RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14448
(280 letters)
>gnl|CDD|216665 pfam01725, Ham1p_like, Ham1 family. This family consists of the
HAM1 protein and hypothetical archaeal bacterial and C.
elegans proteins. HAM1 controls 6-N-hydroxylaminopurine
(HAP) sensitivity and mutagenesis in S. cerevisiae
inosine triphosphate pyrophosphatase. The HAM1 protein
protects the cell from HAP, either on the level of
deoxynucleoside triphosphate or the DNA level by a yet
unidentified set of reactions.
Length = 181
Score = 180 bits (460), Expect = 4e-57
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 3/172 (1%)
Query: 97 KLQEFVQILGPNVP--FRMIHKNIDLPELQGEIDDLCKKKCERAMKSINDRVIVEDTCLC 154
KL+E ILG + H I++ E ++ K + A K++ V+ +D+ LC
Sbjct: 10 KLKEIKAILGDLGIEVIDLKHFPIEVEETGDTFEENALLKAKAAAKALGKPVLADDSGLC 69
Query: 155 FNALGGLPGPYVKWFLQKIGPFGLYKMLAGFIDKSAKAICTFAFGDRDGSVRLFRGEAQG 214
+AL G PG Y F + L ++L G D+SA +C A D DG V +F G +G
Sbjct: 70 VDALNGFPGVYSARFADTLNNEKLLELLEGVEDRSAYFVCVIALADPDGKVLVFEGIVEG 129
Query: 215 KIVK-PRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKLKDFF 265
+I + PRG +D F P G+ +T+ EM +E+KN++S+R KA KLK+F
Sbjct: 130 EISEEPRGEGGFGYDPIFIPPGYGKTFAEMSEEEKNKISHRGKALRKLKEFL 181
Score = 75.6 bits (187), Expect = 9e-17
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 18/106 (16%)
Query: 1 VIHKKIDLPELQGEIDDICKKKCEKAIKTINDRVIVEDTCLCFNALRGLPG-------DS 53
+ H I++ E ++ K + A K + V+ +D+ LC +AL G PG D+
Sbjct: 28 LKHFPIEVEETGDTFEENALLKAKAAAKALGKPVLADDSGLCVDALNGFPGVYSARFADT 87
Query: 54 QKNRFTRVTRKSCPFGLYKMLAGFIDKSAKAICTFAFGDRDGSKLQ 99
N L ++L G D+SA +C A D DG L
Sbjct: 88 LNNE-----------KLLELLEGVEDRSAYFVCVIALADPDGKVLV 122
>gnl|CDD|238285 cd00515, HAM1, NTPase/HAM1. This family consists of the HAM1
protein and pyrophosphate-releasing xanthosine/ inosine
triphosphatase. HAM1 protects the cell against
mutagenesis by the base analog 6-N-hydroxylaminopurine
(HAP) in E. Coli and S. cerevisiae. A Ham1-related
protein from Methanococcus jannaschii is a novel NTPase
that has been shown to hydrolyze nonstandard nucleotides
such as XTP to XMP and ITP to IMP, but not the standard
nucleotides, in the presence of Mg or Mn ions. The
enzyme exists as a homodimer. The HAM1 protein may be
acting as an NTPase by hydrolyzing the HAP triphosphate.
Length = 183
Score = 173 bits (440), Expect = 5e-54
Identities = 62/174 (35%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
Query: 97 KLQEFVQILGP-NVPFRMIHKNIDLPELQGEIDDLCKKKCERAMKSINDRVIVEDTCLCF 155
KL+EF +IL P + + ID+ E ++ K A +++ V+ +D+ LC
Sbjct: 10 KLKEFKEILAPFGIEVVSLKDIIDIEETGSTFEENALLKARAAAEALGLPVLADDSGLCV 69
Query: 156 NALGGLPGPYVKWFLQ----KIGPFGLYKMLAGFIDKSAKAICTFAFGDRDGSVRLFRGE 211
+AL G PG Y F L ++L G D+SA +C A D DG +F GE
Sbjct: 70 DALNGFPGVYSARFAGEHDDAENNEKLLELLEGDEDRSAYFVCVIALVDPDGEPLVFEGE 129
Query: 212 AQGKIV-KPRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKLKDF 264
+GKIV +PRG +D F P+G+ +T+ EM E+KN +S+R KA KLK+F
Sbjct: 130 VEGKIVTEPRGTGGFGYDPIFIPEGYGKTFAEMSPEEKNAISHRGKALRKLKEF 183
Score = 68.3 bits (168), Expect = 4e-14
Identities = 25/94 (26%), Positives = 39/94 (41%)
Query: 2 IHKKIDLPELQGEIDDICKKKCEKAIKTINDRVIVEDTCLCFNALRGLPGDSQKNRFTRV 61
+ ID+ E ++ K A + + V+ +D+ LC +AL G PG
Sbjct: 28 LKDIIDIEETGSTFEENALLKARAAAEALGLPVLADDSGLCVDALNGFPGVYSARFAGEH 87
Query: 62 TRKSCPFGLYKMLAGFIDKSAKAICTFAFGDRDG 95
L ++L G D+SA +C A D DG
Sbjct: 88 DDAENNEKLLELLEGDEDRSAYFVCVIALVDPDG 121
>gnl|CDD|223205 COG0127, COG0127, Xanthosine triphosphate pyrophosphatase
[Nucleotide transport and metabolism].
Length = 194
Score = 138 bits (351), Expect = 1e-40
Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 97 KLQEFVQILGPN----VPFRMIHKNIDLPELQGEIDDLCKKKCERAMKSINDRVIVEDTC 152
KL+E IL P + + I++ E ++ K A K+ VI +D+
Sbjct: 13 KLRELKSILAPGGIEIESLKELGVEIEVEETGLTFEENALLKARAAAKATGLPVIADDSG 72
Query: 153 LCFNALGGLPGPYVKWFLQ----KIGPFGLYKMLAGFIDKSAKAICTFAFGDRDGSVRLF 208
LC +AL G PG Y F IG L K+L G D+SA +C G +F
Sbjct: 73 LCVDALNGFPGVYSARFAGEADDTIGNEKLLKLLEGVPDRSAYFVCVIVLARDGGEPIVF 132
Query: 209 RGEAQGKIVK-PRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKLKDFF 265
GE +G+I + PRG +D F P+G+ +T+ E+ E+KN +S+R +A KLK++
Sbjct: 133 EGEVEGEIAREPRGEGGFGYDPIFIPEGYGKTFAELSTEEKNAISHRARALKKLKEYL 190
Score = 48.0 bits (115), Expect = 1e-06
Identities = 23/85 (27%), Positives = 33/85 (38%)
Query: 6 IDLPELQGEIDDICKKKCEKAIKTINDRVIVEDTCLCFNALRGLPGDSQKNRFTRVTRKS 65
I++ E ++ K A K VI +D+ LC +AL G PG
Sbjct: 38 IEVEETGLTFEENALLKARAAAKATGLPVIADDSGLCVDALNGFPGVYSARFAGEADDTI 97
Query: 66 CPFGLYKMLAGFIDKSAKAICTFAF 90
L K+L G D+SA +C
Sbjct: 98 GNEKLLKLLEGVPDRSAYFVCVIVL 122
>gnl|CDD|232795 TIGR00042, TIGR00042, non-canonical purine NTP pyrophosphatase,
RdgB/HAM1 family. Saccharomyces cerevisiae HAM1
protects against the mutagenic effects of the base
analog 6-N-hydroxylaminopurine, which can be a natural
product of monooxygenase activity on adenine.
Methanococcus jannaschii MJ0226 and E. coli RdgB are
also characterized as pyrophosphatases active against
non-standard purines NTPs. E. coli RdgB appears to act
by intercepting non-canonical deoxyribonucleotide
triphosphates from replication precursor pools. [DNA
metabolism, DNA replication, recombination, and repair].
Length = 184
Score = 122 bits (308), Expect = 2e-34
Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 10/175 (5%)
Query: 97 KLQEFVQILGPNVPFRMIHKNIDLPELQG----EIDDLCKKKCERAMKSINDRVIVEDTC 152
KL+E IL + ++ PE G E L K + A K +N VI ED+
Sbjct: 11 KLKEVQSILSDLGDNEIEQLDLGYPEETGLTFEENALL---KAKHAAKILNKPVIAEDSG 67
Query: 153 LCFNALGGLPGPYVKWFLQKI--GPFGLYKMLAGFIDKSAKAICTFAFGDRDGSVRLFRG 210
L +AL G PG Y + + K+L G ++ A +C + D +G +F G
Sbjct: 68 LFVDALNGFPGIYSARYQGTDIGNLEKILKLLEGVENRQAYFVCVIGYCDPNGEPLVFEG 127
Query: 211 EAQGKIV-KPRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKLKDF 264
+GKI +PRG +D F P +T+ E+ E+KN++S+R KA K K F
Sbjct: 128 IVKGKITREPRGTYGFGYDPIFIPPEEGKTFAELTTEEKNKISHRGKAFKKFKKF 182
Score = 53.5 bits (129), Expect = 9e-09
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 1 VIHKKIDLPELQGE-IDDICKKKCEKAIKTINDRVIVEDTCLCFNALRGLPGDSQKNRFT 59
+ + PE G ++ K + A K +N VI ED+ L +AL G PG R+
Sbjct: 27 IEQLDLGYPEETGLTFEENALLKAKHAAKILNKPVIAEDSGLFVDALNGFPGIYSA-RYQ 85
Query: 60 RVTRKSCPFGLYKMLAGFIDKSAKAICTFAFGDRDGSKL 98
+ + K+L G ++ A +C + D +G L
Sbjct: 86 GTDIGNLE-KILKLLEGVENRQAYFVCVIGYCDPNGEPL 123
>gnl|CDD|184834 PRK14821, PRK14821, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 184
Score = 100 bits (251), Expect = 7e-26
Identities = 56/182 (30%), Positives = 98/182 (53%), Gaps = 10/182 (5%)
Query: 88 FAFGDRDGSKLQEFVQILGPNVPFRMIHKNIDLPELQ-GEIDDLCKKKCERAMKSINDRV 146
FA G++ K++E IL P + + I+ PE+Q ++++ + +N V
Sbjct: 5 FATGNKG--KVEEAKIILKP-LGIEVEQIKIEYPEIQADTLEEVAAFGAKWVYNKLNRPV 61
Query: 147 IVEDTCLCFNALGGLPGPYVKWFLQKIGPFGLYKMLAGFIDKSA--KAICTFAFGDRDGS 204
IVED+ L AL G PGPY + + +G G+ K+L G ++ A K++ + G
Sbjct: 62 IVEDSGLFIEALNGFPGPYSAFVYKTLGNEGILKLLEGEENRRAYFKSVIGYC---DPGG 118
Query: 205 VRLFRGEAQGKIV-KPRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKLKD 263
+LF G +GKI + RG+ +D F P+G ++T+ EM E+KN++S+R +A + K+
Sbjct: 119 EKLFTGIVEGKIANEIRGKGGFGYDPIFIPEGEEKTFAEMTTEEKNKISHRKRAFDEFKE 178
Query: 264 FF 265
+
Sbjct: 179 WL 180
Score = 36.5 bits (85), Expect = 0.006
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 1 VIHKKIDLPELQ-GEIDDICKKKCEKAIKTINDRVIVEDTCLCFNALRGLPG 51
V KI+ PE+Q ++++ + +N VIVED+ L AL G PG
Sbjct: 27 VEQIKIEYPEIQADTLEEVAAFGAKWVYNKLNRPVIVEDSGLFIEALNGFPG 78
>gnl|CDD|234648 PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.
Length = 196
Score = 74.3 bits (184), Expect = 5e-16
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 16/130 (12%)
Query: 146 VIVEDTCLCFNALGGLPGPY-VKWFLQKIGPFG-----LYKMLA-----GFIDKSAKAIC 194
+ +D+ LC +ALGG PG Y ++ G K+L D+ A+ +C
Sbjct: 64 ALADDSGLCVDALGGAPGVYSARYA----GEGASDAANNEKLLEELKGVPDEDRRARFVC 119
Query: 195 TFAFGDRDGSVRLFRGEAQGKIV-KPRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSY 253
D + + G +G+I+ +PRG N +D F P G+ +T+ E+ E+KN +S+
Sbjct: 120 VLVLVRPDPTPLVAEGRWEGEILWEPRGENGFGYDPIFFPPGYGKTFAELTPEEKNAISH 179
Query: 254 RYKAALKLKD 263
R KA L +
Sbjct: 180 RGKALKLLLE 189
>gnl|CDD|238485 cd00985, Maf_Ham1, Maf_Ham1. Maf, a nucleotide binding protein, has
been implicated in inhibition of septum formation in
eukaryotes, bacteria and archaea. A Ham1-related protein
from Methanococcus jannaschii is a novel NTPase that has
been shown to hydrolyze nonstandard nucleotides, such as
hypoxanthine/xanthine NTP, but not standard nucleotides.
Length = 131
Score = 68.7 bits (169), Expect = 1e-14
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 20/127 (15%)
Query: 97 KLQEFVQILGPNVPFRMIHKNIDLPELQGE------IDDLCKKKCERAMKSINDR-VIVE 149
+L+E QI G + F ++ D+ E + +++L K + + D VI +
Sbjct: 10 RLEELKQIGG--IEFEVL--PSDIDETGLKGEPEDTVEELALLKARAVAERLPDAPVIAD 65
Query: 150 DTCLCFNALGGLPGPYVKWFLQKIGPFGLYKMLAGFIDKSAKAICTFAFGDRDGSVRLFR 209
DT L + G PG F + + +ML G ++A+ + A D DG + F
Sbjct: 66 DTGLVVD---GRPGGKPARFAEAL------EMLRGLSGRTAEFVTAVALVDPDGKIITFE 116
Query: 210 GEAQGKI 216
GE +GKI
Sbjct: 117 GETEGKI 123
Score = 42.9 bits (102), Expect = 2e-05
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 21/111 (18%)
Query: 1 VIHKKIDLPELQGE------IDDICKKKCEKAIKTINDR-VIVEDTCLCFNALRGLPGDS 53
D+ E + ++++ K + + D VI +DT L + G PG
Sbjct: 22 FEVLPSDIDETGLKGEPEDTVEELALLKARAVAERLPDAPVIADDTGLVVD---GRPGGK 78
Query: 54 QKNRFTRVTRKSCPFGLYKMLAGFIDKSAKAICTFAFGDRDGSKLQEFVQI 104
+ML G ++A+ + A D DG K+ F
Sbjct: 79 PARF----------AEALEMLRGLSGRTAEFVTAVALVDPDG-KIITFEGE 118
>gnl|CDD|184835 PRK14822, PRK14822, nucleoside-triphosphatase; Provisional.
Length = 200
Score = 69.5 bits (171), Expect = 3e-14
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 22/186 (11%)
Query: 97 KLQEFVQIL-GPNVPFRMIHKNIDLPELQ--GE-IDDLCKKKCERAMKSINDRVIVEDTC 152
K++EF +I ++ + + +PE++ G ++ K E A K++N VI +D+
Sbjct: 13 KVREFKEIFEKFDIEVKSLADFPPIPEVEETGTTFEENAILKAEAAAKALNKPVIADDSG 72
Query: 153 LCFNALGGLPGPYVKWF----------LQKIGPFGLYKMLAG--FIDKSAKAICTFAFGD 200
L +AL G PG Y + +K L K L G F ++A+ C A
Sbjct: 73 LEVDALNGAPGVYSARYAGEAKDDAANNEK-----LLKELGGVPFEKRTARFHCVIAVAF 127
Query: 201 RDGSVRLFRGEAQGKIV-KPRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAAL 259
G + G +G+I+ +PRG N +D F +T E+ E+KN +S+R KA
Sbjct: 128 PGGETKTVEGTCEGEILEEPRGENGFGYDPLFYVPEKGKTMAELSSEEKNAISHRGKALK 187
Query: 260 KLKDFF 265
KL+
Sbjct: 188 KLEAEL 193
>gnl|CDD|237823 PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase;
Provisional.
Length = 191
Score = 65.5 bits (160), Expect = 6e-13
Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 8/186 (4%)
Query: 90 FGDRDGSKLQEFVQILGPNV---PFRMIHKNIDLPELQGEIDDLCKKKCERAMKSINDRV 146
F + KL+E IL + I + D+PE ++ K E K
Sbjct: 5 FATNNKHKLEEIRSILPEKIELLSLSDIGCHEDIPETADTLEGNALLKAEYVYKKYGYDC 64
Query: 147 IVEDTCLCFNALGGLPGPYVKWFL--QKIGPFGLYKMLAGFIDKSAKAIC--TFAFGDRD 202
+DT L AL G PG Y + + + K+L K + T D
Sbjct: 65 FADDTGLEVEALNGAPGVYSARYAGGEHNAEANMRKLLEELEGKDNRKAQFRTVIALILD 124
Query: 203 GSVRLFRGEAQGKIVK-PRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKL 261
G LF G +G+I+K RG + +D F P+G+ +T+ E+ E KNQ+S+R KA KL
Sbjct: 125 GKEHLFEGIIKGEIIKEKRGDSGFGYDPIFVPEGYDKTFAELGLEIKNQISHRAKAVQKL 184
Query: 262 KDFFMK 267
DF K
Sbjct: 185 IDFLSK 190
>gnl|CDD|237824 PRK14824, PRK14824, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 201
Score = 57.8 bits (140), Expect = 4e-10
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 22/135 (16%)
Query: 146 VIVEDTCLCFNALGGLPGPYVKWFLQKIGPFG----------------LYKMLAGFIDKS 189
V+ +D+ L AL G PG Y F Q FG L ++L G ++
Sbjct: 62 VLADDSGLEVPALEGYPGVYSSRFYQI--EFGGKEEVVESKDEANIRKLLRLLEGKQNRK 119
Query: 190 AKAICTFAFGDRDGSVRLF-RGEAQGKIV-KPRGRNMLSWDSCFQPDGFKQTYGEMPDEQ 247
A+ + G ++ GE +GKI +PRG +D F P+G+ +T E+ E+
Sbjct: 120 ARFVAFVVL--YFGDWGIWTEGECRGKIAEEPRGSGGFGYDPVFIPEGYNKTMAELSPEE 177
Query: 248 KNQVSYRYKAALKLK 262
KN++S+R KA KL
Sbjct: 178 KNKISHRGKAVRKLV 192
>gnl|CDD|173286 PRK14825, PRK14825, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 199
Score = 51.1 bits (122), Expect = 8e-08
Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 25/200 (12%)
Query: 87 TFAFGDRDGSKLQEFVQILG-PNVPFRMIHKNIDLPELQGEIDDLCKKKCERAMKSINDR 145
T F + +K+ E QIL PN+ I +N D+ E + K + + +N++
Sbjct: 3 TLFFATTNINKINEVKQILDIPNIKIE-IPQNFDIKETGKTFKENSLLKAKALFEILNNK 61
Query: 146 --VIVEDTCLCFNALGGLPGPYVKWFLQKIGPFGLYKMLAG------FID-------KSA 190
V ED+ LC AL PG Y K + Q + L K L+ ID ++A
Sbjct: 62 QPVFSEDSGLCIEALNLEPGIYSKRYDQ----YKLGKKLSTNEKNHLIIDLMKNEKNRTA 117
Query: 191 KAICTFAFGDRDGSVRLFRGEAQGKI---VKPRGRNMLSWDSCFQPDGFKQTYGEMPDEQ 247
IC ++ +DG++ F G +G I + +N +D F K+ E+ E+
Sbjct: 118 YFICNISYISKDGTILNFEGIIKGTIALSIDDYKKNGFGYDPIFLTKNNKR-LSELTLEE 176
Query: 248 KNQVSYRYKAALKLKDFFMK 267
KN++S+R A K K F M+
Sbjct: 177 KNKISHRGIAFDKFKKFLMQ 196
>gnl|CDD|173287 PRK14826, PRK14826, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 222
Score = 42.3 bits (100), Expect = 8e-05
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 21/130 (16%)
Query: 147 IVEDTCLCFNALGGLPGPYVKWFLQKIGPFG-----------LYKMLAGFIDKSAKAICT 195
+ +DT L +ALGG PG Y F P G L + G ++SA+
Sbjct: 81 LADDTGLEVDALGGAPGVYSARFAPV--PEGEKPTYEDNVRHLLSEMEGKTERSARFRTV 138
Query: 196 FAFGDR----DGSVRLFR---GEAQGKIVK-PRGRNMLSWDSCFQPDGFKQTYGEMPDEQ 247
A R +G+ G +G I +G +D F+ + +T+ EM E+
Sbjct: 139 IALKGRLPGKNGAFEFEETAEGVVEGSITTEKKGDGGFGYDPIFRVEATGKTFAEMSTEE 198
Query: 248 KNQVSYRYKA 257
KN +S+R A
Sbjct: 199 KNTISHRALA 208
>gnl|CDD|179431 PRK02491, PRK02491, putative deoxyribonucleotide triphosphate
pyrophosphatase/unknown domain fusion protein; Reviewed.
Length = 328
Score = 41.7 bits (98), Expect = 2e-04
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 27/200 (13%)
Query: 89 AFGD------RDGSKLQEFVQILGPNVPFRMIHKN--IDLPELQGE---IDDLCKKKCER 137
FGD R+ K +EF ++ G + +++ + N DLPE+ ++ + K E
Sbjct: 125 GFGDTILIATRNEGKTKEFRKLFG-KLGYKVENLNDYPDLPEVAETGMTFEENARLKAET 183
Query: 138 AMKSINDRVIVEDTCLCFNALGGLPGPYVKWFLQKIGPFG---------LYK--MLAGFI 186
+ V+ +D+ L +ALGGLPG W + GP L++ M+
Sbjct: 184 ISRLTGKMVLADDSGLKVDALGGLPG---VWSARFSGPDATDAENNAKLLHELAMVFDLK 240
Query: 187 DKSAKAICTFAFGDRDGSVRLFRGEAQGKI-VKPRGRNMLSWDSCFQPDGFKQTYGEMPD 245
D+SA+ T + + + G I +P+G N +D F + E+
Sbjct: 241 DRSAQFHTTLVVAAPNKDSLVVEADWPGYIATEPKGENGFGYDPLFLVGETGRHAAELTA 300
Query: 246 EQKNQVSYRYKAALKLKDFF 265
E+KNQ+S+R +A KL + F
Sbjct: 301 EEKNQLSHRGQAVKKLMEVF 320
>gnl|CDD|131096 TIGR02041, CysI, sulfite reductase (NADPH) hemoprotein,
beta-component. Sulfite reductase (NADPH) catalyzes a
six electron reduction of sulfite to sulfide in
prokaryotic organisms. It is a complex oligomeric enzyme
composed of two different peptides with a subunit
composition of alpha(8)-beta(4). The alpha component,
encoded by cysJ, is a flavoprotein containing both FMN
and FAD, while the beta component, encoded by cysI, is a
siroheme, iron-sulfur protein. In Salmonella typhimurium
and Escherichia coli, both the alpha and beta subunits
of sulfite reductase are located in a unidirectional
gene cluster along with phosphoadenosine phosphosulfate
reductase, which catalyzes a two step reduction of PAPS
to give free sulfite. In cyanobacteria and plant
species, sulfite reductase ferredoxin (EC 1.8.7.1)
catalyzes the reduction of sulfite to sulfide [Central
intermediary metabolism, Sulfur metabolism].
Length = 541
Score = 30.9 bits (70), Expect = 0.87
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 51 GDSQKNRFTRVTRKSCPFGLYK-MLA--GFIDKSAKAICTFAFGDRDGSKLQEFVQILGP 107
G + + R+T CP G + LA G + K+ G+R G +L
Sbjct: 449 GLADEEIVLRMT--GCPNGCGRPYLAEIGLVGKAPGRYNLMLGGNRRGQRLP-------- 498
Query: 108 NVPFRMIHKNIDLPELQGEIDDLCKK 133
R+ +NI PE+ E+D+L +
Sbjct: 499 ----RLYRENITEPEILAELDELLGR 520
>gnl|CDD|119338 cd06570, GH20_chitobiase-like_1, A functionally uncharacterized
subgroup of the Glycosyl hydrolase family 20 (GH20)
catalytic domain found in proteins similar to the
chitobiase of Serratia marcescens, a
beta-N-1,4-acetylhexosaminidase that hydrolyzes the
beta-1,4-glycosidic linkages in oligomers derived from
chitin. Chitin is degraded by a two step process: i) a
chitinase hydrolyzes the chitin to oligosaccharides and
disaccharides such as di-N-acetyl-D-glucosamine and
chitobiose, ii) chitobiase then further degrades these
oligomers into monomers. This subgroup lacks the
C-terminal PKD (polycystic kidney disease I)-like domain
found in the chitobiases. The GH20 hexosaminidases are
thought to act via a catalytic mechanism in which the
catalytic nucleophile is not provided by solvent or the
enzyme, but by the substrate itself.
Length = 311
Score = 30.1 bits (68), Expect = 1.1
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 208 FRGEAQGKIVKPRGRNMLSWDSCFQPD 234
F + KI+ G+ M+ WD PD
Sbjct: 188 FNQRVE-KILSKHGKKMIGWDEVLHPD 213
>gnl|CDD|211325 cd02550, PseudoU_synth_Rsu_Rlu_like, Pseudouridine synthase,
Rsu/Rlu family. This group is comprised of eukaryotic,
bacterial and archeal proteins similar to eight site
specific Escherichia coli pseudouridine synthases: RsuA,
RluA, RluB, RluC, RluD, RluE, RluF and TruA.
Pseudouridine synthases catalyze the isomerization of
specific uridines in a n RNA molecule to pseudouridines
(5-ribosyluracil, psi) requiring no cofactors. E. coli
RluC for example makes psi955, 2504 and 2580 in 23S RNA.
Some psi sites such as psi1917 in 23S RNA made by RluD
are universally conserved. Other psi sites occur in a
more restricted fashion, for example psi2819 in 21S
mitochondrial ribosomal RNA made by S. cerevisiae Pus5p
is only found in mitochondrial large subunit rRNAs from
some other species and in gram negative bacteria. The E.
coli counterpart of this psi residue is psi2580 in 23S
rRNA. psi2604in 23S RNA made by RluF has only been
detected in E.coli.
Length = 154
Score = 29.3 bits (66), Expect = 1.3
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 186 IDKSAKAICTFAFGDRDGSVRLFRGEAQGKIVKPRGRNMLSWDSC 230
++K + +C DRD +V + + G V GR L D+
Sbjct: 4 LNKPSGLVCHPTDRDRDPTVVVRLDKLHGPRVHAAGR--LDKDTS 46
>gnl|CDD|99848 cd06145, REX1_like, DEDDh 3'-5' exonuclease domain of RNA
exonuclease 1, -3 and similar eukaryotic proteins. This
subfamily is composed of RNA exonuclease 1 (REX1 or
Rex1p), REX3 (or Rex3p), and similar eukaryotic
proteins. In yeast, REX1 and REX3 are required for 5S
rRNA and MRP (mitochondrial RNA processing) RNA
maturation, respectively. They are DEDDh-type DnaQ-like
3'-5' exonucleases containing three conserved sequence
motifs termed ExoI, ExoII and ExoIII, with a specific
Hx(4)D conserved pattern at ExoIII. These motifs are
clustered around the active site and contain four
conserved acidic residues that serve as ligands for the
two metal ions required for catalysis. REX1 is the major
exonuclease responsible for pre-tRNA trail trimming and
may also be involved in nuclear CCA turnover. REX
proteins function in the processing and maturation of
many RNA species, similar to the function of Escherichia
coli RNase T.
Length = 150
Score = 28.6 bits (65), Expect = 1.9
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 137 RAMKSINDRVIVEDTCLCFNALGGLP 162
+A+K I+ RVI DT + F G P
Sbjct: 89 KALKLIHPRVI--DTAILFPHPRGPP 112
Score = 27.8 bits (63), Expect = 4.2
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 25 KAIKTINDRVIVEDTCLCFNALRGLP 50
KA+K I+ RVI DT + F RG P
Sbjct: 89 KALKLIHPRVI--DTAILFPHPRGPP 112
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 30.0 bits (67), Expect = 2.1
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 50 PGDSQKNRFTRVTR--KSC-PFGLYKMLAGFIDKSAKAICTFAFGDRDGSKLQEFVQILG 106
PG K+R + R F L + + I + + + R + E
Sbjct: 863 PGHEIKSRIEEIIRMVTVKYDFCLEVLGSVSISELPQGLYKRFIKVRSSYRSAEMFAKNT 922
Query: 107 PNVPFRMIHKNIDLPELQGEIDDLCKKKC 135
+PF + ++D + Q + +C + C
Sbjct: 923 --IPFFVFEHSMDTSQHQKLFEAVCDEVC 949
>gnl|CDD|177857 PLN02207, PLN02207, UDP-glycosyltransferase.
Length = 468
Score = 28.8 bits (64), Expect = 3.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 134 KCERAMKSINDRVIVEDTCLCFNALGGLPGPYVK 167
+ + MK ++D+ LCF ++G L GP VK
Sbjct: 261 RRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVK 294
>gnl|CDD|217233 pfam02794, HlyC, RTX toxin acyltransferase family. Members of this
family are enzymes EC:2.3.1.-. involved in fatty
acylation of the protoxins (HlyA) at lysine residues,
thereby converting them to the active toxin. Acyl-acyl
carrier protein (ACP) is the essential acyl donor. This
family show a number of conserved residues that are
possible candidates for participation in acyl transfer.
Site-directed mutagenesis of the single conserved
histidine residue in E. coli hlyC resulted in complete
inactivation of the enzyme.
Length = 134
Score = 27.7 bits (62), Expect = 3.7
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 167 KWFLQKIGPFGLYKMLA------GFIDKSAKAICTFAFGDRDGSVRLFRGEA 212
W + I PFG + + F + +A+ G + G + FRG A
Sbjct: 81 LWIIDWIAPFGHARAIYRDLRRRIFPGQKVRALRYDKGGQKRGKIMEFRGGA 132
>gnl|CDD|211332 cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA
family. This group is comprised of bacterial proteins
assigned to the RluA family of pseudouridine synthases.
Pseudouridine synthases catalyze the isomerization of
specific uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi). No cofactors are required. The
RluA family is comprised of proteins related to
Escherichia coli RluA.
Length = 246
Score = 27.2 bits (61), Expect = 7.9
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 214 GKIVKPRGRNMLSWDSCFQPDGFKQTYGEMPDE 246
G +V G L DS ++P F Y E+PDE
Sbjct: 1 GLVVDADGE-PLDPDSPYRPGTFVWYYRELPDE 32
>gnl|CDD|214553 smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of
extracellular domains. Human glioma
pathogenesis-related protein GliPR and the plant
pathogenesis-related protein represent functional links
between plant defense systems and human immune system.
This family has no known function.
Length = 144
Score = 26.6 bits (59), Expect = 9.6
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 15/47 (31%)
Query: 212 AQGKIVKPRGRNM--LSWDS------------C-FQPDGFKQTYGEM 243
A G + P NM L+WD C F + YGE
Sbjct: 18 AGGFLAAPAASNMLKLTWDCELASSAQNWANQCPFGHSTPRPGYGEN 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.438
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,295,253
Number of extensions: 1351482
Number of successful extensions: 1111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1084
Number of HSP's successfully gapped: 36
Length of query: 280
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 184
Effective length of database: 6,679,618
Effective search space: 1229049712
Effective search space used: 1229049712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.2 bits)