 (252)
++++|+|.|+..++++||+.|+++|+++||++++++||+.+.++ ...++.+||+||+++ ++.++.++.++++++++.
T Consensus 162 ~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~-~~~~~~~~~~ei~~~~~~ 238 (241)
T PRK03996 162 YKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVE-TKKFRKLSVEEIEKYLEK 238 (241)
T ss_pred ceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECC-CCcEEECCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876 344568999999986 445899999999998865
No 5
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-60 Score=405.05 Aligned_cols=210 Identities=69% Similarity=1.140 Sum_probs=201.7
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhH
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAG 84 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~ 84 (252)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++.+...++.+|||+|++|++|+ +|..+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 81 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADG 81 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHhH
Confidence 679999999999999999999999999999999999999999999999988777777889999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEE
Q psy14445 85 RQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCA 164 (252)
Q Consensus 85 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a 164 (252)
+.+.+++|.+++.|++++++++|++.++++|++++|.|+++++.|||++++||+|||+ +||+||.+||+|++.+++++|
T Consensus 82 ~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~~~a 160 (212)
T cd03751 82 RHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYGYFGCA 160 (212)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCCCCEEeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999997 799999999999999999999
Q ss_pred ecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEE
Q psy14445 165 IGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWV 216 (252)
Q Consensus 165 ~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i 216 (252)
+|+|+..++++||++|+++||++||+++++++|+.++++...+..+|||+++
T Consensus 161 ~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 161 IGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred ECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999999999999999999866666678999874
No 6
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.4e-60 Score=401.18 Aligned_cols=211 Identities=35% Similarity=0.548 Sum_probs=202.1
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCC-CceeEEEecCeeEEe-ecchhh
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPG-ANKRIFHVDTHIGLG-SGLISA 83 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~-~~~Ki~~i~~~i~~~-sG~~~D 83 (252)
++||+++|+|||||||+|||||+||+++|+|+|||+++||||||+|++.++++++.+ +.+|||+|++|++|+ ||..+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 479999999999999999999999999999999999999999999999999988754 889999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEE
Q psy14445 84 GRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGC 163 (252)
Q Consensus 84 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~ 163 (252)
++.+.+++|.+++.|+++++++++++.+++.|+..+|.|+++++.|||++++||+|||++.||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~ 160 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKAT 160 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999997579999999999999999999
Q ss_pred EecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEE
Q psy14445 164 AIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWV 216 (252)
Q Consensus 164 a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i 216 (252)
|+|+++..++++||++|+++||++||++++++||+.+.++....+.++||+||
T Consensus 161 a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 161 AIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999999999999999999876566678999875
No 7
>KOG0176|consensus
Probab=100.00 E-value=3e-60 Score=381.59 Aligned_cols=228 Identities=37% Similarity=0.593 Sum_probs=214.9
Q ss_pred CCCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhh
Q psy14445 5 GAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISA 83 (252)
Q Consensus 5 ~~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D 83 (252)
++.||+.+++|||||||||||||.+|++.|+|.|||+.++|||||++||.++.++.+++.+||++|++||+|+ ||+.+|
T Consensus 5 rseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~aD 84 (241)
T KOG0176|consen 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIAD 84 (241)
T ss_pred HHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccccccc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccC-----CccCceeeEEEEEEeCCCCceEEEECCCCcee
Q psy14445 84 GRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYS-----MVRPFGASLLLASHDKTDGPSLYVVDPSGVSH 158 (252)
Q Consensus 84 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~-----~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~ 158 (252)
++.+++++|.++++|++.|+++++++.+.+.++++...|.... -.|||||++|+||+|+ .||+||..||+|++.
T Consensus 85 arTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf~ 163 (241)
T KOG0176|consen 85 ARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTFI 163 (241)
T ss_pred hHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCceE
Confidence 9999999999999999999999999999999999998776432 2499999999999998 899999999999999
Q ss_pred cccEEEecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc-cCCCcceEEEEEEEecCCCeEEecChhHHHHHHH
Q psy14445 159 GYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDE-LKDKHFELELAWVGEKTNGKFEMVPQSFLEECEN 237 (252)
Q Consensus 159 ~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~-~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~ 237 (252)
+|++-|+|+|+.-+.+.|++.|+++|+++||+.+++..|+.++++ ++. .++||++|+++ +.|+++.+++++++++
T Consensus 164 ~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~~--~Nvev~~vt~e--~~f~~~t~EE~~~~i~ 239 (241)
T KOG0176|consen 164 RYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLNS--NNVEVAVVTPE--GEFHIYTPEEVEQVIK 239 (241)
T ss_pred EecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcCc--cceEEEEEccc--CceEecCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999965 554 46999999985 6699999999998875
No 8
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-59 Score=393.73 Aligned_cols=206 Identities=34% Similarity=0.525 Sum_probs=196.8
Q ss_pred CCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhHHH
Q psy14445 8 YDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQ 86 (252)
Q Consensus 8 yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~~~ 86 (252)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.++..+++.+||++|++|++|+ ||..+|++.
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARV 80 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHH
Confidence 8999999999999999999999999999999999999999999999887766667789999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEec
Q psy14445 87 LAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIG 166 (252)
Q Consensus 87 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G 166 (252)
+.+++|.+++.|+++++++|+++.+++++++++|.|+++++.|||++++||+|||+++||+||.+||+|++.+++++|+|
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G 160 (207)
T cd03755 81 LINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIG 160 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEEC
Confidence 99999999999999999999999999999999999999999999999999999997679999999999999999999999
Q ss_pred CChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEE
Q psy14445 167 KAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWV 216 (252)
Q Consensus 167 ~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i 216 (252)
+|+..++++||++|+++|+++||++++++||..+.+ .+ ..++||+++
T Consensus 161 ~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~-~~--~~~~e~~~~ 207 (207)
T cd03755 161 RNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ-SG--SKNIELAVM 207 (207)
T ss_pred CCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC-CC--CCeEEEEEC
Confidence 999999999999999999999999999999999997 33 347999875
No 9
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.7e-58 Score=394.80 Aligned_cols=221 Identities=38% Similarity=0.628 Sum_probs=206.5
Q ss_pred CCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhHH
Q psy14445 7 GYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGR 85 (252)
Q Consensus 7 ~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~~ 85 (252)
+||.++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.++...++.+||++|+++++|+ ||..+|++
T Consensus 2 ~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 81 (224)
T TIGR03633 2 GYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADAR 81 (224)
T ss_pred CCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhHH
Confidence 69999999999999999999999999999999999999999999999987666677889999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEe
Q psy14445 86 QLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAI 165 (252)
Q Consensus 86 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~ 165 (252)
.+.+.++.++..|+++++++++++.+++++++.+|.|+++++.|||++++||+|+|+ ++|+||.+||.|++.+++++|+
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~ 160 (224)
T TIGR03633 82 VLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATAI 160 (224)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEEE
Confidence 999999999999999999999999999999999999999999999999999999997 8999999999999999999999
Q ss_pred cCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChh
Q psy14445 166 GKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQS 230 (252)
Q Consensus 166 G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~ 230 (252)
|+|+..++++||+.|+++|+++||++++++||..+.++ ...+..+||++|+++ +..|+.++++
T Consensus 161 G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~d-~~~~~~i~i~ii~~~-g~~~~~~~~~ 223 (224)
T TIGR03633 161 GAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVED-KLTPENVEVAYITVE-DKKFRKLSVE 223 (224)
T ss_pred CCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEEcC-CCcEEECCCC
Confidence 99999999999999999999999999999999999874 233457999999986 3336666654
No 10
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-58 Score=391.33 Aligned_cols=209 Identities=36% Similarity=0.570 Sum_probs=197.0
Q ss_pred CCCCCccccCCCCccchhhhHHHHHhc-CCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhH
Q psy14445 7 GYDLSASQFSPDGRVFQVEYAQKAVEN-SSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAG 84 (252)
Q Consensus 7 ~yd~~~t~fspeGrl~Qveya~~av~~-G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~ 84 (252)
+||+++|+|||||||+|||||+||+++ |+|+|||+++||||||+|+|.+.+++.+++.+|||+|++|++|+ ||..+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 599999999999999999999999975 77999999999999999999998877767889999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEE
Q psy14445 85 RQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCA 164 (252)
Q Consensus 85 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a 164 (252)
+.+.+++|.++..|++++++++|++.+|+++++++|.|+++++.|||++++||||||+++||+||++||+|++.+++++|
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a 160 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATA 160 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999976799999999999999999999
Q ss_pred ecCChhhhhHHHHHhcCCC--C--CHHHHHHHHHHHHHHHhhccCCCcceEEEEEE
Q psy14445 165 IGKAKQNAKTEIEKLKLST--L--SMEQLAKEAARIIYVVHDELKDKHFELELAWV 216 (252)
Q Consensus 165 ~G~g~~~~~~~Le~~~~~~--~--s~~eai~la~~al~~~~~~~~~~~~~iev~~i 216 (252)
+|+|++.++++||++|+++ | |++||++++++||..+.++.. +.+++||+||
T Consensus 161 ~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~-~~~~~ei~~~ 215 (215)
T cd03754 161 AGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDF-KATEIEVGVV 215 (215)
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEC
Confidence 9999999999999999985 7 999999999999999986522 2467999985
No 11
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.3e-58 Score=388.97 Aligned_cols=207 Identities=35% Similarity=0.511 Sum_probs=195.1
Q ss_pred CCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhHHH
Q psy14445 8 YDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQ 86 (252)
Q Consensus 8 yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~~~ 86 (252)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.++. ++.+|||+|++|++|+ ||..+|++.
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~~D~~~ 78 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELS--SYQKKIFKVDDHIGIAIAGLTADARV 78 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccC--CccccEEEeCCCEEEEEEeChHhHHH
Confidence 8999999999999999999999999999999999999999999999887743 4569999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEec
Q psy14445 87 LAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIG 166 (252)
Q Consensus 87 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G 166 (252)
+.+++|.+++.|+++++++++++.+++++++.+|.++++.+.|||+|++||+|||+ .||+||++||+|++.+++++|+|
T Consensus 79 l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~G~~~~~~~~a~G 157 (211)
T cd03749 79 LSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPSGNYFEYKATSIG 157 (211)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCCcCEeeeeEEEEC
Confidence 99999999999999999999999999999999999999999999999999999997 79999999999999999999999
Q ss_pred CChhhhhHHHHHhcC--CCCCHHHHHHHHHHHHHHHhhccC-CCcceEEEEEEE
Q psy14445 167 KAKQNAKTEIEKLKL--STLSMEQLAKEAARIIYVVHDELK-DKHFELELAWVG 217 (252)
Q Consensus 167 ~g~~~~~~~Le~~~~--~~~s~~eai~la~~al~~~~~~~~-~~~~~iev~~i~ 217 (252)
+|++.++++||++|+ ++|+++||+++++++|+.+.++.. .++.+|||++|+
T Consensus 158 ~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 158 ARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 999999999999998 699999999999999999986422 445679999973
No 12
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-57 Score=386.22 Aligned_cols=209 Identities=38% Similarity=0.647 Sum_probs=199.5
Q ss_pred CCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhHH
Q psy14445 7 GYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGR 85 (252)
Q Consensus 7 ~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~~ 85 (252)
+||+++|+|||||||+|+|||+||+++|+|+|||+++||||||+|++.+.++...++.+||++|+++++|+ ||..+|++
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 80 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADAR 80 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 59999999999999999999999999999999999999999999999987766677899999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEe
Q psy14445 86 QLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAI 165 (252)
Q Consensus 86 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~ 165 (252)
.+.+.++.+++.|+++++++++++.+++++++.+|.|+++++.|||++++||+|||+ +||+||.+||+|++.+++++|+
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a~ 159 (211)
T cd03756 81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATAI 159 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEEE
Confidence 999999999999999999999999999999999999999999999999999999998 7999999999999999999999
Q ss_pred cCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEE
Q psy14445 166 GKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVG 217 (252)
Q Consensus 166 G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~ 217 (252)
|+|++.++++||+.|+|+|+++||++++++||..+.++.. .+.++||++|+
T Consensus 160 G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 160 GSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 9999999999999999999999999999999999986633 44679999986
No 13
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-56 Score=384.83 Aligned_cols=229 Identities=36% Similarity=0.549 Sum_probs=213.2
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcC-CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchh
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENS-STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLIS 82 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G-~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~ 82 (252)
.+||+.+++||||||++|+|||.+++++| +|+|||+++||||||+|||.++++++ .++.+|||+|+|||+|+ +|..+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 36999999999999999999999999886 99999999999999999999999887 45699999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccE
Q psy14445 83 AGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFG 162 (252)
Q Consensus 83 D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~ 162 (252)
|++.+++++|.+++.|++.++++|+++.+++++++++|.++++ .|||++++||||+|+ ++|+||++||+|++.++++
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~ 157 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKA 157 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC-CCCeEEEECCCCceeecCE
Confidence 9999999999999999999999999999999999999999986 899999999999999 9999999999999999999
Q ss_pred EEecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHH
Q psy14445 163 CAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYA 239 (252)
Q Consensus 163 ~a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~ 239 (252)
+|+|+|++.++++||+.|+++|+++||++++++||+.+.++......+++|++|+++ ++ ++.++.++++.++...
T Consensus 158 ~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~-~~-~~~~~~~~~~~~~~~~ 232 (236)
T COG0638 158 TAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKD-EG-FRKLDGEEIKKLLDDL 232 (236)
T ss_pred EEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcC-CC-eEEcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999864544456799999986 45 8888888877766543
No 14
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=7.3e-57 Score=380.94 Aligned_cols=208 Identities=49% Similarity=0.752 Sum_probs=199.3
Q ss_pred CCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhHHH
Q psy14445 8 YDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQ 86 (252)
Q Consensus 8 yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~~~ 86 (252)
||+++|+|||||||+|||||++++++|+|+|||+++||||||+|++.+.++...++.+|||+|+++++|+ +|..+|++.
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 80 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARV 80 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHH
Confidence 8999999999999999999999999999999999999999999999998766567889999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEec
Q psy14445 87 LAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIG 166 (252)
Q Consensus 87 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G 166 (252)
+.+.++.++..|+++++++++++.+|+++++.+|.|+++++.|||++++||+|||+++||+||.+||.|++.+++++|+|
T Consensus 81 l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G 160 (209)
T cd01911 81 LVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIG 160 (209)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999998679999999999999999999999
Q ss_pred CChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEE
Q psy14445 167 KAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWV 216 (252)
Q Consensus 167 ~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i 216 (252)
+|+.+++++||+.|+++|+++||++++++||..+.++.. .++.+||+++
T Consensus 161 ~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 161 KGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred CCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 999999999999999999999999999999999997755 6678999874
No 15
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-56 Score=378.98 Aligned_cols=207 Identities=38% Similarity=0.593 Sum_probs=194.4
Q ss_pred CCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhHHH
Q psy14445 8 YDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQ 86 (252)
Q Consensus 8 yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~~~ 86 (252)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.++...++.+||++|++|++|+ +|..+|++.
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADART 80 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 8999999999999999999999999999999999999999999999988776677889999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc-----CCccCceeeEEEEEEeCCCCceEEEECCCCceeccc
Q psy14445 87 LAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLY-----SMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYF 161 (252)
Q Consensus 87 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~-----~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~ 161 (252)
+.+.+|.+++.|+++++++++++.++++|++.+|.|++. ++.|||++++||+|||+ +||+||.+||+|++.+++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~ 159 (213)
T cd03753 81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRCD 159 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeeccc
Confidence 999999999999999999999999999999999999874 34699999999999998 899999999999999999
Q ss_pred EEEecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEE
Q psy14445 162 GCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWV 216 (252)
Q Consensus 162 ~~a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i 216 (252)
++|+|++++.++++||++|+++|+++||++++++||+.+.++ ..++.++||++|
T Consensus 160 ~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~-~~~~~~~ei~~~ 213 (213)
T cd03753 160 AKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEE-KLNSTNVELATV 213 (213)
T ss_pred EEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEC
Confidence 999999999999999999999999999999999999999755 233456888874
No 16
>KOG0178|consensus
Probab=100.00 E-value=1.3e-56 Score=363.73 Aligned_cols=241 Identities=30% Similarity=0.417 Sum_probs=222.2
Q ss_pred CCCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchh
Q psy14445 5 GAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLIS 82 (252)
Q Consensus 5 ~~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~ 82 (252)
+..||.-.|+|||||||+|||||++++++.+|+|||..+||||||++++.+++++. ....+||++|+|||+|+ +|+.+
T Consensus 2 sr~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~ 81 (249)
T KOG0178|consen 2 SRRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTS 81 (249)
T ss_pred CcCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccc
Confidence 35699999999999999999999999999999999999999999999999999997 55789999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccE
Q psy14445 83 AGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFG 162 (252)
Q Consensus 83 D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~ 162 (252)
|+..+++.+|..++.|.++|++++|.+.|++.++++.|.|||+++.||||||+|-+|||+..|.|||+.||+|++..|++
T Consensus 82 DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka 161 (249)
T KOG0178|consen 82 DANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKA 161 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccce
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred EEecCChhhhhHHHHHhcCCCCC-HHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCC-eEEecChhHHHHHHHHHH
Q psy14445 163 CAIGKAKQNAKTEIEKLKLSTLS-MEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNG-KFEMVPQSFLEECENYAK 240 (252)
Q Consensus 163 ~a~G~g~~~~~~~Le~~~~~~~s-~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 240 (252)
.|+|.++..++.+|...|+++.. ++||+.+|++.|...++..+.....+|++.++++.+. .++++.++++..+++...
T Consensus 162 ~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~~ 241 (249)
T KOG0178|consen 162 TCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKYH 241 (249)
T ss_pred eeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHhh
Confidence 99999999999999999987754 9999999999999999775555567999999986544 377888888888887665
Q ss_pred -hcccC
Q psy14445 241 -ASLQD 245 (252)
Q Consensus 241 -~~~~~ 245 (252)
.+.++
T Consensus 242 ~~~~~~ 247 (249)
T KOG0178|consen 242 ETQRQA 247 (249)
T ss_pred hhhhhc
Confidence 44443
No 17
>KOG0181|consensus
Probab=100.00 E-value=2e-55 Score=352.99 Aligned_cols=226 Identities=35% Similarity=0.530 Sum_probs=215.5
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhH
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAG 84 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~ 84 (252)
.+|..++|+|||+|||-|+|||+.|+.+|.+.|||+-+||||||++|+..+.+.+..+.+|+++|.+||+|. ||..+|+
T Consensus 4 ~~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~ 83 (233)
T KOG0181|consen 4 FGYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDY 83 (233)
T ss_pred cccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCce
Confidence 579999999999999999999999999999999999999999999999999999888899999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEE
Q psy14445 85 RQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCA 164 (252)
Q Consensus 85 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a 164 (252)
+.+++..|+.++.|...|+++||+..|+..++..+|+|||.++.||||+++++||||+ ++|.||++||+|+++.|+++|
T Consensus 84 RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wkatA 162 (233)
T KOG0181|consen 84 RVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWKATA 162 (233)
T ss_pred eehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred ecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc-cCCCcceEEEEEEEecCCCeEEecChhHHHHHHH
Q psy14445 165 IGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDE-LKDKHFELELAWVGEKTNGKFEMVPQSFLEECEN 237 (252)
Q Consensus 165 ~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~-~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~ 237 (252)
+|.+...++++|||+|+.+|.+++++..|+..|++..+- .+. .+|||+++.. ++ |+++...+|++++.
T Consensus 163 ~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~~~--~nieigv~~~--~~-F~~lt~~eI~d~l~ 231 (233)
T KOG0181|consen 163 MGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEMTA--KNIEIGVCGE--NG-FRRLTPAEIEDYLA 231 (233)
T ss_pred hccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhcccccc--CceEEEEecC--Cc-eeecCHHHHHHHHh
Confidence 999999999999999999999999999999999999854 554 4699999885 45 88899999999874
No 18
>KOG0182|consensus
Probab=100.00 E-value=2e-54 Score=351.30 Aligned_cols=231 Identities=33% Similarity=0.530 Sum_probs=219.6
Q ss_pred CCCCCCCccccCCCCccchhhhHHHHHhc-CCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchh
Q psy14445 5 GAGYDLSASQFSPDGRVFQVEYAQKAVEN-SSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLIS 82 (252)
Q Consensus 5 ~~~yd~~~t~fspeGrl~Qveya~~av~~-G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~ 82 (252)
+.|||+++|+|||||||||||||+||+++ |-|+||++++|++|+++.|+.+.++++++....+|+|+.+|+|+ +|..+
T Consensus 6 ~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~a 85 (246)
T KOG0182|consen 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIA 85 (246)
T ss_pred cCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCCc
Confidence 57999999999999999999999999998 66999999999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccE
Q psy14445 83 AGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFG 162 (252)
Q Consensus 83 D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~ 162 (252)
|++..+.++|.++.++++.||++||++.||++++++.|.|||...+||+||.+++.|+|++.||.+|.+||.|-+..+++
T Consensus 86 Dar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kA 165 (246)
T KOG0182|consen 86 DARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKA 165 (246)
T ss_pred chHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred EEecCChhhhhHHHHHhcCCC--CCHHHHHHHHHHHHHHHhh-ccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHH
Q psy14445 163 CAIGKAKQNAKTEIEKLKLST--LSMEQLAKEAARIIYVVHD-ELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENY 238 (252)
Q Consensus 163 ~a~G~g~~~~~~~Le~~~~~~--~s~~eai~la~~al~~~~~-~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~ 238 (252)
++.|.....+.++|||+|+++ .|.+|++++++.||..+.. +++. .++||++++++ +-+|+.++.++|+++|..
T Consensus 166 taaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~--se~EVgvv~~~-~p~f~~Ls~~eie~hL~~ 241 (246)
T KOG0182|consen 166 TAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKS--SELEVGVVTVD-NPEFRILSAEEIEEHLQA 241 (246)
T ss_pred eecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCC--cceEEEEEEcC-CcceeeccHHHHHHHHHH
Confidence 999999999999999999887 6799999999999999985 3333 47999999996 666999999999999864
No 19
>KOG0183|consensus
Probab=100.00 E-value=5.7e-55 Score=355.03 Aligned_cols=229 Identities=29% Similarity=0.449 Sum_probs=215.1
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhH
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAG 84 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~ 84 (252)
++||+.+|+|||||+|+|||||++|+.+|+|+||++++|+|||+.+++...++...+...||..+++|++|+ +|+.+|+
T Consensus 2 srydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDA 81 (249)
T KOG0183|consen 2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADA 81 (249)
T ss_pred CccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccc
Confidence 349999999999999999999999999999999999999999999999999999888899999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEE
Q psy14445 85 RQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCA 164 (252)
Q Consensus 85 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a 164 (252)
+.+++++|-+|+.|+++.+.|++++.++++|+.+.|.|||..+.||||++.+|+|+|+++.|.||++||+|.+..|++.|
T Consensus 82 rilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~a 161 (249)
T KOG0183|consen 82 RILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANA 161 (249)
T ss_pred eeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999997889999999999999999999
Q ss_pred ecCChhhhhHHHHHhcCCC--CCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHH
Q psy14445 165 IGKAKQNAKTEIEKLKLST--LSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYA 239 (252)
Q Consensus 165 ~G~g~~~~~~~Le~~~~~~--~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~ 239 (252)
+|.++..+..+|||+|.+. .+..++++|++++|.++... ++.+||+++++.. +-++.++.++|+.+++.-
T Consensus 162 iGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~--~~~~~l~~~~I~~~v~~i 233 (249)
T KOG0183|consen 162 IGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS---GGKNIEVAVMKRR--KDLKMLESEEIDDIVKEI 233 (249)
T ss_pred cccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc---CCCeeEEEEEecC--CceeecCHHHHHHHHHHH
Confidence 9999999999999999866 78899999999999999864 2347999999874 338999999999887543
No 20
>KOG0863|consensus
Probab=100.00 E-value=1.1e-49 Score=327.34 Aligned_cols=233 Identities=30% Similarity=0.427 Sum_probs=213.9
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhH
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAG 84 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~ 84 (252)
-+||.++|+|||+|||+|||||++|++.|+++||+|+++.+||++-++..+.+. +.+.|||+|++|++++ +|+.+|+
T Consensus 4 nqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seLs--s~QkKi~~iD~h~g~siAGLt~Da 81 (264)
T KOG0863|consen 4 NQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSELS--SHQKKIFKIDDHIGISIAGLTADA 81 (264)
T ss_pred ccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHHH--HhhheeEecccccceEEeccCcch
Confidence 579999999999999999999999999999999999999999999998876663 4689999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEE
Q psy14445 85 RQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCA 164 (252)
Q Consensus 85 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a 164 (252)
+.+++++|.+|..+++.+++++|+..|+..|++.+|..||+.+.|||||.++++|||+ .||+||.++|+|++.++++.+
T Consensus 82 rvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~Psg~v~e~~g~s 160 (264)
T KOG0863|consen 82 RVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCPSGNVFECKGMS 160 (264)
T ss_pred HHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcCCccEEEEeeee
Confidence 9999999999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred ecCChhhhhHHHHHhc--CCCCCHHHHHHHHHHHHHHHhh-ccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHHHh
Q psy14445 165 IGKAKQNAKTEIEKLK--LSTLSMEQLAKEAARIIYVVHD-ELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKA 241 (252)
Q Consensus 165 ~G~g~~~~~~~Le~~~--~~~~s~~eai~la~~al~~~~~-~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (252)
+|+.++.++++||++. .++++.+|.|..++.||+.... +-..+..+++|++|.++ ..|.++..+.+..++.-.+.
T Consensus 161 IGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd--~pf~~~d~~~~~k~~~~~~~ 238 (264)
T KOG0863|consen 161 IGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKD--EPFTILDQKDVAKYVDLFKK 238 (264)
T ss_pred cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCC--CceEeecHHHHHHHHHHhhc
Confidence 9999999999999984 4799999999999999999983 22333457999999995 56999999999877766554
Q ss_pred cc
Q psy14445 242 SL 243 (252)
Q Consensus 242 ~~ 243 (252)
..
T Consensus 239 ~~ 240 (264)
T KOG0863|consen 239 VD 240 (264)
T ss_pred CC
Confidence 43
No 21
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=2e-46 Score=320.38 Aligned_cols=205 Identities=16% Similarity=0.158 Sum_probs=183.8
Q ss_pred hhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhc
Q psy14445 24 VEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKY 102 (252)
Q Consensus 24 veya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~ 102 (252)
-|||++|+++|+|+|||+++||||||+|++. ++.+|||+|++||+|+ +|..+|++.++++++.+++.|++.+
T Consensus 17 ~EYA~kav~~g~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~ 89 (228)
T TIGR03691 17 AELARKGIARGRSVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSY 89 (228)
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 4999999999999999999999999999962 4679999999999999 9999999999999999999999999
Q ss_pred C-CCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeC-CCCceEEEECCCCceeccc-EEEecCChhhhhHHHHHh
Q psy14445 103 G-GNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDK-TDGPSLYVVDPSGVSHGYF-GCAIGKAKQNAKTEIEKL 179 (252)
Q Consensus 103 ~-~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~-~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~ 179 (252)
+ .+++++.+|+++++.++.++ +++.|||+|++||+|||+ +.||+||.+||+|++.+++ ++|+|+|++.++++||++
T Consensus 90 ~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~ 168 (228)
T TIGR03691 90 DRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKES 168 (228)
T ss_pred CCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHh
Confidence 8 68999999998888887666 567899999999999985 4789999999999999976 899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhh--ccCCCcceEEEEEEEec-CCCeEEecChhHHHHHH
Q psy14445 180 KLSTLSMEQLAKEAARIIYVVHD--ELKDKHFELELAWVGEK-TNGKFEMVPQSFLEECE 236 (252)
Q Consensus 180 ~~~~~s~~eai~la~~al~~~~~--~~~~~~~~iev~~i~~~-~~~~~~~~~~~~~~~~~ 236 (252)
|+++||++||++++++||+.+.+ +......++||++|+++ +...|+.++++++++++
T Consensus 169 y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 169 YRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 99999999999999999999953 32334457999999974 23459999999998764
No 22
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=4.3e-45 Score=311.04 Aligned_cols=205 Identities=19% Similarity=0.194 Sum_probs=184.4
Q ss_pred cCCcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q psy14445 33 NSSTAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHL 110 (252)
Q Consensus 33 ~G~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~ 110 (252)
+|+|+|||+++||||||+|++.+++.+ .+++.+|||+|++|++|+ +|..+|++.+.+++|.+++.|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 489999999999999999999998655 477899999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCccCceeeEEEEEEeCC-CCceEEEECCCC-ceecccEEEecCChhhhhHHHHHhcCCCCCHHH
Q psy14445 111 LNERVSMYVHAYTLYSMVRPFGASLLLASHDKT-DGPSLYVVDPSG-VSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQ 188 (252)
Q Consensus 111 la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~-~gp~Ly~id~~G-~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 188 (252)
++++|++++|.++ ....|||++++||||||+. ++|+||.+||+| ++..++++|+|+|+++++++||++|+++||++|
T Consensus 81 la~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~ee 159 (219)
T TIGR03690 81 KANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDD 159 (219)
T ss_pred HHHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHH
Confidence 9999999999877 4568999999999999964 689999999999 577789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc--CCCcce-----EEEEEEEecCCCeEEecChhHHHHHHHHHHh
Q psy14445 189 LAKEAARIIYVVHDEL--KDKHFE-----LELAWVGEKTNGKFEMVPQSFLEECENYAKA 241 (252)
Q Consensus 189 ai~la~~al~~~~~~~--~~~~~~-----iev~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (252)
|++++++||..+.++. +++... +||++|++ +| ++.+++++++.+++....
T Consensus 160 ai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~--~g-~~~l~~~ei~~~~~~~~~ 216 (219)
T TIGR03690 160 ALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITA--DG-ARRVPESELEELARAIVE 216 (219)
T ss_pred HHHHHHHHHHHHHhcccccCCcccccccccEEEEEcc--Cc-eEEcCHHHHHHHHHHHHh
Confidence 9999999999999763 233222 39999975 45 899999999999976543
No 23
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.1e-45 Score=306.32 Aligned_cols=187 Identities=20% Similarity=0.243 Sum_probs=172.9
Q ss_pred CcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.+.+.+ .+++.+|||+|+++++|+ +|..+|++.+.+++|.+++.|+++++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999988775 478899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
+++++.+|.|++. + |||++++||+|||+++||+||++||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 82 ~~l~~~~~~~~~~-~-rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l 159 (193)
T cd03758 82 NFTRRELAESLRS-R-TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALEL 159 (193)
T ss_pred HHHHHHHHHHhhc-C-CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999988754 3 8999999999999768999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEEEecCCCeEE
Q psy14445 193 AARIIYVVHDELKDKHFELELAWVGEKTNGKFE 225 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~ 225 (252)
+++||+.+.++....+.++||++|+++ |.++
T Consensus 160 ~~~a~~~~~~rd~~~~~~i~i~ii~~~--g~~~ 190 (193)
T cd03758 160 MKKCIKELKKRFIINLPNFTVKVVDKD--GIRD 190 (193)
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCC--CeEe
Confidence 999999998764445567999999974 6443
No 24
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4e-45 Score=306.55 Aligned_cols=189 Identities=20% Similarity=0.143 Sum_probs=172.1
Q ss_pred cCCcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHH-HHHHhcCCCCCHH
Q psy14445 33 NSSTAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEAS-EYRSKYGGNIPLH 109 (252)
Q Consensus 33 ~G~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~-~~~~~~~~~i~~~ 109 (252)
+|+|+|||+++||||||+|+|.+.+.+ .+++.+|||+|++|++|+ +|..+|++.+++++|.+++ .|++.++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 589999999999999999999985554 477889999999999999 9999999999999999987 5678899999999
Q ss_pred HHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCC--CCCHH
Q psy14445 110 LLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLS--TLSME 187 (252)
Q Consensus 110 ~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~~ 187 (252)
.+++++++++ |+++++.|||++++||||||+++||+||++||+|++.+++++|+|+|+.+++++||+.|++ +||++
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999986 6777889999999999999976899999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEE
Q psy14445 188 QLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFE 225 (252)
Q Consensus 188 eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~ 225 (252)
||++++++||+.+.++....+..+||++|+++ |..+
T Consensus 159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~--g~~~ 194 (197)
T cd03760 159 EARALIEECMKVLYYRDARSINKYQIAVVTKE--GVEI 194 (197)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEEECCC--CEEe
Confidence 99999999999998764444567999999984 6443
No 25
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.7e-45 Score=304.04 Aligned_cols=183 Identities=16% Similarity=0.180 Sum_probs=169.5
Q ss_pred cCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q psy14445 33 NSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHL 110 (252)
Q Consensus 33 ~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~ 110 (252)
+|+|+|||+++||||||+|++.++++++ .++.+|||+|++|++|+ +|..+|++.+.+++|.+++.|+++++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6999999999999999999999999887 55789999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceeccc-EEEecCChhhhhHHHHHhcCCCCCHHHH
Q psy14445 111 LNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYF-GCAIGKAKQNAKTEIEKLKLSTLSMEQL 189 (252)
Q Consensus 111 la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~ea 189 (252)
+|++|++.++ ++ +.|||++++||||||+++||+||++||+|++..++ ++|+|+|++.++++||+.|+++||++||
T Consensus 82 la~~l~~~ly--~~--r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 157 (195)
T cd03759 82 FSSLISSLLY--EK--RFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDEL 157 (195)
T ss_pred HHHHHHHHHH--Hh--cCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHH
Confidence 9999999984 44 35799999999999976789999999999998887 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCcceEEEEEEEec
Q psy14445 190 AKEAARIIYVVHDELKDKHFELELAWVGEK 219 (252)
Q Consensus 190 i~la~~al~~~~~~~~~~~~~iev~~i~~~ 219 (252)
++++++||+.+.++....+.++||++|+++
T Consensus 158 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~ 187 (195)
T cd03759 158 FETISQALLSAVDRDALSGWGAVVYIITKD 187 (195)
T ss_pred HHHHHHHHHHHHhhCcccCCceEEEEEcCC
Confidence 999999999998764444567999999974
No 26
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.3e-44 Score=312.54 Aligned_cols=204 Identities=15% Similarity=0.158 Sum_probs=185.1
Q ss_pred HHhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14445 30 AVENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIP 107 (252)
Q Consensus 30 av~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 107 (252)
.+++|+|+|||+++||||||+|+|.+.+.++ +++.+|||+|++|++|+ +|..+|++.+.+++|.+++.|+++++++|+
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4578999999999999999999999976654 77899999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHH
Q psy14445 108 LHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSME 187 (252)
Q Consensus 108 ~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ 187 (252)
++.+|++|++++|.++ ..|+.+++||||||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|+++||++
T Consensus 115 v~~la~~ls~~l~~~R----~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~e 189 (247)
T PTZ00488 115 VAAASKILANIVWNYK----GMGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDE 189 (247)
T ss_pred HHHHHHHHHHHHHhcC----CCCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHH
Confidence 9999999999998752 224555589999997 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHHHh
Q psy14445 188 QLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKA 241 (252)
Q Consensus 188 eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (252)
||++++++||+.+.++....+..+||++|++ +| ++.+++++++++++....
T Consensus 190 Eai~l~~kal~~~~~Rd~~sg~~~ei~iI~k--~g-~~~l~~~ei~~~l~~~~~ 240 (247)
T PTZ00488 190 EAQDLGRRAIYHATFRDAYSGGAINLYHMQK--DG-WKKISADDCFDLHQKYAA 240 (247)
T ss_pred HHHHHHHHHHHHHHHhccccCCCeEEEEEcC--Cc-cEECCHHHHHHHHHHHhh
Confidence 9999999999999976445556799999997 36 799999999999987653
No 27
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-44 Score=301.01 Aligned_cols=183 Identities=19% Similarity=0.192 Sum_probs=170.9
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|++.+++.++ +++.+|||+|++|++|+ +|..+|++.+.+++|.+++.|++++++++|++.+|
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999997665 67889999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
+++++++|.+++ .||++++||||||+ +||+||++||+|++.+++++|+|+|+.+++++||+.|+++||++||+++
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 155 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDL 155 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 999999999865 48999999999997 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEEEecCCCeE
Q psy14445 193 AARIIYVVHDELKDKHFELELAWVGEKTNGKF 224 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i~~~~~~~~ 224 (252)
+++||+.+.++....+.++||++|++ +|..
T Consensus 156 ~~~~l~~~~~rd~~sg~~~~v~ii~~--~g~~ 185 (188)
T cd03761 156 ARRAIYHATHRDAYSGGNVNLYHVRE--DGWR 185 (188)
T ss_pred HHHHHHHHHHhcccCCCCeEEEEEcC--CceE
Confidence 99999999976445556799999987 4643
No 28
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.7e-44 Score=301.97 Aligned_cols=185 Identities=18% Similarity=0.174 Sum_probs=171.4
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCH
Q psy14445 31 VENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPL 108 (252)
Q Consensus 31 v~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 108 (252)
+++|+|+|||+++||||||+|++.++++++ .++.+|||+|++|++|+ +|..+|++.+.+.+|.+++.|++++++++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 468999999999999999999999999976 67899999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcC-------
Q psy14445 109 HLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKL------- 181 (252)
Q Consensus 109 ~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~------- 181 (252)
+.+++++++.++.. +.|||++++||||||++++|+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 85 ~~la~~ls~~ly~~----R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~ 160 (212)
T cd03757 85 EAIAQLLSTILYSR----RFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNV 160 (212)
T ss_pred HHHHHHHHHHHHhh----cCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcC
Confidence 99999999999642 2479999999999997578999999999999999999999999999999999974
Q ss_pred --CCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEec
Q psy14445 182 --STLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEK 219 (252)
Q Consensus 182 --~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~ 219 (252)
++||++||++++++||+.+.++....+..+||++|+++
T Consensus 161 ~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~ 200 (212)
T cd03757 161 ERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKD 200 (212)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCC
Confidence 89999999999999999999764444567999999984
No 29
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.6e-43 Score=299.72 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=166.8
Q ss_pred cEEEEEeCCEEEEEEeccccCCcccCCCceeEEEec----CeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCC-CCCHH
Q psy14445 36 TAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVD----THIGLG-SGLISAGRQLAETAKTEASEYRSKYGG-NIPLH 109 (252)
Q Consensus 36 t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~----~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~-~i~~~ 109 (252)
-+|||+++||||||+|+|.+.+++..++.+|||+|+ +||+|+ ||..+|++.+++++|.+++.|++++++ ++|++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~ 81 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMF 81 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHH
Confidence 489999999999999999999987766789999998 899999 999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHH-hcccCC-----ccCceeeEEEEEEeCCCCceEEEECCCCceecc----cEEEecCChhhhhHHHHHh
Q psy14445 110 LLNERVSMYVHA-YTLYSM-----VRPFGASLLLASHDKTDGPSLYVVDPSGVSHGY----FGCAIGKAKQNAKTEIEKL 179 (252)
Q Consensus 110 ~la~~l~~~~~~-~t~~~~-----~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~----~~~a~G~g~~~~~~~Le~~ 179 (252)
.+|+++++.++. ++|+.+ .|||+|++||+|||++.||+||++||+|++.++ +++|+|. +++++++||++
T Consensus 82 ~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~ 160 (236)
T cd03765 82 DAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRV 160 (236)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHh
Confidence 999999998654 555553 489999999999996589999999999999998 4589996 69999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEec
Q psy14445 180 KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEK 219 (252)
Q Consensus 180 ~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~ 219 (252)
|+++||++||+++|++||..+.++...++..|||++|+++
T Consensus 161 yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~ 200 (236)
T cd03765 161 ITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERD 200 (236)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECC
Confidence 9999999999999999999999775555667999999985
No 30
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.6e-43 Score=291.75 Aligned_cols=181 Identities=25% Similarity=0.342 Sum_probs=169.7
Q ss_pred CCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q psy14445 34 SSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLL 111 (252)
Q Consensus 34 G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~l 111 (252)
|+|+|||+++||||||+|++.+.+.++ +++.+|||+|+++++|+ +|..+|++.+.++++.+++.|+..+++++|++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 789999999999999999999876655 67889999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHH
Q psy14445 112 NERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAK 191 (252)
Q Consensus 112 a~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~ 191 (252)
++++++.+|.+ +.|||++++||||||+ +||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||++||++
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~ 155 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDE-EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKK 155 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeC-CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHH
Confidence 99999999876 5799999999999998 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCcceEEEEEEEec
Q psy14445 192 EAARIIYVVHDELKDKHFELELAWVGEK 219 (252)
Q Consensus 192 la~~al~~~~~~~~~~~~~iev~~i~~~ 219 (252)
++++||+.+.++....+..+||++|+++
T Consensus 156 l~~~~l~~~~~r~~~~~~~~~v~ii~~~ 183 (185)
T TIGR03634 156 LAVRAIKSAIERDVASGNGIDVAVITKD 183 (185)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEEEcCC
Confidence 9999999999764445567999999874
No 31
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.2e-42 Score=287.81 Aligned_cols=184 Identities=13% Similarity=0.115 Sum_probs=170.1
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.+.+.+. +++.+|||+|++|++|+ +|..+|++.+.+.++.+++.|+.+++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 58999999999999999999997665 66889999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
+++++.+|.++ |||++++||||||+++||+||.+||.|++.+++++++|+|+.+++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~-----~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l 155 (188)
T cd03762 81 SLFKNLCYNYK-----EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKF 155 (188)
T ss_pred HHHHHHHHhcc-----ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999998764 7999999999999767899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEEEecCCCeEE
Q psy14445 193 AARIIYVVHDELKDKHFELELAWVGEKTNGKFE 225 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~ 225 (252)
+++||+.+.++....+..+||++|+++ |..+
T Consensus 156 ~~~al~~~~~rd~~~~~~~~i~~i~~~--g~~~ 186 (188)
T cd03762 156 VKNALSLAMSRDGSSGGVIRLVIITKD--GVER 186 (188)
T ss_pred HHHHHHHHHHhccccCCCEEEEEECCC--CEEE
Confidence 999999999764455568999999974 5443
No 32
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=2.3e-42 Score=287.37 Aligned_cols=186 Identities=35% Similarity=0.484 Sum_probs=174.4
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccccCCccc--CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14445 31 VENSSTAIGLRGKDGVVIAVEKLVLSKLYD--PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIP 107 (252)
Q Consensus 31 v~~G~t~vgi~~~dgVvlaad~~~~~~~~~--~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 107 (252)
|++|+|+|||+++||||||+|++.+.+... +++.+|||+|++|++++ +|..+|++.+.++++.++..|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 579999999999999999999999976654 44479999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecc-cEEEecCChhhhhHHHHHhcCCCCCH
Q psy14445 108 LHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGY-FGCAIGKAKQNAKTEIEKLKLSTLSM 186 (252)
Q Consensus 108 ~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~ 186 (252)
++.+++.+++.++.++++.+.||+++++|+||||++++|+||.+||+|++.++ +++|+|+|+++++++||+.|+++|++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~ 160 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSH
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCH
Confidence 99999999999999999999999999999999998667999999999999999 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCcceEEEEEE
Q psy14445 187 EQLAKEAARIIYVVHDELKDKHFELELAWV 216 (252)
Q Consensus 187 ~eai~la~~al~~~~~~~~~~~~~iev~~i 216 (252)
+||++++++||+.+.++...+++++||++|
T Consensus 161 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 161 EEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999765556678999986
No 33
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.9e-42 Score=284.83 Aligned_cols=185 Identities=24% Similarity=0.343 Sum_probs=171.3
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.+++.++ +++.+||++|+++++++ +|..+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999987665 67899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
+++++.+|.+ +.|||++++||||||+ ++|+||.+||+|++.+++++|+|+|+.+++++||+.|+++|+++||+++
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l 155 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKL 155 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 9999999875 4689999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEEEecCCCeEEec
Q psy14445 193 AARIIYVVHDELKDKHFELELAWVGEKTNGKFEMV 227 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~ 227 (252)
+++||+.+.++....+.++||++|+++ | ++.+
T Consensus 156 ~~~~l~~~~~rd~~~~~~i~i~iv~~~--g-~~~~ 187 (188)
T cd03764 156 AIRAIKSAIERDSASGDGIDVVVITKD--G-YKEL 187 (188)
T ss_pred HHHHHHHHHhhcCCCCCcEEEEEECCC--C-eEeC
Confidence 999999999764445567999999874 5 5443
No 34
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.1e-42 Score=285.07 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=168.7
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.+++.++ .++.+|||+|+++++|+ +|..+|++.+.+.+|.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999998765 66889999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
++|++.+|.|+ .||+|++||||||+ +||+||.+||.|++.+++++|+|+++..++++||++|+|+||++||+++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~-~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l 154 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDY-TGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKL 154 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcC-CCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 99999998763 39999999999997 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEEEecCCCeEE
Q psy14445 193 AARIIYVVHDELKDKHFELELAWVGEKTNGKFE 225 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~ 225 (252)
+++||+.+.++....+..+||++|+++ |...
T Consensus 155 ~~~~l~~~~~rd~~~~~~~~v~ii~~~--g~~~ 185 (189)
T cd03763 155 VCEAIEAGIFNDLGSGSNVDLCVITKD--GVEY 185 (189)
T ss_pred HHHHHHHHHHhcCcCCCceEEEEEcCC--cEEE
Confidence 999999998764334457999999974 6443
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.2e-41 Score=281.76 Aligned_cols=181 Identities=22% Similarity=0.300 Sum_probs=170.7
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|++.+.++.+ +++.+|||+|+++++|+ +|..+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999987 78899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
+++++.++.+++ |||++++||||||++++|+||.+||.|++.+++++|+|.++++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~ 156 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVEL 156 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 999999988764 8999999999999767999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEEEec
Q psy14445 193 AARIIYVVHDELKDKHFELELAWVGEK 219 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i~~~ 219 (252)
+++||+.+.++....+..++|++|+++
T Consensus 157 ~~~~l~~~~~~d~~~~~~~~v~vi~~~ 183 (189)
T cd01912 157 VKKAIDSAIERDLSSGGGVDVAVITKD 183 (189)
T ss_pred HHHHHHHHHHhcCccCCcEEEEEECCC
Confidence 999999998764444567999999974
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=6e-41 Score=276.99 Aligned_cols=180 Identities=36% Similarity=0.543 Sum_probs=170.0
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|++.+.++.. +++.+|||+|+++++|+ +|..+|++.+.+.++.++..|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999999886 78899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
+++++.+|.+++. .|||++++|+||||++++|+||.+||.|++.+++++|+|+|+.+++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 158 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIEL 158 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHH
Confidence 9999999999875 79999999999999767999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEE
Q psy14445 193 AARIIYVVHDELKDKHFELELAWV 216 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i 216 (252)
+++||..+.++....++.+||++|
T Consensus 159 ~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 159 ALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999764445567888874
No 37
>KOG0177|consensus
Probab=100.00 E-value=5e-37 Score=245.98 Aligned_cols=189 Identities=15% Similarity=0.196 Sum_probs=175.3
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
.+++||++.|+|++|+||...++.++ .++.+|++.|++++.|+ +|..+|+..+.+++.+.++.|+.++|.+++|+.+|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 47999999999999999999988876 77899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
+++++.++.+.+ ..+||.|++++||+|++.||.||++|..|+..+.++++.|.++.++.++|++.|+||||.+||+++
T Consensus 82 hFtR~~La~~LR--sr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~l 159 (200)
T KOG0177|consen 82 HFTRRELAESLR--SRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDL 159 (200)
T ss_pred HHHHHHHHHHHh--cCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHH
Confidence 999999998863 468999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEEEecCCCeEEec
Q psy14445 193 AARIIYVVHDELKDKHFELELAWVGEKTNGKFEMV 227 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~ 227 (252)
..+|+.++.+|+-.+..++.|.+|+|+ |.++.-
T Consensus 160 mkKCv~El~kRlvin~~~f~v~IVdkd--Gir~~~ 192 (200)
T KOG0177|consen 160 MKKCVLELKKRLVINLPGFIVKIVDKD--GIRKLD 192 (200)
T ss_pred HHHHHHHHHHhcccCCCCcEEEEEcCC--Cceecc
Confidence 999999999985555456789999994 755543
No 38
>KOG0174|consensus
Probab=100.00 E-value=1.3e-36 Score=244.23 Aligned_cols=203 Identities=12% Similarity=0.111 Sum_probs=185.6
Q ss_pred HHhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14445 30 AVENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIP 107 (252)
Q Consensus 30 av~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 107 (252)
.+.+|+|++|+++++||||++|.|.+.|.++ .+-.+|+.+|+|+|+|| ||..+|.|.+.+.++..+..|...++.+++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 5789999999999999999999999999988 55679999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHH
Q psy14445 108 LHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSME 187 (252)
Q Consensus 108 ~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ 187 (252)
+...|+.++++++.|+. -+.+.+|+||||+..|.++|.+.-.|+..+.+++.-|+||.+++++++..|+|+|++|
T Consensus 95 v~~aA~l~r~~~Y~~re-----~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~E 169 (224)
T KOG0174|consen 95 VHTAASLFREICYNYRE-----MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLE 169 (224)
T ss_pred HHHHHHHHHHHHHhCHH-----hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHH
Confidence 99999999999988753 4889999999999899999999888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHH
Q psy14445 188 QLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENY 238 (252)
Q Consensus 188 eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~ 238 (252)
|++++..+|+..++.+...++-.|.+.+|+++ +..+++.+.+++..+.+.
T Consensus 170 E~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~-Gver~~~~~d~~~~~~v~ 219 (224)
T KOG0174|consen 170 ECVRFVKNAVSLAIERDGSSGGVIRLVIINKA-GVERRFFPGDKLGQFAVE 219 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCCEEEEEEEccC-CceEEEecCCcccccccc
Confidence 99999999999999775555567999999995 778888998887665443
No 39
>KOG0175|consensus
Probab=100.00 E-value=1e-34 Score=242.30 Aligned_cols=196 Identities=19% Similarity=0.181 Sum_probs=177.7
Q ss_pred hcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHH
Q psy14445 32 ENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLH 109 (252)
Q Consensus 32 ~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~ 109 (252)
.+|+|++|++++.|||+|+|+|.+.|.++ +..+.||.+|+++..-+ +|-.+||+++-+.+.++|++|++++++.|+|.
T Consensus 69 ~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVs 148 (285)
T KOG0175|consen 69 AHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVS 148 (285)
T ss_pred cCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehH
Confidence 47999999999999999999999999998 67899999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHH
Q psy14445 110 LLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQL 189 (252)
Q Consensus 110 ~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 189 (252)
..++.|+++++.|+-. -+.+..+|||||+ .||.||.||..|+-.+.+-.++|+|+.+|++.|+..|++||+.+||
T Consensus 149 aASKllsN~~y~YkGm----GLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA 223 (285)
T KOG0175|consen 149 AASKLLSNMVYQYKGM----GLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEA 223 (285)
T ss_pred HHHHHHHHHHhhccCc----chhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHH
Confidence 9999999999988632 4778899999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHH
Q psy14445 190 AKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEE 234 (252)
Q Consensus 190 i~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~ 234 (252)
.+|+++||..+..+...++-.+.++-|++ .|+.++-+.+.-+-
T Consensus 224 ~~L~rrAI~hAThRDaySGG~vnlyHv~e--dGW~~v~~~Dv~~L 266 (285)
T KOG0175|consen 224 YDLARRAIYHATHRDAYSGGVVNLYHVKE--DGWVKVSNTDVSEL 266 (285)
T ss_pred HHHHHHHHHHHHhcccccCceEEEEEECC--ccceecCCccHHHH
Confidence 99999999999755344444688999988 48777766665444
No 40
>KOG0179|consensus
Probab=100.00 E-value=1.2e-34 Score=235.46 Aligned_cols=193 Identities=19% Similarity=0.244 Sum_probs=175.6
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCH
Q psy14445 31 VENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPL 108 (252)
Q Consensus 31 v~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 108 (252)
..+|+|+|||++.|++|+|+|||.+.++.+ +++.+|||+++|+++++ +|.++|+..+...++..++.|+..++..|++
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~ 105 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI 105 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence 479999999999999999999999998876 78899999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHh-----c---
Q psy14445 109 HLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL-----K--- 180 (252)
Q Consensus 109 ~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~-----~--- 180 (252)
+.+|++|+..++. .++.||.+..||+|+|+++++.+|+.||.|++.+..+.|.|+++.+++|+|+.. |
T Consensus 106 ~s~A~lls~~LY~----kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e 181 (235)
T KOG0179|consen 106 HSAAQLLSTILYS----KRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLE 181 (235)
T ss_pred HHHHHHHHHHHhh----cccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccc
Confidence 9999999999964 357899999999999998999999999999999999999999999999999986 2
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecC
Q psy14445 181 ---LSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVP 228 (252)
Q Consensus 181 ---~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~ 228 (252)
++.+|+|||++|+.++|..+.+|.-..++.+||++++++ +...+.+|
T Consensus 182 ~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~-gV~~e~~~ 231 (235)
T KOG0179|consen 182 NAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKD-GVEVETLP 231 (235)
T ss_pred cCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecC-CEEEEeee
Confidence 245899999999999999999874445678999999995 55555554
No 41
>KOG0173|consensus
Probab=100.00 E-value=4e-34 Score=238.31 Aligned_cols=183 Identities=19% Similarity=0.230 Sum_probs=171.0
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCC
Q psy14445 29 KAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNI 106 (252)
Q Consensus 29 ~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 106 (252)
++.++|+|++|+.++||||+++|+|.+.|.++ .++.+||+.|.++|+|| +|..+|...+.+.+..+.++|+++.++.+
T Consensus 32 ~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~ 111 (271)
T KOG0173|consen 32 KATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKP 111 (271)
T ss_pred cccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCC
Confidence 46688999999999999999999999999987 67889999999999999 99999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCH
Q psy14445 107 PLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSM 186 (252)
Q Consensus 107 ~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 186 (252)
+|-..-+++.+.+..|.- -.++.+||+|+|. .|||||.+.|.|+....+|++.|+|+..++++||.+|+|||++
T Consensus 112 rVv~A~~mlkQ~LFrYqG-----~IgA~LiiGGvD~-TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~ 185 (271)
T KOG0173|consen 112 RVVTALRMLKQHLFRYQG-----HIGAALILGGVDP-TGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTK 185 (271)
T ss_pred ceeeHHHHHHHHHHHhcC-----cccceeEEccccC-CCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCH
Confidence 999999999999988763 4899999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-hccCCCcceEEEEEEEe
Q psy14445 187 EQLAKEAARIIYVVH-DELKDKHFELELAWVGE 218 (252)
Q Consensus 187 ~eai~la~~al~~~~-~~~~~~~~~iev~~i~~ 218 (252)
|||++|+.+|+...+ +++.++ .+|.+++|++
T Consensus 186 eea~~Lv~eAi~AGi~nDLgSG-snvdlcVI~~ 217 (271)
T KOG0173|consen 186 EEAIKLVCEAIAAGIFNDLGSG-SNVDLCVITK 217 (271)
T ss_pred HHHHHHHHHHHHhhhccccCCC-CceeEEEEeC
Confidence 999999999999976 665544 5799999996
No 42
>KOG0185|consensus
Probab=99.98 E-value=8.3e-32 Score=222.37 Aligned_cols=205 Identities=23% Similarity=0.232 Sum_probs=177.4
Q ss_pred CccccCCCCccc------hhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchh
Q psy14445 11 SASQFSPDGRVF------QVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLIS 82 (252)
Q Consensus 11 ~~t~fspeGrl~------Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~ 82 (252)
..++|.|.|.+. -+..-+.++.+|+++||+||+||||||||+..++|.+. .++.+|||+|+||++++ ||..+
T Consensus 12 a~~~f~~~~~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdis 91 (256)
T KOG0185|consen 12 APGTFYPSGSLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDIS 91 (256)
T ss_pred CCCcCcCccchhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHH
Confidence 456788875532 12222345568999999999999999999999999876 78999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceeccc
Q psy14445 83 AGRQLAETAKTEASEYR-SKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYF 161 (252)
Q Consensus 83 D~~~l~~~~r~~~~~~~-~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~ 161 (252)
|+|.+.+.|.+...+.. +..++.+.|+.++++|.+.++. +++++.|++..++|+|+|.++.|.|-.+|..|..++.+
T Consensus 92 D~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~--rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~ 169 (256)
T KOG0185|consen 92 DFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYA--RRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESP 169 (256)
T ss_pred HHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHH--hhhccCchhhheeEeeecCCCCeeEEEEeeccccccCc
Confidence 99999999998887743 4455899999999999999954 56789999999999999997889999999999999999
Q ss_pred EEEecCChhhhhHHHHHhcC---CCCCHHHHHHHHHHHHHHHh--hccCCCcceEEEEEEEec
Q psy14445 162 GCAIGKAKQNAKTEIEKLKL---STLSMEQLAKEAARIIYVVH--DELKDKHFELELAWVGEK 219 (252)
Q Consensus 162 ~~a~G~g~~~~~~~Le~~~~---~~~s~~eai~la~~al~~~~--~~~~~~~~~iev~~i~~~ 219 (252)
..|+|.|..++.++|++.|. ++++.+||.+++.+||+.+. |+... .+++|++|+++
T Consensus 170 ~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~--n~fqva~v~~e 230 (256)
T KOG0185|consen 170 VVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARAS--NEFQVATVDEE 230 (256)
T ss_pred hhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccc--cceEEEEEccc
Confidence 99999999999999999986 67999999999999999987 33333 46899999984
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.97 E-value=1.3e-30 Score=213.35 Aligned_cols=163 Identities=18% Similarity=0.159 Sum_probs=137.1
Q ss_pred CCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEe-cCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHH
Q psy14445 34 SSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHV-DTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHL 110 (252)
Q Consensus 34 G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i-~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~ 110 (252)
|+|+|||+++||||||+|+|.+.+.++ +++.+||++| +++++|+ +|..+|+|.+.+.++.+++.|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 689999999999999999999999876 7788999999 9999999 99999999999999999999882 22 466
Q ss_pred HHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecc--cEEEecCChhhhhHHHHHhcC-CCCCHH
Q psy14445 111 LNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGY--FGCAIGKAKQNAKTEIEKLKL-STLSME 187 (252)
Q Consensus 111 la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~-~~~s~~ 187 (252)
+++.+..+ ..+ ...+|+.+++|++ |. |+||.+||.|+..+. +++|+|+|+.+++++||+.|+ |+|
T Consensus 76 ~a~l~~~l-~~~---~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m--- 143 (172)
T PRK05456 76 AVELAKDW-RTD---RYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL--- 143 (172)
T ss_pred HHHHHHHH-Hhc---cCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---
Confidence 66554333 222 1236888999984 43 699999999999766 799999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhhccCCCcceEEE
Q psy14445 188 QLAKEAARIIYVVHDELKDKHFELEL 213 (252)
Q Consensus 188 eai~la~~al~~~~~~~~~~~~~iev 213 (252)
||++++++|++.+.+|...++..|+|
T Consensus 144 eA~~la~kai~~A~~Rd~~sg~~i~v 169 (172)
T PRK05456 144 SAEEIAEKALKIAADICIYTNHNITI 169 (172)
T ss_pred CHHHHHHHHHHHHHHhCeeCCCcEEE
Confidence 99999999999999774444444544
No 44
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=1.3e-29 Score=203.43 Aligned_cols=160 Identities=31% Similarity=0.463 Sum_probs=154.4
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||+|+|++.+.+... .....|++.++++++++ +|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999999887 67889999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecc-cEEEecCChhhhhHHHHHhcCCCCCHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGY-FGCAIGKAKQNAKTEIEKLKLSTLSMEQLAK 191 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~ 191 (252)
+.+++.++.+++ .||+++++||+|+|+ ++|+||.+||.|++..+ .++++|.++..+.++|++.|+++|+++|+++
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVE 156 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999887 799999999999998 89999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy14445 192 EAARIIY 198 (252)
Q Consensus 192 la~~al~ 198 (252)
++.+||.
T Consensus 157 ~~~~~l~ 163 (164)
T cd01901 157 LALKALK 163 (164)
T ss_pred HHHHHHh
Confidence 9999986
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=7.2e-30 Score=207.71 Aligned_cols=161 Identities=17% Similarity=0.110 Sum_probs=134.3
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecC-eeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDT-HIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLL 111 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~-~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~l 111 (252)
+|+|||+++||||||+|+|.+.+.++ .++.+||++|++ |++|+ +|..+|++.+.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 58999999999999999999999877 778899999999 99999 999999999999999999999988774 44
Q ss_pred HHHHHHHHHHhcccCCccCce-eeEEEEEEeCCCCceEEEECCCCceeccc--EEEecCChhhhhHHHHHhcCCC-CCHH
Q psy14445 112 NERVSMYVHAYTLYSMVRPFG-ASLLLASHDKTDGPSLYVVDPSGVSHGYF--GCAIGKAKQNAKTEIEKLKLST-LSME 187 (252)
Q Consensus 112 a~~l~~~~~~~t~~~~~rP~~-~~~iiaG~D~~~gp~Ly~id~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~~~-~s~~ 187 (252)
++.+..+ +.+ +.+|+. +.+|++++ ++||.+||.|...+.+ +.++|+|+.+++++||..|+++ ||
T Consensus 76 a~l~~~l-~~~----~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms-- 143 (171)
T cd01913 76 VELAKDW-RTD----RYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS-- 143 (171)
T ss_pred HHHHHHH-Hhc----cCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC--
Confidence 4543333 222 235655 66666544 3899999999999984 9999999999999999999995 99
Q ss_pred HHHHHHHHHHHHHhhccCCCcceEEE
Q psy14445 188 QLAKEAARIIYVVHDELKDKHFELEL 213 (252)
Q Consensus 188 eai~la~~al~~~~~~~~~~~~~iev 213 (252)
+.++|++|++.+.++...++.+|.|
T Consensus 144 -~~~la~~Av~~A~~rd~~tg~~i~~ 168 (171)
T cd01913 144 -AEEIARKALKIAADICIYTNHNITV 168 (171)
T ss_pred -HHHHHHHHHHHHHhhCcccCCCEEE
Confidence 5599999999999775555555554
No 46
>KOG0180|consensus
Probab=99.97 E-value=1.8e-29 Score=199.61 Aligned_cols=184 Identities=16% Similarity=0.162 Sum_probs=172.3
Q ss_pred hcCCcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHH
Q psy14445 32 ENSSTAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLH 109 (252)
Q Consensus 32 ~~G~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~ 109 (252)
-+|+++||+++|++|.||+|.|...... ++++.+|||+++|+++++ +|...|+|.+.++++..-..|+++.++.|.|+
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 3799999999999999999999977665 478899999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceec-ccEEEecCChhhhhHHHHHhcCCCCCHHH
Q psy14445 110 LLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHG-YFGCAIGKAKQNAKTEIEKLKLSTLSMEQ 188 (252)
Q Consensus 110 ~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 188 (252)
.++++++..+++. +.-||.+..++||.|+++.|+|..+|..|+... ..+++.|.++...+++.|..|+|||..+|
T Consensus 86 ~~s~mvS~~lYek----RfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~ 161 (204)
T KOG0180|consen 86 TFSSMVSSLLYEK----RFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDE 161 (204)
T ss_pred HHHHHHHHHHHHh----hcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHH
Confidence 9999999999764 467999999999999989999999999999874 68999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEEEEEEec
Q psy14445 189 LAKEAARIIYVVHDELKDKHFELELAWVGEK 219 (252)
Q Consensus 189 ai~la~~al~~~~~~~~~~~~~iev~~i~~~ 219 (252)
..+.+.+||.++.||...++|...|++|+|+
T Consensus 162 LFetisQa~Lna~DRDalSGwGa~vyiI~kd 192 (204)
T KOG0180|consen 162 LFETISQALLNAVDRDALSGWGAVVYIITKD 192 (204)
T ss_pred HHHHHHHHHHhHhhhhhhccCCeEEEEEccc
Confidence 9999999999999886677799999999985
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=6.5e-29 Score=202.10 Aligned_cols=162 Identities=18% Similarity=0.175 Sum_probs=132.6
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEe-cCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHV-DTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLL 111 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i-~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~l 111 (252)
+|+|||+++||||||+|+|.+.+.++ .++.+||++| ++|++|+ +|..+|++.+.++++.+++.|+++. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 58999999999999999999999887 7788999999 5999999 9999999999999999999987643 3566
Q ss_pred HHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecc--cEEEecCChhhhhHHHHHhc-CCCCCHHH
Q psy14445 112 NERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGY--FGCAIGKAKQNAKTEIEKLK-LSTLSMEQ 188 (252)
Q Consensus 112 a~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~-~~~~s~~e 188 (252)
++.++.. +.| ...+.+.+.+|++|| ++||.+||.|.+.++ +++++|+|+.+++++||..| +++|+
T Consensus 76 a~l~~~~-~~~---~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s--- 143 (171)
T TIGR03692 76 VELAKDW-RTD---RYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS--- 143 (171)
T ss_pred HHHHHHH-hhc---ccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---
Confidence 6665552 112 112234466776544 389999999999996 59999999999999999999 57777
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEE
Q psy14445 189 LAKEAARIIYVVHDELKDKHFELEL 213 (252)
Q Consensus 189 ai~la~~al~~~~~~~~~~~~~iev 213 (252)
|+++|++|++.+.++...++..|.|
T Consensus 144 a~~la~~Av~~A~~rd~~sg~~i~v 168 (171)
T TIGR03692 144 AEEIAREALKIAADICIYTNHNITI 168 (171)
T ss_pred HHHHHHHHHHHHHhhCccCCCCEEE
Confidence 9999999999999774555455544
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.55 E-value=2e-15 Score=81.01 Aligned_cols=23 Identities=74% Similarity=1.148 Sum_probs=22.3
Q ss_pred CCCCccccCCCCccchhhhHHHH
Q psy14445 8 YDLSASQFSPDGRVFQVEYAQKA 30 (252)
Q Consensus 8 yd~~~t~fspeGrl~Qveya~~a 30 (252)
||+++|+|||+|||+|||||+||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999987
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.3e-09 Score=84.39 Aligned_cols=211 Identities=17% Similarity=0.117 Sum_probs=145.7
Q ss_pred CcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEec---Cee-EEe-ecchhhHHHHHHHHHHHHHH--HHHhcCCCCC
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVD---THI-GLG-SGLISAGRQLAETAKTEASE--YRSKYGGNIP 107 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~---~~i-~~~-sG~~~D~~~l~~~~r~~~~~--~~~~~~~~i~ 107 (252)
+-|||++-..|.|+++|+|.+.|.--.+...|+|... +.+ +++ +|..+-.|.+++.+.+..+. ..... .-++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~-n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLL-NIPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhh-cchh
Confidence 4589999999999999999988764334556665543 444 455 99999999999998877652 12112 2345
Q ss_pred HHHHHHHHHHHHHHhcccC------CccCceeeEEEEEEeCCCCceEEEECCCCceec----ccEEEecCChhhhhHHHH
Q psy14445 108 LHLLNERVSMYVHAYTLYS------MVRPFGASLLLASHDKTDGPSLYVVDPSGVSHG----YFGCAIGKAKQNAKTEIE 177 (252)
Q Consensus 108 ~~~la~~l~~~~~~~t~~~------~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~----~~~~a~G~g~~~~~~~Le 177 (252)
+-..+..++....+-..+. ..--|.|++|++|.-...-|.||.+-|.|++.+ ..+.-+|... +-+++|+
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEtK-YGKPild 159 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGETK-YGKPILD 159 (255)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccccc-cCchhhh
Confidence 6666677666554422111 124588999999987744578999999999985 3578888765 6789999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhc-cCCCcceEEEEEEEecCCC--eEEecCh---------hHHHHHHHHHHhcccC
Q psy14445 178 KLKLSTLSMEQLAKEAARIIYVVHDE-LKDKHFELELAWVGEKTNG--KFEMVPQ---------SFLEECENYAKASLQD 245 (252)
Q Consensus 178 ~~~~~~~s~~eai~la~~al~~~~~~-~~~~~~~iev~~i~~~~~~--~~~~~~~---------~~~~~~~~~~~~~~~~ 245 (252)
+.+..++.++||.++++-++....+. ++-+ ..+.+-++.++.=. .+..+.+ +.+..+++++-+.+.+
T Consensus 160 R~i~~~~pLeea~kcaLvS~DSTlkSNiSVG-lPldLl~~e~ds~~v~~~~ri~edd~Y~a~ir~~W~~~lrq~f~~lpd 238 (255)
T COG3484 160 RTITYDTPLEEAAKCALVSFDSTLKSNISVG-LPLDLLVYEADSFSVRHTLRIREDDPYFAKIRSLWSSYLRQAFESLPD 238 (255)
T ss_pred hhhhccCCHHHHhhheEEecchhhhcccccc-CCceeEEEeccceeeeeeeEeccCChHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999888755 3332 34666666654211 1112221 3466777777766655
Q ss_pred CCC
Q psy14445 246 SDS 248 (252)
Q Consensus 246 ~~~ 248 (252)
-+.
T Consensus 239 ~~~ 241 (255)
T COG3484 239 PPW 241 (255)
T ss_pred Ccc
Confidence 443
No 50
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.5e-08 Score=80.40 Aligned_cols=153 Identities=21% Similarity=0.214 Sum_probs=109.3
Q ss_pred cCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEe-cCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHH
Q psy14445 33 NSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHV-DTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLH 109 (252)
Q Consensus 33 ~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i-~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~ 109 (252)
+++|+|+++-++-|+||.|...+-|..+ ..+..|+-+| +.++..+ +|..+|+..+.+.+..+++.|.-+ +.
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~------L~ 76 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGD------LF 76 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCc------HH
Confidence 5789999999999999999999988754 4455444444 4578888 999999999999999998887421 12
Q ss_pred HHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceec-c-cEEEecCChhhhhHHHHHhcC-CCCCH
Q psy14445 110 LLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHG-Y-FGCAIGKAKQNAKTEIEKLKL-STLSM 186 (252)
Q Consensus 110 ~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~-~-~~~a~G~g~~~~~~~Le~~~~-~~~s~ 186 (252)
..+..+++-++ + ....|.+-+-++++ |+ -.++-+...|-..+ . ..+|+|||..++.+--...+. +++|
T Consensus 77 raavelaKdwr--~-Dk~lr~LEAmllVa--d~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls- 147 (178)
T COG5405 77 RAAVELAKDWR--T-DKYLRKLEAMLLVA--DK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS- 147 (178)
T ss_pred HHHHHHHHhhh--h-hhHHHHHhhheeEe--CC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC-
Confidence 23333444332 1 12345666767776 33 34777777787764 3 489999999999988777653 5676
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14445 187 EQLAKEAARIIYVVHD 202 (252)
Q Consensus 187 ~eai~la~~al~~~~~ 202 (252)
|-+++.++|..+.+
T Consensus 148 --A~eIa~~sl~iA~e 161 (178)
T COG5405 148 --AREIAEKSLKIAGD 161 (178)
T ss_pred --HHHHHHHHHhhhhe
Confidence 55677778877764
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=94.75 E-value=0.3 Score=40.48 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=34.7
Q ss_pred hhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHh--hccCCCcceEEEEEEEe
Q psy14445 170 QNAKTEIEKLKLSTLSMEQLAKEAARIIYVVH--DELKDKHFELELAWVGE 218 (252)
Q Consensus 170 ~~~~~~Le~~~~~~~s~~eai~la~~al~~~~--~~~~~~~~~iev~~i~~ 218 (252)
+.+...|.++|++.|+++++.++..++|..+. .+.-++ .+++...++
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~--~~d~~~~~~ 179 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSK--EYDIYITTK 179 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccC--cEEEEEecc
Confidence 56677788889999999999999999999995 332222 345555443
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.93 E-value=3.1 Score=35.84 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=88.6
Q ss_pred CcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNE 113 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~ 113 (252)
+.+|+..++||.|+|.|+|. ++ -|.-.|...+-+.+ -.|.--+-+.|++
T Consensus 2 tLviay~gknGaviaGDrR~---------------------i~frgdee~re~lEekL---------YsGeIkteEEL~r 51 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE---------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELAR 51 (293)
T ss_pred eEEEEEecCCCcEEeccceE---------------------EEEecChhHHHHHHHHh---------hcCccccHHHHHH
Confidence 45799999999999999875 35 67777766665544 2344445566666
Q ss_pred HHHHHHHHhcc---cCCccCceeeEEEEEEeCC-----CCceEEEECCCCceec-------ccEEEecCC----------
Q psy14445 114 RVSMYVHAYTL---YSMVRPFGASLLLASHDKT-----DGPSLYVVDPSGVSHG-------YFGCAIGKA---------- 168 (252)
Q Consensus 114 ~l~~~~~~~t~---~~~~rP~~~~~iiaG~D~~-----~gp~Ly~id~~G~~~~-------~~~~a~G~g---------- 168 (252)
+...+--..+- +...|...-+++++-+... ..-.+|.+ .|++.- ......|.|
T Consensus 52 ~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT--~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~ 129 (293)
T COG4079 52 KAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYAT--AGAYAIVELRGSEVTSTSQGKGSAIIVFGNKF 129 (293)
T ss_pred HHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeec--CCceEEEEecCCeeEeeecCCCceEEEECcHH
Confidence 65543222111 1112333233343333321 11234433 222210 112223332
Q ss_pred -hhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhh--ccCCCcceEEEEEEEecCCCeEEecC
Q psy14445 169 -KQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHD--ELKDKHFELELAWVGEKTNGKFEMVP 228 (252)
Q Consensus 169 -~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~--~~~~~~~~iev~~i~~~~~~~~~~~~ 228 (252)
.+.+..+|.++|.+.++++++.+....+|..+.. +.-++ ++.++.++..-...++.+.
T Consensus 130 ~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVsk--eydiy~vs~~~d~~~rl~k 190 (293)
T COG4079 130 TKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSK--EYDIYQVSSNVDPVLRLVK 190 (293)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccc--eeEEEEecCCcCHHHHHHH
Confidence 2445677888899999999999999999988762 23333 4567776653232344444
No 53
>KOG3361|consensus
Probab=72.90 E-value=5.9 Score=30.94 Aligned_cols=44 Identities=18% Similarity=0.091 Sum_probs=40.0
Q ss_pred EEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 149 YVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 149 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
..+|-+|.+...++-..|.|+..+.+-+-..|-..+|++||..+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 46788999999999999999999999998999999999999865
No 54
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=62.76 E-value=10 Score=25.30 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=28.4
Q ss_pred cccCC-CCccchhhhHHHHHhcCCcEEEEEeCC
Q psy14445 13 SQFSP-DGRVFQVEYAQKAVENSSTAIGLRGKD 44 (252)
Q Consensus 13 t~fsp-eGrl~Qveya~~av~~G~t~vgi~~~d 44 (252)
|.||+ +|.+.--+|+..|..+|-..|||+=-+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 67888 999999999999999999999997665
No 55
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=61.48 E-value=14 Score=23.99 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEE
Q psy14445 184 LSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFE 225 (252)
Q Consensus 184 ~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~ 225 (252)
-|++||++.|++-|..-. ..+++-++.+.++|++-
T Consensus 5 kt~eeAi~~A~~~l~~~~-------~~~~~eVi~~g~kGf~G 39 (52)
T PF14804_consen 5 KTVEEAIEKALKELGVPR-------EELEYEVIEEGKKGFFG 39 (52)
T ss_dssp SSHHHHHHHHHHHTT--G-------GGEEEEEEE--B-----
T ss_pred CCHHHHHHHHHHHhCCCh-------HHEEEEEEEcCCCcEEe
Confidence 378898888877665443 34777888876677664
No 56
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=45.10 E-value=15 Score=23.12 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=24.7
Q ss_pred EecCChhhhhHHHHHhc-CCCCCHHHHHHHHHHH
Q psy14445 164 AIGKAKQNAKTEIEKLK-LSTLSMEQLAKEAARI 196 (252)
Q Consensus 164 a~G~g~~~~~~~Le~~~-~~~~s~~eai~la~~a 196 (252)
+.|.....+...+.+.. .++++.+|.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 45888888888888876 8899999988887653
No 57
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=35.89 E-value=41 Score=26.34 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=26.1
Q ss_pred cccC-CCCccchhhhHHHHHhcCCcEEEEEeC
Q psy14445 13 SQFS-PDGRVFQVEYAQKAVENSSTAIGLRGK 43 (252)
Q Consensus 13 t~fs-peGrl~Qveya~~av~~G~t~vgi~~~ 43 (252)
|.|| ++|...--||+..|.++|-+.|||+=-
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHTTESEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHcCCCEEEEcCC
Confidence 5688 899998889999999999998888644
No 58
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=32.11 E-value=1.9e+02 Score=27.30 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeC
Q psy14445 106 IPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDK 142 (252)
Q Consensus 106 i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~ 142 (252)
-+++.++.-+++++..|..+|+.++ +++.||.-
T Consensus 303 rtPe~~a~Dl~r~i~~y~~~w~~~~----~~liGySf 335 (456)
T COG3946 303 RTPEQIAADLSRLIRFYARRWGAKR----VLLIGYSF 335 (456)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCcce----EEEEeecc
Confidence 3889999999999999988777554 47889864
No 59
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=31.32 E-value=1.6e+02 Score=21.10 Aligned_cols=53 Identities=23% Similarity=0.356 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHHH
Q psy14445 181 LSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAK 240 (252)
Q Consensus 181 ~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~~ 240 (252)
.+.++.++..+.++...... ... .+.|.|++++ +-..-+.+.++++++++-..
T Consensus 17 d~~~s~e~L~~~v~~~c~~~----~~q--~ft~kw~DEE-GDp~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 17 DPSISLEELCNEVRDMCRFH----NDQ--PFTLKWIDEE-GDPCTISSQMELEEAFRLYE 69 (83)
T ss_pred CCCcCHHHHHHHHHHHhCCC----CCC--cEEEEEECCC-CCceeecCHHHHHHHHHHHH
Confidence 35677777777666554432 222 3678999986 55577889999999987654
No 60
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=30.49 E-value=64 Score=26.95 Aligned_cols=34 Identities=6% Similarity=-0.049 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeC
Q psy14445 105 NIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDK 142 (252)
Q Consensus 105 ~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~ 142 (252)
.-+|+.++..++++++.|.++++.+.+ +|+||.-
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~~v----vLiGYSF 77 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRKRV----VLIGYSF 77 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCceE----EEEeecC
Confidence 457899999999999999988775544 7889864
No 61
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=30.46 E-value=21 Score=26.27 Aligned_cols=9 Identities=56% Similarity=1.272 Sum_probs=5.6
Q ss_pred ccCCCCccc
Q psy14445 14 QFSPDGRVF 22 (252)
Q Consensus 14 ~fspeGrl~ 22 (252)
.|||||||.
T Consensus 19 efs~DGkLv 27 (109)
T COG4831 19 EFSPDGKLV 27 (109)
T ss_pred eeCCCCceE
Confidence 466666663
No 62
>PRK08868 flagellar protein FlaG; Provisional
Probab=29.33 E-value=2.8e+02 Score=22.01 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=24.9
Q ss_pred eEEEEEEEecCCCeEEecChhHHHHHHHHHH
Q psy14445 210 ELELAWVGEKTNGKFEMVPQSFLEECENYAK 240 (252)
Q Consensus 210 ~iev~~i~~~~~~~~~~~~~~~~~~~~~~~~ 240 (252)
.+-|.+|+++++-..|-+|.+++-.+.+.-.
T Consensus 101 r~VVkViD~~T~EVIRQIP~Ee~L~la~~l~ 131 (144)
T PRK08868 101 RDVVTIYEASTGDIIRQIPDEEMLEVLRRLA 131 (144)
T ss_pred CEEEEEEECCCCceeeeCCCHHHHHHHHHHH
Confidence 3668999998888899999998877776544
No 63
>PRK07328 histidinol-phosphatase; Provisional
Probab=26.29 E-value=76 Score=27.52 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=26.9
Q ss_pred cccCCCCccchhhhHHHHHhcCCcEEEEEeC
Q psy14445 13 SQFSPDGRVFQVEYAQKAVENSSTAIGLRGK 43 (252)
Q Consensus 13 t~fspeGrl~Qveya~~av~~G~t~vgi~~~ 43 (252)
|.||++|.-.--||+.+|+.+|-+.+||+--
T Consensus 10 T~~s~~~~~~~ee~v~~A~~~Gl~~i~~TdH 40 (269)
T PRK07328 10 TPLCGHAVGTPEEYVQAARRAGLKEIGFTDH 40 (269)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEecC
Confidence 6899998877779999999999999999754
No 64
>PRK06361 hypothetical protein; Provisional
Probab=25.63 E-value=79 Score=26.15 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=27.7
Q ss_pred cccCCCCccchhhhHHHHHhcCCcEEEEEeCC
Q psy14445 13 SQFSPDGRVFQVEYAQKAVENSSTAIGLRGKD 44 (252)
Q Consensus 13 t~fspeGrl~Qveya~~av~~G~t~vgi~~~d 44 (252)
|.|| +|+..--|++..|...|-..|||+--.
T Consensus 3 t~~s-dg~~~~~e~v~~A~~~Gl~~i~iTDH~ 33 (212)
T PRK06361 3 TIFS-DGELIPSELVRRARVLGYRAIAITDHA 33 (212)
T ss_pred cccc-CCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 6788 899999999999999999999998764
No 65
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=25.46 E-value=75 Score=27.31 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=27.2
Q ss_pred cccCCCCccchhhhHHHHHhcCCcEEEEEeC
Q psy14445 13 SQFSPDGRVFQVEYAQKAVENSSTAIGLRGK 43 (252)
Q Consensus 13 t~fspeGrl~Qveya~~av~~G~t~vgi~~~ 43 (252)
|.||++|+-.=-||+..|+++|-+.|||+--
T Consensus 7 t~~s~d~~~~~ee~v~~A~~~Gl~~i~~TdH 37 (253)
T TIGR01856 7 SPFCAHGTDTLEEVVQEAIQLGFEEICFTEH 37 (253)
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEecCC
Confidence 5799999887789999999999999998754
No 66
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=24.90 E-value=89 Score=25.58 Aligned_cols=35 Identities=40% Similarity=0.416 Sum_probs=27.0
Q ss_pred cCCCCccchhhhHHH-HHhcCCcEEEEEeCCEEEEE
Q psy14445 15 FSPDGRVFQVEYAQK-AVENSSTAIGLRGKDGVVIA 49 (252)
Q Consensus 15 fspeGrl~Qveya~~-av~~G~t~vgi~~~dgVvla 49 (252)
+||.|.=.-|=-|.+ |..+|-++||++++||--++
T Consensus 116 ISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 116 ISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 577777555555555 56789999999999998776
No 67
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.27 E-value=1.7e+02 Score=21.01 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=23.6
Q ss_pred hhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy14445 170 QNAKTEIEKLKLSTLSMEQLAKEAARIIYVVH 201 (252)
Q Consensus 170 ~~~~~~Le~~~~~~~s~~eai~la~~al~~~~ 201 (252)
..+..+|++...|++|+++.+++-..++....
T Consensus 32 erakeiLe~LndpeisL~eSvkLYkeG~~lL~ 63 (86)
T PRK14065 32 HSLEQAIDRLNDPNLSLKDGMDLYKTAMQELF 63 (86)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888777766553
No 68
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=23.92 E-value=84 Score=26.90 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=25.2
Q ss_pred cccCCCCccchhhhHHHHHhcCCcEEEEE
Q psy14445 13 SQFSPDGRVFQVEYAQKAVENSSTAIGLR 41 (252)
Q Consensus 13 t~fspeGrl~Qveya~~av~~G~t~vgi~ 41 (252)
|.|| +|..--.|++.+|...|-..++++
T Consensus 9 T~~s-dg~~~~~e~~~~A~~~g~~~~~iT 36 (237)
T COG1387 9 TVFS-DGEATPEEMVEAAIELGLEYIAIT 36 (237)
T ss_pred cccc-cCCCCHHHHHHHHHHcCCeEEEEe
Confidence 7899 999999999999999998887765
No 69
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=22.57 E-value=1.7e+02 Score=19.74 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy14445 88 AETAKTEASEYRSKYGGNIPLHLLNERVSMYV 119 (252)
Q Consensus 88 ~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~ 119 (252)
.+.+++.........|+.++.+.+|..+.--.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~ 34 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGISV 34 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-H
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcccH
Confidence 34555555666778899999999999776433
No 70
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=22.31 E-value=1.9e+02 Score=18.37 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=21.4
Q ss_pred hHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy14445 173 KTEIEKLKLSTLSMEQLAKEAARIIYVVHD 202 (252)
Q Consensus 173 ~~~Le~~~~~~~s~~eai~la~~al~~~~~ 202 (252)
..++++.-.+++++++++++-.+++..+..
T Consensus 9 e~Iv~~Le~~~~sLdes~~lyeeg~~l~~~ 38 (53)
T PF02609_consen 9 EEIVEKLESGELSLDESLKLYEEGMELIKK 38 (53)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 345555567899999999999988887653
No 71
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=21.07 E-value=1.4e+02 Score=18.36 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=21.5
Q ss_pred ccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEE
Q psy14445 14 QFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIA 49 (252)
Q Consensus 14 ~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvla 49 (252)
+-.|+|+..|+.-. -..|.+.+..|+|+.
T Consensus 5 ii~~dG~~~q~~~~-------~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 5 IITPDGTNVQFPHG-------VANIVLIGPSGAVLS 33 (40)
T ss_pred eECCCCCEEECCcc-------cceEEEECCceEEee
Confidence 45799999997653 236778888888875
No 72
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=20.50 E-value=3.9e+02 Score=20.54 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhc--------cCCCcceEEEEEEEecCCCeEEecChhHHHHHHHH
Q psy14445 188 QLAKEAARIIYVVHDE--------LKDKHFELELAWVGEKTNGKFEMVPQSFLEECENY 238 (252)
Q Consensus 188 eai~la~~al~~~~~~--------~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~ 238 (252)
|.++++.+=|...++. +......+-|.+++++|+...|-+|.+++=++.+.
T Consensus 49 e~L~~~v~~ink~~k~~nt~l~F~~dd~lg~~vVkI~d~~TgeVIRqIPpee~L~l~~r 107 (120)
T COG1334 49 EKLALIVEDINKLLKSLNTHLNFSYDDELGELVVKIIDKDTGEVIRQIPPEEALELAAR 107 (120)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEecccCcEEEEEEECCCCcchhhCChHHHHHHHHH
Confidence 3555666656555433 11111235688888988888888998877666544
No 73
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=20.28 E-value=2.6e+02 Score=26.48 Aligned_cols=92 Identities=17% Similarity=0.317 Sum_probs=52.4
Q ss_pred CCceEEEECCCCceecccEEE-ecCChhhhhHHHHHh-----------------cCCCCCHHHHHHHHH----------H
Q psy14445 144 DGPSLYVVDPSGVSHGYFGCA-IGKAKQNAKTEIEKL-----------------KLSTLSMEQLAKEAA----------R 195 (252)
Q Consensus 144 ~gp~Ly~id~~G~~~~~~~~a-~G~g~~~~~~~Le~~-----------------~~~~~s~~eai~la~----------~ 195 (252)
.||.+-.+|.+|+....+..+ -=..-..+...|-.+ +.+..+.+|+++.+. +
T Consensus 272 ~GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~el~~k~~~~~e~i~fL~~~f~GGTD~~~ 351 (437)
T COG2425 272 EGPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYELYEKKIDIEELIEFLSYVFGGGTDITK 351 (437)
T ss_pred CCCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeeeecCCccCHHHHHHHHhhhcCCCCChHH
Confidence 389999999999997654211 111111111112221 235568999999875 4
Q ss_pred HHHHHhhccCC-CcceEEEEEEEecCCCeEEecChhHHHHHHHHH
Q psy14445 196 IIYVVHDELKD-KHFELELAWVGEKTNGKFEMVPQSFLEECENYA 239 (252)
Q Consensus 196 al~~~~~~~~~-~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~ 239 (252)
||..+.++.+. .-++.++.+||. |..+++ .+.+....+.+
T Consensus 352 ~l~~al~~~k~~~~~~adiv~ITD---g~~~~~-~~~~~~v~e~~ 392 (437)
T COG2425 352 ALRSALEDLKSRELFKADIVVITD---GEDERL-DDFLRKVKELK 392 (437)
T ss_pred HHHHHHHHhhcccccCCCEEEEec---cHhhhh-hHHHHHHHHHH
Confidence 66666655331 123356778875 767766 55555554443
No 74
>PF05113 DUF693: Protein of unknown function (DUF693); InterPro: IPR007800 This family consists of uncharacterised proteins from Borrelia burgdorferi.
Probab=20.13 E-value=2.5e+02 Score=24.93 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=38.3
Q ss_pred eEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHH---HHhcCCCCCHHHHHHHH
Q psy14445 134 SLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEI---EKLKLSTLSMEQLAKEA 193 (252)
Q Consensus 134 ~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L---e~~~~~~~s~~eai~la 193 (252)
.+|.+|+ -|+-+=..-|.|.+.-.--.-.=+.+.+....| |..-..+||.+||++.+
T Consensus 98 ~FImaGy---Lg~Pmstdyp~gDFsvelev~LlsksnFfnRkl~~~e~k~fKg~TV~daI~sv 157 (314)
T PF05113_consen 98 DFIMAGY---LGAPMSTDYPGGDFSVELEVYLLSKSNFFNRKLDGKEYKNFKGMTVQDAIKSV 157 (314)
T ss_pred cEEeecc---cCCCceeccCCCceEEEEEEEEeecchhHhhhhccccccccCCcCHHHHHHHh
Confidence 5788997 344455555778876554455566776777777 44455789988888764
Done!