RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14448
(280 letters)
>2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine
triphosphate pyrophosphohydrolase, inosine
triphosphatase deficiency, ITP, IMP; 1.09A {Homo
sapiens} SCOP: c.51.4.1 PDB: 2j4e_A* 2i5d_A
Length = 196
Score = 215 bits (549), Expect = 1e-70
Identities = 99/176 (56%), Positives = 130/176 (73%), Gaps = 2/176 (1%)
Query: 97 KLQEFVQILGPNVPFRMIHKNIDLPELQGEIDDLCKKKCERAMKSINDRVIVEDTCLCFN 156
KL+E VQILG P ++ + IDLPE QGE D++ +KC+ A++ + V+VEDTCLCFN
Sbjct: 21 KLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFN 80
Query: 157 ALGGLPGPYVKWFLQKIGPFGLYKMLAGFIDKSAKAICTFAF--GDRDGSVRLFRGEAQG 214
ALGGLPGPY+KWFL+K+ P GL+++LAGF DKSA A+CTFA GD VRLFRG G
Sbjct: 81 ALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGRTSG 140
Query: 215 KIVKPRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKLKDFFMKMNA 270
+IV PRG WD CFQPDG++QTY EMP +KN VS+R++A L+L+++F + A
Sbjct: 141 RIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYFGSLAA 196
Score = 91.8 bits (229), Expect = 8e-23
Identities = 50/103 (48%), Positives = 67/103 (65%), Gaps = 4/103 (3%)
Query: 1 VIHKKIDLPELQGEIDDICKKKCEKAIKTINDRVIVEDTCLCFNALRGLPGDSQKNRFTR 60
++ +KIDLPE QGE D+I +KC++A++ + V+VEDTCLCFNAL GLPG K
Sbjct: 37 LVAQKIDLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFNALGGLPGPYIK----W 92
Query: 61 VTRKSCPFGLYKMLAGFIDKSAKAICTFAFGDRDGSKLQEFVQ 103
K P GL+++LAGF DKSA A+CTFA D S+ +
Sbjct: 93 FLEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFR 135
>1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A
{Methanocaldococcus jannaschii} SCOP: c.51.4.1 PDB:
2mjp_A*
Length = 193
Score = 191 bits (487), Expect = 3e-61
Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 3/173 (1%)
Query: 97 KLQEFVQILGPNVPFRMIHKNIDLPELQGEIDDLCKKKCERAMKSINDRVIVEDTCLCFN 156
K++E IL + I PE+QG ++++ + + + VIVED+
Sbjct: 20 KIKEANIILKDLKDVEIEQIKISYPEIQGTLEEVAEFGAKWVYNILKKPVIVEDSGFFVE 79
Query: 157 ALGGLPGPYVKWFLQKIGPFGLYKMLAGFIDKSAKAICTFAFGDRDGSVRLFRGEAQGKI 216
AL G PG Y K+ + IG G+ K+L G +++A + D +G VRLF+G +G++
Sbjct: 80 ALNGFPGTYSKFVQETIGNEGILKLLEGKDNRNAYFKTVIGYCDENG-VRLFKGIVKGRV 138
Query: 217 V-KPRGRNML-SWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKLKDFFMK 267
+ R + ++DS F P+ ++T+ EM E+K+Q+S+R KA + K F +
Sbjct: 139 SEEIRSKGYGFAYDSIFIPEEEERTFAEMTTEEKSQISHRKKAFEEFKKFLLD 191
Score = 85.6 bits (213), Expect = 2e-20
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 1 VIHKKIDLPELQGEIDDICKKKCEKAIKTINDRVIVEDTCLCFNALRGLPG-------DS 53
+ KI PE+QG ++++ + + + VIVED+ AL G PG ++
Sbjct: 36 IEQIKISYPEIQGTLEEVAEFGAKWVYNILKKPVIVEDSGFFVEALNGFPGTYSKFVQET 95
Query: 54 QKNRFTRVTRKSCPFGLYKMLAGFIDKSAKAICTFAFGDRDGSKL 98
N G+ K+L G +++A + D +G +L
Sbjct: 96 IGNE-----------GILKLLEGKDNRNAYFKTVIGYCDENGVRL 129
>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken
structural genomics/prote initiative, RSGI, hydrolase;
HET: CIT; 1.40A {Pyrococcus horikoshii} SCOP: c.51.4.1
PDB: 2dvn_A* 2dvo_A* 2dvp_A 2ehk_A 2zti_A 2e5x_A*
Length = 186
Score = 182 bits (465), Expect = 5e-58
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 4/173 (2%)
Query: 97 KLQEFVQILGPNVPFRMIHKNIDLPELQGE-IDDLCKKKCERAMKSINDRVIVEDTCLCF 155
K++E LG ++ + PE+Q E ++D+ + + ++ED+ L
Sbjct: 12 KVREVANFLGT-FGIEIVQLKHEYPEIQAEKLEDVVDFGISWLKGKVPEPFMIEDSGLFI 70
Query: 156 NALGGLPGPYVKWFLQKIGPFGLYKMLAGFIDKSAKAICTFAFGDRDGSVRLFRGEAQGK 215
+L G PG Y + + IG G+ K++ G D+ A F DG F G G+
Sbjct: 71 ESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGFYI-DGKAYKFSGVTWGR 129
Query: 216 IVK-PRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKLKDFFMK 267
I RG + +D F P+G ++T+ EM E+KN +S+R KA ++
Sbjct: 130 ISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKALKAFFEWLKV 182
Score = 77.1 bits (191), Expect = 2e-17
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 19/98 (19%)
Query: 1 VIHKKIDLPELQGE-IDDICKKKCEKAIKTINDRVIVEDTCLCFNALRGLPG-------D 52
++ K + PE+Q E ++D+ + + ++ED+ L +L+G PG
Sbjct: 27 IVQLKHEYPEIQAEKLEDVVDFGISWLKGKVPEPFMIEDSGLFIESLKGFPGVYSSYVYR 86
Query: 53 SQKNRFTRVTRKSCPFGLYKMLAGFIDKSAKAICTFAF 90
+ G+ K++ G D+ A F
Sbjct: 87 TIGLE-----------GILKLMEGAEDRRAYFKSVIGF 113
>1vp2_A Putative xanthosine triphosphate pyrophosphatase/ protein homolog;
structural genomics, joint center for structural
genomics, JCSG; 1.78A {Thermotoga maritima} SCOP:
c.51.4.1
Length = 208
Score = 81.0 bits (201), Expect = 1e-18
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 12/180 (6%)
Query: 97 KLQEFVQILGPNVPFRMIHKNIDLPELQGEIDDLCKKKCERAMKSINDRVIVEDTCLCFN 156
K++E I + + I++ E + KK K + V+ +D+ L
Sbjct: 27 KVEEIKMIAPEWMEILPSPEKIEVVEDGETFLENSVKKAVVYGKKLKHPVMADDSGLVIY 86
Query: 157 ALGGLPGPY------VKWFLQKIGPFGLYKMLAGFIDKSAKAICTFAFGD-RDGSVRLFR 209
+LGG PG + +K+ + KML G D+ A +C+ F D + ++
Sbjct: 87 SLGGFPGVMSARFMEEHSYKEKMR--TILKMLEG-KDRRAAFVCSATFFDPVENTLISVE 143
Query: 210 GEAQGKIV-KPRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKLKDFFMKM 268
+G+I + RG +D F PDG+ +T+GE+P K ++S+R KA KL K+
Sbjct: 144 DRVEGRIANEIRGTGGFGYDPFFIPDGYDKTFGEIPHL-KEKISHRSKAFRKLFSVLEKI 202
>3tqu_A Non-canonical purine NTP pyrophosphatase; HAM1 protein, hydrolase;
HET: MSE; 1.90A {Coxiella burnetii}
Length = 203
Score = 67.1 bits (165), Expect = 1e-13
Identities = 40/202 (19%), Positives = 72/202 (35%), Gaps = 47/202 (23%)
Query: 97 KLQEFVQILGPNVPFRMIHKNIDL-PELQGEIDDL----------CKKKCERAMKSINDR 145
KL E ++L I P+ + + D+ K A K
Sbjct: 16 KLAEMQELLRD--------LEIKFIPQTEFSVPDIEETGSTFVENAIIKARHAAKQTGLP 67
Query: 146 VIVEDTCLCFNALGGLPGPY--------------VKWFLQKIGPFGLYKMLAG--FIDKS 189
+ +D+ L AL PG + ++ L+ L D+S
Sbjct: 68 ALADDSGLTIAALNSAPGVFSSRYAGKNATDAERIQKVLEA---------LEAADDSDRS 118
Query: 190 AKAICT--FAFGDRDGSVRLFRGEAQGKIV-KPRGRNMLSWDSCFQPDGFKQTYGEMPDE 246
A C + D + + G +G+I +PRG+N +D F ++T E+ +
Sbjct: 119 ASFHCVIALMENENDPAPLICHGVWEGEIAREPRGKNGFGYDPIFYVPSHQRTAAELDPQ 178
Query: 247 QKNQVSYRYKAALKLKDFFMKM 268
+KN +S+R +A +L +
Sbjct: 179 EKNAISHRGQALEQLSTVLTEA 200
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered
Se-Met, structural genomics, putative ribosomal protein,
PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1
PDB: 2q16_A* 2pyu_A*
Length = 221
Score = 65.2 bits (160), Expect = 7e-13
Identities = 41/195 (21%), Positives = 67/195 (34%), Gaps = 39/195 (20%)
Query: 97 KLQEFVQILGPNVPFRMIHKNIDL-PELQGEIDDL----------CKKKCERAMKSINDR 145
K++E +L +D+ + +D K A K
Sbjct: 35 KVRELASLLSD--------FGLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKVTALP 86
Query: 146 VIVEDTCLCFNALGGLPGPYVKWF----------LQKIGPFGLYKMLAGFIDK--SAKAI 193
I +D+ L + LGG PG Y + LQK L + + D A+
Sbjct: 87 AIADDSGLAVDVLGGAPGIYSARYSGEDATDQKNLQK-----LLETMKDVPDDQRQARFH 141
Query: 194 CTFAF--GDRDGSVRLFRGEAQGKIV-KPRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQ 250
C + D + + G G I +P G +D F +T E+ E+K+
Sbjct: 142 CVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAELTREEKSA 201
Query: 251 VSYRYKAALKLKDFF 265
+S+R +A L D
Sbjct: 202 ISHRGQALKLLLDAL 216
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 40/229 (17%), Positives = 67/229 (29%), Gaps = 58/229 (25%)
Query: 39 TCLCFNALRGLPGDSQ-KNRFTR----VTRK-------SCPFGLYKMLAGFIDKSAKAIC 86
T F A SQ + +F + T + P L G++ +
Sbjct: 24 TASFFIA-------SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 87 TFAFGDRDGSKLQEFVQ-ILGPNVPFRMIHK-----NIDLPELQGEIDDLCK-------- 132
F L EF L N IH + + +L K
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGN----DIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 133 --KKCERAMKSINDRVIVEDTCLCFNALGGLPGPYVKWF--LQKIGPFGLYK-MLAGFID 187
+ ++ S R + E GG G +F L+ + + Y ++ I
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGG-QGNTDDYFEELRDL--YQTYHVLVGDLIK 189
Query: 188 KSAKAICTFAFGDRDGSVRLFRGEAQGKIVKPRGRNMLSW--DSCFQPD 234
SA+ + D ++F +G N+L W + PD
Sbjct: 190 FSAETLSELIRTTLDAE-KVF----------TQGLNILEWLENPSNTPD 227
Score = 39.3 bits (91), Expect = 0.001
Identities = 40/191 (20%), Positives = 57/191 (29%), Gaps = 72/191 (37%)
Query: 70 LYKMLAGFIDKSAKAICTFA---FGDRDGSKLQEFVQILGPN---VPF-----RMIHKNI 118
LYK K+A+ + A F D G + + V P + F + I +N
Sbjct: 1635 LYKT-----SKAAQDVWNRADNHFKDTYGFSILDIVIN-NPVNLTIHFGGEKGKRIREN- 1687
Query: 119 DLPELQGEIDDLCKKKCERAMKSINDRVIVEDTCLCFNALGGLPGPYVK----WFLQKIG 174
+ E K K E+ K IN+ T F F Q
Sbjct: 1688 -YSAMIFETIVDGKLKTEKIFKEINEHS----TSYTFR------SEKGLLSATQFTQ--- 1733
Query: 175 P------FGLYKML--AGFIDKSAKAICTFAFGDRDG-SVRLFRGE-----AQG------ 214
P ++ L G I A TFA G S+ GE +
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADA----TFA-----GHSL----GEYAALASLADVMSIE 1780
Query: 215 ---KIVKPRGR 222
++V RG
Sbjct: 1781 SLVEVVFYRGM 1791
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 5e-04
Identities = 46/307 (14%), Positives = 94/307 (30%), Gaps = 92/307 (29%)
Query: 1 VIHKKI-DLPELQGEID----DICKKKCEKAIKTIN-------DRV--IVEDTCLCFNAL 46
+ + DLP + I + + T + D++ I+E N L
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE---SSLNVL 366
Query: 47 RGLPGDSQKNRFTRVTRKSCPFGLYKMLAGF---IDKSAKAICTFAFGDRDGSKLQEFVQ 103
P + +K ++ L+ F + + D S + V
Sbjct: 367 E--PAEYRK--------------MFDRLSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVN 409
Query: 104 ILGPNVPFRMIHKN-----IDLPELQGEIDDLCKKKCERAM-KSINDRVIVEDTCLCFNA 157
L + ++ K I +P + ++ K + E A+ +SI D + +
Sbjct: 410 KL---HKYSLVEKQPKESTISIPSIY--LELKVKLENEYALHRSIVDHYNIPK-TFDSDD 463
Query: 158 LGGLPG-PYVKWFL-------QKIGPFGLYKMLAGFIDKSAKAICTFAFGDRDGSVRLFR 209
L Y + + L++M+ F+D F F
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--FLD--------FRF----------- 502
Query: 210 GEAQGKIVKPRGRNMLSWDSCFQ-PDGFKQ--TYGEMPDEQKNQVSYRYKAALK-LKDFF 265
+ KI + +W++ + +Q Y + +Y+ + + DF
Sbjct: 503 --LEQKIR----HDSTAWNASGSILNTLQQLKFYKPYICDNDP----KYERLVNAILDFL 552
Query: 266 MKMNANL 272
K+ NL
Sbjct: 553 PKIEENL 559
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 30.1 bits (67), Expect = 0.81
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 4/50 (8%)
Query: 195 TFAFGDRDGSVRLFR---GEAQGKIVKP-RGRNMLSWDSCFQPDGFKQTY 240
T D+ G V + +P G + D D +
Sbjct: 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQF 212
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 28.7 bits (64), Expect = 2.1
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 195 TFAFGDRDGSVRLFRGEAQGKIVKPRGRNMLS---WDSCFQPDGFKQTY 240
DGS+ +++ + Q K V F + Q Y
Sbjct: 25 LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 3.9
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 246 EQKNQVSYRYKAALKLKDFFMKMNANLRTNSKKGR 280
+ + +R KA L+++ + + + N R
Sbjct: 105 SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 27.8 bits (61), Expect = 4.4
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 195 TFAFGDRDGSVRLFRGEAQGKIVKPRGRNMLSWDSCF 231
A GD+ G V +F+ E + KI + +
Sbjct: 42 LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ 78
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 26.8 bits (60), Expect = 8.2
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 195 TFAFGDRDGSVRLFRGEAQGKIVKPRGRNMLSWDSCFQPDG 235
T A DG + +A+ K+ + CF +G
Sbjct: 287 TLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG 327
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.438
Gapped
Lambda K H
0.267 0.0864 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,408,543
Number of extensions: 265615
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 18
Length of query: 280
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,133,061
Effective search space: 777015468
Effective search space used: 777015468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.5 bits)