Query psy14446
Match_columns 125
No_of_seqs 106 out of 414
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 20:04:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04707 PRELI: PRELI-like fam 100.0 1.3E-48 2.9E-53 284.8 17.4 125 1-125 15-142 (157)
2 KOG3336|consensus 100.0 1.8E-46 3.9E-51 274.1 15.2 125 1-125 29-156 (185)
3 KOG3337|consensus 100.0 1.5E-37 3.2E-42 227.6 3.1 124 1-125 30-154 (201)
4 PF10698 DUF2505: Protein of u 96.7 0.13 2.7E-06 37.2 15.8 104 12-121 40-146 (159)
5 PF02121 IP_trans: Phosphatidy 96.0 0.033 7.2E-07 43.8 7.3 74 7-85 39-118 (254)
6 cd08889 SRPBCC_PITPNM1-2_like 93.1 0.78 1.7E-05 36.3 8.2 53 7-60 39-97 (260)
7 cd07815 SRPBCC_PITP Lipid-bind 92.5 0.18 3.9E-06 39.6 3.9 53 7-60 37-95 (251)
8 KOG3668|consensus 92.2 1.4 3E-05 34.8 8.4 46 7-53 39-89 (269)
9 cd08888 SRPBCC_PITPNA-B_like L 92.1 0.21 4.6E-06 39.4 3.9 46 7-53 37-87 (258)
10 cd08890 SRPBCC_PITPNC1_like Li 90.1 0.43 9.2E-06 37.5 3.8 52 7-60 37-94 (250)
11 cd08863 SRPBCC_DUF1857 DUF1857 58.3 27 0.00059 25.1 4.8 48 38-98 35-82 (141)
12 PF09129 Chol_subst-bind: Chol 38.4 57 0.0012 26.5 4.1 39 83-121 208-250 (321)
13 PF11630 DUF3254: Protein of u 34.5 45 0.00099 22.7 2.6 35 87-121 53-87 (100)
14 cd08889 SRPBCC_PITPNM1-2_like 32.6 88 0.0019 24.9 4.3 22 98-119 196-217 (260)
15 cd08904 START_STARD6-like Lipi 29.0 1.4E+02 0.003 22.5 4.8 34 81-114 154-187 (204)
16 cd08888 SRPBCC_PITPNA-B_like L 27.9 1.3E+02 0.0028 23.9 4.5 23 99-121 196-218 (258)
17 KOG2760|consensus 25.6 3E+02 0.0064 23.5 6.4 27 2-28 49-79 (432)
18 cd08902 START_STARD4-like Lipi 23.6 2.1E+02 0.0046 21.8 4.9 37 80-116 151-187 (202)
19 cd05849 Ig1_Contactin-1 First 23.5 1.3E+02 0.0029 19.1 3.4 57 45-101 36-92 (93)
20 PF08982 DUF1857: Domain of un 22.1 3.1E+02 0.0066 19.7 5.4 40 37-85 35-74 (149)
21 PF15169 DUF4564: Domain of un 20.7 78 0.0017 23.9 2.0 19 50-68 67-85 (187)
22 cd07815 SRPBCC_PITP Lipid-bind 20.5 1.2E+02 0.0027 23.9 3.2 24 98-121 188-211 (251)
23 cd08914 START_STARD15-like Lip 20.2 4.2E+02 0.0091 20.6 9.4 77 47-123 141-236 (236)
No 1
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=100.00 E-value=1.3e-48 Score=284.76 Aligned_cols=125 Identities=35% Similarity=0.639 Sum_probs=121.1
Q ss_pred CCcceeeeeEEeeEe-eCCEEEEEEEEeeccChhHHhHHhhcCCceEEEEEEEEEeCCCCeEEEEEEeeeccceEEEEEE
Q psy14446 1 MNTAVKGIDVIDRKV-ENGILKSHRLISSQWGLPNWARSVVGSTNIFYASERSEVNPITRQMTLETTNLTYGHVIAVDER 79 (125)
Q Consensus 1 ~~~hV~~~Dvl~r~v-~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~~E~S~vD~~~k~l~~~s~Nls~~~~~~v~E~ 79 (125)
++|||+++|||+|++ ++|+|+|+||+.+++++|+|+++|+|....+|++|+|+|||++|+|+++|+|+||++++.|+|+
T Consensus 15 ~~~hVl~~Dvl~r~vd~~g~l~t~Rl~~~~~~~P~w~~kl~g~~~~~~~~E~S~vD~~~k~l~~~t~Nls~~~~~~v~E~ 94 (157)
T PF04707_consen 15 YSPHVLSVDVLDREVDPDGKLHTKRLITKKNNLPRWLKKLIGVDSECYIIEESIVDPKNKTLTTKTRNLSFSSFLSVEET 94 (157)
T ss_pred CCCceeEEEEEEEEEcCCCcEEEeeeeeeecCchHHHHHHhCcCceEEEEEEEEEECCCCEEEEEEEEcccCceeEEEEE
Confidence 589999999999999 8899999999999999999999999976779999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCccEEEEEEEEEEec--cchhHHHHHHHHHHhhhhcCC
Q psy14446 80 LCYQPHPEDNSKTLLKQEAVVTVRG--IPLSSYVENMLTSKISHNAGK 125 (125)
Q Consensus 80 ~~Y~~~p~np~~T~~~q~a~i~~~~--~gl~~~iE~~~~~rf~~Na~K 125 (125)
|+|.|||+||+||+|+|+|+|++.| +||+++||+|++++|++||.|
T Consensus 95 ~~Y~~~p~np~~T~~~q~a~i~~~~~~~~~~~~iE~~~~~~f~~na~k 142 (157)
T PF04707_consen 95 CVYKPHPDNPNWTLFKQEATISIKGSFSGFSSRIEKFSVSRFKSNAKK 142 (157)
T ss_pred EEEEECCCCCCcceEEEEEEEEEeCchhhHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999976 789999999999999999976
No 2
>KOG3336|consensus
Probab=100.00 E-value=1.8e-46 Score=274.06 Aligned_cols=125 Identities=50% Similarity=0.855 Sum_probs=121.7
Q ss_pred CCcceeeeeEEeeEe-eCCEEEEEEEEeeccChhHHhHHhhcCCceEEEEEEEEEeCCCCeEEEEEEeeeccceEEEEEE
Q psy14446 1 MNTAVKGIDVIDRKV-ENGILKSHRLISSQWGLPNWARSVVGSTNIFYASERSEVNPITRQMTLETTNLTYGHVIAVDER 79 (125)
Q Consensus 1 ~~~hV~~~Dvl~r~v-~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~~E~S~vD~~~k~l~~~s~Nls~~~~~~v~E~ 79 (125)
+++||+++|||+|.+ +.|+|+|+|||+..+++|+|+.+++|++..+|+.|.|+|||+.|+|+++|+||||.++++|+|+
T Consensus 29 ~~~hVi~VDvl~R~l~~~GkL~TeRlit~~~~~P~w~~~LiG~a~~~yv~E~SvVD~~~ksm~L~t~Nltf~~~l~vdE~ 108 (185)
T KOG3336|consen 29 INTHVIGVDVLDRKLDDSGKLHTERLITIHQGLPSWIHKLIGGANTCYVREVSVVDPKRKSMTLKTCNLTFSDFLSVDER 108 (185)
T ss_pred CCCceEEEeeeeeeeccCceEEEeeeeeeccCCcHHHHHHhCcccceEEEEEEEEcCccceEEEEecccccccceEeeeE
Confidence 589999999999999 8899999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCccEEEEEEEEEEec--cchhHHHHHHHHHHhhhhcCC
Q psy14446 80 LCYQPHPEDNSKTLLKQEAVVTVRG--IPLSSYVENMLTSKISHNAGK 125 (125)
Q Consensus 80 ~~Y~~~p~np~~T~~~q~a~i~~~~--~gl~~~iE~~~~~rf~~Na~K 125 (125)
.+|.|||+||+||+|+|+|.|++.| ..|++++|+|++++|++||.|
T Consensus 109 l~Y~PhP~dpskTv~~QEa~it~~~~~~~ls~~~E~~~~s~fs~NA~K 156 (185)
T KOG3336|consen 109 LTYSPHPEDPSKTVLKQEAIITIKGPLVSLSEYVEQWSASRFSQNASK 156 (185)
T ss_pred EEecCCCCCcccceeeeeeEEEEecchhhHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999998 479999999999999999987
No 3
>KOG3337|consensus
Probab=100.00 E-value=1.5e-37 Score=227.65 Aligned_cols=124 Identities=27% Similarity=0.433 Sum_probs=114.5
Q ss_pred CCcceeeeeEEeeEe-eCCEEEEEEEEeeccChhHHhHHhhcCCceEEEEEEEEEeCCCCeEEEEEEeeeccceEEEEEE
Q psy14446 1 MNTAVKGIDVIDRKV-ENGILKSHRLISSQWGLPNWARSVVGSTNIFYASERSEVNPITRQMTLETTNLTYGHVIAVDER 79 (125)
Q Consensus 1 ~~~hV~~~Dvl~r~v-~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~~E~S~vD~~~k~l~~~s~Nls~~~~~~v~E~ 79 (125)
|++||+++|||+|+| ++|.|+|+||+.|++++|+|+.+++.. ..+|++|+|+|||.+++|.++|+|++|.++|.|+|+
T Consensus 30 ySkHVlSeDvleR~Vt~dg~L~T~RLLvKqgRlPrWasrll~i-~~v~viE~SVvdp~nqtmkTyTrNldH~~lm~v~Er 108 (201)
T KOG3337|consen 30 YSKHVLSEDVLEREVTDDGTLVTKRLLVKQGRLPRWASRLLDI-QVVYVIEESVVDPVNQTMKTYTRNLDHARLMVVEER 108 (201)
T ss_pred cccccccHHHHhhhcCcccceehhhhHHhcCCCchhhhhhccc-ceeEEeeeeecCccccceeeeeeccccceeeEEEEE
Confidence 689999999999999 899999999999999999999999985 789999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCccEEEEEEEEEEeccchhHHHHHHHHHHhhhhcCC
Q psy14446 80 LCYQPHPEDNSKTLLKQEAVVTVRGIPLSSYVENMLTSKISHNAGK 125 (125)
Q Consensus 80 ~~Y~~~p~np~~T~~~q~a~i~~~~~gl~~~iE~~~~~rf~~Na~K 125 (125)
|+|..+.+||+|+.-..++.+++..+|+.+++++|++.||++|..|
T Consensus 109 c~y~~ssdns~ti~d~~~kfvss~~~G~~r~Vqe~sl~rFkenv~k 154 (201)
T KOG3337|consen 109 CVYCVSSDNSGTIEDRREKFVSSSLFGVSRAVQEFSLARFKENVTK 154 (201)
T ss_pred EEEEecCCCCcchhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999997766655555555557999999999999999999865
No 4
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.73 E-value=0.13 Score=37.18 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=69.6
Q ss_pred eeEe-eCCEEEEEEEEeeccChhHHhHHhhcCCceEEEEEEEEEeC-CCCeEEEEEEeeec-cceEEEEEEEEEeeCCCC
Q psy14446 12 DRKV-ENGILKSHRLISSQWGLPNWARSVVGSTNIFYASERSEVNP-ITRQMTLETTNLTY-GHVIAVDERLCYQPHPED 88 (125)
Q Consensus 12 ~r~v-~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~~E~S~vD~-~~k~l~~~s~Nls~-~~~~~v~E~~~Y~~~p~n 88 (125)
+-.+ .+|...+.+.-.-.-.+|.-+++++|. +-.+..++.+ .| .+...+... ..+. ..-+.+.=++++.|.
T Consensus 40 ~~~~~~~g~~v~~~~~v~~~~lP~~~~k~v~~-~l~v~~~e~w-~~~~~g~~~g~~-~~~~~G~P~~~~G~~~L~~~--- 113 (159)
T PF10698_consen 40 SFEVDGDGVRVTVRQTVPADKLPSAARKFVGG-DLRVTRTETW-TPLDDGRRTGTF-TVSIPGAPVSISGTMRLRPD--- 113 (159)
T ss_pred EEEEcCCeEEEEEEEecChhhCCHHHHHhcCC-CeEEEEEEEE-ecCCCCeEEEEE-EEEecCceEEEEEEEEEecC---
Confidence 3444 556433333333334899999999987 5556666776 65 344433322 2332 566777778888884
Q ss_pred CCccEEEEEEEEEEeccchhHHHHHHHHHHhhh
Q psy14446 89 NSKTLLKQEAVVTVRGIPLSSYVENMLTSKISH 121 (125)
Q Consensus 89 p~~T~~~q~a~i~~~~~gl~~~iE~~~~~rf~~ 121 (125)
++.|.+.-++.++++-..++.+||++..+...+
T Consensus 114 ~~gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~ 146 (159)
T PF10698_consen 114 GGGTRLTVEGEVKVKVPLVGGKIEKAVAENLRK 146 (159)
T ss_pred CCCEEEEEEEEEEEEEccccHHHHHHHHHHHHH
Confidence 468999999999999777789999998876654
No 5
>PF02121 IP_trans: Phosphatidylinositol transfer protein; InterPro: IPR001666 Phosphatidylinositol transfer protein (PITP) is a ubiquitous cytosolic protein, thought to be involved in transport of phospholipids from their site of synthesis in the endoplasmic reticulum and Golgi to other cell membranes []. More recently, PITP has been shown to be an essential component of the polyphosphoinositide synthesis machinery and is hence required for proper signalling by epidermal growth factor and f-Met-Leu-Phe, as well as for exocytosis. The role of PITP in polyphosphoinositide synthesis may also explain its involvement in intracellular vesicular traffic [].; GO: 0006810 transport, 0005622 intracellular; PDB: 1T27_A 1KCM_A 2A1L_A 1UW5_C.
Probab=96.04 E-value=0.033 Score=43.80 Aligned_cols=74 Identities=20% Similarity=0.371 Sum_probs=51.0
Q ss_pred eeeEEeeEe-e---CCE-EEEEEEEeeccChhHHhHHhhcCCceEEEEEEEEE-eCCCCeEEEEEEeeeccceEEEEEEE
Q psy14446 7 GIDVIDRKV-E---NGI-LKSHRLISSQWGLPNWARSVVGSTNIFYASERSEV-NPITRQMTLETTNLTYGHVIAVDERL 80 (125)
Q Consensus 7 ~~Dvl~r~v-~---~g~-L~t~Rli~~~~~~P~w~~kl~g~~~~~~~~E~S~v-D~~~k~l~~~s~Nls~~~~~~v~E~~ 80 (125)
+|.||...- + +|+ .+|++++.....+|+|++.+++. ...++.|+|+- .|-.++. ++.+ -+.+|.-..|+
T Consensus 39 GVEvl~Nep~~~~~g~~GqYT~K~y~l~sklP~~ir~l~P~-~~l~v~E~aWNaYPy~~T~--~t~~-~~~kF~i~IET- 113 (254)
T PF02121_consen 39 GVEVLKNEPYEDEPGGKGQYTHKIYHLASKLPSWIRALLPK-GALYVHEKAWNAYPYCKTV--YTNP-YMDKFSIKIET- 113 (254)
T ss_dssp EEEEEEEEEEE-TTS-EEEEEEEEEEETTTS-HHHHTTSTT-TTTEEEEEEEEETTEEEEE--EEET-TTGGEEEEEEE-
T ss_pred ceEEEEecccccCCCCceeeEEEEEEecccChHHHHHhCCC-ceEEEEEEEecccceEEEE--EecC-CCCceEEEEEE-
Confidence 567776554 2 333 79999999999999999999987 55689999986 4666654 3333 33777777777
Q ss_pred EEeeC
Q psy14446 81 CYQPH 85 (125)
Q Consensus 81 ~Y~~~ 85 (125)
.|.|+
T Consensus 114 ~~~~d 118 (254)
T PF02121_consen 114 MHKPD 118 (254)
T ss_dssp EEESS
T ss_pred EEcCC
Confidence 44443
No 6
>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs). This subgroup includes an N-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class II phosphatidylinositol transfer protein (PITPs), PITPNM1/PITPalphaI/Nir2 (PYK2 N-terminal domain-interacting receptor2) and PITPNM2/PITPalphaII/Nir3), Drosophila RdgB, and related proteins. These are membrane associated multidomain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Ablation of the mouse gene en
Probab=93.12 E-value=0.78 Score=36.28 Aligned_cols=53 Identities=19% Similarity=0.455 Sum_probs=38.0
Q ss_pred eeeEEeeEe-eCC----EEEEEEEEeeccChhHHhHHhhcCCceEEEEEEEEEe-CCCCe
Q psy14446 7 GIDVIDRKV-ENG----ILKSHRLISSQWGLPNWARSVVGSTNIFYASERSEVN-PITRQ 60 (125)
Q Consensus 7 ~~Dvl~r~v-~~g----~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~~E~S~vD-~~~k~ 60 (125)
+|.||.-.- +++ --+|+.++.....+|+|++.+++. ...++.|+++=- |-.++
T Consensus 39 GVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~wl~~~~P~-~al~v~EkaWNaYPy~~T 97 (260)
T cd08889 39 GVEILENRPYTDGPGGSGQYTHKIYHIGSHIPGWFRAILPK-SALRVEEEAWNAYPYTRT 97 (260)
T ss_pred eEEEEeccccccCCCCcceeEEEEEEccccChHHHHHhCCC-cceEEehhHhCCCCceEE
Confidence 567777555 332 368999999999999999999976 445677776522 54444
No 7
>cd07815 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of the phosphatidylinositol transfer protein (PITP) family of lipid transfer proteins. This family of proteins includes Class 1 PITPs (PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator and related proteins), Class IIA PITPs (PITPNM1/PITPalphaI/Nir2, PITPNM2/PITPalphaII/Nir3, Drosophila RdgB, and related proteins), and Class IIB PITPs (PITPNC1/RdgBbeta and related proteins). The PITP family belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns
Probab=92.54 E-value=0.18 Score=39.64 Aligned_cols=53 Identities=21% Similarity=0.393 Sum_probs=38.2
Q ss_pred eeeEEeeEe-eCC----EEEEEEEEeeccChhHHhHHhhcCCceEEEEEEEEEe-CCCCe
Q psy14446 7 GIDVIDRKV-ENG----ILKSHRLISSQWGLPNWARSVVGSTNIFYASERSEVN-PITRQ 60 (125)
Q Consensus 7 ~~Dvl~r~v-~~g----~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~~E~S~vD-~~~k~ 60 (125)
+|.||.-.- +++ --+|+.++.....+|+|++.+++. ...++.|+++=- |-.++
T Consensus 37 GVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~w~~~~~P~-~al~v~EkaWNaYPy~~T 95 (251)
T cd07815 37 GVEVLKNEPYEDENGGKGQYTHKIYHLGSKLPSWLRALAPK-SALTIEEKSWNAYPYCKT 95 (251)
T ss_pred cEEEEeccCcccCCCCcceeEEEEEEccccchhHHHHhCCc-cceEEEhhhhCCCCceeE
Confidence 566776554 332 368999999999999999999987 456777877532 54444
No 8
>KOG3668|consensus
Probab=92.21 E-value=1.4 Score=34.82 Aligned_cols=46 Identities=22% Similarity=0.433 Sum_probs=34.4
Q ss_pred eeeEEeeEe-eCCE----EEEEEEEeeccChhHHhHHhhcCCceEEEEEEEE
Q psy14446 7 GIDVIDRKV-ENGI----LKSHRLISSQWGLPNWARSVVGSTNIFYASERSE 53 (125)
Q Consensus 7 ~~Dvl~r~v-~~g~----L~t~Rli~~~~~~P~w~~kl~g~~~~~~~~E~S~ 53 (125)
+|.||.-.- ++|. =+|+.+..++..+|+|++.+++. +...+.|+|+
T Consensus 39 GVEvl~nep~~dg~~g~GqyThKIyhl~sk~P~~~r~l~Pk-~al~v~EesW 89 (269)
T KOG3668|consen 39 GVEVLKNEPYTDGPGGSGQYTHKIYHLGSKVPAWLRSLLPK-GALIVHEESW 89 (269)
T ss_pred ceEEEecCCCcCCCCCccceEEEEEEecccchHHHHHhCCc-cceEEeeecc
Confidence 466666444 3332 58999999999999999999987 4567777774
No 9
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=92.12 E-value=0.21 Score=39.38 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=34.4
Q ss_pred eeeEEeeEe-eCC----EEEEEEEEeeccChhHHhHHhhcCCceEEEEEEEE
Q psy14446 7 GIDVIDRKV-ENG----ILKSHRLISSQWGLPNWARSVVGSTNIFYASERSE 53 (125)
Q Consensus 7 ~~Dvl~r~v-~~g----~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~~E~S~ 53 (125)
+|.||.-.- +++ --+|+.++.....+|+|++.+++. ...++.|+++
T Consensus 37 GVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~wir~~~P~-~al~v~EkaW 87 (258)
T cd08888 37 GIEVLVNEPYEKDDGEKGQYTHKIYHLQSKVPGFVRMLAPE-GSLEIHEKAW 87 (258)
T ss_pred cEEEEeccccccCCCCcceeEEEEEEccccchhHHHHhCCC-cceEEehhhh
Confidence 566776555 332 368999999999999999999976 4456777664
No 10
>cd08890 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs). This subgroup includes the N-terminal SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain of mammalian Class IIB phosphatidylinositol transfer protein (PITP), PITPNC1/RdgBbeta, and related proteins. These are metazoan proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Mammalian PITPNC1 contains an amino-terminal SRPBCC PITP-like domain and a short carboxyl-terminal domain. It is a cytoplasmic protein, and is ubiquitously
Probab=90.05 E-value=0.43 Score=37.54 Aligned_cols=52 Identities=29% Similarity=0.466 Sum_probs=36.2
Q ss_pred eeeEEeeEe-eCC----EEEEEEEEeeccChhHHhHHhhcCCceEEEEEEEEEe-CCCCe
Q psy14446 7 GIDVIDRKV-ENG----ILKSHRLISSQWGLPNWARSVVGSTNIFYASERSEVN-PITRQ 60 (125)
Q Consensus 7 ~~Dvl~r~v-~~g----~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~~E~S~vD-~~~k~ 60 (125)
+|.||.-.- +++ --+|+.++.....+|+|++.+++. . .++.|+++=- |-.++
T Consensus 37 GVEvl~Nep~~~~~~~~GqYT~K~~hl~sklP~w~r~~~P~-~-l~v~EkaWNaYPy~~T 94 (250)
T cd08890 37 GVEVVQNEPCEDPEHGNGQFTEKRVYLNSRLPSWARAVVPK-I-FYVTEKAWNYYPYTIT 94 (250)
T ss_pred cEEEEeccccccCCCCccceeEEEEEccccChhHHHHhCCc-c-eEEehhhhccCCceee
Confidence 567777555 332 247888888999999999999986 3 6777776532 44444
No 11
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=58.33 E-value=27 Score=25.10 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=35.6
Q ss_pred HhhcCCceEEEEEEEEEeCCCCeEEEEEEeeeccceEEEEEEEEEeeCCCCCCccEEEEEE
Q psy14446 38 SVVGSTNIFYASERSEVNPITRQMTLETTNLTYGHVIAVDERLCYQPHPEDNSKTLLKQEA 98 (125)
Q Consensus 38 kl~g~~~~~~~~E~S~vD~~~k~l~~~s~Nls~~~~~~v~E~~~Y~~~p~np~~T~~~q~a 98 (125)
.|+.+.+.|-++|+|- +.-+|=+.|.+ ..+.|.|++.|. .+..|.|.+
T Consensus 35 ~Fvp~i~~c~Vl~e~~--------~~l~Rel~f~~-~~v~e~vt~~~~----~~v~f~~~~ 82 (141)
T cd08863 35 LFVPGLDRCEVLSESG--------TVLERELTFGP-AKIRETVTLEPP----SRVHFLQAD 82 (141)
T ss_pred hcccccceEEEEecCC--------CEEEEEEEECC-ceEEEEEEecCC----cEEEEEecC
Confidence 3444456778888882 24468888888 689999999874 688888877
No 12
>PF09129 Chol_subst-bind: Cholesterol oxidase, substrate-binding; InterPro: IPR015213 The substrate-binding domain found in cholesterol oxidase is composed of an eight-stranded mixed beta-pleated sheet and six alpha-helices. This domain is positioned over the isoalloxazine ring system of the FAD cofactor bound by the FAD-binding domain (IPR006094 from INTERPRO) and forms the roof of the active site cavity, allowing for catalysis of oxidation and isomerisation of cholesterol to cholest-4-en-3-one []. ; PDB: 3JS8_A 1I19_B 2I0K_A.
Probab=38.37 E-value=57 Score=26.51 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=22.4
Q ss_pred eeCCCCCCccEEEEEEEEEEeccc----hhHHHHHHHHHHhhh
Q psy14446 83 QPHPEDNSKTLLKQEAVVTVRGIP----LSSYVENMLTSKISH 121 (125)
Q Consensus 83 ~~~p~np~~T~~~q~a~i~~~~~g----l~~~iE~~~~~rf~~ 121 (125)
+|.|+.|+|-..---=.+++.|-. |=+-||+|+.+.|.-
T Consensus 208 rPrpDhpeWDvAiWldvLtlPGTP~a~~Fyre~EqWm~~~y~g 250 (321)
T PF09129_consen 208 RPRPDHPEWDVAIWLDVLTLPGTPGANAFYREMEQWMFSNYSG 250 (321)
T ss_dssp ---TT-TT--EEEEEEEEE-TT-TTHHHHHHHHHHHHHHHSBT
T ss_pred CCCCCCCCcceEEEEeeccCCCCccHHHHHHHHHHHHHhhcCC
Confidence 688889998765544444444432 778999999999864
No 13
>PF11630 DUF3254: Protein of unknown function (DUF3254); InterPro: IPR024509 Anti-lipopolysaccharide factor binds to bacterial LPS and may specifically inhibit the LPS-mediated activation of the hemolymph coagulation. It has a strong antibacterial effect, especially on the growth of Gram-negative bacteria [,]. This entry also includes the antibacterial protein Scygonadin, which has antibacterial activity against the Gram-positive bacterium Micrococcus luteus [].; PDB: 2JOB_A.
Probab=34.51 E-value=45 Score=22.70 Aligned_cols=35 Identities=9% Similarity=-0.008 Sum_probs=22.5
Q ss_pred CCCCccEEEEEEEEEEeccchhHHHHHHHHHHhhh
Q psy14446 87 EDNSKTLLKQEAVVTVRGIPLSSYVENMLTSKISH 121 (125)
Q Consensus 87 ~np~~T~~~q~a~i~~~~~gl~~~iE~~~~~rf~~ 121 (125)
-.|+||.++-++.=++..-.+++.+.+|...-+.+
T Consensus 53 wCPGWT~i~Ges~trs~sg~~~~a~rDFv~kA~~~ 87 (100)
T PF11630_consen 53 WCPGWTPIRGESRTRSRSGVVRKATRDFVRKAFQA 87 (100)
T ss_dssp E-BTTBS-EEEEEES-HHHHHHHHHHHHHHHHHHH
T ss_pred EcCCccceeccccccCCcchhhHHHHHHHHHHHHc
Confidence 35899999999887776544667777776655443
No 14
>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs). This subgroup includes an N-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class II phosphatidylinositol transfer protein (PITPs), PITPNM1/PITPalphaI/Nir2 (PYK2 N-terminal domain-interacting receptor2) and PITPNM2/PITPalphaII/Nir3), Drosophila RdgB, and related proteins. These are membrane associated multidomain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Ablation of the mouse gene en
Probab=32.55 E-value=88 Score=24.85 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=17.0
Q ss_pred EEEEEeccchhHHHHHHHHHHh
Q psy14446 98 AVVTVRGIPLSSYVENMLTSKI 119 (125)
Q Consensus 98 a~i~~~~~gl~~~iE~~~~~rf 119 (125)
.++....|||++++|+|..+.+
T Consensus 196 v~v~f~~wG~q~rvE~fI~~~~ 217 (260)
T cd08889 196 CKVEFRYWGMQTKIERFIHDVA 217 (260)
T ss_pred EEEEEeeecchHHHHHHHHHhh
Confidence 3445556899999999988766
No 15
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=28.99 E-value=1.4e+02 Score=22.50 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=23.3
Q ss_pred EEeeCCCCCCccEEEEEEEEEEeccchhHHHHHH
Q psy14446 81 CYQPHPEDNSKTLLKQEAVVTVRGIPLSSYVENM 114 (125)
Q Consensus 81 ~Y~~~p~np~~T~~~q~a~i~~~~~gl~~~iE~~ 114 (125)
...|.|++|+.|.|+--.....+|+==+..|+++
T Consensus 154 ~i~pl~~~p~~t~l~~~~~~DlkG~lP~~vv~~~ 187 (204)
T cd08904 154 VCSPLPENPAYSKLVMFVQPELRGNLSRSVIEKT 187 (204)
T ss_pred EEEECCCCCCceEEEEEEEeCCCCCCCHHHHHHH
Confidence 4568888888888888888877775333444444
No 16
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=27.88 E-value=1.3e+02 Score=23.91 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=17.3
Q ss_pred EEEEeccchhHHHHHHHHHHhhh
Q psy14446 99 VVTVRGIPLSSYVENMLTSKISH 121 (125)
Q Consensus 99 ~i~~~~~gl~~~iE~~~~~rf~~ 121 (125)
++....|||.+++|+|..+.++.
T Consensus 196 ~v~f~~wG~q~rvE~fI~~~~r~ 218 (258)
T cd08888 196 TVEFKWWGLQNKVENFIQKQERR 218 (258)
T ss_pred EEEEeeecccHHHHHHHHHHHHH
Confidence 44445689999999999876543
No 17
>KOG2760|consensus
Probab=25.61 E-value=3e+02 Score=23.47 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=19.1
Q ss_pred CcceeeeeEEeeEe--eCCE--EEEEEEEee
Q psy14446 2 NTAVKGIDVIDRKV--ENGI--LKSHRLISS 28 (125)
Q Consensus 2 ~~hV~~~Dvl~r~v--~~g~--L~t~Rli~~ 28 (125)
+.||.-+|=-.+.+ ++|. |+|+|+|..
T Consensus 49 ~~~I~~~D~~~k~~~~~dg~~vltt~Rliw~ 79 (432)
T KOG2760|consen 49 SQRIIIYDGDKKTTKFDDGTLVLTTHRLIWR 79 (432)
T ss_pred ecceEEecCCCccccccchhhhhhhceeeec
Confidence 35667677666755 7774 889999864
No 18
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=23.62 E-value=2.1e+02 Score=21.80 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=27.4
Q ss_pred EEEeeCCCCCCccEEEEEEEEEEeccchhHHHHHHHH
Q psy14446 80 LCYQPHPEDNSKTLLKQEAVVTVRGIPLSSYVENMLT 116 (125)
Q Consensus 80 ~~Y~~~p~np~~T~~~q~a~i~~~~~gl~~~iE~~~~ 116 (125)
+...|-|++|+.|.|+--.....+|+--++.|++++.
T Consensus 151 ~i~~Pl~~~p~k~~~t~~lq~DLkG~LPqsiIdq~~~ 187 (202)
T cd08902 151 WFCVPLKDNPSHSLLTGYIQTDLRGMLPQSAVDTAMA 187 (202)
T ss_pred EEEEECCCCCCceEEEEEEEecCCCCccHHHHHHHhh
Confidence 3567888999999988777777777655666666654
No 19
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=23.49 E-value=1.3e+02 Score=19.11 Aligned_cols=57 Identities=9% Similarity=0.058 Sum_probs=33.6
Q ss_pred eEEEEEEEEEeCCCCeEEEEEEeeeccceEEEEEEEEEeeCCCCCCccEEEEEEEEE
Q psy14446 45 IFYASERSEVNPITRQMTLETTNLTYGHVIAVDERLCYQPHPEDNSKTLLKQEAVVT 101 (125)
Q Consensus 45 ~~~~~E~S~vD~~~k~l~~~s~Nls~~~~~~v~E~~~Y~~~p~np~~T~~~q~a~i~ 101 (125)
..|..+...+++....+.+...+|...+....+..-.|.-...|+--+...+.|.++
T Consensus 36 i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 36 YKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred EEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 346555555665555555555555554433345666677777777667777766653
No 20
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=22.08 E-value=3.1e+02 Score=19.67 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=25.3
Q ss_pred HHhhcCCceEEEEEEEEEeCCCCeEEEEEEeeeccceEEEEEEEEEeeC
Q psy14446 37 RSVVGSTNIFYASERSEVNPITRQMTLETTNLTYGHVIAVDERLCYQPH 85 (125)
Q Consensus 37 ~kl~g~~~~~~~~E~S~vD~~~k~l~~~s~Nls~~~~~~v~E~~~Y~~~ 85 (125)
+.|+.....|-++|++ ...+ .|.+.|.+ ..|.|+|++.|.
T Consensus 35 ~~Fvp~i~~c~Vl~e~-----~~~~---~R~v~fg~-~~v~E~v~~~~~ 74 (149)
T PF08982_consen 35 QLFVPGIDSCEVLSES-----DTVL---TREVTFGG-ATVRERVTLYPP 74 (149)
T ss_dssp GGT-TT--EEEEEEE------SSEE---EEEEEETT-EEEEEEEEEETT
T ss_pred hhCccccCeEEEEecC-----CCeE---EEEEEECC-cEEEEEEEEeCC
Confidence 3455555778888888 3333 77788855 489999988864
No 21
>PF15169 DUF4564: Domain of unknown function (DUF4564)
Probab=20.71 E-value=78 Score=23.94 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=17.9
Q ss_pred EEEEEeCCCCeEEEEEEee
Q psy14446 50 ERSEVNPITRQMTLETTNL 68 (125)
Q Consensus 50 E~S~vD~~~k~l~~~s~Nl 68 (125)
|+.++|..++++++++.|+
T Consensus 67 ee~iFdK~kg~V~lk~~nl 85 (187)
T PF15169_consen 67 EEAIFDKSKGKVTLKYFNL 85 (187)
T ss_pred hheeEeccCCEEEEEeeeH
Confidence 6899999999999999997
No 22
>cd07815 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of the phosphatidylinositol transfer protein (PITP) family of lipid transfer proteins. This family of proteins includes Class 1 PITPs (PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator and related proteins), Class IIA PITPs (PITPNM1/PITPalphaI/Nir2, PITPNM2/PITPalphaII/Nir3, Drosophila RdgB, and related proteins), and Class IIB PITPs (PITPNC1/RdgBbeta and related proteins). The PITP family belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns
Probab=20.52 E-value=1.2e+02 Score=23.89 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=18.1
Q ss_pred EEEEEeccchhHHHHHHHHHHhhh
Q psy14446 98 AVVTVRGIPLSSYVENMLTSKISH 121 (125)
Q Consensus 98 a~i~~~~~gl~~~iE~~~~~rf~~ 121 (125)
.++....|||++++|+|..+.++.
T Consensus 188 v~v~f~~wG~q~rvE~~I~~~~r~ 211 (251)
T cd07815 188 VTVDFPYWGLQNKVENFIQKVERD 211 (251)
T ss_pred EEEEeeeecccHHHHHHHHHHHHH
Confidence 344555689999999999877643
No 23
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=20.23 E-value=4.2e+02 Score=20.58 Aligned_cols=77 Identities=12% Similarity=0.061 Sum_probs=51.2
Q ss_pred EEEEEEEEeCC-CC-eEEEEEEeeec------cceEEEEE-EEEEeeCCCCCCccEEEEEEEEEEe--------ccchhH
Q psy14446 47 YASERSEVNPI-TR-QMTLETTNLTY------GHVIAVDE-RLCYQPHPEDNSKTLLKQEAVVTVR--------GIPLSS 109 (125)
Q Consensus 47 ~~~E~S~vD~~-~k-~l~~~s~Nls~------~~~~~v~E-~~~Y~~~p~np~~T~~~q~a~i~~~--------~~gl~~ 109 (125)
+++-.|..++. .+ .+.+..+-+.+ .+++.++. -.-|.-.|..++.|.++-.+.++=. ..|+++
T Consensus 141 ~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~dPg~lp~~~~n~~~~~~ 220 (236)
T cd08914 141 LVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQISASILPYFAGNLGGWSK 220 (236)
T ss_pred EEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcCCccchheEEecchhhh
Confidence 44446665544 44 37666666666 78898888 5556666666788888888877542 126888
Q ss_pred HHHHHHH--HHhhhhc
Q psy14446 110 YVENMLT--SKISHNA 123 (125)
Q Consensus 110 ~iE~~~~--~rf~~Na 123 (125)
-||.... .+|-.||
T Consensus 221 ~~~~~~~~~~~~~~~~ 236 (236)
T cd08914 221 SIEETAASCIQFLENA 236 (236)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8887765 4555543
Done!