RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14445
(252 letters)
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 340 bits (873), Expect = e-119
Identities = 163/251 (64%), Positives = 201/251 (80%), Gaps = 1/251 (0%)
Query: 2 SSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDP 61
SSIG GYDLSAS FSPDGRVFQVEYA KAVENSSTAIG+R KDGVV VEKLVLSKLY+
Sbjct: 1 SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE 60
Query: 62 GANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVH 120
G+NKR+F+VD H+G+ +GL++ R LA+ A+ EAS +RS +G NIPL L +RV+MYVH
Sbjct: 61 GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVH 120
Query: 121 AYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLK 180
AYTLYS VRPFG S +L S+ DG LY++DPSGVS+GY+GCAIGKA+Q AKTEIEKL+
Sbjct: 121 AYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ 180
Query: 181 LSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAK 240
+ ++ + KE A+IIY+VHDE+KDK FELEL+WVGE TNG+ E+VP+ EE E YAK
Sbjct: 181 MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240
Query: 241 ASLQDSDSDND 251
SL++ D +D
Sbjct: 241 ESLKEEDESDD 251
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 332 bits (853), Expect = e-116
Identities = 120/256 (46%), Positives = 163/256 (63%), Gaps = 6/256 (2%)
Query: 1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD 60
M+SIG GYDLS S FSPDGR FQVEYA KAVEN +T+IG++ DGVV AVEKL+ SKL
Sbjct: 1 MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLV 60
Query: 61 PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYV 119
P N +I VD HIG SGLI GR L + EA+ ++ Y IP+ +R+ YV
Sbjct: 61 PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYV 120
Query: 120 HAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL 179
A+TLY+ VRPFG S + DK +G LY+++PSG GY G A GK +Q+AK E+EKL
Sbjct: 121 QAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKL 179
Query: 180 ---KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVG-EKTNGKFEMVPQSFLEEC 235
LS + K+AA+IIY+ H++ K+K FELE++W +TNG + V L+E
Sbjct: 180 VDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEA 239
Query: 236 ENYAKASLQDSDSDND 251
++A+ + D +++
Sbjct: 240 IDFAQKEINGDDDEDE 255
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 322 bits (827), Expect = e-112
Identities = 116/244 (47%), Positives = 155/244 (63%), Gaps = 6/244 (2%)
Query: 5 GAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGAN 64
G GYDLS S FSPDGR FQVEYA KAVEN +T+IG++ DGVV AVEKL+ SKL P N
Sbjct: 1 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKN 60
Query: 65 KRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYT 123
+I VD HIG SGLI GR L + EA+ ++ Y IP+ +R+ YV A+T
Sbjct: 61 VKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHT 120
Query: 124 LYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL---K 180
LY+ VRPFG S + DK +G LY+++PSG GY G A GK +Q+AK E+EKL
Sbjct: 121 LYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHH 179
Query: 181 LSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVG-EKTNGKFEMVPQSFLEECENYA 239
LS + K+AA+IIY+ H++ K+K FELE++W +TNG + V L+E ++A
Sbjct: 180 PEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFA 239
Query: 240 KASL 243
+ +
Sbjct: 240 QKEI 243
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 311 bits (798), Expect = e-108
Identities = 79/247 (31%), Positives = 127/247 (51%), Gaps = 13/247 (5%)
Query: 1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD 60
M + YD + FSP+GR+FQVEY +A++ STAIG++ +GV +AVEK + S L +
Sbjct: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME 60
Query: 61 PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYV 119
P + ++I +D HIG SGLI+ + L + A+ E + Y + + + + VS
Sbjct: 61 PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA 120
Query: 120 HAYTLYS-----MVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKT 174
+ M RPFG +LL D+ GP L+ +DPSG AIG A + A++
Sbjct: 121 LQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQS 179
Query: 175 EIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEE 234
+++L ++++++ K + I+ V +E K +ELA V F M + EE
Sbjct: 180 SLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQP--GQNFHMFTK---EE 233
Query: 235 CENYAKA 241
E K
Sbjct: 234 LEEVIKD 240
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 308 bits (791), Expect = e-107
Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 6/230 (2%)
Query: 1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD 60
M+ Y S + FSP G++ Q++YA AV+ T++G++ +GVVIA EK S L
Sbjct: 1 MTD---RYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAM 57
Query: 61 PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEA-SEYRSKYGGNIPLHLLNERVSMY 118
++ + IG SG+ R L + ++ A + Y+ YG P LL V+
Sbjct: 58 SETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKI 117
Query: 119 VHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEK 178
+ T VRPFG SLL+A HD+ +G SLY VDPSG + AIGK AKT +EK
Sbjct: 118 MQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEK 177
Query: 179 LKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVP 228
L +E A + + + +ELA +G++
Sbjct: 178 RWNDELELEDAIHIALLTLKESVEG-EFNGDTIELAIIGDENPDLLGYTG 226
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 306 bits (786), Expect = e-106
Identities = 74/237 (31%), Positives = 111/237 (46%), Gaps = 9/237 (3%)
Query: 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANK 65
GY S + FSP G++ Q+EYA AV + ++G++ +GVV+A EK S LYD +
Sbjct: 3 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVH 62
Query: 66 RIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTL 124
++ + HIGL SG+ R L A+ A +Y Y IP L +RV+ + YT
Sbjct: 63 KVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQ 122
Query: 125 YSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTL 184
VRPFG SLL+ ++ P L+ DPSG + A+GK N KT +EK L
Sbjct: 123 SGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDL 181
Query: 185 SMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKA 241
+E A + + + +E+ E F + E ++Y A
Sbjct: 182 ELEDAIHTAILTLKESFEG-QMTEDNIEVGICNE---AGFRRLTP---TEVKDYLAA 231
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 306 bits (786), Expect = e-106
Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 10/246 (4%)
Query: 1 MS-SIGAGYDLSASQFSPDGRVFQVEYAQKAVENSS-TAIGLRGKDGVVIAVEKLVLSKL 58
MS AG+D + FSP+GR++QVEYA KA+ T++ +RGKD VI +K V KL
Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKL 60
Query: 59 YDPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSM 117
D +F + +IG +G+ + R + A+ EA+ ++ KYG IP+ +L +R++
Sbjct: 61 LDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 118 YVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIE 177
YT + +RP G ++L D+ GP +Y DP+G G+ A G + + + +E
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 178 KL--KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEEC 235
K K + EQ + A + V K E+E+ V N KF ++ + E
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLSTVLSI-DFKPSEIEVGVVT-VENPKFRILTE---AEI 235
Query: 236 ENYAKA 241
+ + A
Sbjct: 236 DAHLVA 241
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 302 bits (776), Expect = e-104
Identities = 78/252 (30%), Positives = 138/252 (54%), Gaps = 5/252 (1%)
Query: 1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD 60
+ YD + + FSP+GR++QVEYA++AV +TAIG+ KDGVV+AV++ + SKL
Sbjct: 5 QMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVK 64
Query: 61 PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYV 119
+ ++IF +D H+ SGL++ R L + A+ EA YR YG I + +L +++
Sbjct: 65 IRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIK 124
Query: 120 HAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL 179
AYT + VRPFG SLL+A DK + L+ DPSG Y AIG + +EK
Sbjct: 125 QAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKE 183
Query: 180 KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYA 239
+++++ + A + ++++K ++ ++ + V + +F+ +P +++
Sbjct: 184 YRDDITLDEGLELAITALTKANEDIKPENVDVCIITV---KDAQFKKIPVEEIKKLIEKV 240
Query: 240 KASLQDSDSDND 251
K L + + +
Sbjct: 241 KKKLNEENKKEE 252
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 299 bits (769), Expect = e-103
Identities = 80/242 (33%), Positives = 122/242 (50%), Gaps = 8/242 (3%)
Query: 1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD 60
M GYD + + FSPDGR+FQVEYA++AV+ +TAIG++ K+GV++ +K V SKL +
Sbjct: 1 MHLPQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLE 60
Query: 61 PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYV 119
++I+ +D HI SGL++ R L + A+ EA R Y I + L +++ +
Sbjct: 61 KDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFK 120
Query: 120 HAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL 179
YT Y VRPFG SLL+A + + P LY DPSG Y AIG + EK
Sbjct: 121 QQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKE 178
Query: 180 KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYA 239
LS + + + + + +E+ +V E+ P EE + Y
Sbjct: 179 YRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSP----EELKPYV 233
Query: 240 KA 241
+
Sbjct: 234 ER 235
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 296 bits (760), Expect = e-102
Identities = 71/239 (29%), Positives = 125/239 (52%), Gaps = 8/239 (3%)
Query: 1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD 60
M Y + + FSPDGR+FQVEYA++AV+ STA+G++ +GV++ +K V S+L +
Sbjct: 1 MQQGQMAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIE 60
Query: 61 PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYV 119
+ ++I +D ++ SGL++ R L + A+ A + + YG + + L +RV+ +
Sbjct: 61 QNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQM 120
Query: 120 HAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL 179
YT Y VRP+G SL+ A D+ GP L+ DP+G + Y AIG K + +E+
Sbjct: 121 QQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLERE 179
Query: 180 KLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENY 238
L ++ + + +E ++ E+A + K+ + Q EE + +
Sbjct: 180 YKENLPEKEAVTLGIKALKSSLEE-GEELKAPEIASIT--VGNKYRIYDQ---EEVKKF 232
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 295 bits (757), Expect = e-101
Identities = 70/260 (26%), Positives = 121/260 (46%), Gaps = 12/260 (4%)
Query: 1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD 60
MS YD + FSP+GR++QVEYA +A+ ++ T +G+ DGV++A E+ + KL D
Sbjct: 1 MSR---RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLD 57
Query: 61 P-GANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMY 118
+++I+ ++ + +G+ S L + A Y +Y IP L +
Sbjct: 58 EVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDI 117
Query: 119 VHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEK 178
AYT + RPFG SLL DK G LY DPSG G+ IG A + +++
Sbjct: 118 KQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQ 177
Query: 179 -LKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNG-KFEMVPQSFLEEC- 235
K ++++ A +++ D K ++E+A + + ++ Q +E+
Sbjct: 178 DYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237
Query: 236 ----ENYAKASLQDSDSDND 251
E AKA + + +
Sbjct: 238 KKHEEEEAKAEREKKEKEQK 257
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 294 bits (754), Expect = e-101
Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 8/240 (3%)
Query: 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGA-N 64
YD + FSP+GR++QVEYA +++ ++ TAIG+ DG+V+A E+ V S L +
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTST 62
Query: 65 KRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYT 123
++++ ++ I + +GL + L TA+ A Y Y +IP+ +L R+S YT
Sbjct: 63 EKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYT 122
Query: 124 LYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLST 183
+ +RPFG S + A +D G LY +PSG G+ ++G A+T ++
Sbjct: 123 QHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDD 182
Query: 184 LSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNG---KFEMVPQSFLEECENYAK 240
+ ++ + A + + D + LE A + + N ++ +E ++
Sbjct: 183 MKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKP---QEIKDILV 239
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 291 bits (746), Expect = e-100
Identities = 70/248 (28%), Positives = 122/248 (49%), Gaps = 11/248 (4%)
Query: 7 GYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKR 66
YD + + FSPDG +FQVEYAQ+AV+ STA+G+RG+D VV+ VEK ++KL D ++
Sbjct: 2 SYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRK 61
Query: 67 IFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLY 125
I +D ++ + +GL + R + A+ E +R + + + ++ YT
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
Query: 126 SMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL--KLST 183
+ RPFG S L+ D P LY DPSG H + AIG+ ++ + +EK +
Sbjct: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 181
Query: 184 LSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKASL 243
+ + K I + + ++ +ELA + + +++ EE E Y
Sbjct: 182 ETDDLTIKLV---IKALLEVVQSGGKNIELAVMRR--DQSLKILNP---EEIEKYVAEIE 233
Query: 244 QDSDSDND 251
++ + +
Sbjct: 234 KEKEENEK 241
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 286 bits (735), Expect = 1e-98
Identities = 80/245 (32%), Positives = 119/245 (48%), Gaps = 16/245 (6%)
Query: 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSS-TAIGLRGKDGVVIAVEKLVLSKLYDPGAN 64
AGYD + FSP+GR++QVEYA KA ++ ++ +RGKD V+ +K V KL DP
Sbjct: 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTV 60
Query: 65 KRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYT 123
IF + IG+ +G I R A AK EA+E+R KYG ++P +L +R++ YT
Sbjct: 61 SYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYT 120
Query: 124 LYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEK----- 178
+ +RP G L S D+ GPS+Y DP+G GY A G +Q T +E
Sbjct: 121 QRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKS 180
Query: 179 --LKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECE 236
++ S E++ + A + + +LE+ T KF + E E
Sbjct: 181 KIDHINEESWEKVVEFAITHMIDALGT-EFSKNDLEVGVA---TKDKFFTLSA---ENIE 233
Query: 237 NYAKA 241
A
Sbjct: 234 ERLVA 238
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 285 bits (732), Expect = 7e-98
Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 15/259 (5%)
Query: 1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD 60
M YD + +SP GR+ Q+EYA +AV+ S +GL+ K V+ K S+L
Sbjct: 1 MFR--NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAA 58
Query: 61 PGANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYV 119
K+I HVD HIG+ +GL + R L + E + R + +P+ L +
Sbjct: 59 H--QKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKT 116
Query: 120 HAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL 179
T RP+G LL+A +D GP ++ PS +IG Q+A+T +E+
Sbjct: 117 QIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERH 175
Query: 180 --KLSTLSMEQLAKEAARIIYVVHDELKD-KHFELELAWVGEKTNGKFEMVP----QSFL 232
+ ++ +L K R + +D + + VG+ + +F + FL
Sbjct: 176 MSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGK--DLEFTIYDDDDVSPFL 233
Query: 233 EECENYAKASLQDSDSDND 251
E E + Q + ++
Sbjct: 234 EGLEERPQRKAQPAQPADE 252
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 283 bits (726), Expect = 3e-97
Identities = 76/240 (31%), Positives = 124/240 (51%), Gaps = 13/240 (5%)
Query: 9 DLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIF 68
D S FSP+GR+FQVEY+ +A++ STAIG+ K+GVV+ VEK S L + + ++I
Sbjct: 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIV 60
Query: 69 HVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYS- 126
+D HIG SGL + R + E A+T A + Y +I + L + V + +
Sbjct: 61 EIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 120
Query: 127 -----MVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKL 181
M RPFG +LL+A HD DG L+ +PSG + Y AIG + A+ E+
Sbjct: 121 GEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH 180
Query: 182 STLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKA 241
S+L++++ +I+ V +E D+ +L+ + ++ F++ E+ K
Sbjct: 181 SSLTLKEAELLVLKILKQVMEEKLDE-NNAQLSCITKQD--GFKIYDN---EKTAELIKE 234
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 282 bits (724), Expect = 6e-97
Identities = 63/237 (26%), Positives = 95/237 (40%), Gaps = 13/237 (5%)
Query: 7 GYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKR 66
YD FSP GR+FQVEYA +A++ S +GLR V+ K +L K+
Sbjct: 4 NYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSY--QKK 61
Query: 67 IFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLY 125
I D H+GL +GL R L+ + + + + + + + T
Sbjct: 62 IIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQS 121
Query: 126 SMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEK----LKL 181
RP+G LL+ +DK G L PSG +G AIG Q AKT +E+
Sbjct: 122 YGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIK 180
Query: 182 STLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENY 238
+ ++L K I + L +A VG+ + F + E Y
Sbjct: 181 IDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGK--DTPFTIYDG---EAVAKY 232
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 271 bits (695), Expect = 1e-92
Identities = 74/241 (30%), Positives = 112/241 (46%), Gaps = 14/241 (5%)
Query: 7 GYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGA-NK 65
GYD + S FSPDG +FQVEYA +AV+ + A+G++GK+ VV+ E+ KL D
Sbjct: 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPS 60
Query: 66 RIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTL 124
++ +D+H+ L SGL + R L E A+ EA +R + + L V+ YT
Sbjct: 61 KVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQ 120
Query: 125 YSMVRPFGASLLLASHDKTD-GPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEK---LK 180
VRPFG S L+A D D P LY +PSG+ + IG+ + + +EK K
Sbjct: 121 SGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRK 180
Query: 181 LSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAK 240
++E+ K R + V +E+ V + + EE Y
Sbjct: 181 EPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKP--DSDIVALSS---EEINQYVT 232
Query: 241 A 241
Sbjct: 233 Q 233
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 104 bits (260), Expect = 5e-27
Identities = 38/238 (15%), Positives = 74/238 (31%), Gaps = 23/238 (9%)
Query: 8 YDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRI 67
Y SA Q D + E A+K + + + L +DGV+ E A ++
Sbjct: 5 YYASAEQIMRD----RSELARKGIARGRSVVVLTFRDGVLFVAENP-------STALHKV 53
Query: 68 FHVDTHIGL-GSGLISAGRQLAETAKTEASEYRSKYGG-NIPLHLLNERVSMYVHAYTLY 125
+ +G G + L A Y ++ L + +
Sbjct: 54 SELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGT-IFT 112
Query: 126 SMVRPFGASLLLA---SHDKTDGPSLYVVDPSG-VSHGYFGCAIGKAKQNAKTEIEKLKL 181
+P+ + +A P LY + G + +G + T + +
Sbjct: 113 EQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR 172
Query: 182 STLSMEQLAKEAARIIYVVHDELKDKHF----ELELAWVG-EKTNGKFEMVPQSFLEE 234
+ L +E A + +K LE+A + + F + + LE+
Sbjct: 173 ADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQ 230
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 100 bits (249), Expect = 1e-25
Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 15/195 (7%)
Query: 16 SPDGRVFQ-VEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHI 74
SP+ + + E A+K + + + + L GV+ E S ++I + +
Sbjct: 8 SPEQAMRERSELARKGIARAKSVVALAYAGGVLFVAENPSRS-------LQKISELYDRV 60
Query: 75 GL-GSGLISAGRQLAETAKTEASEYRSKYGG-NIPLHLLNERVSMYVHAYTLYSMVRPFG 132
G +G + L A Y ++ L + + +P+
Sbjct: 61 GFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGT-IFTEQAKPYE 119
Query: 133 ASLLLA---SHDKTDGPSLYVVDPSG-VSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQ 188
L +A + +T P LY + G ++ +G + +++ S+
Sbjct: 120 VELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTD 179
Query: 189 LAKEAARIIYVVHDE 203
+ A + +
Sbjct: 180 ALRIAVAALRAGSAD 194
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 81.2 bits (201), Expect = 1e-18
Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 8/134 (5%)
Query: 35 STAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGL-GSGLISAGRQLAETAK 92
+T GL +DGV++ + + + ++I + I G+G+ + A
Sbjct: 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAA 60
Query: 93 TEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVD 152
++ + G + + + + Y GASL++ D GP LY V
Sbjct: 61 SKMELHALSTGREPRVATVTRILRQTLFRYQ-----GHVGASLVVGGVDLN-GPQLYEVH 114
Query: 153 PSGVSHGYFGCAIG 166
P G A+G
Sbjct: 115 PHGSYSRLPFTALG 128
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 78.5 bits (194), Expect = 1e-17
Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 13/197 (6%)
Query: 6 AGYDLSASQFSPDGRVFQVEYAQ-KAVENSSTAIGLRGKDGVVIAVEKLVLSKLY--DPG 62
AG + + + + + Q KA +T +G++ +GVVIA + D
Sbjct: 2 AGLSFD--NYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKN 59
Query: 63 ANKRIFHVDTHIGL-GSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHA 121
K + + I G+G + + + + + + + + ++
Sbjct: 60 CAK-LHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFK 118
Query: 122 YTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKL 181
Y GA L++A D T G L+ + G + + ++G A +E
Sbjct: 119 YQ-----GHIGAYLIVAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK 172
Query: 182 STLSMEQLAKEAARIIY 198
L+ E+ K A+ I
Sbjct: 173 QDLTKEEAIKLASDAIQ 189
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 73.4 bits (181), Expect = 6e-16
Identities = 36/177 (20%), Positives = 74/177 (41%), Gaps = 18/177 (10%)
Query: 29 KAVENSSTAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGL-GSGLI 81
+ +E +T +G+ KD V++A E+ ++ K K++F +DT+ G+ +GL+
Sbjct: 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHK-----NGKKLFQIDTYTGMTIAGLV 57
Query: 82 SAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHD 141
+ L K E YR + N+P+ + +S ++ P+ LL+ D
Sbjct: 58 GDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQV----KYMPYMVQLLVGGID 113
Query: 142 KTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIY 198
P ++ +D +G S + G +E +++++ R I
Sbjct: 114 T--APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAIS 168
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 72.7 bits (179), Expect = 1e-15
Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 8/134 (5%)
Query: 35 STAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGL-GSGLISAGRQLAETAK 92
+T G+ KDG+V+ + + N +I + +I G+G + +
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 93 TEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVD 152
+ + G + N + + Y GA+L+L D T GP LY +
Sbjct: 61 SNLELHSLSTGRLPRVVTANRMLKQMLFRYR-----GYIGAALVLGGVDVT-GPHLYSIY 114
Query: 153 PSGVSHGYFGCAIG 166
P G + +G
Sbjct: 115 PHGSTDKLPYVTMG 128
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 72.3 bits (178), Expect = 2e-15
Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 21/169 (12%)
Query: 35 STAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGL-GSGLISAGRQL 87
+T +G++ +GVVIA + +V K ++ + I G+G + +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADK-----NCAKLHRISPKIWCAGAGTAADTEAV 55
Query: 88 AETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPS 147
+ + + + + + ++ Y GA L++A D G
Sbjct: 56 TQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-----GHIGAYLIVAGVDP-TGSH 109
Query: 148 LYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSME---QLAKEA 193
L+ + G + + ++G A +E L+ E +LA +A
Sbjct: 110 LFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDA 158
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 68.6 bits (168), Expect = 6e-14
Identities = 30/203 (14%), Positives = 72/203 (35%), Gaps = 23/203 (11%)
Query: 5 GAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEK------LVLSKL 58
A + D R + + + +T + R + G+++AV+ V S+
Sbjct: 49 IASPQQFLRAHTDDSRNPD---CKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQ- 104
Query: 59 YDPGANKRIFHVDTHIGL-GSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSM 117
K++ ++ + +G + + ++ + + I + ++ +S
Sbjct: 105 ----TVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSN 160
Query: 118 YVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSG--VSHGYFGCAIGKAKQNAKTE 175
V+ Y ++ + + +GP++Y VD G + F +G + A
Sbjct: 161 LVYQY----KGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIF--CVGSGQTFAYGV 214
Query: 176 IEKLKLSTLSMEQLAKEAARIIY 198
++ LS+E R I
Sbjct: 215 LDSNYKWDLSVEDALYLGKRSIL 237
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 64.6 bits (158), Expect = 9e-13
Identities = 28/172 (16%), Positives = 64/172 (37%), Gaps = 20/172 (11%)
Query: 36 TAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGL-GSGLISAGRQLA 88
T + R + G+++AV+ V S+ KR+ ++ + +G + +
Sbjct: 2 TTLAFRFQGGIIVAVDSRATAGNWVASQ-----TVKRVIEINPFLLGTMAGGAADCQFWE 56
Query: 89 ETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSL 148
++ + + I + ++ +S V+ Y ++ + + +GP++
Sbjct: 57 TWLGSQCRLHELREKERISVAAASKILSNLVYQYKGA----GLSMGTMICGYTRKEGPTI 112
Query: 149 YVVDPSG--VSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIY 198
Y VD G + F +G + A ++ LS+E R I
Sbjct: 113 YYVDSDGTRLKGDIF--CVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSIL 162
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 64.2 bits (157), Expect = 9e-13
Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 12/135 (8%)
Query: 36 TAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGLG-SGLISAGRQLAETAKT 93
+G+R +D V++A K V + + + + H + +G Q AE +
Sbjct: 3 IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA 62
Query: 94 EASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDK-TDGPSLYVVD 152
Y + + ++ V + P+ ++L+ +DK + P LY +D
Sbjct: 63 NIQLYSIREDYELSPQAVSSFVRQELAKSIRSRR--PYQVNVLIGGYDKKKNKPELYQID 120
Query: 153 PSG-------VSHGY 160
G +HGY
Sbjct: 121 YLGTKVELPYGAHGY 135
Score = 63.4 bits (155), Expect = 2e-12
Identities = 8/127 (6%), Positives = 22/127 (17%), Gaps = 16/127 (12%)
Query: 36 TAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQLA 88
+ + A + + T IG+ +
Sbjct: 3 HMQMVPPSAYDRAITVFSPEGRLYQVEY-----AREAVRRGTTAIGIACKDGVVLAVDRR 57
Query: 89 ETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSL 148
T+K K + + + + S+
Sbjct: 58 ITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLID----RARLEAQIYRLTYGEEISI 113
Query: 149 YVVDPSG 155
++
Sbjct: 114 EMLAKKI 120
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 63.8 bits (155), Expect = 3e-12
Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 18/197 (9%)
Query: 15 FSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIF 68
S R + + +T + L K GV++A ++ L+ S+ + ++
Sbjct: 46 RSHSTRGGDGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASR-----DVEAVY 100
Query: 69 HVDTHIGL-GSGLISAGRQLAETAKTEASEYRSKYGGNIPLH----LLNERVSMYVHAYT 123
D + +G +L E Y G + L V + A
Sbjct: 101 VTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAM 160
Query: 124 LYSMVRPFGASLLLASHDKTDGPSLYVVDPSG--VSHGYFGCAIGKAKQNAKTEIEKLKL 181
V P L + D++ + D G A+G AK+ ++K+
Sbjct: 161 QGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS 220
Query: 182 STLSMEQLAKEAARIIY 198
E + A +Y
Sbjct: 221 PDSDEETALRAAIESLY 237
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 62.2 bits (152), Expect = 5e-12
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 21/139 (15%)
Query: 36 TAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQLA 88
IG++G D V++A ++ + + +D ++F + I L G Q A
Sbjct: 3 YLIGIQGPDYVLVASDRVAASNIVQMKDDHD-----KMFKMSEKILLLCVGEAGDTVQFA 57
Query: 89 ETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSL 148
E + Y+ + G + + P+ +LLLA +D+ +GP+L
Sbjct: 58 EYIQKNVQLYKMRNGYELSPTAAANFTRR--NLADCLRSRTPYHVNLLLAGYDEHEGPAL 115
Query: 149 YVVDPSG-------VSHGY 160
Y +D +HGY
Sbjct: 116 YYMDYLAALAKAPFAAHGY 134
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 61.0 bits (149), Expect = 1e-11
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 35 STAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQL 87
+T +GL KDGVV+A EK + SK A K+I+ + + + +G + + L
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASK-----AAKKIYQIADRMAMTTAGSVGDAQFL 55
Query: 88 AETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPS 147
A K EA+ Y + + + S +++Y + P+ LL+ D G S
Sbjct: 56 ARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYF----PYLVQLLIGGIDSE-GKS 110
Query: 148 LYVVDPSG 155
+Y +DP G
Sbjct: 111 IYSIDPIG 118
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 60.7 bits (148), Expect = 2e-11
Identities = 21/149 (14%), Positives = 52/149 (34%), Gaps = 28/149 (18%)
Query: 14 QFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRI 67
+FSP V N T + + G+D ++A + + ++ + +
Sbjct: 1 RFSP------------YVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTR-----DSPKC 43
Query: 68 FHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYS 126
+ + +G SG L + + Y+ + + +S +++ +
Sbjct: 44 YKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF- 102
Query: 127 MVRPFGASLLLASHDKTDGPSLYVVDPSG 155
P+ ++ D+ ++Y DP G
Sbjct: 103 ---PYYVYNIIGGLDEEGKGAVYSFDPVG 128
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 61.0 bits (148), Expect = 2e-11
Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 21/174 (12%)
Query: 36 TAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGL-GSGLISAGRQLA 88
T + L K GV++A ++ L+ S+ ++++ D + +G +L
Sbjct: 2 TIVALTYKGGVLLAGDRRATQGNLIASR-----DVEKVYVTDEYSAAGIAGTAGIAIELV 56
Query: 89 ETAKTEASEYRSKYGGNIPLH----LLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTD 144
E Y G + L V + A V P L + D++
Sbjct: 57 RLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESR 116
Query: 145 GPSLYVVDPSGVSHGYFG--CAIGKAKQNAKTEIEKLKLSTLSMEQ---LAKEA 193
+ D G + A+G AK+ ++K+ E A E+
Sbjct: 117 AGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIES 170
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 61.3 bits (149), Expect = 2e-11
Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 19/161 (11%)
Query: 8 YDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEK------LVLSKLYDP 61
Y+ + Q+ + ++ I ++ +GV+IA + L+
Sbjct: 19 YNTQIANAGASPM----VNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFN---- 70
Query: 62 GANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVH 120
+R+ V + +G SG IS + + K +E L
Sbjct: 71 -GVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYL 129
Query: 121 AYTLY---SMVRPFGASLLLASHDKTDGPSLYVVDPSGVSH 158
A +Y S + P ++++A L V+ GV++
Sbjct: 130 ATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTY 170
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 60.4 bits (147), Expect = 3e-11
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 15/141 (10%)
Query: 28 QKAVENSSTAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGLG-SGL 80
Q+ + ++ I ++ +GV+IA + L+ + R+ V + +G SG
Sbjct: 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVE-----RLIPVGDNTVVGISGD 56
Query: 81 ISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLY---SMVRPFGASLLL 137
IS + + K +E L A +Y S + P ++++
Sbjct: 57 ISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIV 116
Query: 138 ASHDKTDGPSLYVVDPSGVSH 158
A L V+ GV++
Sbjct: 117 AGVQSNGDQFLRYVNLLGVTY 137
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 60.1 bits (146), Expect = 4e-11
Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 17/131 (12%)
Query: 33 NSSTAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGR 85
N T +G+ G+D V+A + + S+ ++F +I + +G + G
Sbjct: 8 NGGTILGIAGEDFAVLAGDTRNITDYSINSR-----YEPKVFDCGDNIVMSANGFAADGD 62
Query: 86 QLAETAKTEASEYRSKYGG-NIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTD 144
L + K Y + + ++ + ++ + P+ ++A D+
Sbjct: 63 ALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFF----PYYVHTIIAGLDEDG 118
Query: 145 GPSLYVVDPSG 155
++Y DP G
Sbjct: 119 KGAVYSFDPVG 129
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 58.0 bits (141), Expect = 1e-10
Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 17/127 (13%)
Query: 36 TAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGL-GSGLISAGRQLA 88
T + + + GV++A + + S+ K++ ++ ++ +G +
Sbjct: 2 TTLAFKFRHGVIVAADSRATAGAYIASQ-----TVKKVIEINPYLLGTMAGGAADCSFWE 56
Query: 89 ETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSL 148
+ Y + I + ++ ++ V+ Y ++ DK GP L
Sbjct: 57 RLLARQCRIYELRNKERISVAAASKLLANMVYQYKGM----GLSMGTMICGWDKR-GPGL 111
Query: 149 YVVDPSG 155
Y VD G
Sbjct: 112 YYVDSEG 118
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 56.8 bits (138), Expect = 4e-10
Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 17/127 (13%)
Query: 36 TAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQLA 88
T + ++ GVV+ + + ++ ++ + I SG + + +A
Sbjct: 2 TIMAVQFDGGVVLGADSRTTTGSYIANR-----VTDKLTPIHDRIFCCRSGSAADTQAVA 56
Query: 89 ETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSL 148
+ + + + +H + Y A +++A D +G +
Sbjct: 57 DAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-----EDLMAGIIIAGWDPQEGGQV 111
Query: 149 YVVDPSG 155
Y V G
Sbjct: 112 YSVPMGG 118
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 55.7 bits (135), Expect = 1e-09
Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 18/131 (13%)
Query: 33 NSSTAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGR 85
N + + GKD V IA + L +S ++IFH H+ LG +GL +
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSN-----KFEKIFHYG-HVFLGITGLATDVT 60
Query: 86 QLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDG 145
L E + + + Y+ K I + VS ++ P+ ++A + G
Sbjct: 61 TLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFG----PYFVGPVVAGINSKSG 116
Query: 146 -PSLYVVDPSG 155
P + D G
Sbjct: 117 KPFIAGFDLIG 127
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 54.1 bits (131), Expect = 3e-09
Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 18/127 (14%)
Query: 36 TAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGL-GSGLISAGRQLA 88
+ + + KDGV++ + + ++ ++ V I SG + + +A
Sbjct: 11 SIMAVTFKDGVILGADSRTTTGAYIANR-----VTDKLTRVHDKIWCCRSGSAADTQAIA 65
Query: 89 ETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSL 148
+ + Y S+YG + + Y A +++A +D + +
Sbjct: 66 DIVQYHLELYTSQYGTPSTETAASVFKEL------CYENKDNLTAGIIVAGYDDKNKGEV 119
Query: 149 YVVDPSG 155
Y + G
Sbjct: 120 YTIPLGG 126
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 54.2 bits (130), Expect = 8e-09
Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 18/132 (13%)
Query: 36 TAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGL-GSGLISAGRQLA 88
T + L+ GVV+A ++ ++ + ++++ D + +G + + A
Sbjct: 59 TIVALKYPGGVVMAGDRRSTQGNMISGR-----DVRKVYITDDYTATGIAGTAAVAVEFA 113
Query: 89 ETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDK-----T 143
E Y G + R+++ V +M + A LLA +D
Sbjct: 114 RLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAM-QGLLALPLLAGYDIHASDPQ 172
Query: 144 DGPSLYVVDPSG 155
+ D +G
Sbjct: 173 SAGRIVSFDAAG 184
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 53.0 bits (128), Expect = 1e-08
Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 39/149 (26%)
Query: 35 STAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQL 87
++ +G++ + GVVIA + L + RI V+ LG SG + + L
Sbjct: 9 TSVLGVKFEGGVVIAADMLGSYGSLARFRNIS-----RIMRVNNSTMLGASGDYADFQYL 63
Query: 88 AETAKTEASEYRSKYGGNIPLHLLNERVSMYVHA---------YTLYSMVRPFGASLLLA 138
+ + LL + S A Y+ S + P ++++
Sbjct: 64 KQVLGQMVIDE----------ELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIG 113
Query: 139 SHDKTDGPSLYVVDPSG-------VSHGY 160
+ L VD G ++ GY
Sbjct: 114 GYADG-ESFLGYVDMLGVAYEAPSLATGY 141
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 52.5 bits (127), Expect = 1e-08
Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 17/133 (12%)
Query: 33 NSSTAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGR 85
N + ++GK+ V IA ++ +++ ++IF + + +G +GL + +
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTT-----DFQKIFPMGDRLYIGLAGLATDVQ 61
Query: 86 QLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKT-D 144
+A+ K + Y K G I + L V+ ++ P+ ++A D
Sbjct: 62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFG----PYYTEPVIAGLDPKTF 117
Query: 145 GPSLYVVDPSGVS 157
P + +D G
Sbjct: 118 KPFICSLDLIGCP 130
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 51.0 bits (123), Expect = 4e-08
Identities = 17/127 (13%), Positives = 39/127 (30%), Gaps = 18/127 (14%)
Query: 36 TAIGLRGKDGVVIAVEK------LVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQLA 88
T + + GVV+ + V+++ ++ + I SG + + +A
Sbjct: 2 TIMAVEFDGGVVVGSDSRVSAGTAVVNR-----VFDKLSPLHQRIFCALSGSAADAQAIA 56
Query: 89 ETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSL 148
+ A + + + + V + Y A L++A D+
Sbjct: 57 DMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-----EDLLAHLIVAGWDQR-EGGQ 110
Query: 149 YVVDPSG 155
G
Sbjct: 111 VYGTMGG 117
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase,
disease mutation, DNA replication, DNA-binding,
DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo
sapiens}
Length = 1172
Score = 34.5 bits (78), Expect = 0.037
Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 10/161 (6%)
Query: 52 KLVLSKLYDPGANKRIFHVDTHIGLGSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLL 111
++Y R + + ++ E + R
Sbjct: 912 AEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISLQDLRKVQRETARKSQW 971
Query: 112 NERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSL-----YVVDPSGVSHGYFGCAIG 166
+ + A+ + F +A+ D P L ++PS V + +
Sbjct: 972 KKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVN 1031
Query: 167 KAKQNAKTEIEKLKLSTLSMEQLAKEA---ARIIYVVHDEL 204
Q++ + L L ++M+ L +E R +HDE+
Sbjct: 1032 WVVQSSAVDY--LHLMLVAMKWLFEEFAIDGRFCISIHDEV 1070
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.14
Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 28/112 (25%)
Query: 9 DLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVV-------IAV-----EKLVLS 56
DL + S F + Q V ++ LR G + I E
Sbjct: 442 DLVKNNVS-----FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 57 KL-----YDPGANKRIFHVDTHI--GLGSGLISAGRQLAETAKTEASEYRSK 101
K + PG + + G G +I AG +Y K
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG----TLDINPDDDYGFK 544
Score = 29.2 bits (65), Expect = 1.6
Identities = 34/220 (15%), Positives = 61/220 (27%), Gaps = 69/220 (31%)
Query: 6 AGYDLSASQF-SPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGAN 64
++ F S G + ++ Q A + +EK L G
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPA----------------LTLMEKAAFEDLKSKG-- 1751
Query: 65 KRIFHVDTHI-G--LG--SGLIS-AGR-QLAETAKTEASEYRSKYGGNIPLHLLNERVSM 117
+ D G LG + L S A + + YR + V
Sbjct: 1752 --LIPADATFAGHSLGEYAALASLADVMSIESLVEV--VFYRGM--------TMQVAVPR 1799
Query: 118 YVHAYTLYSM--VRP--FGASL-------LLASHDKTDGPSL-----------YVV--DP 153
+ Y M + P AS ++ K G + YV D
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL 1859
Query: 154 SGVSHGYFGCAIGKAKQNAKTEIEKLKLS-TLSMEQLAKE 192
+ +I+ ++L +LS+E++ +
Sbjct: 1860 RALD-----TVTNVLNFIKLQKIDIIELQKSLSLEEV-EG 1893
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.16
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 25/88 (28%)
Query: 164 AIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARI----IYVVHDELKDKHFELELAWVGEK 219
+I K ++ + +++L ++ MEQ +E A+ E +K+ +
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN---------KI 136
Query: 220 TNGKFEMVPQSFLEECENYAKASLQDSD 247
N + ++F ++ D+D
Sbjct: 137 NNRIAD---KAFYQQ---------PDAD 152
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.55
Identities = 7/16 (43%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 49 AVEKLVLS-KLYDPGA 63
A++KL S KLY +
Sbjct: 21 ALKKLQASLKLYADDS 36
Score = 28.0 bits (61), Expect = 1.9
Identities = 6/22 (27%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 173 KTEIEKLKLSTLSMEQLAKEAA 194
K ++KL+ ++L + A ++A
Sbjct: 19 KQALKKLQ-ASLKL--YADDSA 37
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 27.6 bits (61), Expect = 1.3
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 215 WVGEKTNGKFEMVPQSFLEECENYAKASLQDSDSD 249
+ GE +G+ +VP +F++ ++ S
Sbjct: 60 YEGELLDGQRGLVPSNFVDFVQDNESRLASTSGPS 94
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 26.9 bits (60), Expect = 2.0
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 215 WVGEKTNGKFEMVPQSFLEECENYAKASLQ 244
G+ G+ +VP ++E N K
Sbjct: 47 LEGKNNKGEQGLVPTDYVEILPNDGKDPFS 76
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national
project on protein structural AN functional analyses;
1.92A {Thermus thermophilus} PDB: 3u6u_A
Length = 269
Score = 28.3 bits (64), Expect = 2.2
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 37 AIGLRGKDGVVIAVEKLVLSKLYDPGANK--------RIFHVDTHI 74
AIGL G DG + + K + G K + V+ +
Sbjct: 97 AIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKAL 142
>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}
Length = 148
Score = 27.4 bits (60), Expect = 2.9
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 124 LYSMVRPFGASLLLASHDKTDGPSLYVVDPSG 155
++ S++ G + VDP
Sbjct: 84 IHRQWSDKEISIIQPPTQMDFGYTFVGVDPDE 115
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
d.153.1.4
Length = 171
Score = 27.6 bits (61), Expect = 3.3
Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 20/167 (11%)
Query: 36 TAIGLRGKDGVVIAVEKLVL--SKLYDPGANK-RIFHVDTHIGLGSGLISAGRQLAETAK 92
T + +R V+ + V S + A K R + +G ++ L + +
Sbjct: 2 TILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFE 61
Query: 93 TEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLY--V 150
+ E+ L + + ++R A LL+A + S V
Sbjct: 62 AKLREWGGN---------LTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEV 112
Query: 151 VDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLST-LSMEQLAKEAARI 196
+ P + AIG A + L +T LS ++ ++A I
Sbjct: 113 IQPDDDAA-----AIGSGGPYALAAAKALLRNTDLSAREIVEKAMTI 154
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 4.1
Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 21/123 (17%)
Query: 7 GYDLSASQFSPDGRVFQVEY------AQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD 60
G+ L + +F++ + QK + + STA G ++ +++L K Y
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASG--SILNTLQQL---KFYK 531
Query: 61 PGANKRIFHVDTHIGLGSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVH 120
P ++ + L++A E + SKY + + L+ E +++
Sbjct: 532 P-------YICDNDPKYERLVNAILDFLPKI--EENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 121 AYT 123
A+
Sbjct: 583 AHK 585
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 27.3 bits (60), Expect = 4.2
Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 15/165 (9%)
Query: 36 TAIGLRGKDGVVIAVEKLVL--SKLYDPGANK-RIFHVDTHIGLGSGLISAGRQLAETAK 92
T + +R VV+ + V + + A K R + + +G + L E +
Sbjct: 2 TIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFE 61
Query: 93 TEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVD 152
+ ++ L + + +R A L++A ++ + D
Sbjct: 62 RKLEMHQGH---------LLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGI-GD 111
Query: 153 PSGVSHGYFGCAIGKAKQNAKTEIEKLKLST-LSMEQLAKEAARI 196
AIG A + L +T LS ++ +++ RI
Sbjct: 112 VVQPEEDQI-LAIGSGGNYALSAARALVENTELSAHEIVEKSLRI 155
>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics,
PSI protein structure initiative; NMR {Agrobacterium
tumefaciens}
Length = 144
Score = 26.6 bits (58), Expect = 5.8
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 124 LYSMVRPFGASLLLASHDKTDGPSLYVVDPSG 155
++ + G ++L G + DP
Sbjct: 103 TFAGWKASGVAMLQQPAKMEFGYTFTAADPDS 134
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.369
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,740,728
Number of extensions: 221715
Number of successful extensions: 723
Number of sequences better than 10.0: 1
Number of HSP's gapped: 637
Number of HSP's successfully gapped: 80
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.3 bits)