Query psy14446
Match_columns 125
No_of_seqs 106 out of 414
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 20:04:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kcm_A PITP alpha, phosphatidy 95.3 0.14 4.7E-06 39.6 9.4 75 7-85 38-118 (270)
2 2ffs_A Hypothetical protein PA 63.5 20 0.00068 25.2 5.9 49 37-98 37-85 (157)
3 2job_A Antilipopolysaccharide 46.9 11 0.00038 24.8 2.1 35 88-122 55-89 (102)
4 3qsz_A STAR-related lipid tran 42.7 76 0.0026 21.5 10.1 89 2-104 56-151 (189)
5 2l93_A DNA-binding protein H-N 32.7 2.9 0.0001 24.6 -2.2 17 27-43 20-39 (55)
6 1hnr_A H-NS; histone-like prot 29.4 4.8 0.00016 22.8 -1.6 17 27-43 20-39 (47)
7 1ln1_A PC-TP, phosphatidylchol 21.3 2E+02 0.0069 19.6 11.5 92 2-104 82-181 (214)
8 3oqg_A HPY188I; endonuclease-D 19.2 1.3E+02 0.0043 20.8 3.7 45 78-125 128-172 (180)
9 1kcm_A PITP alpha, phosphatidy 17.5 1.1E+02 0.0037 23.4 3.3 24 97-120 195-218 (270)
10 2lev_A LER; transcription regu 16.6 50 0.0017 19.3 1.0 14 27-40 27-40 (57)
No 1
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A*
Probab=95.30 E-value=0.14 Score=39.57 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=50.6
Q ss_pred eeeEEeeEe--e-CC-E-EEEEEEEeeccChhHHhHHhhcCCceEEEEEEEEEeCCCCeEEEEEEeeec-cceEEEEEEE
Q psy14446 7 GIDVIDRKV--E-NG-I-LKSHRLISSQWGLPNWARSVVGSTNIFYASERSEVNPITRQMTLETTNLTY-GHVIAVDERL 80 (125)
Q Consensus 7 ~~Dvl~r~v--~-~g-~-L~t~Rli~~~~~~P~w~~kl~g~~~~~~~~E~S~vD~~~k~l~~~s~Nls~-~~~~~v~E~~ 80 (125)
+|.||.-.- . +| + -+|++++.....+|+|++.+++. +..++.|+++ +.---+.+.+|.+. + .+|.-..|+
T Consensus 38 GVEvl~Nepy~~~~g~~GqYT~Kiyhl~sklP~wi~~~~P~-~al~v~EkaW-NayPy~~T~yt~~~-~~~kF~i~IET- 113 (270)
T 1kcm_A 38 GVEVLVNEPYEKDDGEKGQYTHKIYHLQSKVPTFVRMLAPE-GALNIHEKAW-NAYPYCRTVITNEY-MKEDFLIKIET- 113 (270)
T ss_dssp TEEEEEEEEEECTTSCEEEEEEEEEECGGGSCHHHHTTSCT-TTTEEEEEEE-EETTEEEEEEEETT-TGGGEEEEEEE-
T ss_pred eEEEEeccccccCCCCccceEEEEEEccccChHHHHHhCCc-cceEEEeehh-ccCcceeeEecCCC-cCcceEEEEEE-
Confidence 466776554 2 33 3 79999999999999999999987 4568888886 33334444556443 3 357667776
Q ss_pred EEeeC
Q psy14446 81 CYQPH 85 (125)
Q Consensus 81 ~Y~~~ 85 (125)
.|.|+
T Consensus 114 ~h~~d 118 (270)
T 1kcm_A 114 WHKPD 118 (270)
T ss_dssp EEESS
T ss_pred EEcCC
Confidence 55444
No 2
>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7
Probab=63.49 E-value=20 Score=25.21 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=37.2
Q ss_pred HHhhcCCceEEEEEEEEEeCCCCeEEEEEEeeeccceEEEEEEEEEeeCCCCCCccEEEEEE
Q psy14446 37 RSVVGSTNIFYASERSEVNPITRQMTLETTNLTYGHVIAVDERLCYQPHPEDNSKTLLKQEA 98 (125)
Q Consensus 37 ~kl~g~~~~~~~~E~S~vD~~~k~l~~~s~Nls~~~~~~v~E~~~Y~~~p~np~~T~~~q~a 98 (125)
+.|+.+.+.|-+++++ | . .-.|.+.|... .+.|+|++.|. .+..|.+.+
T Consensus 37 ~~Fvp~i~~c~Vlse~--~---~---~~~R~l~fg~~-~i~e~vtl~~~----~~v~f~~~~ 85 (157)
T 2ffs_A 37 QYFVVGLERFEILVDD--G---D---RLHRRLYLPGL-VVEDEVVLKAP----DSAHYSIKP 85 (157)
T ss_dssp GGTCTTCCEEEEEEEC--S---S---EEEEEEEETTE-EEEEEEEEETT----TEEEEEECC
T ss_pred hhcccccCeEEEEecC--C---C---eEEEEEEECCC-ccceEEEEcCC----cEEEEEccc
Confidence 3455556788899987 2 1 45799999988 89999999986 577777765
No 3
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=46.92 E-value=11 Score=24.77 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=26.9
Q ss_pred CCCccEEEEEEEEEEeccchhHHHHHHHHHHhhhh
Q psy14446 88 DNSKTLLKQEAVVTVRGIPLSSYVENMLTSKISHN 122 (125)
Q Consensus 88 np~~T~~~q~a~i~~~~~gl~~~iE~~~~~rf~~N 122 (125)
.|+||-++-++.-+|..--+++.+++|...-|.+.
T Consensus 55 CPgWT~i~Ges~TrSrsgvv~~a~rDFV~KA~~~g 89 (102)
T 2job_A 55 CPGWTAIRGEASTRSQSGVAGKTAKDFVRKAFQKG 89 (102)
T ss_dssp CBTTBSCEEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCccceecccccccccchhhhHHHHHHHHHHHcC
Confidence 58999999999988875557788888877666543
No 4
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=42.68 E-value=76 Score=21.47 Aligned_cols=89 Identities=10% Similarity=0.053 Sum_probs=47.9
Q ss_pred CcceeeeeEEeeEeeCCEEEEEEEEeeccChhHHhHHhhcCCceEEEEEEEEEeCCCCeEEEEEEeeec------cceEE
Q psy14446 2 NTAVKGIDVIDRKVENGILKSHRLISSQWGLPNWARSVVGSTNIFYASERSEVNPITRQMTLETTNLTY------GHVIA 75 (125)
Q Consensus 2 ~~hV~~~Dvl~r~v~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~~E~S~vD~~~k~l~~~s~Nls~------~~~~~ 75 (125)
.+.+.+..+|++ .++.. ++......| |. + .+.-|+.-.+..+..++.+.+.... .+ .+++.
T Consensus 56 ~~~~~~~~vle~--~~~~~----i~y~~~~~p-~p---~--~~RD~v~~~~~~~~~~g~~~i~~~~-~~~~~P~~~~~VR 122 (189)
T 3qsz_A 56 MPDVAASELLKA--TDTEQ----YHYLDNSAP-WP---V--SNRDGVYHFTYEKAGDGAITVRVEA-VPDYLPLRKGKVR 122 (189)
T ss_dssp STTEEEEEEEEE--CSSEE----EEEEEECCS-SS---C--CCEEEEEEEEEEECTTSCEEEEEEE-CTTSSCCCTTSEE
T ss_pred HHhcCEEEEEee--cCCce----EEEEEeecC-CC---c--CCcceEEEEEEEECCCCeEEEEEEc-CCCccCCCCCeEE
Confidence 577888999998 44432 222233455 31 2 2323444444444333455443332 34 34444
Q ss_pred EEE-EEEEeeCCCCCCccEEEEEEEEEEec
Q psy14446 76 VDE-RLCYQPHPEDNSKTLLKQEAVVTVRG 104 (125)
Q Consensus 76 v~E-~~~Y~~~p~np~~T~~~q~a~i~~~~ 104 (125)
+.- .+.|.-.| +++.|.++-.+.+.-.|
T Consensus 123 ~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G 151 (189)
T 3qsz_A 123 IPRAKGQWTLVP-DADGVDVTYQMHASPGG 151 (189)
T ss_dssp CCCEEEEEEEEE-CSSSEEEEEEEEECSCS
T ss_pred eeEeeEEEEEEE-CCCeEEEEEEEEeCCCC
Confidence 442 25564444 56789888888887775
No 5
>2l93_A DNA-binding protein H-NS; at HOOK; NMR {Salmonella typhimurium}
Probab=32.68 E-value=2.9 Score=24.58 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=13.8
Q ss_pred eeccChhHHhHHhh---cCC
Q psy14446 27 SSQWGLPNWARSVV---GST 43 (125)
Q Consensus 27 ~~~~~~P~w~~kl~---g~~ 43 (125)
+-+++.|+|++..+ |.+
T Consensus 20 tGrGR~P~wi~~al~~~Gks 39 (55)
T 2l93_A 20 TGQGRTPAVIKKAMEEQGKQ 39 (55)
T ss_dssp CSCSSCCHHHHHHHHHSCCC
T ss_pred cCCCCCcHHHHHHHHHcCCC
Confidence 56788999999988 654
No 6
>1hnr_A H-NS; histone-like protein H1, DNA-binding protein; NMR {Escherichia coli} SCOP: a.155.1.1 PDB: 1hns_A
Probab=29.36 E-value=4.8 Score=22.81 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=13.2
Q ss_pred eeccChhHHhHHhh---cCC
Q psy14446 27 SSQWGLPNWARSVV---GST 43 (125)
Q Consensus 27 ~~~~~~P~w~~kl~---g~~ 43 (125)
+-+++.|.|++..+ |.+
T Consensus 20 tGrGr~P~wi~~al~~~G~~ 39 (47)
T 1hnr_A 20 TGQGRTPAVIKKAMDEQGKS 39 (47)
T ss_dssp CTTSSCCSHHHHHHHHTCCS
T ss_pred cCCCCCCHHHHHHHHHcCCC
Confidence 45678999999887 654
No 7
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=21.30 E-value=2e+02 Score=19.57 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=49.5
Q ss_pred CcceeeeeEEeeEeeCCEEEEEEEEeeccChhHHhHHhhcCCceEEEEEEEEEeCCCCe-EEEEEEeeec------cceE
Q psy14446 2 NTAVKGIDVIDRKVENGILKSHRLISSQWGLPNWARSVVGSTNIFYASERSEVNPITRQ-MTLETTNLTY------GHVI 74 (125)
Q Consensus 2 ~~hV~~~Dvl~r~v~~g~L~t~Rli~~~~~~P~w~~kl~g~~~~~~~~E~S~vD~~~k~-l~~~s~Nls~------~~~~ 74 (125)
.+++...++|++ +|. .++.....+| |. +...+.++......+|...+. ..+-++-++| .+++
T Consensus 82 d~~~~~~~vle~---~~~----~i~~~~~~~p-~p---~~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~V 150 (214)
T 1ln1_A 82 DQYVKELYEQEC---NGE----TVVYWEVKYP-FP---MSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVI 150 (214)
T ss_dssp CTTEEEEEEEEE---TTE----EEEEEEECCC-TT---SCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSE
T ss_pred HHHHhhEEEecc---CCC----EEEEEEEEcC-CC---CCCceEEEEEEEEecccCCCeEEEEEEecccCCCCCCCCCcE
Confidence 456777888765 552 1333334455 31 222233333322234444443 3444555555 4566
Q ss_pred EEE-EEEEEeeCCCCCCccEEEEEEEEEEec
Q psy14446 75 AVD-ERLCYQPHPEDNSKTLLKQEAVVTVRG 104 (125)
Q Consensus 75 ~v~-E~~~Y~~~p~np~~T~~~q~a~i~~~~ 104 (125)
.+. -.+.|.-.|.+++.|.++..+.+...|
T Consensus 151 R~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~G 181 (214)
T 1ln1_A 151 RVKQYKQSLAIESDGKKGSKVFMYYFDNPGG 181 (214)
T ss_dssp EECCEEEEEEEEECSSSSEEEEEEEEECCSS
T ss_pred EEEEEEEEEEEecCCCCceEEEEEEEECCCC
Confidence 665 334455555567889999888888875
No 8
>3oqg_A HPY188I; endonuclease-DNA complex, restriction enzyme, HPY188I, inter GIY-YIG nuclease, catalytic mechanism; HET: DNA; 1.75A {Helicobacter pylori} PDB: 3or3_A
Probab=19.25 E-value=1.3e+02 Score=20.80 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=34.7
Q ss_pred EEEEEeeCCCCCCccEEEEEEEEEEeccchhHHHHHHHHHHhhhhcCC
Q psy14446 78 ERLCYQPHPEDNSKTLLKQEAVVTVRGIPLSSYVENMLTSKISHNAGK 125 (125)
Q Consensus 78 E~~~Y~~~p~np~~T~~~q~a~i~~~~~gl~~~iE~~~~~rf~~Na~K 125 (125)
|..+|---|+-|..|+|-|.-. ..++-+.+.|+..+..|-.|-.|
T Consensus 128 ~v~vyaffp~~p~y~~fg~~~~---ds~~~sk~~enii~~~fik~h~k 172 (180)
T 3oqg_A 128 IVQVYAFFPEQPTYTLFGKTYQ---DSFSTSKRAENVILENFIKNHNK 172 (180)
T ss_dssp CEEEEEECCCCCEEEETTEEEE---SSSCHHHHHHHHHHHHHHHHHSS
T ss_pred EEEEEEecCCCCceeehhhhhc---ccCCchhhhhhhhHHHHHHHcCC
Confidence 6678899999998888876432 24667899999999999887654
No 9
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A*
Probab=17.48 E-value=1.1e+02 Score=23.36 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=18.0
Q ss_pred EEEEEEeccchhHHHHHHHHHHhh
Q psy14446 97 EAVVTVRGIPLSSYVENMLTSKIS 120 (125)
Q Consensus 97 ~a~i~~~~~gl~~~iE~~~~~rf~ 120 (125)
-.+|....|||.+++|+|..+..+
T Consensus 195 Lv~v~f~~wGlq~rvE~fI~~~~r 218 (270)
T 1kcm_A 195 LVTVKFKWWGLQNKVENFIHKQEK 218 (270)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHHH
T ss_pred EEEEEEeecCchHHHHHHHHHHHH
Confidence 345555679999999999876543
No 10
>2lev_A LER; transcription regulator-DNA complex, arginine-minor-groove recognition; HET: DNA; NMR {Escherichia coli}
Probab=16.60 E-value=50 Score=19.34 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=11.6
Q ss_pred eeccChhHHhHHhh
Q psy14446 27 SSQWGLPNWARSVV 40 (125)
Q Consensus 27 ~~~~~~P~w~~kl~ 40 (125)
+-+++.|.|++..+
T Consensus 27 tGrGR~P~Wi~~al 40 (57)
T 2lev_A 27 SGVGRQPRWLKEAL 40 (57)
T ss_dssp CSSSCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHH
Confidence 55788999999876
Done!