BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14446
         (125 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NVT|A Chain A, 1.95 Angstrom Crystal Structure Of A Bifunctional
           3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
           (AROA) FROM LISTERIA Monocytogenes Egd-E
 pdb|3NVT|B Chain B, 1.95 Angstrom Crystal Structure Of A Bifunctional
           3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
           (AROA) FROM LISTERIA Monocytogenes Egd-E
 pdb|3TFC|A Chain A, 1.95 Angstrom Crystal Structure Of A Bifunctional
           3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
           (AROA) FROM LISTERIA Monocytogenes Egd-E In Complex With
           Phosphoenolpyruvate
 pdb|3TFC|B Chain B, 1.95 Angstrom Crystal Structure Of A Bifunctional
           3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
           (AROA) FROM LISTERIA Monocytogenes Egd-E In Complex With
           Phosphoenolpyruvate
          Length = 385

 Score = 26.2 bits (56), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 6/29 (20%)

Query: 87  EDNSKTLL------KQEAVVTVRGIPLSS 109
           ED+SK LL      K++ +VTV+G+P+ +
Sbjct: 112 EDHSKALLVSRKNKKEDTIVTVKGLPIGN 140


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,466,102
Number of Sequences: 62578
Number of extensions: 120369
Number of successful extensions: 188
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 7
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)