RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14446
         (125 letters)



>gnl|CDD|218219 pfam04707, PRELI, PRELI-like family.  This family includes a
           conserved region found in the PRELI protein and yeast
           YLR168C gene MSF1 product. The function of this protein
           is unknown, though it is thought to be involved in
           intra-mitochondrial protein sorting. This region is also
           found in a number of other eukaryotic proteins.
          Length = 157

 Score =  125 bits (316), Expect = 4e-38
 Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 3/128 (2%)

Query: 1   MNTAVKGIDVIDRKV-ENGILKSHRLISSQWGLPNWARSVVGSTNIFYASERSEVNPITR 59
            +  V  +DV++RKV ++G L + RL++ Q  LP W + ++G  +  Y  E S V+P  R
Sbjct: 15  YSPHVISVDVLERKVDDDGKLHTERLLTKQGRLPRWLKKLIGVADTVYVLEVSVVDPKKR 74

Query: 60  QMTLETTNLTYGHVIAVDERLCYQPHPEDNSKTLLKQEAVVTVRGI--PLSSYVENMLTS 117
            +TLET NLT+   ++VDER  Y PHPE+ + T   QEA ++V+G     SS VE     
Sbjct: 75  TLTLETRNLTFSSRLSVDERCTYTPHPENPNWTCFDQEASISVKGSFFGFSSKVEKWSLK 134

Query: 118 KISHNAGK 125
           + S NA K
Sbjct: 135 RFSQNAKK 142


>gnl|CDD|168162 PRK05665, PRK05665, amidotransferase; Provisional.
          Length = 240

 Score = 30.5 bits (69), Expect = 0.17
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 5/28 (17%)

Query: 77  DERLCYQPHPE---DNSKTLL--KQEAV 99
           D+ LC+Q HPE   D S+ LL  +QE +
Sbjct: 177 DQVLCFQGHPEFVHDYSRALLDLRQEHL 204


>gnl|CDD|176899 cd08890, SRPBCC_PITPNC1_like, Lipid-binding SRPBCC domain of
          mammalian PITPNC1,and related proteins (Class IIB
          PITPs).  This subgroup includes the N-terminal SRPBCC
          (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain of
          mammalian Class IIB phosphatidylinositol transfer
          protein (PITP), PITPNC1/RdgBbeta, and related proteins.
          These are metazoan proteins belonging to the PITP
          family of lipid transfer proteins, and to the SRPBCC
          domain superfamily of proteins that bind hydrophobic
          ligands. SRPBCC domains have a deep hydrophobic
          ligand-binding pocket. In vitro, PITPs bind
          phosphatidylinositol (PtdIns), as well as
          phosphatidylcholine (PtdCho) but with a lower affinity.
          They transfer these lipids from one membrane
          compartment to another. The cellular roles of PITPs
          include inositol lipid signaling, PtdIns metabolism,
          and membrane trafficking. Mammalian PITPNC1 contains an
          amino-terminal SRPBCC PITP-like domain and a short
          carboxyl-terminal domain. It is a cytoplasmic protein,
          and is ubiquitously expressed. It can transfer
          phosphatidylinositol (PtdIns) in vitro with a similar
          ability to other PITPs.
          Length = 250

 Score = 29.0 bits (65), Expect = 0.57
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 2/21 (9%)

Query: 32 LPNWARSVVGSTNIFYASERS 52
          LP+WAR+VV    IFY +E++
Sbjct: 67 LPSWARAVV--PKIFYVTEKA 85


>gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the
           elongation of the glucan chain of cellulose.  Family of
           proteins related to  Agrobacterium tumefaciens CelA and 
           Gluconacetobacter xylinus BscA. These proteins are
           involved in the elongation of the glucan chain of
           cellulose, an aggregate of unbranched polymers of
           beta-1,4-linked glucose residues. They are putative
           catalytic subunit of cellulose synthase, which is a
           glycosyltransferase using UDP-glucose as the substrate.
           The catalytic subunit is an integral membrane protein
           with 6 transmembrane segments and it is postulated that
           the protein is anchored in the membrane at the
           N-terminal end.
          Length = 234

 Score = 26.4 bits (59), Expect = 3.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 90  SKTLLKQEAVVTVRGIPLSSYVENMLTSKISHNAG 124
           S  ++++EA+  + G P  S  E++ TS   H  G
Sbjct: 163 SGAVVRREALDEIGGFPTDSVTEDLATSLRLHAKG 197


>gnl|CDD|177311 PHA01547, PHA01547, putative internal virion protein A.
          Length = 206

 Score = 25.8 bits (56), Expect = 6.6
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 8   IDVIDRKV-ENGILKSHRLISSQWGLPNWARSVVGST 43
              IDR+V E  +     L +  + L N  RS+    
Sbjct: 100 ALDIDREVGEALVQIDQNLDAQMYNLANQIRSIQAQA 136


>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional.
          Length = 471

 Score = 26.0 bits (57), Expect = 7.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 89  NSKTLLKQEAVVTVRGIPLSSYVENML 115
           N  TL    A +T RGIPL++   +ML
Sbjct: 321 NEGTLPACFARLTKRGIPLTALSVSML 347


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0725    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,007,555
Number of extensions: 493899
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 11
Length of query: 125
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 40
Effective length of database: 7,167,512
Effective search space: 286700480
Effective search space used: 286700480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.2 bits)