RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14445
(252 letters)
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 257 bits (657), Expect = 3e-87
Identities = 161/245 (65%), Positives = 198/245 (80%), Gaps = 1/245 (0%)
Query: 2 SSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDP 61
SSIG GYDLSAS FSPDGRVFQVEYA KAVENSSTAIG+R KDGVV VEKLVLSKLY+
Sbjct: 1 SSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE 60
Query: 62 GANKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVH 120
G+NKR+F+VD H+G+ +GL++ R LA+ A+ EAS +RS +G NIPL L +RV+MYVH
Sbjct: 61 GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVH 120
Query: 121 AYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLK 180
AYTLYS VRPFG S +L S+ DG LY++DPSGVS+GY+GCAIGKA+Q AKTEIEKL+
Sbjct: 121 AYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ 180
Query: 181 LSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAK 240
+ ++ + KE A+IIY+VHDE+KDK FELEL+WVGE TNG+ E+VP+ EE E YAK
Sbjct: 181 MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240
Query: 241 ASLQD 245
SL++
Sbjct: 241 ESLKE 245
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 218 bits (557), Expect = 3e-72
Identities = 116/244 (47%), Positives = 155/244 (63%), Gaps = 6/244 (2%)
Query: 5 GAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGAN 64
G GYDLS S FSPDGR FQVEYA KAVEN +T+IG++ DGVV AVEKL+ SKL P N
Sbjct: 1 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKN 60
Query: 65 KRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYT 123
+I VD HIG SGLI GR L + EA+ ++ Y IP+ +R+ YV A+T
Sbjct: 61 VKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHT 120
Query: 124 LYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL---K 180
LY+ VRPFG S + DK +G LY+++PSG GY G A GK +Q+AK E+EKL
Sbjct: 121 LYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHH 179
Query: 181 LSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVG-EKTNGKFEMVPQSFLEECENYA 239
LS + K+AA+IIY+ H++ K+K FELE++W +TNG + V L+E ++A
Sbjct: 180 PEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFA 239
Query: 240 KASL 243
+ +
Sbjct: 240 QKEI 243
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 191 bits (487), Expect = 1e-61
Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 13/240 (5%)
Query: 8 YDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRI 67
YD + FSP+GR+FQVEY +A++ STAIG++ +GV +AVEK + S L +P + ++I
Sbjct: 1 YDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKI 60
Query: 68 FHVDTHIGL-GSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYS 126
+D HIG SGLI+ + L + A+ E + Y + + + + VS +
Sbjct: 61 VEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED 120
Query: 127 -----MVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKL 181
M RPFG +LL D+ GP L+ +DPSG AIG A + A++ +++L
Sbjct: 121 ADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYH 179
Query: 182 STLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKA 241
++++++ K + I+ V +E K +ELA V F M + EE E K
Sbjct: 180 KSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQP--GQNFHMFTK---EELEEVIKD 233
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 187 bits (477), Expect = 4e-60
Identities = 79/236 (33%), Positives = 122/236 (51%), Gaps = 8/236 (3%)
Query: 7 GYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKR 66
GYD + + FSPDGR+FQVEYA++AV+ +TAIG++ K+GV++ +K V SKL + ++
Sbjct: 4 GYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEK 63
Query: 67 IFHVDTHIGL-GSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLY 125
I+ +D HI SGL++ R L + A+ EA R Y I + L +++ + YT Y
Sbjct: 64 IYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQY 123
Query: 126 SMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLS 185
VRPFG SLL+A + + P LY DPSG Y AIG + EK LS
Sbjct: 124 GGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLS 181
Query: 186 MEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKA 241
+ + + + + +E+ +V + F+ V EE + Y +
Sbjct: 182 FDDAMVLGLVAMGLSIES-ELVPENIEVGYVK-VDDRTFKEVSP---EELKPYVER 232
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 187 bits (475), Expect = 9e-60
Identities = 74/241 (30%), Positives = 122/241 (50%), Gaps = 9/241 (3%)
Query: 5 GAGYDLSASQFSPDGRVFQVEYAQKAVENSS-TAIGLRGKDGVVIAVEKLVLSKLYDPGA 63
AG+D + FSP+GR++QVEYA KA+ T++ +RGKD VI +K V KL D
Sbjct: 5 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSST 64
Query: 64 NKRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAY 122
+F + +IG +G+ + R + A+ EA+ ++ KYG IP+ +L +R++ Y
Sbjct: 65 VTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVY 124
Query: 123 TLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEK--LK 180
T + +RP G ++L D+ GP +Y DP+G G+ A G + + + +EK K
Sbjct: 125 TQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKK 184
Query: 181 LSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAK 240
+ EQ + A + V K E+E+ V N KF ++ + E + +
Sbjct: 185 KFDWTFEQTVETAITCLSTVLSI-DFKPSEIEVGVVT-VENPKFRILTE---AEIDAHLV 239
Query: 241 A 241
A
Sbjct: 240 A 240
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 183 bits (465), Expect = 3e-58
Identities = 74/222 (33%), Positives = 110/222 (49%), Gaps = 6/222 (2%)
Query: 1 MSSIGAGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYD 60
M+ Y S + FSP G++ Q++YA AV+ T++G++ +GVVIA EK S L
Sbjct: 1 MTD---RYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAM 57
Query: 61 PGANKRIFHVDTHIGL-GSGLISAGRQLAETAKTEA-SEYRSKYGGNIPLHLLNERVSMY 118
++ + IG SG+ R L + ++ A + Y+ YG P LL V+
Sbjct: 58 SETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKI 117
Query: 119 VHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEK 178
+ T VRPFG SLL+A HD+ +G SLY VDPSG + AIGK AKT +EK
Sbjct: 118 MQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEK 177
Query: 179 LKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKT 220
L +E A + + + +ELA +G++
Sbjct: 178 RWNDELELEDAIHIALLTLKESVEG-EFNGDTIELAIIGDEN 218
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 182 bits (464), Expect = 4e-58
Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 12/238 (5%)
Query: 8 YDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRI 67
YD + +SP GR+ Q+EYA +AV+ S +GL+ K V+ K S+L K+I
Sbjct: 3 YDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAH--QKKI 60
Query: 68 FHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYS 126
HVD HIG+ +GL + R L + E + R + +P+ L + T
Sbjct: 61 LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 120
Query: 127 MVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEK--LKLSTL 184
RP+G LL+A +D GP ++ PS +IG Q+A+T +E+ +
Sbjct: 121 GRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMEC 179
Query: 185 SMEQLAKEAARIIYVVHDELKD-KHFELELAWVGEKTNGKFEMVPQSFLEECENYAKA 241
++ +L K R + +D + + VG+ + +F + ++ + +
Sbjct: 180 NLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGK--DLEFTIYDD---DDVSPFLEG 232
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 181 bits (461), Expect = 1e-57
Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 2/218 (0%)
Query: 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGAN- 64
YD + FSP+GR++QVEYA +++ ++ TAIG+ DG+V+A E+ V S L + +
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTST 62
Query: 65 KRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYT 123
++++ ++ I + +GL + L TA+ A Y Y +IP+ +L R+S YT
Sbjct: 63 EKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYT 122
Query: 124 LYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLST 183
+ +RPFG S + A +D G LY +PSG G+ ++G A+T ++
Sbjct: 123 QHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDD 182
Query: 184 LSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTN 221
+ ++ + A + + D + LE A + + N
Sbjct: 183 MKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAN 220
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 182 bits (462), Expect = 1e-57
Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 7/244 (2%)
Query: 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDP-GAN 64
YD + FSP+GR++QVEYA +A+ ++ T +G+ DGV++A E+ + KL D +
Sbjct: 2 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 61
Query: 65 KRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYT 123
++I+ ++ + +G+ S L + A Y +Y IP L + AYT
Sbjct: 62 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 121
Query: 124 LYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEK-LKLS 182
+ RPFG SLL DK G LY DPSG G+ IG A + +++ K
Sbjct: 122 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEG 181
Query: 183 TLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNG-KFEMVPQSFLEECENYAKA 241
++++ A +++ D K ++E+A + + ++ Q +E E K
Sbjct: 182 EMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQ---KEVEQLIKK 238
Query: 242 SLQD 245
++
Sbjct: 239 HEEE 242
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 178 bits (452), Expect = 2e-56
Identities = 69/247 (27%), Positives = 122/247 (49%), Gaps = 11/247 (4%)
Query: 8 YDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRI 67
YD + + FSPDG +FQVEYAQ+AV+ STA+G+RG+D VV+ VEK ++KL D ++I
Sbjct: 2 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 61
Query: 68 FHVDTHIGL-GSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYS 126
+D ++ + +GL + R + A+ E +R + + + ++ YT +
Sbjct: 62 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 121
Query: 127 MVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKL--STL 184
RPFG S L+ D P LY DPSG H + AIG+ ++ + +EK +
Sbjct: 122 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 181
Query: 185 SMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKASLQ 244
+ + K + + + ++ +ELA + + +++ EE E Y +
Sbjct: 182 TDDLTIKLVIKALL---EVVQSGGKNIELAVMRR--DQSLKILNP---EEIEKYVAEIEK 233
Query: 245 DSDSDND 251
+ + +
Sbjct: 234 EKEENEK 240
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 176 bits (447), Expect = 1e-55
Identities = 79/238 (33%), Positives = 119/238 (50%), Gaps = 13/238 (5%)
Query: 6 AGYDLSASQFSPDGRVFQVEYAQKAVENSS-TAIGLRGKDGVVIAVEKLVLSKLYDPGAN 64
AGYD + FSP+GR++QVEYA KA ++ ++ +RGKD V+ +K V KL DP
Sbjct: 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTV 60
Query: 65 KRIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYT 123
IF + IG+ +G I R A AK EA+E+R KYG ++P +L +R++ YT
Sbjct: 61 SYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYT 120
Query: 124 LYSMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEK----- 178
+ +RP G L S D+ GPS+Y DP+G GY A G +Q T +E
Sbjct: 121 QRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKS 180
Query: 179 --LKLSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEE 234
++ S E++ + A + + +LE+ T KF + +EE
Sbjct: 181 KIDHINEESWEKVVEFAITHMIDALGT-EFSKNDLEVGVA---TKDKFFTLSAENIEE 234
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 175 bits (445), Expect = 2e-55
Identities = 63/236 (26%), Positives = 95/236 (40%), Gaps = 13/236 (5%)
Query: 8 YDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRI 67
YD FSP GR+FQVEYA +A++ S +GLR V+ K +L K+I
Sbjct: 5 YDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSY--QKKI 62
Query: 68 FHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYS 126
D H+GL +GL R L+ + + + + + + + T
Sbjct: 63 IKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSY 122
Query: 127 MVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL----KLS 182
RP+G LL+ +DK G L PSG +G AIG Q AKT +E+
Sbjct: 123 GGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKI 181
Query: 183 TLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENY 238
+ ++L K I + L +A VG+ + F + E Y
Sbjct: 182 DGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGK--DTPFTIYDG---EAVAKY 232
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 175 bits (445), Expect = 2e-55
Identities = 76/240 (31%), Positives = 123/240 (51%), Gaps = 13/240 (5%)
Query: 9 DLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIF 68
D S FSP+GR+FQVEY+ +A++ STAIG+ K+GVV+ VEK S L + + ++I
Sbjct: 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIV 60
Query: 69 HVDTHIGL-GSGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLY-- 125
+D HIG SGL + R + E A+T A + Y +I + L + V +
Sbjct: 61 EIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 120
Query: 126 ----SMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKL 181
M RPFG +LL+A HD DG L+ +PSG + Y AIG + A+ E+
Sbjct: 121 GEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH 180
Query: 182 STLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKA 241
S+L++++ +I+ V +E D+ +L+ + ++ F++ E+ K
Sbjct: 181 SSLTLKEAELLVLKILKQVMEEKLDE-NNAQLSCITKQD--GFKIYDN---EKTAELIKE 234
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 173 bits (440), Expect = 2e-54
Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 14/241 (5%)
Query: 7 GYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPG-ANK 65
GYD + S FSPDG +FQVEYA +AV+ + A+G++GK+ VV+ E+ KL D
Sbjct: 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPS 60
Query: 66 RIFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTL 124
++ +D+H+ L SGL + R L E A+ EA +R + + L V+ YT
Sbjct: 61 KVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQ 120
Query: 125 YSMVRPFGASLLLASHD-KTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL---K 180
VRPFG S L+A D + D P LY +PSG+ + IG+ + + +EK K
Sbjct: 121 SGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRK 180
Query: 181 LSTLSMEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAK 240
++E+ K R + + ++ +E+ V + + EE Y
Sbjct: 181 EPPATVEECVKLTVRSLL---EVVQTGAKNIEITVVKP--DSDIVALSS---EEINQYVT 232
Query: 241 A 241
Sbjct: 233 Q 233
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 173 bits (439), Expect = 2e-54
Identities = 74/236 (31%), Positives = 109/236 (46%), Gaps = 9/236 (3%)
Query: 7 GYDLSASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKR 66
GY S + FSP G++ Q+EYA AV + ++G++ +GVV+A EK S LYD + +
Sbjct: 4 GYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHK 63
Query: 67 IFHVDTHIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLY 125
+ + HIGL SG+ R L A+ A +Y Y IP L +RV+ + YT
Sbjct: 64 VEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQS 123
Query: 126 SMVRPFGASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLS 185
VRPFG SLL+ P L+ DPSG + A+GK N KT +EK L
Sbjct: 124 GGVRPFGVSLLICG-WNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLE 182
Query: 186 MEQLAKEAARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKA 241
+E A + + + +E+ E F + E ++Y A
Sbjct: 183 LEDAIHTAILTLKESFEG-QMTEDNIEVGICNEA---GFRRLTP---TEVKDYLAA 231
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 169 bits (428), Expect = 6e-53
Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 5/221 (2%)
Query: 15 FSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHI 74
FSPDGR+FQVEYA++AV+ STA+G++ +GV++ +K V S+L + + ++I +D ++
Sbjct: 3 FSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYV 62
Query: 75 GLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGA 133
SGL++ R L + A+ A + + YG + + L +RV+ + YT Y VRP+G
Sbjct: 63 AAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGV 122
Query: 134 SLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEA 193
SL+ A D+ GP L+ DP+G + Y AIG K + +E+ L ++
Sbjct: 123 SLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLG 181
Query: 194 ARIIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEE 234
+ + +E ++ E+A + K+ + Q +++
Sbjct: 182 IKALKSSLEE-GEELKAPEIASIT--VGNKYRIYDQEEVKK 219
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 113 bits (284), Expect = 2e-31
Identities = 35/234 (14%), Positives = 70/234 (29%), Gaps = 23/234 (9%)
Query: 12 ASQFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVD 71
A Q D + E A+K + + + L +DGV+ E A ++ +
Sbjct: 1 AEQIMRD----RSELARKGIARGRSVVVLTFRDGVLFVAENP-------STALHKVSELY 49
Query: 72 THIGLG-SGLISAGRQLAETAKTEASEYRSKYGGN-IPLHLLNERVSMYVHAYTLYSMVR 129
+G G + L A Y + L + + +
Sbjct: 50 DRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQP-K 108
Query: 130 PFGASLLLASHDKT---DGPSLYVVDPSGVSHGYFGCAIG-KAKQNAKTEIEKLKLSTLS 185
P+ + +A + P LY + G + + T + + + L
Sbjct: 109 PYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLD 168
Query: 186 MEQLAKEAARIIYVVHDELKDKHF----ELELAWVG-EKTNGKFEMVPQSFLEE 234
+E A + +K LE+A + + F + + LE+
Sbjct: 169 LEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQ 222
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 95.2 bits (236), Expect = 2e-24
Identities = 38/224 (16%), Positives = 79/224 (35%), Gaps = 13/224 (5%)
Query: 28 QKAVENSSTAIGLRGKDGVVIAVEKLV-LSKLYDPGANKRIFHVDTHIGLG-SGLISAGR 85
Q+ + ++ I ++ +GV+IA + L L +R+ V + +G SG IS +
Sbjct: 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQ 61
Query: 86 QLAETAKTEASEYRSKYGGNIPLHLLN-ERVSMYV--HAYTLYSMVRPFGASLLLASHDK 142
+ K +E L + Y+ Y S + P ++++A
Sbjct: 62 HIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS 121
Query: 143 TDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL-----KLSTLSMEQLAKEAARII 197
L V+ GV++ A G A + K+ + +++ + +
Sbjct: 122 NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAM 181
Query: 198 YVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEEC-ENYAK 240
V++ LA + + N +E ++AK
Sbjct: 182 RVLYYRDARSSRNFSLAIIDK--NTGLTFKKNLQVENMKWDFAK 223
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 93.3 bits (231), Expect = 6e-24
Identities = 26/210 (12%), Positives = 70/210 (33%), Gaps = 11/210 (5%)
Query: 36 TAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGLG-SGLISAGRQLAETAKT 93
T + ++ GVV+ + + Y ++ + I SG + + +A+
Sbjct: 2 TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY 61
Query: 94 EASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDP 153
+ + + +H Y A +++A D +G +Y V
Sbjct: 62 QLGFHSIELNEPPLVHTAASLFKEM-----CYRYREDLMAGIIIAGWDPQEGGQVYSVPM 116
Query: 154 SGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELEL 213
G+ G ++ ++ E+ + A + + + + L
Sbjct: 117 GGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRL 176
Query: 214 AWVGEKTNGKFEMVPQSFLEECENYAKASL 243
A + ++ + +++ ++ +A A+L
Sbjct: 177 AAI-AESGVERQVLLG---DQIPKFAVATL 202
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 92.2 bits (228), Expect = 2e-23
Identities = 41/208 (19%), Positives = 84/208 (40%), Gaps = 13/208 (6%)
Query: 36 TAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGL-GSGLISAGRQLAETAKT 93
T +G+ KD V++A E+ V + + N K++F +DT+ G+ +GL+ + L K
Sbjct: 2 TTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKA 61
Query: 94 EASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDP 153
E YR + N+P+ E V+ + P+ LL+ D P ++ +D
Sbjct: 62 ELELYRLQRRVNMPI----EAVATLLSNMLNQVKYMPYMVQLLVGGID--TAPHVFSIDA 115
Query: 154 SGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELEL 213
+G S + G +E +++++ R I +++
Sbjct: 116 AGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDV 175
Query: 214 AWVGEKTNGKFEMVPQSFLEECENYAKA 241
A + K + +P ++ E+ +
Sbjct: 176 AVITRKD--GYVQLPT---DQIESRIRK 198
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 92.6 bits (229), Expect = 2e-23
Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 17/167 (10%)
Query: 14 QFSPDGRVFQVEYAQKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDT 72
QF+P Y +N T +G+ G+D V+A + ++ ++F
Sbjct: 1 QFNP--------Y----GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGD 48
Query: 73 HIGLG-SGLISAGRQLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPF 131
+I + +G + G L + K Y + + + P+
Sbjct: 49 NIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSI---NSAARNIQHLLYGKRFFPY 105
Query: 132 GASLLLASHDKTDGPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEK 178
++A D+ ++Y DP G A G A ++
Sbjct: 106 YVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDN 152
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 91.0 bits (225), Expect = 7e-23
Identities = 27/191 (14%), Positives = 64/191 (33%), Gaps = 8/191 (4%)
Query: 36 TAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGLG-SGLISAGRQLAETAKT 93
T +G++ +GVVIA + N ++ + I +G + + + +
Sbjct: 2 TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS 61
Query: 94 EASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDP 153
+ + + + L+ GA L++A D G L+ +
Sbjct: 62 NIELHSLYTSREPRVVSA-----LQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHA 115
Query: 154 SGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELEL 213
G + + ++G A +E L+ E+ K A+ I +++
Sbjct: 116 HGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDV 175
Query: 214 AWVGEKTNGKF 224
+ + ++
Sbjct: 176 CVMEIGKDAEY 186
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 89.4 bits (221), Expect = 2e-22
Identities = 33/201 (16%), Positives = 68/201 (33%), Gaps = 10/201 (4%)
Query: 36 TAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGLG-SGLISAGRQLAETAKT 93
T + + + GV++A + + Y K++ ++ ++ +G +
Sbjct: 2 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR 61
Query: 94 EASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDP 153
+ Y + I + ++ ++ V+ Y ++ DK GP LY VD
Sbjct: 62 QCRIYELRNKERISVAAASKLLANMVYQYKGM----GLSMGTMICGWDK-RGPGLYYVDS 116
Query: 154 SGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELEL 213
G ++G A +++ L +EQ A R IY + L
Sbjct: 117 EGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNL 176
Query: 214 AWVGEKTNGKFEMVPQSFLEE 234
V E + V + +
Sbjct: 177 YHVRED---GWIRVSSDNVAD 194
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 89.8 bits (222), Expect = 2e-22
Identities = 31/209 (14%), Positives = 63/209 (30%), Gaps = 11/209 (5%)
Query: 36 TAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGLG-SGLISAGRQLAETAKT 93
T G+ KDG+V+ + + N +I + +I +G + + +
Sbjct: 2 TIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISS 61
Query: 94 EASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDP 153
+ G + N + + Y GA+L+L D GP LY + P
Sbjct: 62 NLELHSLSTGRLPRVVTANRMLKQMLFRYR-----GYIGAALVLGGVDV-TGPHLYSIYP 115
Query: 154 SGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELEL 213
G + +G A E + E+ + I ++L
Sbjct: 116 HGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDL 175
Query: 214 AWVGEKTNGKFEMVPQSFLEECENYAKAS 242
+ + K + + + +
Sbjct: 176 CVI---SKNKLDFLRPYTVPNKKGTRLGR 201
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 87.9 bits (217), Expect = 6e-22
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 14/208 (6%)
Query: 36 TAIGLRGKDGVVIAVEKLV-LSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQLAETAKT 93
T +GL KDGVV+A EK + A K+I+ + + + +G + + LA K
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61
Query: 94 EASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDP 153
EA+ Y + + + S +++Y P+ LL+ D +G S+Y +DP
Sbjct: 62 EANLYEIRRERKPTVRAIATLTSNLLNSY----RYFPYLVQLLIGGIDS-EGKSIYSIDP 116
Query: 154 SGVSHGYFGC-AIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELE 212
G + A G A +E + +++ + A R IY ++
Sbjct: 117 IGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGID 176
Query: 213 LAWVGEKTNGKFEMVPQSFLEECENYAK 240
+ + E +F EE E
Sbjct: 177 VVKITED---EFYQYSP---EEVEQILA 198
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 86.4 bits (213), Expect = 3e-21
Identities = 29/201 (14%), Positives = 68/201 (33%), Gaps = 9/201 (4%)
Query: 36 TAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGLG-SGLISAGRQLAETAKT 93
T + R + G+++AV+ + + KR+ ++ + +G + + +
Sbjct: 2 TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS 61
Query: 94 EASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDP 153
+ + + I + ++ +S V+ Y ++ + + +GP++Y VD
Sbjct: 62 QCRLHELREKERISVAAASKILSNLVYQYKGA----GLSMGTMICGYTRKEGPTIYYVDS 117
Query: 154 SGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDELKDKHFELEL 213
G +G + A ++ LS+E R I + L
Sbjct: 118 DGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNL 177
Query: 214 AWVGEKTNGKFEMVPQSFLEE 234
V E + + E
Sbjct: 178 YHVTED---GWIYHGNHDVGE 195
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 84.9 bits (209), Expect = 1e-20
Identities = 35/221 (15%), Positives = 69/221 (31%), Gaps = 21/221 (9%)
Query: 36 TAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGLG-SGLISAGRQLAETAKT 93
T + L K GV++A ++ + ++++ D + G +G +L
Sbjct: 2 TIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAV 61
Query: 94 EASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSM----VRPFGASLLLASHDKTDGPSLY 149
E Y G + R++ V +M V P L + D++ +
Sbjct: 62 ELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121
Query: 150 VVDPSGVSHGYFG--CAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDE---- 203
D G + A+G AK+ ++K+ E + A +Y D+
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSAT 181
Query: 204 ---LKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAKA 241
+ + T V + E A+
Sbjct: 182 GGPDLTRGIYPTAVTI---TQAGAVHVSE---ETTSELARR 216
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 83.7 bits (206), Expect = 3e-20
Identities = 40/218 (18%), Positives = 81/218 (37%), Gaps = 11/218 (5%)
Query: 28 QKAVENSSTAIGLRGKDGVVIAVEKLV-LSKLYDPGANKRIFHVDTHIGLG-SGLISAGR 85
Q + ++ +G++ + GVVIA + L L RI V+ LG SG + +
Sbjct: 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQ 61
Query: 86 QLAETAKTEASEYRSKYGG-NIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTD 144
L + + G + ++ ++ + Y+ S + P ++++ + +
Sbjct: 62 YLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYADGE 119
Query: 145 GPSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKL--KLSTLSMEQLAKEAARIIYVVHD 202
L VD GV++ A G A+ + ++ K LS + R + V++
Sbjct: 120 -SFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYY 178
Query: 203 ELKDKHFELELAWVGEKTNGKFEMVPQSFLEECENYAK 240
+ + A V T E+ E + A
Sbjct: 179 RDARSYNRFQTATV---TEKGVEIEGPLSTETNWDIAH 213
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 82.9 bits (204), Expect = 6e-20
Identities = 34/173 (19%), Positives = 58/173 (33%), Gaps = 7/173 (4%)
Query: 33 NSSTAIGLRGKDGVVIAVEKLVLSKLYDPGANKRIFHVDTHIGLG-SGLISAGRQLAETA 91
N + + GKD V IA + + S+ H+ LG +GL + L E
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTLNEMF 66
Query: 92 KTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDG-PSLYV 150
+ + + Y+ K I + VS ++ P+ ++A + G P +
Sbjct: 67 RYKTNLYKLKEERAIEPETFTQLVSSSLYERRF----GPYFVGPVVAGINSKSGKPFIAG 122
Query: 151 VDPSGV-SHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHD 202
D G G A E L L E L + ++ + D
Sbjct: 123 FDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAAD 175
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 81.7 bits (201), Expect = 1e-19
Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 5/170 (2%)
Query: 36 TAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGLG-SGLISAGRQLAETAKT 93
+G+R +D V++A K V + + + + H + +G Q AE +
Sbjct: 3 IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA 62
Query: 94 EASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKT-DGPSLYVVD 152
Y + + ++ V + RP+ ++L+ +DK + P LY +D
Sbjct: 63 NIQLYSIREDYELSPQAVSSFVRQELAKS--IRSRRPYQVNVLIGGYDKKKNKPELYQID 120
Query: 153 PSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHD 202
G A G + + ++ ++ E+ + +
Sbjct: 121 YLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEK 170
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 81.3 bits (200), Expect = 2e-19
Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 8/178 (4%)
Query: 28 QKAVENSSTAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGL-GSGLISAGR 85
+ V ++ + + KDGV++ + + Y ++ V I SG + +
Sbjct: 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQ 62
Query: 86 QLAETAKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDG 145
+A+ + Y S+YG V Y A +++A +D +
Sbjct: 63 AIADIVQYHLELYTSQYGTPSTETA------ASVFKELCYENKDNLTAGIIVAGYDDKNK 116
Query: 146 PSLYVVDPSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHDE 203
+Y + G H G +K +S E+ +
Sbjct: 117 GEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKW 174
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 73.0 bits (178), Expect = 3e-16
Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 8/174 (4%)
Query: 33 NSSTAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGLG-SGLISAGRQLAET 90
N + ++GK+ V IA ++ + + ++IF + + +G +GL + + +A+
Sbjct: 6 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 65
Query: 91 AKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPS-LY 149
K + Y K G I + L V+ ++ P+ ++A D +
Sbjct: 66 LKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFG----PYYTEPVIAGLDPKTFKPFIC 121
Query: 150 VVDPSGVSHGYFGCAIG-KAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHD 202
+D G + + E L + + L + ++ + D
Sbjct: 122 SLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVD 175
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 72.6 bits (177), Expect = 3e-16
Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 4/170 (2%)
Query: 35 STAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGLGS-GLISAGRQLAETAK 92
IG++G D V++A +++ S + + ++F + I L G Q AE +
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61
Query: 93 TEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVD 152
Y+ + G + + P+ +LLLA +D+ +GP+LY +D
Sbjct: 62 KNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRT--PYHVNLLLAGYDEHEGPALYYMD 119
Query: 153 PSGVSHGYFGCAIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARIIYVVHD 202
A G + +++ T+S E+ + + + +
Sbjct: 120 YLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQK 169
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 61.5 bits (148), Expect = 5e-12
Identities = 21/181 (11%), Positives = 59/181 (32%), Gaps = 15/181 (8%)
Query: 33 NSSTAIGLRGKDGVVIAVEKLVLSKLYDPGAN-KRIFHVDTHIGLG-SGLISAGRQLAET 90
N T + + G+D ++A + + + + + + +G SG L +
Sbjct: 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 67
Query: 91 AKTEASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYV 150
+ Y+ + + +S +++ + ++ D+ ++Y
Sbjct: 68 IEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYV----YNIIGGLDEEGKGAVYS 123
Query: 151 VDPSGVSHGYFGCAIGKAKQNAKTEIE---------KLKLSTLSMEQLAKEAARIIYVVH 201
DP G A G A + ++ ++ LS+++ + +
Sbjct: 124 FDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 183
Query: 202 D 202
+
Sbjct: 184 E 184
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 43.6 bits (102), Expect = 5e-06
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 12/163 (7%)
Query: 36 TAIGLRGKDGVVIAVEKLV-LSKLYDPGANKRIFHVDTHIGLGSGLISAGRQLAETAKTE 94
T + +R V+ + V G +++ + L AG +
Sbjct: 2 TILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLA---GFAGSVADAMTLFD 58
Query: 95 ASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPS 154
E + + N + A + LL DK + + +
Sbjct: 59 RFEAKLRE------WGGNLTKAAVELAKDWRTDRVLRRLEALLLVADK-ENIFIISGNGE 111
Query: 155 GVSHGYFGCAIGKAKQNAKTEIEKLKLST-LSMEQLAKEAARI 196
+ AIG A + L +T LS ++ ++A I
Sbjct: 112 VIQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREIVEKAMTI 154
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 42.5 bits (99), Expect = 1e-05
Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 11/163 (6%)
Query: 36 TAIGLRGKDGVVIAVEKLV-LSKLYDPGANKRIFHVDTHIGLGSGLISAGRQLAETAKTE 94
T + +R VV+ + V L G +++ + L AG E
Sbjct: 2 TIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGF---AGGTADAFTLFE 58
Query: 95 ASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDPS 154
E + + L S A + +L D+ + + +
Sbjct: 59 LFERKLEMHQGHLLK------SAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDV 112
Query: 155 GVSHGYFGCAIGKAKQNAKTEIEKLKLST-LSMEQLAKEAARI 196
AIG A + L +T LS ++ +++ RI
Sbjct: 113 VQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRI 155
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 38.6 bits (89), Expect = 2e-04
Identities = 18/164 (10%), Positives = 43/164 (26%), Gaps = 11/164 (6%)
Query: 36 TAIGLRGKDGVVIAVEKLV--LSKLYDPGANKRIFHVDTHIGLGSGLISAGRQLAETAKT 93
T ++ K ++ + V + +++ + L AG
Sbjct: 7 TIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGF---AGSVADAFTLF 63
Query: 94 EASEYRSKYGGNIPLHLLNERVSMYVHAYTLYSMVRPFGASLLLASHDKTDGPSLYVVDP 153
E E + + E + L + + + D
Sbjct: 64 EKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDD 123
Query: 154 SGVSHGYFGC-AIGKAKQNAKTEIEKLKLSTLSMEQLAKEAARI 196
++ G G A+ + K ++S ++A+ A
Sbjct: 124 GILAIGSGGNYALAAGRALKKHA-----GESMSASEIARAALET 162
>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 27.5 bits (61), Expect = 0.35
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 196 IIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEE 234
++ ++ + D W NG +P +++E
Sbjct: 30 LMAILSKK--DPLGRDSDWWKVRTKNGNIGYIPYNYIEI 66
>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 25.9 bits (57), Expect = 1.1
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 215 WVGEKTNGKFEMVPQSFLEECEN 237
W NG+ +P +++ E E+
Sbjct: 44 WRARDKNGQEGYIPSNYVTEAED 66
>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 57
Score = 25.8 bits (57), Expect = 1.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 215 WVGEKTNGKFEMVPQSFLEE 234
W E + GK M+P ++E+
Sbjct: 37 WNAEDSEGKRGMIPVPYVEK 56
>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus
[TaxId: 10090]}
Length = 53
Score = 25.2 bits (55), Expect = 1.4
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 215 WVGEKTNGKFEMVPQSFLEE 234
W + NG P S+L E
Sbjct: 34 WRVQDKNGHEGYAPSSYLVE 53
>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 25.6 bits (56), Expect = 1.7
Identities = 3/22 (13%), Positives = 13/22 (59%)
Query: 215 WVGEKTNGKFEMVPQSFLEECE 236
+ + G+ ++P +++++ E
Sbjct: 43 YKAKNKVGREGIIPANYVQKRE 64
>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 25.5 bits (55), Expect = 2.7
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 215 WVGEKTNGKFEMVPQSFLEECENYAKASLQDS 246
+ GE +G+ +VP +F++ ++ S
Sbjct: 60 YEGELLDGQRGLVPSNFVDFVQDNESRLASTS 91
>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 24.8 bits (54), Expect = 3.1
Identities = 3/41 (7%), Positives = 10/41 (24%), Gaps = 7/41 (17%)
Query: 196 IIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEECE 236
++ W G +P +++ +
Sbjct: 26 EYIILEKNDLHW-------WRARDKYGSEGYIPSNYVTGKK 59
>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 24.8 bits (54), Expect = 3.6
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 196 IIYVVHDELKDKHFELELAWVGEKTNGKFEMVPQSFLEE 234
+ V+ D + W + G+ +VP++++
Sbjct: 30 TMEVIEKPENDPEW-----WKCKNARGQVGLVPKNYVVV 63
>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 24.3 bits (53), Expect = 3.8
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 215 WVGEKTNGKFEMVPQSFLEECE 236
GE GK + P+ F+E+
Sbjct: 41 LEGES-KGKVGIFPKVFVEDSA 61
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 538
Score = 26.4 bits (58), Expect = 4.5
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 103 GGNI---PLHLL-----NERVSMYVHAYTLYSMVRPFGASLLLAS 139
G N+ P H L R Y A+ ++ V GA L AS
Sbjct: 450 GANLTFFPQHFLGRQGMPRRYIDYPEAFATWNFVSSLGAFLSFAS 494
>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment)
{Thermus aquaticus [TaxId: 271]}
Length = 409
Score = 25.0 bits (53), Expect = 9.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 187 EQLAKEAARIIYVVHDEL 204
+L + AR++ VHDEL
Sbjct: 348 PRLEEMGARMLLQVHDEL 365
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.369
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 880,738
Number of extensions: 38455
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 51
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.0 bits)