Query psy14445
Match_columns 252
No_of_seqs 139 out of 1331
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 20:03:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nzj_F Proteasome component C1 100.0 8.4E-69 2.9E-73 471.9 30.8 249 1-250 1-254 (288)
2 1iru_G 20S proteasome; cell cy 100.0 2E-66 6.7E-71 450.4 28.4 246 2-247 1-247 (254)
3 3h4p_A Proteasome subunit alph 100.0 7.7E-65 2.6E-69 442.3 22.5 241 5-249 9-250 (264)
4 1ryp_G 20S proteasome; multica 100.0 4.2E-63 1.4E-67 427.1 31.6 237 6-243 2-243 (244)
5 1ryp_A 20S proteasome; multica 100.0 4.2E-63 1.4E-67 426.8 26.1 230 6-239 1-239 (243)
6 1iru_A 20S proteasome; cell cy 100.0 1.5E-62 5E-67 424.2 29.5 236 1-239 3-242 (246)
7 1iru_C 20S proteasome; cell cy 100.0 1.8E-62 6.3E-67 427.0 29.6 237 6-242 3-243 (261)
8 1ryp_C 20S proteasome; multica 100.0 2.4E-62 8.1E-67 422.4 30.0 233 6-239 3-241 (244)
9 1yar_A Proteasome alpha subuni 100.0 2.1E-62 7.3E-67 419.9 26.5 229 1-235 3-232 (233)
10 1iru_E 20S proteasome; cell cy 100.0 4.1E-62 1.4E-66 420.2 26.0 228 6-237 6-239 (241)
11 1iru_B 20S proteasome; cell cy 100.0 8E-62 2.7E-66 416.4 27.7 228 5-237 2-230 (233)
12 1j2p_A Alpha-ring, proteasome 100.0 1.5E-61 5E-66 418.0 29.5 230 6-240 6-237 (246)
13 1ryp_D 20S proteasome; multica 100.0 2.5E-61 8.6E-66 415.3 29.9 228 7-239 1-234 (241)
14 1iru_D 20S proteasome; cell cy 100.0 6.5E-62 2.2E-66 420.7 25.0 228 8-240 3-233 (248)
15 1ryp_E 20S proteasome; multica 100.0 2.7E-61 9.1E-66 415.3 27.0 230 9-241 1-237 (242)
16 1ryp_B 20S proteasome; multica 100.0 7.6E-61 2.6E-65 414.4 28.3 231 6-237 3-248 (250)
17 1ryp_F 20S proteasome; multica 100.0 5.2E-61 1.8E-65 411.4 21.4 225 6-235 3-232 (233)
18 1iru_F 20S proteasome; cell cy 100.0 2.9E-60 9.8E-65 413.6 25.3 229 6-239 4-236 (263)
19 1q5q_A Proteasome alpha-type s 100.0 7.9E-51 2.7E-55 353.3 20.9 216 12-237 4-233 (259)
20 3mi0_A Proteasome subunit alph 100.0 1.3E-49 4.4E-54 343.1 25.7 208 23-240 16-238 (248)
21 3h4p_a Proteasome subunit beta 100.0 1.3E-46 4.3E-51 319.3 22.2 205 34-245 1-208 (219)
22 1yar_H Proteasome beta subunit 100.0 4.3E-46 1.5E-50 315.6 25.2 205 29-241 3-209 (217)
23 1j2q_H Proteasome beta subunit 100.0 3.4E-45 1.2E-49 306.7 24.0 196 35-238 1-199 (202)
24 3nzj_K Proteasome component PR 100.0 2.2E-45 7.7E-50 322.7 23.9 208 25-239 66-275 (287)
25 1iru_H 20S proteasome; cell cy 100.0 1.6E-45 5.5E-50 309.3 20.6 197 35-237 1-199 (205)
26 1ryp_L 20S proteasome; multica 100.0 6.4E-45 2.2E-49 307.2 24.2 204 35-245 1-206 (212)
27 1q5r_H Proteasome beta-type su 100.0 5.3E-45 1.8E-49 321.3 22.9 209 27-239 58-282 (294)
28 2jay_A Proteasome; hydrolase; 100.0 6.1E-45 2.1E-49 320.6 22.4 230 5-239 22-274 (291)
29 1iru_N 20S proteasome; cell cy 100.0 2.8E-45 9.5E-50 310.9 17.6 201 29-235 3-208 (219)
30 1iru_L 20S proteasome; cell cy 100.0 2.6E-44 9E-49 301.7 23.2 197 35-239 1-199 (204)
31 1iru_M 20S proteasome; cell cy 100.0 3.5E-44 1.2E-48 302.9 23.6 185 31-219 6-201 (213)
32 1ryp_H 20S proteasome; multica 100.0 1.9E-44 6.6E-49 302.8 21.0 186 28-219 3-190 (205)
33 1ryp_N 20S proteasome; multica 100.0 3.2E-45 1.1E-49 313.4 15.7 203 29-235 3-217 (233)
34 3nzj_H Proteasome component PU 100.0 1.4E-43 4.6E-48 307.7 24.1 187 27-219 22-210 (261)
35 1q5q_H Proteasome beta-type su 100.0 1.6E-43 5.5E-48 303.2 23.9 203 35-241 1-219 (235)
36 1ryp_K 20S proteasome; multica 100.0 2.5E-43 8.4E-48 294.4 23.1 183 35-219 2-187 (198)
37 1iru_J 20S proteasome; cell cy 100.0 2.4E-43 8.2E-48 296.1 22.6 192 31-227 5-200 (205)
38 1ryp_J 20S proteasome; multica 100.0 5E-43 1.7E-47 293.9 24.0 191 31-227 5-199 (204)
39 1g0u_M Proteasome component PR 100.0 2E-44 6.9E-49 314.1 15.5 208 24-235 31-250 (266)
40 1ryp_M 20S proteasome; multica 100.0 4.8E-43 1.6E-47 297.9 22.8 185 31-219 6-210 (222)
41 3unf_H Proteasome subunit beta 100.0 2.9E-43 9.8E-48 301.3 21.5 188 35-231 1-190 (234)
42 3unf_N Proteasome subunit beta 100.0 3.2E-43 1.1E-47 293.9 17.7 194 35-236 1-197 (199)
43 1iru_K 20S proteasome; cell cy 100.0 5.6E-42 1.9E-46 286.9 22.6 183 35-219 2-186 (201)
44 1ryp_I 20S proteasome; multica 100.0 1.1E-41 3.9E-46 289.4 23.2 179 35-219 1-181 (222)
45 1iru_I 20S proteasome; cell cy 100.0 5.5E-41 1.9E-45 287.3 23.6 179 35-219 1-181 (234)
46 2z3b_A ATP-dependent protease 100.0 6.2E-35 2.1E-39 240.3 16.9 168 32-216 3-179 (180)
47 1m4y_A ATP-dependent protease 100.0 2.6E-34 9E-39 234.6 17.5 164 35-215 1-170 (171)
48 1g3k_A ATP-dependent protease 100.0 3.7E-34 1.3E-38 234.4 16.8 166 35-217 1-173 (174)
49 1vd2_A Protein kinase C, IOTA 41.4 30 0.001 24.1 3.8 54 180-240 22-75 (89)
50 2yxo_A Histidinol phosphatase; 40.3 22 0.00075 29.0 3.6 31 13-43 8-38 (267)
51 3rj2_X ORF158L protein, putati 37.4 6.9 0.00023 28.9 -0.1 19 5-23 52-70 (138)
52 3jx9_A Putative phosphoheptose 35.5 22 0.00074 27.9 2.6 31 12-42 81-112 (170)
53 3jtz_A Integrase; four strande 25.5 61 0.0021 22.2 3.3 56 140-202 21-77 (88)
54 3a1q_C Ubiquitin interaction m 22.7 60 0.0021 19.1 2.3 17 182-198 2-18 (45)
55 2hc5_A ORF 99, hypothetical pr 22.3 1.2E+02 0.0042 22.0 4.5 30 210-239 68-97 (117)
56 1m65_A Hypothetical protein YC 20.2 73 0.0025 25.4 3.3 31 13-43 10-40 (245)
No 1
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=8.4e-69 Score=471.85 Aligned_cols=249 Identities=48% Similarity=0.795 Sum_probs=232.5
Q ss_pred CCCCCCCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ec
Q psy14445 1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SG 79 (252)
Q Consensus 1 ms~~~~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG 79 (252)
|||+.++||+++|+|||+|||||||||+||+++|+|+|||+++||||||+|+|.++++++.++.+|||+|++||+|+ +|
T Consensus 1 m~~~~~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG 80 (288)
T 3nzj_F 1 MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSG 80 (288)
T ss_dssp ----CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEE
T ss_pred CCCCcCCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999877889999999999999 99
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceec
Q psy14445 80 LISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHG 159 (252)
Q Consensus 80 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~ 159 (252)
..+|++.+++++|.+++.|++++++++|++.+|++|++++|.||++++.|||+|++||||||+ +||+||++||+|++.+
T Consensus 81 ~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~ 159 (288)
T 3nzj_F 81 LIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWG 159 (288)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999 8899999999999999
Q ss_pred ccEEEecCChhhhhHHHHHh---cCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEe-cCCCeEEecChhHHHHH
Q psy14445 160 YFGCAIGKAKQNAKTEIEKL---KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGE-KTNGKFEMVPQSFLEEC 235 (252)
Q Consensus 160 ~~~~a~G~g~~~~~~~Le~~---~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~-~~~~~~~~~~~~~~~~~ 235 (252)
++++|+|+|+++++++||+. |+++||++||++++++||..++++...+++.+||+||++ +++++|+++|+++++++
T Consensus 160 ~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~ 239 (288)
T 3nzj_F 160 YKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEA 239 (288)
T ss_dssp BSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHH
T ss_pred cCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHH
Confidence 99999999999999999999 999999999999999999999988666778899999999 78999999999999999
Q ss_pred HHHHHhcccCCCCCC
Q psy14445 236 ENYAKASLQDSDSDN 250 (252)
Q Consensus 236 ~~~~~~~~~~~~~~~ 250 (252)
.+.|+..++++|+++
T Consensus 240 ~~~~~~~~~~~~~~~ 254 (288)
T 3nzj_F 240 IDFAQKEINGDDDED 254 (288)
T ss_dssp HHHHHHHTC------
T ss_pred HHHHHHHhhcccccc
Confidence 999999888777653
No 2
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=2e-66 Score=450.38 Aligned_cols=246 Identities=66% Similarity=1.071 Sum_probs=232.4
Q ss_pred CCCCCCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecc
Q psy14445 2 SSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGL 80 (252)
Q Consensus 2 s~~~~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~ 80 (252)
||++++||+++|+|||||||||||||++|+++|+|+|||+++||||||+|+|.+.++++.++.+|||+|++||+|+ +|.
T Consensus 1 ~~~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~ 80 (254)
T 1iru_G 1 SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGL 80 (254)
T ss_dssp CCCCSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEEC
T ss_pred CCcccccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecC
Confidence 6788999999999999999999999999999999999999999999999999999999888889999999999999 999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecc
Q psy14445 81 ISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGY 160 (252)
Q Consensus 81 ~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~ 160 (252)
.+|++.+.++++.+++.|++++++++|++.+++++++++|.|+++++.|||++++||||||+.+||+||++||+|++.++
T Consensus 81 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 160 (254)
T 1iru_G 81 LADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGY 160 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEB
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEee
Confidence 99999999999999999999999999999999999999999999989999999999999995489999999999999999
Q ss_pred cEEEecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHHH
Q psy14445 161 FGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAK 240 (252)
Q Consensus 161 ~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~~ 240 (252)
+++|+|+|+++++++||+.|+++||++||++++++||+.+.++...+++.+||++|+++++|.++++++++++++++.++
T Consensus 161 ~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~ 240 (254)
T 1iru_G 161 WGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240 (254)
T ss_dssp SEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred eeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998765445678999999986556799999999999999999
Q ss_pred hcccCCC
Q psy14445 241 ASLQDSD 247 (252)
Q Consensus 241 ~~~~~~~ 247 (252)
..++.++
T Consensus 241 ~~~~~~~ 247 (254)
T 1iru_G 241 ESLKEED 247 (254)
T ss_dssp HHHCC--
T ss_pred Hhhhhcc
Confidence 8888433
No 3
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.7e-65 Score=442.35 Aligned_cols=241 Identities=32% Similarity=0.542 Sum_probs=221.2
Q ss_pred CCCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhh
Q psy14445 5 GAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISA 83 (252)
Q Consensus 5 ~~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D 83 (252)
.++||+++|+|||||||||||||++|+++|+|+|||+++||||||+|+|.+++++.+++.+|||+|++||+|+ +|..+|
T Consensus 9 ~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~aD 88 (264)
T 3h4p_A 9 PSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVAD 88 (264)
T ss_dssp -------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECSHH
T ss_pred ccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccchHH
Confidence 4789999999999999999999999999999999999999999999999999987788899999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEE
Q psy14445 84 GRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGC 163 (252)
Q Consensus 84 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~ 163 (252)
++.++++++.+++.|+++++++++++.+|++|++++|.|+++++.|||++++||||||+ +||+||++||+|++.+++++
T Consensus 89 ~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~ 167 (264)
T 3h4p_A 89 ARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKAT 167 (264)
T ss_dssp HHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEE
T ss_pred HHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeE
Confidence 99999999999999999999999999999999999999999999999999999999998 89999999999999999999
Q ss_pred EecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHHHhcc
Q psy14445 164 AIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKASL 243 (252)
Q Consensus 164 a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (252)
|+|+|+.+++++||+.|+++||++||++++++||..+.++. ++..++|++|+++ +..|++++.++++.+++.....+
T Consensus 168 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~~--sg~~iev~vi~~~-~~~~~~l~~~ei~~~~~~~~~~~ 244 (264)
T 3h4p_A 168 AIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDI--KPENVDVCIITVK-DAQFKKIPVEEIKKLIEKVKKKL 244 (264)
T ss_dssp EESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSSC--CTTSEEEEEEETT-TTEEEECCTTTTGGGTTTTTTSS
T ss_pred EECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc--CCCeEEEEEEEeC-CCcEEECCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999873 4567999999986 45699999999999999998888
Q ss_pred cCCCCC
Q psy14445 244 QDSDSD 249 (252)
Q Consensus 244 ~~~~~~ 249 (252)
+++|.+
T Consensus 245 ~~~~~~ 250 (264)
T 3h4p_A 245 NEENKK 250 (264)
T ss_dssp SCC---
T ss_pred hcchhh
Confidence 887766
No 4
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=4.2e-63 Score=427.15 Aligned_cols=237 Identities=49% Similarity=0.793 Sum_probs=225.8
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhH
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAG 84 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~ 84 (252)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++++.++.+||++|++||+|+ +|..+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~ 81 (244)
T 1ryp_G 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDG 81 (244)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHH
T ss_pred CCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHHH
Confidence 689999999999999999999999999999999999999999999999999998876679999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEE
Q psy14445 85 RQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCA 164 (252)
Q Consensus 85 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a 164 (252)
+.+.++++.+++.|+++++++++++.+++++++++|.|+++++.|||++++||||||+ +||+||.+||+|++.+++++|
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~a 160 (244)
T 1ryp_G 82 RHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAA 160 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEE
Confidence 9999999999999999999999999999999999999999988999999999999998 899999999999999999999
Q ss_pred ecCChhhhhHHHHHh---cCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEe-cCCCeEEecChhHHHHHHHHHH
Q psy14445 165 IGKAKQNAKTEIEKL---KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGE-KTNGKFEMVPQSFLEECENYAK 240 (252)
Q Consensus 165 ~G~g~~~~~~~Le~~---~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~-~~~~~~~~~~~~~~~~~~~~~~ 240 (252)
+|+|+++++++||+. |+++||++||++++++||..++++...+++.+||++|++ +++|.++..|+++++++.+.|+
T Consensus 161 iG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~~~~~~ 240 (244)
T 1ryp_G 161 TGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQ 240 (244)
T ss_dssp ESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHHHHHHHHH
Confidence 999999999999997 999999999999999999999977555667899999996 5568899999999999999988
Q ss_pred hcc
Q psy14445 241 ASL 243 (252)
Q Consensus 241 ~~~ 243 (252)
..+
T Consensus 241 ~~~ 243 (244)
T 1ryp_G 241 KEI 243 (244)
T ss_dssp HTT
T ss_pred Hhc
Confidence 765
No 5
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=4.2e-63 Score=426.83 Aligned_cols=230 Identities=33% Similarity=0.474 Sum_probs=217.7
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhc-CCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhh
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVEN-SSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISA 83 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~-G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D 83 (252)
++||+++|+|||||||||||||+||+++ |+|+|||+++||||||+|+|.+.+++.+++.+|||+|++||+|+ +|..+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 4699999999999999999999999999 99999999999999999999996666678899999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEE
Q psy14445 84 GRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGC 163 (252)
Q Consensus 84 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~ 163 (252)
++.+.++++.+++.|++++++++|++.+++++++++|.|+++++.|||++++||||||+.+||+||++||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~ 160 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT 160 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999988999999999999997679999999999999999999
Q ss_pred EecCChhhhhHHHHHhcCC-------CCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHH
Q psy14445 164 AIGKAKQNAKTEIEKLKLS-------TLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECE 236 (252)
Q Consensus 164 a~G~g~~~~~~~Le~~~~~-------~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~ 236 (252)
|+|+|++.++++||+.|++ +||++||++++++||..+.++. .++..+||++|+++ + +++++++++++++
T Consensus 161 a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~--g-~~~l~~~ei~~~~ 236 (243)
T 1ryp_A 161 ATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKD--K-FFTLSAENIEERL 236 (243)
T ss_dssp EESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETT--E-EEECCHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECC--C-eEECCHHHHHHHH
Confidence 9999999999999999998 9999999999999999998664 34568999999985 5 9999999999999
Q ss_pred HHH
Q psy14445 237 NYA 239 (252)
Q Consensus 237 ~~~ 239 (252)
+..
T Consensus 237 ~~~ 239 (243)
T 1ryp_A 237 VAI 239 (243)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 6
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.5e-62 Score=424.18 Aligned_cols=236 Identities=31% Similarity=0.491 Sum_probs=221.9
Q ss_pred CCCCCCCCCCCccccCCCCccchhhhHHHHHhc-CCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-e
Q psy14445 1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVEN-SSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-S 78 (252)
Q Consensus 1 ms~~~~~yd~~~t~fspeGrl~Qveya~~av~~-G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-s 78 (252)
||+ .++||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|+|.+.++..+++.+||++|++||+|+ +
T Consensus 3 m~~-~~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~a 81 (246)
T 1iru_A 3 RGS-SAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMT 81 (246)
T ss_dssp CSC-CCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEE
T ss_pred CCc-cCCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEe
Confidence 677 58999999999999999999999999999 99999999999999999999997666678899999999999999 9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCcee
Q psy14445 79 GLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSH 158 (252)
Q Consensus 79 G~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~ 158 (252)
|..+|++.+.++++.+++.|++++++++|++.+++++++++|.|+++++.|||++++||||||+++||+||.+||+|++.
T Consensus 82 G~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~ 161 (246)
T 1iru_A 82 GMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYC 161 (246)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEE
Confidence 99999999999999999999999999999999999999999999999899999999999999976799999999999999
Q ss_pred cccEEEecCChhhhhHHHHHhcCC--CCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHH
Q psy14445 159 GYFGCAIGKAKQNAKTEIEKLKLS--TLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECE 236 (252)
Q Consensus 159 ~~~~~a~G~g~~~~~~~Le~~~~~--~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~ 236 (252)
+++++|+|+|+++++++||+.|++ +|+++||++++++||..+.++. .++.++||++|+++ +..|++++++++++++
T Consensus 162 ~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~-g~~~~~l~~~ei~~~~ 239 (246)
T 1iru_A 162 GFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVE-NPKFRILTEAEIDAHL 239 (246)
T ss_dssp EBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETT-EEEEEECCHHHHHHHH
T ss_pred EeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECC-CCeEEECCHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999664 44568999999984 3449999999999998
Q ss_pred HHH
Q psy14445 237 NYA 239 (252)
Q Consensus 237 ~~~ 239 (252)
+..
T Consensus 240 ~~~ 242 (246)
T 1iru_A 240 VAL 242 (246)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 7
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.8e-62 Score=427.04 Aligned_cols=237 Identities=27% Similarity=0.408 Sum_probs=221.3
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCC-CceeEEEecCeeEEe-ecchhh
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPG-ANKRIFHVDTHIGLG-SGLISA 83 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~-~~~Ki~~i~~~i~~~-sG~~~D 83 (252)
++||+++|+|||||||||||||++|+++|+|+|||+++||||||+|+|.++++++.+ +.+||++|++||+|+ +|..+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD 82 (261)
T 1iru_C 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSD 82 (261)
T ss_dssp TTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHH
T ss_pred CccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHH
Confidence 379999999999999999999999999999999999999999999999999998855 489999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEE
Q psy14445 84 GRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGC 163 (252)
Q Consensus 84 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~ 163 (252)
++.+.++++.+++.|++++++++|++.+++++++++|.|+++.+.|||++++||||||+.+||+||.+||+|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (261)
T 1iru_C 83 ANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKAT 162 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999996579999999999999999999
Q ss_pred EecCChhhhhHHHHHhcCC-CCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCC-eEEecChhHHHHHHHHHHh
Q psy14445 164 AIGKAKQNAKTEIEKLKLS-TLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNG-KFEMVPQSFLEECENYAKA 241 (252)
Q Consensus 164 a~G~g~~~~~~~Le~~~~~-~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~-~~~~~~~~~~~~~~~~~~~ 241 (252)
|+|+|+++++++||+.|++ +||++||++++++||..+.++....+.+++|++|+++... .+++++.++++.+++....
T Consensus 163 aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~~~ 242 (261)
T 1iru_C 163 CIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEE 242 (261)
T ss_dssp EESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHHT
T ss_pred EeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHHHh
Confidence 9999999999999999999 9999999999999999998764444567999999986222 3899999999999987754
Q ss_pred c
Q psy14445 242 S 242 (252)
Q Consensus 242 ~ 242 (252)
.
T Consensus 243 ~ 243 (261)
T 1iru_C 243 E 243 (261)
T ss_dssp T
T ss_pred c
Confidence 3
No 8
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=2.4e-62 Score=422.36 Aligned_cols=233 Identities=27% Similarity=0.453 Sum_probs=219.8
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhh
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISA 83 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D 83 (252)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++++ +++.+||++|++||+|+ +|..+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 3 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred CccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 4899999999999999999999999999999999999999999999999999988 88899999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEE
Q psy14445 84 GRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGC 163 (252)
Q Consensus 84 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~ 163 (252)
++.+.++++.+++.|++++++++|++.+++++++++|.|+++++.|||++++||||||+++||+||.+||+|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAI 162 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999994489999999999999999999
Q ss_pred EecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEE--ecCCC--eEEecChhHHHHHHHHH
Q psy14445 164 AIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVG--EKTNG--KFEMVPQSFLEECENYA 239 (252)
Q Consensus 164 a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~--~~~~~--~~~~~~~~~~~~~~~~~ 239 (252)
|+|+|+++++++||+.|+++||++||++++++||..+.++...++..+||++|+ ++ +. .|+.+++++++++++..
T Consensus 163 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~-~~~~~~~~l~~~ei~~~~~~~ 241 (244)
T 1ryp_C 163 SVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAN-DGEVYQKIFKPQEIKDILVKT 241 (244)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSS-SSSCEEEECCHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecC-CCceeEEECCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987623345789999999 75 33 39999999999998654
No 9
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2.1e-62 Score=419.91 Aligned_cols=229 Identities=30% Similarity=0.463 Sum_probs=208.8
Q ss_pred CCCCCCCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ec
Q psy14445 1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SG 79 (252)
Q Consensus 1 ms~~~~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG 79 (252)
||+ ++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++||+|+ +|
T Consensus 3 m~~--~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG 80 (233)
T 1yar_A 3 QGQ--MAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSG 80 (233)
T ss_dssp ------------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEE
T ss_pred ccc--ccCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEee
Confidence 554 689999999999999999999999999999999999999999999999999977778899999999999999 99
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceec
Q psy14445 80 LISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHG 159 (252)
Q Consensus 80 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~ 159 (252)
..+|++.+.++++.+++.|++++++++|++.+++++++++|.|+++++.|||++++||||||+ +||+||.+||+|++.+
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~ 159 (233)
T 1yar_A 81 LVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINE 159 (233)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEe
Confidence 999999999999999999999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred ccEEEecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHH
Q psy14445 160 YFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEEC 235 (252)
Q Consensus 160 ~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~ 235 (252)
++++|+|+|+++++++||+.|+++||++||++++++||..+.++.. ++..+||++|+++ +.++++++++++++
T Consensus 160 ~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~--~~~~~~~~~ei~~~ 232 (233)
T 1yar_A 160 YKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVG--NKYRIYDQEEVKKF 232 (233)
T ss_dssp BSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETT--SCCEECCHHHHHTT
T ss_pred eeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECC--CCEEECCHHHHHhh
Confidence 9999999999999999999999999999999999999999986633 3567999999985 45999999998875
No 10
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=4.1e-62 Score=420.19 Aligned_cols=228 Identities=33% Similarity=0.532 Sum_probs=216.4
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhH
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAG 84 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~ 84 (252)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.+++++++.+||++|++||+|+ +|..+|+
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 85 (241)
T 1iru_E 6 SEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADA 85 (241)
T ss_dssp --CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeChHHH
Confidence 689999999999999999999999999999999999999999999999999998878899999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCC-----ccCceeeEEEEEEeCCCCceEEEECCCCceec
Q psy14445 85 RQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSM-----VRPFGASLLLASHDKTDGPSLYVVDPSGVSHG 159 (252)
Q Consensus 85 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~-----~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~ 159 (252)
+.+.++++.+++.|++++++++|++.+++++++++|.|+++.+ .|||++++||||||+ +||+||.+||+|++.+
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~ 164 (241)
T 1iru_E 86 KTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQ 164 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEECCCCcEEe
Confidence 9999999999999999999999999999999999999998877 899999999999996 8999999999999999
Q ss_pred ccEEEecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHH
Q psy14445 160 YFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECEN 237 (252)
Q Consensus 160 ~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~ 237 (252)
++++|+|+|+++++++||+.|+++||++||++++++||..+.++ ..++.+++|++|+++ +.|+++++++++++++
T Consensus 165 ~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~--~~~~~l~~~ei~~~~~ 239 (241)
T 1iru_E 165 CDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPG--QNFHMFTKEELEEVIK 239 (241)
T ss_dssp BSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSS--SCCEECCHHHHHHHHT
T ss_pred cceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECC--CCeEECCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 445678999999985 4499999999999884
No 11
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=8e-62 Score=416.37 Aligned_cols=228 Identities=32% Similarity=0.465 Sum_probs=216.1
Q ss_pred CCCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhh
Q psy14445 5 GAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISA 83 (252)
Q Consensus 5 ~~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D 83 (252)
.++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.++..+++.+||++|++||+|+ +|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 4689999999999999999999999999999999999999999999999997766678899999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEE
Q psy14445 84 GRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGC 163 (252)
Q Consensus 84 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~ 163 (252)
++.+.++++.+++.|+++++.+++++.+++++++++|.|+++++.|||++++||||||+ +||+||.+||+|++.+++++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~ 160 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKAT 160 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEE
Confidence 99999999999999999999999999999999999999999989999999999999996 89999999999999999999
Q ss_pred EecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHH
Q psy14445 164 AIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECEN 237 (252)
Q Consensus 164 a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~ 237 (252)
|+|+|+++++++||+.|+++||++||++++++||..+.++. .++..+||++|+++ + ++++++++++++++
T Consensus 161 aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~--g-~~~l~~~ei~~~~~ 230 (233)
T 1iru_B 161 AMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEA--G-FRRLTPTEVKDYLA 230 (233)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETT--E-EEECCHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECC--C-EEECCHHHHHHHHH
Confidence 99999999999999999999999999999999999998664 33457999999984 5 99999999999874
No 12
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.5e-61 Score=417.97 Aligned_cols=230 Identities=34% Similarity=0.514 Sum_probs=218.8
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhH
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAG 84 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~ 84 (252)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.+++.+++.+||++|++||+|+ +|..+|+
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~ 85 (246)
T 1j2p_A 6 MGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADA 85 (246)
T ss_dssp TTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHHH
T ss_pred cCcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHHH
Confidence 589999999999999999999999999999999999999999999999999987777899999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEE
Q psy14445 85 RQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCA 164 (252)
Q Consensus 85 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a 164 (252)
+.+.++++.+++.|++++++++|++.+++++++.+|.|+++.+.|||++++|||||| +||+||.+||+|++.+++++|
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~a 163 (246)
T 1j2p_A 86 RVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATA 163 (246)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEE
Confidence 999999999999999999999999999999999999999998999999999999999 799999999999999999999
Q ss_pred ecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEE-ecCCCeEEecChhHHHHHHHHHH
Q psy14445 165 IGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVG-EKTNGKFEMVPQSFLEECENYAK 240 (252)
Q Consensus 165 ~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~-~~~~~~~~~~~~~~~~~~~~~~~ 240 (252)
+|+|+++++++||+.|+++||++||++++++||..+.++ ..++.+++|++|+ ++ + .++++++++++++++...
T Consensus 164 iGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~-~-~~~~l~~~ei~~~~~~~~ 237 (246)
T 1j2p_A 164 IGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDD-R-TFKEVSPEELKPYVERAN 237 (246)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTT-C-CCEECCHHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCC-C-ceEECCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 5556789999999 52 3 499999999999987654
No 13
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=2.5e-61 Score=415.28 Aligned_cols=228 Identities=31% Similarity=0.459 Sum_probs=217.2
Q ss_pred CCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCC-CceeEEEecCeeEEe-ecchhhH
Q psy14445 7 GYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPG-ANKRIFHVDTHIGLG-SGLISAG 84 (252)
Q Consensus 7 ~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~-~~~Ki~~i~~~i~~~-sG~~~D~ 84 (252)
+||+++|+|||||||||||||+||+++|+|+|||+++||||||+|+|.+.++++.+ +.+||++|++||+|+ +|..+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 59999999999999999999999999999999999999999999999999998855 889999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCC-CCceEEEECCCCceecccEE
Q psy14445 85 RQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKT-DGPSLYVVDPSGVSHGYFGC 163 (252)
Q Consensus 85 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~-~gp~Ly~id~~G~~~~~~~~ 163 (252)
+.+.++++.+++.|+++++++++++.+|+++++++|.|+++++.|||++++||||||++ +||+||.+||+|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~ 160 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQ 160 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeE
Confidence 99999999999999999999999999999999999999998889999999999999985 78999999999999999999
Q ss_pred EecCChhhhhHHHHHhc---CCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHH
Q psy14445 164 AIGKAKQNAKTEIEKLK---LSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYA 239 (252)
Q Consensus 164 a~G~g~~~~~~~Le~~~---~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~ 239 (252)
|+|+|+++++++||+.| +++||++||++++++||..+.+ .+ +.++||++|+++ +.++++++++++++++..
T Consensus 161 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~-~s--g~~i~v~vi~~~--~~~~~l~~~ei~~~~~~~ 234 (241)
T 1ryp_D 161 TIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ-TG--AKNIEITVVKPD--SDIVALSSEEINQYVTQI 234 (241)
T ss_dssp EESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC-SC--STTEEEEEEETT--TEEEECCHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc-CC--CCcEEEEEEECC--CcEEECCHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999997 44 357999999985 459999999999998765
No 14
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=6.5e-62 Score=420.65 Aligned_cols=228 Identities=29% Similarity=0.444 Sum_probs=216.3
Q ss_pred CCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhHHH
Q psy14445 8 YDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQ 86 (252)
Q Consensus 8 yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~~~ 86 (252)
||+++|+|||||||||||||++|+++|+|+|||+++||||||+|+|.+.+++.+++.+|||+|++||+|+ +|..+|++.
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 82 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARI 82 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHH
Confidence 9999999999999999999999999999999999999999999999999976677899999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEec
Q psy14445 87 LAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIG 166 (252)
Q Consensus 87 l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G 166 (252)
+.++++.+++.|++++++++|++.+++++++++|.|+++++.|||++++||||||+++||+||.+||+|++.+++++|+|
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 162 (248)
T 1iru_D 83 VINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIG 162 (248)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEEC
Confidence 99999999999999999999999999999999999999988999999999999995489999999999999999999999
Q ss_pred CChhhhhHHHHHhcCCCC--CHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHHH
Q psy14445 167 KAKQNAKTEIEKLKLSTL--SMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAK 240 (252)
Q Consensus 167 ~g~~~~~~~Le~~~~~~~--s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~~ 240 (252)
+|+++++++||+.|+++| |++||++++++||..+.+ .+ +..+||++|+++ +.++++++++++++++...
T Consensus 163 ~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~-~s--g~~i~v~vi~~~--g~~~~l~~~ei~~~~~~~~ 233 (248)
T 1iru_D 163 RGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ-SG--GKNIELAVMRRD--QSLKILNPEEIEKYVAEIE 233 (248)
T ss_dssp TTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC-TT--STTCCEEEEESS--SCEECCCHHHHHHHTTTTT
T ss_pred CCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc-CC--CCcEEEEEEECC--CcEEECCHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999987 33 346899999984 4699999999999987554
No 15
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=2.7e-61 Score=415.30 Aligned_cols=230 Identities=33% Similarity=0.471 Sum_probs=217.8
Q ss_pred CCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhHHHH
Q psy14445 9 DLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQL 87 (252)
Q Consensus 9 d~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l 87 (252)
|+++|+|||||||||||||++|+++|+|+|||+++||||||+|+|.+++++++++.+||++|++||+|+ +|..+|++.+
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 80 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM 80 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHH
Confidence 788999999999999999999999999999999999999999999999998877889999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCC------ccCceeeEEEEEEeCCCCceEEEECCCCceeccc
Q psy14445 88 AETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSM------VRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYF 161 (252)
Q Consensus 88 ~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~------~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~ 161 (252)
.++++.+++.|++++++++|++.+++++++++|.|+++.+ .|||++++||||||+.+||+||.+||+|++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (242)
T 1ryp_E 81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYN 160 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccC
Confidence 9999999999999999999999999999999999999887 8999999999999954899999999999999999
Q ss_pred EEEecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHHHh
Q psy14445 162 GCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKA 241 (252)
Q Consensus 162 ~~a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (252)
++|+|+|+.+++++||+.|+++||++||++++++||..+.++ ..++.++||++|+++ +.|+++++++++++++....
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~--~~~~~~~~~ei~~~~~~~~~ 237 (242)
T 1ryp_E 161 AKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQ--DGFKIYDNEKTAELIKELKE 237 (242)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETT--TEEEECCHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECC--CCeEECCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999987 445568999999984 55999999999999976543
No 16
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=7.6e-61 Score=414.42 Aligned_cols=231 Identities=32% Similarity=0.431 Sum_probs=216.0
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhH
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAG 84 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~ 84 (252)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.++..+++.+||++|++||+|+ +|..+|+
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 82 (250)
T 1ryp_B 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDY 82 (250)
T ss_dssp CCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHH
T ss_pred CcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHH
Confidence 479999999999999999999999999999999999999999999999986666678899999999999999 9999999
Q ss_pred HHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEE
Q psy14445 85 RQLAETAKTEASE-YRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGC 163 (252)
Q Consensus 85 ~~l~~~~r~~~~~-~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~ 163 (252)
+.+.++++.+++. |+..++.+++++.+++.++++++.++++.+.|||++++||||||+++||+||.+||+|++.+++++
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (250)
T 1ryp_B 83 RVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKAT 162 (250)
T ss_dssp HHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeecee
Confidence 9999999999999 999999999999999999999999999888999999999999997679999999999999999999
Q ss_pred EecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEec-------------CCCeEEecChh
Q psy14445 164 AIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEK-------------TNGKFEMVPQS 230 (252)
Q Consensus 164 a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~-------------~~~~~~~~~~~ 230 (252)
|+|+|+++++++||+.|+++||++||++++++||..+.++ ..++..++|++|+++ ++..|++++++
T Consensus 163 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (250)
T 1ryp_B 163 AIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEG-EFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQ 241 (250)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCS-CCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHH
T ss_pred EecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcc-ccCCCCEEEEEEEccccccccccccccCCCCCeEECCHH
Confidence 9999999999999999999999999999999999999866 223467999999985 23459999999
Q ss_pred HHHHHHH
Q psy14445 231 FLEECEN 237 (252)
Q Consensus 231 ~~~~~~~ 237 (252)
+++++++
T Consensus 242 ei~~~l~ 248 (250)
T 1ryp_B 242 EINDRLE 248 (250)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999884
No 17
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=5.2e-61 Score=411.39 Aligned_cols=225 Identities=27% Similarity=0.392 Sum_probs=210.5
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhH
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAG 84 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~ 84 (252)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.++. ++.+||++|++||+|+ +|..+|+
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (233)
T 1ryp_F 3 NNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPDA 80 (233)
T ss_dssp HHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHH
T ss_pred CcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHHH
Confidence 469999999999999999999999999999999999999999999999999875 4779999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEE
Q psy14445 85 RQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCA 164 (252)
Q Consensus 85 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a 164 (252)
+.+.++++.+++.|++++++++|++.+++++++++|.|||+.+.|||++++||||||+ .||+||++||+|++.+++++|
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~a 159 (233)
T 1ryp_F 81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTA 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred ecCChhhhhHHHHHhcCC--CC--CHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHH
Q psy14445 165 IGKAKQNAKTEIEKLKLS--TL--SMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEEC 235 (252)
Q Consensus 165 ~G~g~~~~~~~Le~~~~~--~~--s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~ 235 (252)
+|+|+++++++||+.|++ +| |++||++++++||..+.++...++.++||++|+++ ++ ++++++++++++
T Consensus 160 iG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~~d~~~s~~~i~v~vi~~~-~~-~~~l~~~ei~~~ 232 (233)
T 1ryp_F 160 IGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKD-TP-FTIYDGEAVAKY 232 (233)
T ss_dssp ESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETT-EE-EEEEEGGGGGGG
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEECC-CC-EEECCHHHHHhh
Confidence 999999999999999998 99 99999999999999998431223567999999985 34 899999988765
No 18
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=2.9e-60 Score=413.56 Aligned_cols=229 Identities=26% Similarity=0.382 Sum_probs=215.7
Q ss_pred CCCCCCccccCCCCccchhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhH
Q psy14445 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAG 84 (252)
Q Consensus 6 ~~yd~~~t~fspeGrl~Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~ 84 (252)
++||+++|+|||||||||||||+||+++|+|+|||+++||||||+|+|.+.++. ++.+||++|++||+|+ +|..+|+
T Consensus 4 ~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD~ 81 (263)
T 1iru_F 4 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTADA 81 (263)
T ss_dssp CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHH
T ss_pred CCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHHH
Confidence 689999999999999999999999999999999999999999999999999975 4779999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEE
Q psy14445 85 RQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCA 164 (252)
Q Consensus 85 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a 164 (252)
+.+.++++.+++.|++++++++|++.+++++++++|.|+|+++.|||++++||||||+ +||+||.+||+|++.+++++|
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~a 160 (263)
T 1iru_F 82 RLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMS 160 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred ecCChhhhhHHHHHhcCC--CCCHHHHHHHHHHHHHHHhhcc-CCCcceEEEEEEEecCCCeEEecChhHHHHHHHHH
Q psy14445 165 IGKAKQNAKTEIEKLKLS--TLSMEQLAKEAARIIYVVHDEL-KDKHFELELAWVGEKTNGKFEMVPQSFLEECENYA 239 (252)
Q Consensus 165 ~G~g~~~~~~~Le~~~~~--~~s~~eai~la~~al~~~~~~~-~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~ 239 (252)
+|+|+++++++||+.|++ +||++||++++++||..+.++. ..++..+||++|+++ +.+++++++++++++...
T Consensus 161 iGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~--~~~~~l~~~ei~~~~~~~ 236 (263)
T 1iru_F 161 IGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD--LEFTIYDDDDVSPFLEGL 236 (263)
T ss_dssp ESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETT--EEEEEECSGGGHHHHTTC
T ss_pred cCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECC--CCeEECCHHHHHHHHHHH
Confidence 999999999999999997 9999999999999999998654 234567999999985 349999999999998654
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=7.9e-51 Score=353.25 Aligned_cols=216 Identities=16% Similarity=0.180 Sum_probs=191.7
Q ss_pred ccccCCCCccc-hhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhHHHHHH
Q psy14445 12 ASQFSPDGRVF-QVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQLAE 89 (252)
Q Consensus 12 ~t~fspeGrl~-Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~ 89 (252)
+..|||||++. |||||++|+++|+|+|||+++||||||+|+| +++.+|||+|++||+|+ +|..+|++.+.+
T Consensus 4 p~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~ 76 (259)
T 1q5q_A 4 PYYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRR 76 (259)
T ss_dssp -----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHH
Confidence 45689999995 9999999999999999999999999999998 35789999999999999 999999999999
Q ss_pred HHHHHHHHHHHhcC-CCCCHHHHHHHHHH-HHHHhcccCCccCceeeEEEEEEe--C-CCCceEEEECCCCcee-cccEE
Q psy14445 90 TAKTEASEYRSKYG-GNIPLHLLNERVSM-YVHAYTLYSMVRPFGASLLLASHD--K-TDGPSLYVVDPSGVSH-GYFGC 163 (252)
Q Consensus 90 ~~r~~~~~~~~~~~-~~i~~~~la~~l~~-~~~~~t~~~~~rP~~~~~iiaG~D--~-~~gp~Ly~id~~G~~~-~~~~~ 163 (252)
+++.+++.|++.++ .+++++.+++++++ +.|.|+ .+.|||++++|||||| + .+||+||++||+|++. .++++
T Consensus 77 ~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt--~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~ 154 (259)
T 1q5q_A 77 AGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT--EQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFV 154 (259)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH--HSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEE
T ss_pred HHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhc--cCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEE
Confidence 99999999999988 49999999999999 667787 3679999999999999 2 4899999999999999 88999
Q ss_pred EecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHh-----hccCCCcceEEEEEEEec-CCCeEEecChhHHHHHHH
Q psy14445 164 AIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVH-----DELKDKHFELELAWVGEK-TNGKFEMVPQSFLEECEN 237 (252)
Q Consensus 164 a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~-----~~~~~~~~~iev~~i~~~-~~~~~~~~~~~~~~~~~~ 237 (252)
|+|+|++.++++||+.|+++||++||++++++||..+. ++.. ++..+||++|+++ .++.|+.++.+++++++.
T Consensus 155 aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~ 233 (259)
T 1q5q_A 155 VMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGTALEQLVP 233 (259)
T ss_dssp EESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECCHHHHHTTSC
T ss_pred EECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECCHHHHHHHHH
Confidence 99999999999999999999999999999999999988 5533 4567999999985 223699999999998774
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.3e-49 Score=343.13 Aligned_cols=208 Identities=15% Similarity=0.177 Sum_probs=186.9
Q ss_pred hhhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCcccCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHh
Q psy14445 23 QVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSK 101 (252)
Q Consensus 23 Qveya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~ 101 (252)
++|||+||+++|+|+|||+++||||||+|+| +++.+|||+|++||+|+ +|..+|++.+.+.++.+++.|+++
T Consensus 16 r~EYA~~av~~GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~ 88 (248)
T 3mi0_A 16 RSELARKGIARAKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYA 88 (248)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999 35789999999999999 999999999999999999999999
Q ss_pred cC-CCCCHHHHHHHHH-HHHHHhcccCCccCceeeEEEEEEeC---CCCceEEEECCCCceec-ccEEEecCChhhhhHH
Q psy14445 102 YG-GNIPLHLLNERVS-MYVHAYTLYSMVRPFGASLLLASHDK---TDGPSLYVVDPSGVSHG-YFGCAIGKAKQNAKTE 175 (252)
Q Consensus 102 ~~-~~i~~~~la~~l~-~~~~~~t~~~~~rP~~~~~iiaG~D~---~~gp~Ly~id~~G~~~~-~~~~a~G~g~~~~~~~ 175 (252)
++ .+++++.|+++++ .+.|.|+| +.|||+|++||||||+ .+||+||++||+|++.. ++++|+|+|++.++++
T Consensus 89 ~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~ 166 (248)
T 3mi0_A 89 YDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANA 166 (248)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHH
Confidence 99 9999999999999 77888987 6899999999999997 47999999999999995 9999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHh-------hccCCCcceEEEEEEEecC-CCeEEecChhHHHHHHHHHH
Q psy14445 176 IEKLKLSTLSMEQLAKEAARIIYVVH-------DELKDKHFELELAWVGEKT-NGKFEMVPQSFLEECENYAK 240 (252)
Q Consensus 176 Le~~~~~~~s~~eai~la~~al~~~~-------~~~~~~~~~iev~~i~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (252)
||++|+++||++||++++++||..+. ++ ..++.++||++|+++. +..|+++++++++.+++...
T Consensus 167 Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~-~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 167 LKESYAENASLTDALRIAVAALRAGSADTSGGDQP-TLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQE 238 (248)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCccc-ccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence 99999999999999999999999998 33 2334679999999963 35699999999999987654
No 21
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.3e-46 Score=319.30 Aligned_cols=205 Identities=20% Similarity=0.243 Sum_probs=185.9
Q ss_pred CCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q psy14445 34 SSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLL 111 (252)
Q Consensus 34 G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~l 111 (252)
|+|+|||+++||||||+|+|.+.+.++ +++.+|||+|++||+|+ +|..+|++.+.++++.+++.|++++++++|++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 789999999999999999999998664 78899999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceeccc-EEEecCChhhhhHHHHHhcCCCCCHHHHH
Q psy14445 112 NERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYF-GCAIGKAKQNAKTEIEKLKLSTLSMEQLA 190 (252)
Q Consensus 112 a~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~eai 190 (252)
++++++++|.++ .|||++++||||||+.+||+||++||+|++.+++ ++|+|+|+++++++||+.|+++||++||+
T Consensus 81 a~~l~~~~~~~~----~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~ 156 (219)
T 3h4p_a 81 ATLLSNILHSSR----MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGI 156 (219)
T ss_dssp HHHHHHHHHHTT----TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHH
T ss_pred HHHHHHHHHHhc----CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 999999998863 5899999999999986799999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHHHhcccC
Q psy14445 191 KEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKASLQD 245 (252)
Q Consensus 191 ~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (252)
+++++||..+.++....+..+||++|+++ | +++++.+++++++.....-+++
T Consensus 157 ~la~~al~~~~~rd~~sg~~i~v~vi~~~--g-~~~l~~~ei~~~l~~~~~~~~~ 208 (219)
T 3h4p_a 157 KLALNALKSAMERDTFSGNGISLAVITKD--G-VKIFEDEEIEKILDSMKAKPKK 208 (219)
T ss_dssp HHHHHHHHHHHTSCSSCCSCCCEEEEETT--E-EEECCHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEeCC--C-eEEcCHHHHHHHHHHhhccccc
Confidence 99999999999764444457999999984 5 9999999999999876654443
No 22
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=4.3e-46 Score=315.63 Aligned_cols=205 Identities=20% Similarity=0.305 Sum_probs=183.3
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCC
Q psy14445 29 KAVENSSTAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNI 106 (252)
Q Consensus 29 ~av~~G~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 106 (252)
+++++|+|+|||+++||||||+|+|.+++.+ .+++.+||++|+++++|+ +|..+|++.+.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999999999999998654 478899999999999999 99999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCH
Q psy14445 107 PLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSM 186 (252)
Q Consensus 107 ~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 186 (252)
|++.+++++++.+|.+ +.|||++++|||||| +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||+
T Consensus 83 ~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~ 156 (217)
T 1yar_H 83 PIEAVATLLSNMLNQV----KYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTV 156 (217)
T ss_dssp CHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred CHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCH
Confidence 9999999999999875 368999999999999 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHHHh
Q psy14445 187 EQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKA 241 (252)
Q Consensus 187 ~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (252)
+||++++++||..+.++...++..+||++|+++ ++ ++.+++++++++++....
T Consensus 157 eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~-~g-~~~~~~~ei~~~~~~~~~ 209 (217)
T 1yar_H 157 DEGVDLVIRAISAAKQRDSASGGMIDVAVITRK-DG-YVQLPTDQIESRIRKLGL 209 (217)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETT-TE-EEECCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEECC-CC-EEEcCHHHHHHHHHHHHH
Confidence 999999999999998663333456999999984 35 889999999999976554
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=3.4e-45 Score=306.68 Aligned_cols=196 Identities=22% Similarity=0.300 Sum_probs=181.4
Q ss_pred CcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.+++.+ .+++.+|||+|++|++|+ +|..+|++.+.++++.+++.|++++++++|++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999998654 478899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceeccc-EEEecCChhhhhHHHHHhcCCCCCHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYF-GCAIGKAKQNAKTEIEKLKLSTLSMEQLAK 191 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~eai~ 191 (252)
+++++.+|.+ +.|||++++||||||+ +||+||.+||+|++.+++ ++|+|+|+++++++||+.|+++||++||++
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~ 155 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVE 155 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHH
Confidence 9999999874 3689999999999998 799999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHH
Q psy14445 192 EAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENY 238 (252)
Q Consensus 192 la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~ 238 (252)
++++||..+.++...++.++||++|+++ + ++.+++++++++++.
T Consensus 156 la~~al~~~~~~d~~s~~~i~v~vi~~~--g-~~~l~~~ei~~~~~~ 199 (202)
T 1j2q_H 156 LAVRAIYSAMKRDSASGDGIDVVKITED--E-FYQYSPEEVEQILAK 199 (202)
T ss_dssp HHHHHHHHHHTTCTTSCSCEEEEEECSS--C-EEECHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEEeCC--C-eEEeCHHHHHHHHHH
Confidence 9999999998663334457999999984 5 889999999998853
No 24
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=2.2e-45 Score=322.66 Aligned_cols=208 Identities=14% Similarity=0.116 Sum_probs=182.9
Q ss_pred hhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhc
Q psy14445 25 EYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKY 102 (252)
Q Consensus 25 eya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~ 102 (252)
.++..++++|+|+|||+++||||||+|+|.+.|.++ +++.+||++|++||+|+ +|..+|++.+.++++.+++.|++++
T Consensus 66 ~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~ 145 (287)
T 3nzj_K 66 PDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELRE 145 (287)
T ss_dssp ----------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 377889999999999999999999999999987654 78899999999999999 9999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCC
Q psy14445 103 GGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLS 182 (252)
Q Consensus 103 ~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~ 182 (252)
+++++++.+++++++++|.+++ +||++++||||||+.+||+||++||+|++.+++++|+|+|+++++++||+.|++
T Consensus 146 ~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~ 221 (287)
T 3nzj_K 146 KERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW 221 (287)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCT
T ss_pred CCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcC
Confidence 9999999999999999998875 499999999999965899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHH
Q psy14445 183 TLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYA 239 (252)
Q Consensus 183 ~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~ 239 (252)
+||++||++++++||..+.++....+..++|++|+++ | +++++.+++++++...
T Consensus 222 dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkd--g-~~~l~~~ev~~~l~~~ 275 (287)
T 3nzj_K 222 DLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTED--G-WIYHGNHDVGELFWKV 275 (287)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT--E-EEEEEEEEHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCC--C-EEEeCHHHHHHHHHHH
Confidence 9999999999999999998664444567999999984 5 8888888888876543
No 25
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.6e-45 Score=309.29 Aligned_cols=197 Identities=12% Similarity=0.098 Sum_probs=182.4
Q ss_pred CcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.+++.+ .+++.+|||+|++|++|+ +|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999999954 477889999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
+++++.+|.+++ ||++++||||||+++||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l 155 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQF 155 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999998874 999999999999867999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHH
Q psy14445 193 AARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECEN 237 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~ 237 (252)
+++||..+.++...++.++||++|+++ +..+++++.++++.++.
T Consensus 156 ~~~al~~~~~~d~~s~~~i~v~vi~~~-g~~~~~l~~~ei~~~~~ 199 (205)
T 1iru_H 156 TANALALAMERDGSSGGVIRLAAIAES-GVERQVLLGDQIPKFAV 199 (205)
T ss_dssp HHHHHHHHHHHBTTCCSCEEEEEEETT-EEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHhccccCCcEEEEEEeCC-CeEEEEeChHHhhHHHh
Confidence 999999998764444567999999985 44588999999887764
No 26
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=6.4e-45 Score=307.21 Aligned_cols=204 Identities=15% Similarity=0.122 Sum_probs=186.3
Q ss_pred CcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.+++.+ .+++.+||++|++|++|+ +|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5899999999999999999998654 478899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
+++++.+|.++++ ||++++||||||+++||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~~----p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 156 (212)
T 1ryp_L 81 KILSNLVYQYKGA----GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 156 (212)
T ss_dssp HHHHHHHHHTTTS----CCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCCC----CceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 9999999998863 999999999999557999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHHHhcccC
Q psy14445 193 AARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKASLQD 245 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (252)
+++||..+.++...++..++|++|+++ + +++++++++++++.......+.
T Consensus 157 a~~al~~~~~rd~~s~~~i~v~vi~~~--g-~~~~~~~ei~~~~~~~~~~~~~ 206 (212)
T 1ryp_L 157 GKRSILAAAHRDAYSGGSVNLYHVTED--G-WIYHGNHDVGELFWKVKEEEGS 206 (212)
T ss_dssp HHHHHHHHHHHBTTCCSEEEEEEEETT--E-EEEEEEEEHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCC--c-eEEECHHHHHHHHHHHHHhhhh
Confidence 999999998764445568999999973 5 8889999999998766554443
No 27
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=5.3e-45 Score=321.29 Aligned_cols=209 Identities=15% Similarity=0.110 Sum_probs=189.6
Q ss_pred HHHHHhcCCcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCC
Q psy14445 27 AQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGG 104 (252)
Q Consensus 27 a~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~ 104 (252)
|+||+++|+|+|||+++||||||+|+|.+.+.+ .+++.+|||+|++||+|+ +|..+|++.++++++.+++.|++++++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 889999999999999999999999999998654 478899999999999999 999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCC-----ceEEEECCCCceecc--cEEEecCChhhhhHHHH
Q psy14445 105 NIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDG-----PSLYVVDPSGVSHGY--FGCAIGKAKQNAKTEIE 177 (252)
Q Consensus 105 ~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~g-----p~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le 177 (252)
+++++.++++|++++|.++++. .|||++++||||||+.+| |+||++||+|++.++ +++|+|+|+++++++||
T Consensus 138 ~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le 216 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALK 216 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHH
Confidence 9999999999999999988764 799999999999998557 999999999999999 89999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhccCC--CcceE-----EEEEEEecCCCeEEecChhHHHHHHHHH
Q psy14445 178 KLKLSTLSMEQLAKEAARIIYVVHDELKD--KHFEL-----ELAWVGEKTNGKFEMVPQSFLEECENYA 239 (252)
Q Consensus 178 ~~~~~~~s~~eai~la~~al~~~~~~~~~--~~~~i-----ev~~i~~~~~~~~~~~~~~~~~~~~~~~ 239 (252)
+.|+++|+++||++++++||..+.++... ....+ ||++|++ +| +++++.++++++++..
T Consensus 217 ~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~--~g-~~~l~~~ei~~~l~~i 282 (294)
T 1q5r_H 217 KIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQ--AG-AVHVSEETTSELARRI 282 (294)
T ss_dssp HHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEET--TE-EEECCHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEEC--CC-EEEcCHHHHHHHHHHH
Confidence 99999999999999999999999865222 22225 8999997 35 8889999999999765
No 28
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=6.1e-45 Score=320.62 Aligned_cols=230 Identities=16% Similarity=0.126 Sum_probs=172.8
Q ss_pred CCCCCCCccccCCCCcc-----ch--hhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEE
Q psy14445 5 GAGYDLSASQFSPDGRV-----FQ--VEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGL 76 (252)
Q Consensus 5 ~~~yd~~~t~fspeGrl-----~Q--veya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~ 76 (252)
.+.|+..+....||.-. +| +|||++ +++|+|+|||+++||||||+|+|.+.+.++ +++.+|||+|++|++|
T Consensus 22 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~ 100 (291)
T 2jay_A 22 LSSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTAT 100 (291)
T ss_dssp -------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEE
T ss_pred CccHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEE
Confidence 35677777888777543 23 689999 999999999999999999999999998655 6789999999999999
Q ss_pred e-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCC-----ceEEE
Q psy14445 77 G-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDG-----PSLYV 150 (252)
Q Consensus 77 ~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~g-----p~Ly~ 150 (252)
+ +|..+|++.+.++++.+++.|++.++.+++++.+++.+++++|.+++ ...|||++++||||||+.++ |+||+
T Consensus 101 ~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~ 179 (291)
T 2jay_A 101 GIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVS 179 (291)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEE
T ss_pred EEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEE
Confidence 9 99999999999999999999999999999999999999999998875 45789999999999998556 89999
Q ss_pred ECCCCcee--cccEEEecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc-cCCCcce-E-----EEEEEEecCC
Q psy14445 151 VDPSGVSH--GYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDE-LKDKHFE-L-----ELAWVGEKTN 221 (252)
Q Consensus 151 id~~G~~~--~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~~-~~~~~~~-i-----ev~~i~~~~~ 221 (252)
+||+|++. .++++|+|+|+++++++||+.|+++||++||++++++||..+.++ ...++.+ + +|++|+++
T Consensus 180 iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~d-- 257 (291)
T 2jay_A 180 FDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDAD-- 257 (291)
T ss_dssp ECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETT--
T ss_pred ECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECC--
Confidence 99999998 899999999999999999999999999999999999999999865 2222211 2 69999984
Q ss_pred CeEEecChhHHHHHHHHH
Q psy14445 222 GKFEMVPQSFLEECENYA 239 (252)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~ 239 (252)
+ ++.++.++++++++..
T Consensus 258 g-~~~l~~~ei~~~~~~~ 274 (291)
T 2jay_A 258 G-AVDVPESRIAELARAI 274 (291)
T ss_dssp E-EEECCHHHHHHHHHHC
T ss_pred C-eEEcCHHHHHHHHHHH
Confidence 5 8889999999998754
No 29
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=2.8e-45 Score=310.88 Aligned_cols=201 Identities=18% Similarity=0.123 Sum_probs=182.7
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHH-hcCCC
Q psy14445 29 KAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRS-KYGGN 105 (252)
Q Consensus 29 ~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~-~~~~~ 105 (252)
+|+++|+|+|||+++||||||+|+|.+.+.++ +++.+||++|++|++|+ +|..+|++.+.++++.+++.|++ +++++
T Consensus 3 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (219)
T 1iru_N 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHS 82 (219)
T ss_dssp SCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred CCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 57889999999999999999999999986654 78899999999999999 99999999999999999999998 89999
Q ss_pred CCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCC--C
Q psy14445 106 IPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLS--T 183 (252)
Q Consensus 106 i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~ 183 (252)
++++.+++++++.++. ++.+.|||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|++ +
T Consensus 83 ~~v~~la~~l~~~ly~--~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ 159 (219)
T 1iru_N 83 YSPRAIHSWLTRAMYS--RRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 159 (219)
T ss_dssp CCHHHHHHHHHHHHHH--HHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSC
T ss_pred CCHHHHHHHHHHHHHH--hcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCC
Confidence 9999999999999954 4567899999999999998 799999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHH
Q psy14445 184 LSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEEC 235 (252)
Q Consensus 184 ~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~ 235 (252)
||++||++++++||..+.++....+..++|++|+++ + ++.+++++++..
T Consensus 160 mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~--g-~~~~~~~~i~~~ 208 (219)
T 1iru_N 160 LSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEK--G-VEIEGPLSTETN 208 (219)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETT--E-EEEEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCC--C-EEEcCCeeccch
Confidence 999999999999999998764334457999999984 5 777776665543
No 30
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2.6e-44 Score=301.70 Aligned_cols=197 Identities=17% Similarity=0.193 Sum_probs=182.2
Q ss_pred CcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.+++.+ .+++.+||++|++||+|+ +|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999998655 477899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
+++++.+|.+++ +||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l 155 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDL 155 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHH
Confidence 999999998764 59999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHH
Q psy14445 193 AARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYA 239 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~ 239 (252)
+++||..+.++....+..++|++|+++ + ++.++++++++++...
T Consensus 156 ~~~al~~~~~rd~~s~~~i~v~vi~~~--g-~~~l~~~ei~~~~~~~ 199 (204)
T 1iru_L 156 ARRAIYQATYRDAYSGGAVNLYHVRED--G-WIRVSSDNVADLHEKY 199 (204)
T ss_dssp HHHHHHHHHHHBTTCCSEEEEEEECSS--C-EEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHhCccCCCceEEEEEeCC--c-eEEeCHHHHHHHHHHh
Confidence 999999998664334567999999873 5 7889999999998764
No 31
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=3.5e-44 Score=302.86 Aligned_cols=185 Identities=14% Similarity=0.180 Sum_probs=172.5
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCH
Q psy14445 31 VENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPL 108 (252)
Q Consensus 31 v~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 108 (252)
+++|+|+|||+++||||||+|+|.+.++++ +++.+||++|++||+|+ +|..+|++.+.++++.+++.|++++++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 468999999999999999999999999977 56889999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHh---------
Q psy14445 109 HLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL--------- 179 (252)
Q Consensus 109 ~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~--------- 179 (252)
+.+++++++.+ |+++ .|||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 86 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~ 161 (213)
T 1iru_M 86 GAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNV 161 (213)
T ss_dssp HHHHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSC
T ss_pred HHHHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccccc
Confidence 99999999999 4543 6999999999999975679999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEec
Q psy14445 180 KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEK 219 (252)
Q Consensus 180 ~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~ 219 (252)
|+++||++||++++++||..+.++...++..+||++|+++
T Consensus 162 ~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~ 201 (213)
T 1iru_M 162 EHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKE 201 (213)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCC
Confidence 8899999999999999999999765445568999999984
No 32
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=1.9e-44 Score=302.82 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=173.7
Q ss_pred HHHHhcCCcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCC
Q psy14445 28 QKAVENSSTAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGN 105 (252)
Q Consensus 28 ~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 105 (252)
++|+++|+|+|||+++||||||+|+|.+.+.+ ..++.+||++|++|++|+ +|..+|++.+.++++.+++.|++++++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 57889999999999999999999999999854 467889999999999999 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCC
Q psy14445 106 IPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLS 185 (252)
Q Consensus 106 i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s 185 (252)
++++.+++++++.+|.++++ |++++||||||+++||+||.+||+|++.+++++|+|+|+++++++||+.|+++||
T Consensus 82 ~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s 156 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMS 156 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCC
T ss_pred CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCC
Confidence 99999999999999998752 9999999999976789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEEec
Q psy14445 186 MEQLAKEAARIIYVVHDELKDKHFELELAWVGEK 219 (252)
Q Consensus 186 ~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~ 219 (252)
++||++++++||..+.++....+..++|++|+++
T Consensus 157 ~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~ 190 (205)
T 1ryp_H 157 KEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAA 190 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCC
Confidence 9999999999999998764444467999999985
No 33
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=3.2e-45 Score=313.40 Aligned_cols=203 Identities=16% Similarity=0.151 Sum_probs=183.8
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHH-----h
Q psy14445 29 KAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRS-----K 101 (252)
Q Consensus 29 ~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~-----~ 101 (252)
+|+++|+|+|||+++||||||+|+|.+.+.++ +++.+||++|++||+|+ +|..+|++.+.++++.+++.|++ +
T Consensus 3 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (233)
T 1ryp_N 3 QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLAD 82 (233)
T ss_dssp CCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTT
T ss_pred ccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 57889999999999999999999999987654 77899999999999999 99999999999999999999999 8
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcC
Q psy14445 102 YGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKL 181 (252)
Q Consensus 102 ~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~ 181 (252)
++++++++.+++++++.++. ++.+.|||++++||||||+++||+||.+||+|++.+++++|+|+|+++++++||+.|+
T Consensus 83 ~~~~~~v~~la~~l~~~ly~--~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 160 (233)
T 1ryp_N 83 AEEALEPSYIFEYLATVMYQ--RRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD 160 (233)
T ss_dssp TTTSCCHHHHHHHHHHHHHH--HHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCS
T ss_pred cCCCCCHHHHHHHHHHHHHH--hcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhc
Confidence 99999999999999999854 5566899999999999998569999999999999999999999999999999999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHH
Q psy14445 182 S-----TLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEEC 235 (252)
Q Consensus 182 ~-----~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~ 235 (252)
+ +||++||++++++||..+.++....+..++|++|+++ ++ ++.+++++++++
T Consensus 161 ~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~-~g-~~~~~~~~i~~~ 217 (233)
T 1ryp_N 161 RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKN-TG-LTFKKNLQVENM 217 (233)
T ss_dssp SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT-TE-EEEEEEEECCSC
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECC-CC-eEEcChHhcccc
Confidence 9 9999999999999999999764444567999999983 24 777777666654
No 34
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.4e-43 Score=307.67 Aligned_cols=187 Identities=15% Similarity=0.131 Sum_probs=167.9
Q ss_pred HHHHHhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCC
Q psy14445 27 AQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGG 104 (252)
Q Consensus 27 a~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~ 104 (252)
+.||+++|+|+|||+++||||||+|+|.+.+.++ .++.+|||+|++||+|+ +|..+|++.+.++++.+++.|++++++
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 3689999999999999999999999999998765 77899999999999999 999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCC
Q psy14445 105 NIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTL 184 (252)
Q Consensus 105 ~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 184 (252)
+++++.+++++++.++.| .+||++++||||||+ .||+||++||+|++.+++++|+|+|+++++++||+.|+++|
T Consensus 102 ~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~m 175 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDL 175 (261)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSC
T ss_pred CCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCC
Confidence 999999999999988754 369999999999998 79999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEec
Q psy14445 185 SMEQLAKEAARIIYVVHDELKDKHFELELAWVGEK 219 (252)
Q Consensus 185 s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~ 219 (252)
|++||++++++||..+.++....+.+++|++|+++
T Consensus 176 s~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kd 210 (261)
T 3nzj_H 176 TKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIG 210 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETT
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECC
Confidence 99999999999999998654434467999999985
No 35
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.6e-43 Score=303.21 Aligned_cols=203 Identities=16% Similarity=0.129 Sum_probs=183.9
Q ss_pred CcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.+.+.+ .+++.+||++|+++++|+ +|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 6899999999999999999998654 478899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCC-----ceEEEECCCCceecc--cEEEecCChhhhhHHHHHhcCCCCC
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDG-----PSLYVVDPSGVSHGY--FGCAIGKAKQNAKTEIEKLKLSTLS 185 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~g-----p~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~s 185 (252)
+.|++++|.++++. .|||++++||||||+++| |+||.+||+|++.++ +++|+|+|+++++++||+.|+++||
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 159 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSD 159 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCC
Confidence 99999999988764 799999999999998557 999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCC-Ccce-E-----EEEEEEecCCCeEEecChhHHHHHHHHHHh
Q psy14445 186 MEQLAKEAARIIYVVHDELKD-KHFE-L-----ELAWVGEKTNGKFEMVPQSFLEECENYAKA 241 (252)
Q Consensus 186 ~~eai~la~~al~~~~~~~~~-~~~~-i-----ev~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (252)
++||++++++||..+.++... ++.. + ||++|++ ++ ++.++.++++++++....
T Consensus 160 ~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~--~g-~~~l~~~ei~~~~~~~~~ 219 (235)
T 1q5q_H 160 EETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQ--AG-AVHVSEETTSELARRIVA 219 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEET--TE-EEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeC--CC-eEEeCHHHHHHHHHHHHH
Confidence 999999999999999865222 2212 2 8999997 35 888999999999976543
No 36
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=2.5e-43 Score=294.41 Aligned_cols=183 Identities=15% Similarity=0.163 Sum_probs=170.2
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.+.++++ +++.+||++|++||+|+ +|..+|++.+.++++.+++.|++++++++|++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999877 56899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeC-CCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDK-TDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAK 191 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~-~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~ 191 (252)
+++++.++.+++. .+||++++||||||+ ++||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++
T Consensus 82 ~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~ 159 (198)
T 1ryp_K 82 SFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD 159 (198)
T ss_dssp HHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHH
Confidence 9999999988742 259999999999996 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCcceEEEEEEEec
Q psy14445 192 EAARIIYVVHDELKDKHFELELAWVGEK 219 (252)
Q Consensus 192 la~~al~~~~~~~~~~~~~iev~~i~~~ 219 (252)
++++||..+.++....+..++|++|+++
T Consensus 160 l~~~al~~~~~~d~~s~~~i~v~vi~~~ 187 (198)
T 1ryp_K 160 LLKLCVQELEKRMPMDFKGVIVKIVDKD 187 (198)
T ss_dssp HHHHHHHHHHHHCSBCCCCEEEEEEETT
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEcCC
Confidence 9999999998664334457999999984
No 37
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=2.4e-43 Score=296.08 Aligned_cols=192 Identities=17% Similarity=0.157 Sum_probs=172.9
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccccCCcccC-CCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCH
Q psy14445 31 VENSSTAIGLRGKDGVVIAVEKLVLSKLYDP-GANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPL 108 (252)
Q Consensus 31 v~~G~t~vgi~~~dgVvlaad~~~~~~~~~~-~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 108 (252)
+.+|+|+|||+++||||||+|+|.+.++++. ++.+||++|++|++|+ +|..+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 3689999999999999999999999999874 5889999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCccCceeeEEEEEEeC-CCCceEEEECCCCceecc-cEEEecCChhhhhHHHHHhcCCCCCH
Q psy14445 109 HLLNERVSMYVHAYTLYSMVRPFGASLLLASHDK-TDGPSLYVVDPSGVSHGY-FGCAIGKAKQNAKTEIEKLKLSTLSM 186 (252)
Q Consensus 109 ~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~-~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~ 186 (252)
+.+++++++.+ |+++ ..||++++||||||+ ++||+||.+||+|++..+ .++|+|+|+++++++||+.|+++||+
T Consensus 85 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 85 YTLMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp HHHHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence 99999999999 6654 349999999999995 479999999999999665 56999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEec
Q psy14445 187 EQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMV 227 (252)
Q Consensus 187 ~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~ 227 (252)
+||++++++||..+.++....+.++||++|+++ +..++.+
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~-g~~~~~~ 200 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKD-KITTRTL 200 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESS-BEEEEEB
T ss_pred HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCC-CEEEEEe
Confidence 999999999999999775444568999999985 3334433
No 38
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=5e-43 Score=293.89 Aligned_cols=191 Identities=19% Similarity=0.168 Sum_probs=172.2
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccccCCcccC-CCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCH
Q psy14445 31 VENSSTAIGLRGKDGVVIAVEKLVLSKLYDP-GANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPL 108 (252)
Q Consensus 31 v~~G~t~vgi~~~dgVvlaad~~~~~~~~~~-~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 108 (252)
+.+|+|+|||+++||||||+|+|.+.++++. ++.+||++|+ |++|+ +|..+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 4689999999999999999999999999874 5899999999 99999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCccCceeeEEEEEEeC-CCCceEEEECCCCceecc-cEEEecCChhhhhHHHHHhcCCCCCH
Q psy14445 109 HLLNERVSMYVHAYTLYSMVRPFGASLLLASHDK-TDGPSLYVVDPSGVSHGY-FGCAIGKAKQNAKTEIEKLKLSTLSM 186 (252)
Q Consensus 109 ~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~-~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~ 186 (252)
+.+++++++.+ |+++. .||++++||||||+ ++||+||.+||+|++..+ .++|+|+|+++++++||+.|+++||+
T Consensus 84 ~~la~~l~~~~--y~~~~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 159 (204)
T 1ryp_J 84 ETFTQLVSSSL--YERRF--GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP 159 (204)
T ss_dssp HHHHHHHHHHH--HTTTT--SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCH
Confidence 99999999999 66653 39999999999996 579999999999999666 56999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEec
Q psy14445 187 EQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMV 227 (252)
Q Consensus 187 ~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~ 227 (252)
+||++++++||..+.++...++..+||++|+++ +...+.+
T Consensus 160 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~-g~~~~~~ 199 (204)
T 1ryp_J 160 EDLFETISQALLNAADRDALSGWGAVVYIIKKD-EVVKRYL 199 (204)
T ss_dssp HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESS-CEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCC-CEEEEEe
Confidence 999999999999999764444567999999984 3334433
No 39
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=2e-44 Score=314.12 Aligned_cols=208 Identities=16% Similarity=0.150 Sum_probs=186.0
Q ss_pred hhhHHHHHhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHH-
Q psy14445 24 VEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRS- 100 (252)
Q Consensus 24 veya~~av~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~- 100 (252)
.+.+++|+++|+|+|||+++||||||+|+|.+.+.++ +++.+||++|++||+|+ +|..+|++.+.+++|.+++.|++
T Consensus 31 ~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~ 110 (266)
T 1g0u_M 31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYD 110 (266)
T ss_dssp ---CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhc
Confidence 4667788999999999999999999999999987654 77899999999999999 99999999999999999999998
Q ss_pred ----hcCCCCCHHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHH
Q psy14445 101 ----KYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEI 176 (252)
Q Consensus 101 ----~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L 176 (252)
+++++++++.+++++++.++ +++.+.|||++++||||||+++||+||.+||+|++.+++++|+|+|+.+++++|
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~ly--~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~L 188 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVMY--QRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL 188 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHHH--HHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHH
T ss_pred cchhhcCCCCCHHHHHHHHHHHHH--HhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHH
Confidence 89999999999999999984 455668999999999999985699999999999999999999999999999999
Q ss_pred HHhcCC-----CCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHH
Q psy14445 177 EKLKLS-----TLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEEC 235 (252)
Q Consensus 177 e~~~~~-----~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~ 235 (252)
|+.|++ +||++||++++++||..+.++....+..+||++|+++ ++ ++.++.++++++
T Consensus 189 e~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~-~g-~~~~~~~ei~~~ 250 (266)
T 1g0u_M 189 RKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKN-TG-LTFKKNLQVENM 250 (266)
T ss_dssp TTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT-TE-EEEEEEEECCCC
T ss_pred HHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECC-CC-eEEcCHHHhhhh
Confidence 999999 9999999999999999998764444567999999983 24 777777766654
No 40
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=4.8e-43 Score=297.86 Aligned_cols=185 Identities=17% Similarity=0.203 Sum_probs=171.6
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcC-CCCC
Q psy14445 31 VENSSTAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYG-GNIP 107 (252)
Q Consensus 31 v~~G~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~-~~i~ 107 (252)
+++|+|+|||+++||||||+|+|.+.++++ +++.+|||+|++||+|+ +|..+|++.+.++++.+++.|+++++ ++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T 1ryp_M 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS 85 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 578999999999999999999999999975 67899999999999999 99999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHh--------
Q psy14445 108 LHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL-------- 179 (252)
Q Consensus 108 ~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~-------- 179 (252)
++.+|+++++.++ ++ +.|||++++||||||++++|+||.+||.|++.+++++|+|+|+.+++++||+.
T Consensus 86 v~~la~~l~~~ly--~~--r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~ 161 (222)
T 1ryp_M 86 INSAARNIQHLLY--GK--RFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYE 161 (222)
T ss_dssp HHHHHHHHHHHHH--TT--TTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBC
T ss_pred HHHHHHHHHHHHH--hc--CCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccc
Confidence 9999999999984 33 36899999999999975679999999999999999999999999999999998
Q ss_pred ---------cCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEec
Q psy14445 180 ---------KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEK 219 (252)
Q Consensus 180 ---------~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~ 219 (252)
|+++||++||++++++||..+.++....+..+||++|+++
T Consensus 162 ~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~ 210 (222)
T 1ryp_M 162 PGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKD 210 (222)
T ss_dssp TTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT
T ss_pred cccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCC
Confidence 8899999999999999999999764444567999999984
No 41
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=2.9e-43 Score=301.34 Aligned_cols=188 Identities=16% Similarity=0.164 Sum_probs=172.7
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.+.++++ .++.+|||+|++||+|+ +|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 68999999999999999999999876 57889999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
+++++.++.| .+||++++||||||+ +||+||++||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQEL 154 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHH
Confidence 9999999765 369999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhH
Q psy14445 193 AARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSF 231 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~ 231 (252)
+++||..+.++....+.++||++|+++ | +++++..+
T Consensus 155 a~~al~~~~~~D~~sg~~iev~vi~~d--g-~~~l~~~~ 190 (234)
T 3unf_H 155 LVEAITAGILSDLGSGGNVDACVITAG--G-AKLQRALS 190 (234)
T ss_dssp HHHHHHHHHHHBTTCCSCEEEEEEESS--C-EEEEEEEE
T ss_pred HHHHHHHHHhhcCCCCCcEEEEEEECC--C-EEEeCcee
Confidence 999999998653434567999999985 5 55555444
No 42
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=3.2e-43 Score=293.94 Aligned_cols=194 Identities=12% Similarity=0.034 Sum_probs=175.1
Q ss_pred CcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.+.+.+ .+++.+|||+|++|++|+ +|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999999855 478899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceeccc-EEEecCChhhhhHHHHHhcCCCCCHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYF-GCAIGKAKQNAKTEIEKLKLSTLSMEQLAK 191 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~eai~ 191 (252)
+++++.++.+ .|||++++||||||+++||+||+ |+|++..+. ++++|+|+++++++||+.|+++||++||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~ 153 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRR 153 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHH
Confidence 9999999865 36999999999999867899999 999987665 555799999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHH
Q psy14445 192 EAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECE 236 (252)
Q Consensus 192 la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~ 236 (252)
++++||..+.++....+..+||++|+++ +..++.+++++++.++
T Consensus 154 la~~al~~~~~~d~~sg~~i~v~vi~~~-g~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 154 FTTNAITLAMNRDGSSGGVIYLVTITAA-GVDHRVILGDELPKFY 197 (199)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEECSS-CEEEEEECGGGSCCCC
T ss_pred HHHHHHHHHHHhccccCCCeEEEEEcCC-CEEEEEcCcccCcccc
Confidence 9999999998764434457999999985 5568999999887643
No 43
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=5.6e-42 Score=286.90 Aligned_cols=183 Identities=17% Similarity=0.210 Sum_probs=166.6
Q ss_pred CcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.+.+.+ .+++.+||++|++||+|+ +|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999998754 478899999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
+++++.+.... + ..|||++++||||||+++||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 82 ~~~~~~l~~~~-~-~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 159 (201)
T 1iru_K 82 NFTRRNLADCL-R-SRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVEL 159 (201)
T ss_dssp HHHHHHHHHHH-T-SSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHH-h-cCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHH
Confidence 99987653221 2 237999999999999767999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEEEec
Q psy14445 193 AARIIYVVHDELKDKHFELELAWVGEK 219 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i~~~ 219 (252)
+++||..+.++....+..++|++|+++
T Consensus 160 ~~~al~~a~~rd~~sg~~i~v~vi~~~ 186 (201)
T 1iru_K 160 LRKCLEELQKRFILNLPTFSVRIIDKN 186 (201)
T ss_dssp HHHHHHHHHHTBCBCCCCEEEEEEETT
T ss_pred HHHHHHHHHhhccccCCceEEEEEcCC
Confidence 999999998764444567999999984
No 44
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.1e-41 Score=289.39 Aligned_cols=179 Identities=15% Similarity=0.125 Sum_probs=167.7
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.++++++ .++.+||++|++||+|+ +|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999876 56889999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
+++++.++.+ .|||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKL 154 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHH
Confidence 9999998765 379999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEEEec
Q psy14445 193 AARIIYVVHDELKDKHFELELAWVGEK 219 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i~~~ 219 (252)
+++||..+.++....+..+||++|+++
T Consensus 155 a~~al~~~~~~d~~sg~~i~v~vi~~~ 181 (222)
T 1ryp_I 155 ASDAIQAGIWNDLGSGSNVDVCVMEIG 181 (222)
T ss_dssp HHHHHHHHHHHCTTCCSCEEEEEEETT
T ss_pred HHHHHHHHHhccccCCCcEEEEEEECC
Confidence 999999998663333457999999985
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=5.5e-41 Score=287.33 Aligned_cols=179 Identities=16% Similarity=0.170 Sum_probs=167.3
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEecCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLN 112 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la 112 (252)
+|+|||+++||||||+|+|.+.++++ .++.+|||+|++||+|+ +|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999986 56889999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHH
Q psy14445 113 ERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKE 192 (252)
Q Consensus 113 ~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~l 192 (252)
+++++.++.++ +||++++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||+++
T Consensus 81 ~~l~~~l~~~~-----~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~l 154 (234)
T 1iru_I 81 RMLKQMLFRYR-----GYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNL 154 (234)
T ss_dssp HHHHHHHHHTT-----TCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTH
T ss_pred HHHHHHHHhcC-----CCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHH
Confidence 99999997653 59999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCcceEEEEEEEec
Q psy14445 193 AARIIYVVHDELKDKHFELELAWVGEK 219 (252)
Q Consensus 193 a~~al~~~~~~~~~~~~~iev~~i~~~ 219 (252)
+++||..+.++....+..++|++|+++
T Consensus 155 a~~al~~a~~~d~~sg~~i~v~vi~k~ 181 (234)
T 1iru_I 155 VSEAIAAGIFNDLGSGSNIDLCVISKN 181 (234)
T ss_dssp HHHHHHHHHHHCTTCCSCEEEEEEETT
T ss_pred HHHHHHHHHHhcccCCCCEEEEEEECC
Confidence 999999998653333457999999984
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=6.2e-35 Score=240.32 Aligned_cols=168 Identities=15% Similarity=0.137 Sum_probs=144.8
Q ss_pred hcCCcEEEEEeCCEEEEEEeccccCCcc--cCCCceeEEEe-cCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14445 32 ENSSTAIGLRGKDGVVIAVEKLVLSKLY--DPGANKRIFHV-DTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIP 107 (252)
Q Consensus 32 ~~G~t~vgi~~~dgVvlaad~~~~~~~~--~~~~~~Ki~~i-~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 107 (252)
.+|+|+|||+++||||||+|+|.+.+.+ .+++.+||++| ++|++|+ +|..+|++.+.++++.+++.|+ + +
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---~ 76 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---N 76 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T---C
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C---C
Confidence 5799999999999999999999998654 47889999999 9999999 9999999999999999999987 3 2
Q ss_pred HHHHHHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceec--ccEEEecCChhhhhHHHHHhcCC---
Q psy14445 108 LHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHG--YFGCAIGKAKQNAKTEIEKLKLS--- 182 (252)
Q Consensus 108 ~~~la~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~--- 182 (252)
+.+.++.+.+.++++...|||++++||| | ||+||.+||+|++.+ ++++|+|+|+++++++||+.|++
T Consensus 77 ---~~~~~~~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~ 148 (180)
T 2z3b_A 77 ---LKRAAVELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGE 148 (180)
T ss_dssp ---HHHHHHHHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGG
T ss_pred ---hHHHHHHHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCC
Confidence 3333344455556667789999999999 3 699999999999997 49999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEE
Q psy14445 183 TLSMEQLAKEAARIIYVVHDELKDKHFELELAWV 216 (252)
Q Consensus 183 ~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i 216 (252)
+||.+| ++++||+.+.++...++..++|.+|
T Consensus 149 ~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 149 SMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp GCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 999999 4779999998765555567888876
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=2.6e-34 Score=234.59 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=139.1
Q ss_pred CcEEEEEeCCEEEEEEeccccCCccc-CCCceeEEEe-cCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLYD-PGANKRIFHV-DTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLL 111 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~~-~~~~~Ki~~i-~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~l 111 (252)
+|+|||+++||||||+|+|.+.+.++ +++.+|||+| ++|++|+ +|..+|++.+.++++.+++.|+++ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 68999999999999999999987554 7789999999 9999999 999999999999999999998744 24444
Q ss_pred HHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceeccc--EEEecCChhhhhHHHHHhcC-CCCCHHH
Q psy14445 112 NERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYF--GCAIGKAKQNAKTEIEKLKL-STLSMEQ 188 (252)
Q Consensus 112 a~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~-~~~s~~e 188 (252)
++. .+.++++...|||++++|++ | ||+||.+||+|++.+++ ++|+|+|+++++++||+.|+ ++||.
T Consensus 76 ~~l----~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~-- 144 (171)
T 1m4y_A 76 VEL----AKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA-- 144 (171)
T ss_dssp HHH----HHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH--
T ss_pred HHH----HHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH--
Confidence 444 33344455678999999888 4 79999999999999988 99999999999999999999 99997
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEEEE
Q psy14445 189 LAKEAARIIYVVHDELKDKHFELELAW 215 (252)
Q Consensus 189 ai~la~~al~~~~~~~~~~~~~iev~~ 215 (252)
++++++||+.+.++...++..++|.+
T Consensus 145 -~~l~~~al~~a~~rd~~sg~~i~v~~ 170 (171)
T 1m4y_A 145 -REIVEKAMTIAGEICIYTNQNIVIEE 170 (171)
T ss_dssp -HHHHHHHHHHHHHHCTTCCSCCEEEE
T ss_pred -HHHHHHHHHHHHHhCcccCCeEEEEE
Confidence 67899999999876444445677764
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=3.7e-34 Score=234.40 Aligned_cols=166 Identities=14% Similarity=0.083 Sum_probs=141.3
Q ss_pred CcEEEEEeCCEEEEEEeccccCCcc-cCCCceeEEEe-cCeeEEe-ecchhhHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q psy14445 35 STAIGLRGKDGVVIAVEKLVLSKLY-DPGANKRIFHV-DTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLL 111 (252)
Q Consensus 35 ~t~vgi~~~dgVvlaad~~~~~~~~-~~~~~~Ki~~i-~~~i~~~-sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~l 111 (252)
+|+|||+++||||||+|+|.+.+.+ .+++.+||++| ++|++|+ +|..+|++.+.++++.+++.|++ ++...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999998855 47889999999 9999999 99999999999999999999875 33333
Q ss_pred HHHHHHHHHHhcccCCccCceeeEEEEEEeCCCCceEEEECCCCceeccc---EEEecCChhhhhHHHHHhcC-CCCCHH
Q psy14445 112 NERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYF---GCAIGKAKQNAKTEIEKLKL-STLSME 187 (252)
Q Consensus 112 a~~l~~~~~~~t~~~~~rP~~~~~iiaG~D~~~gp~Ly~id~~G~~~~~~---~~a~G~g~~~~~~~Le~~~~-~~~s~~ 187 (252)
+ +.+.+.+++++..||++ ++++|+| ||+||.+||+|++.+++ ++|+|+|+++++++||+.|+ ++||.+
T Consensus 75 ~---~~l~~~~~~~~~~r~~~--~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~ 146 (174)
T 1g3k_A 75 A---VELAKDWRTDRALRKLE--AMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH 146 (174)
T ss_dssp H---HHHHHHHHHSTTGGGCC--CEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH
T ss_pred H---HHHHHHHHhccCcCcce--EEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH
Confidence 3 44444455556677865 6777887 79999999999999988 99999999999999999999 999955
Q ss_pred HHHHHHHHHHHHHhhccCCCcceEEEEEEE
Q psy14445 188 QLAKEAARIIYVVHDELKDKHFELELAWVG 217 (252)
Q Consensus 188 eai~la~~al~~~~~~~~~~~~~iev~~i~ 217 (252)
+++++||+.+.++...++..++|.+|+
T Consensus 147 ---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 147 ---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp ---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred ---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 799999999987644445678999884
No 49
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=41.35 E-value=30 Score=24.11 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=39.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhccCCCcceEEEEEEEecCCCeEEecChhHHHHHHHHHH
Q psy14445 180 KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAK 240 (252)
Q Consensus 180 ~~~~~s~~eai~la~~al~~~~~~~~~~~~~iev~~i~~~~~~~~~~~~~~~~~~~~~~~~ 240 (252)
..++++.++..+.++..++.. . +..+.+.|++++ +....+.+.++++++++-..
T Consensus 22 v~~~i~~~~L~~kv~~~~~~~----~--~~~f~lky~DEe-GD~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 22 FEPSISFEGLCNEVRDMCSFD----N--EQLFTMKWIDEE-GDPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp ECTTCCHHHHHHHHHHHTTCC----S--SCCEEEEECCSS-SCCEECCSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCC----C--CCeEEEEEECCC-CCcccccCHHHHHHHHHHHH
Confidence 357889998888777755421 1 124789999986 66688899999999997554
No 50
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=40.25 E-value=22 Score=29.01 Aligned_cols=31 Identities=6% Similarity=0.104 Sum_probs=26.9
Q ss_pred cccCCCCccchhhhHHHHHhcCCcEEEEEeC
Q psy14445 13 SQFSPDGRVFQVEYAQKAVENSSTAIGLRGK 43 (252)
Q Consensus 13 t~fspeGrl~Qveya~~av~~G~t~vgi~~~ 43 (252)
|.||++|..---|++..|...|-+.|||+=-
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH 38 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKGLKGVVFTDH 38 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTTCSEEEEEEE
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEEcCC
Confidence 6899999988789999999999998888653
No 51
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=37.35 E-value=6.9 Score=28.89 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=15.2
Q ss_pred CCCCCCCccccCCCCccch
Q psy14445 5 GAGYDLSASQFSPDGRVFQ 23 (252)
Q Consensus 5 ~~~yd~~~t~fspeGrl~Q 23 (252)
..+-|+.+|.|+|+||+.-
T Consensus 52 e~gm~h~vTfF~~~Grl~~ 70 (138)
T 3rj2_X 52 EMFMRHRVTFFNATGRYIT 70 (138)
T ss_dssp CTTCEEEEEEECTTSCEEE
T ss_pred cCcceeEEEEEcCCCcEEE
Confidence 4567888999999998753
No 52
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=35.47 E-value=22 Score=27.88 Aligned_cols=31 Identities=10% Similarity=-0.068 Sum_probs=27.9
Q ss_pred ccccCCCCccc-hhhhHHHHHhcCCcEEEEEe
Q psy14445 12 ASQFSPDGRVF-QVEYAQKAVENSSTAIGLRG 42 (252)
Q Consensus 12 ~t~fspeGrl~-Qveya~~av~~G~t~vgi~~ 42 (252)
+-+||+.||=- -||.|.++-++|-++|+|+.
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 45899999955 89999999999999999998
No 53
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=25.51 E-value=61 Score=22.19 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=35.2
Q ss_pred EeCCCCceEEEECCCCce-ecccEEEecCChhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy14445 140 HDKTDGPSLYVVDPSGVS-HGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHD 202 (252)
Q Consensus 140 ~D~~~gp~Ly~id~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~eai~la~~al~~~~~ 202 (252)
+|. +|..| .|.|+|+- +.+.|...|.......+ -.|++|++||-+.+.++...+.+
T Consensus 21 ~Dg-~GL~L-~V~psG~K~w~~ryr~~Gk~~~~~LG-----~yp~~sL~~AR~~a~~~r~~l~~ 77 (88)
T 3jtz_A 21 SDS-HGLYL-LVKPGGSRHWYLKYRISGKESRIALG-----AYPAISLSDARQQREGIRKMLAL 77 (88)
T ss_dssp ECS-TTEEE-EECTTSCEEEEEEEEETTEEEEEEEE-----ETTTSCHHHHHHHHHHHHHHHTC
T ss_pred ecC-CceEE-EEecCCCEEEEEEEEeCCeEEEEEeE-----CCCCCCHHHHHHHHHHHHHHHHc
Confidence 354 44443 46788863 34556554543322221 25899999999999998887763
No 54
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=22.74 E-value=60 Score=19.06 Aligned_cols=17 Identities=18% Similarity=-0.095 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy14445 182 STLSMEQLAKEAARIIY 198 (252)
Q Consensus 182 ~~~s~~eai~la~~al~ 198 (252)
|+||.+|-+.+|++.-.
T Consensus 2 p~mtEEEq~ALA~rmSe 18 (45)
T 3a1q_C 2 PLGSEEEQFALALKMSE 18 (45)
T ss_dssp CCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHhH
Confidence 78999999999877543
No 55
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=22.28 E-value=1.2e+02 Score=21.98 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=23.2
Q ss_pred eEEEEEEEecCCCeEEecChhHHHHHHHHH
Q psy14445 210 ELELAWVGEKTNGKFEMVPQSFLEECENYA 239 (252)
Q Consensus 210 ~iev~~i~~~~~~~~~~~~~~~~~~~~~~~ 239 (252)
.+-|.+++++|+-..|-+|.+++-.+.+.-
T Consensus 68 ~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l 97 (117)
T 2hc5_A 68 EYYVKVIEDSTNEVIREIPPKRWLDFYAAM 97 (117)
T ss_dssp EEEEEEEETTTTEEEEEECHHHHHHHHHHH
T ss_pred cEEEEEEECCCCcEEEeCChHHHHHHHHHH
Confidence 467889999888878999999877765443
No 56
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=20.18 E-value=73 Score=25.36 Aligned_cols=31 Identities=10% Similarity=0.108 Sum_probs=25.2
Q ss_pred cccCCCCccchhhhHHHHHhcCCcEEEEEeC
Q psy14445 13 SQFSPDGRVFQVEYAQKAVENSSTAIGLRGK 43 (252)
Q Consensus 13 t~fspeGrl~Qveya~~av~~G~t~vgi~~~ 43 (252)
|.||++|..---|++..|...|-..|||+=-
T Consensus 10 t~~Sd~g~~~~~e~v~~A~~~Gl~~iaiTDH 40 (245)
T 1m65_A 10 TVASTHAYSTLSDYIAQAKQKGIKLFAITDH 40 (245)
T ss_dssp CTTSTTCCCCHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCCCCCCCcHHHHHHHHHHCCCCEEEECCC
Confidence 5788888755559999999999999998754
Done!