RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14448
(280 letters)
>d2cara1 c.51.4.1 (A:1-194) Inosine triphosphate pyrophosphatase,
ITPase {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 113 bits (282), Expect = 3e-31
Identities = 90/176 (51%), Positives = 121/176 (68%), Gaps = 2/176 (1%)
Query: 97 KLQEFVQILGPNVPFRMIHKNIDLPELQGEIDDLCKKKCERAMKSINDRVIVEDTCLCFN 156
KL+E VQILG P ++ + IDLPE QGE D++ +KC+ A++ + V+VEDTCLCFN
Sbjct: 19 KLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEAVRQVQGPVLVEDTCLCFN 78
Query: 157 ALGGLPGPYVKWFLQKIGPFGLYKMLAG--FIDKSAKAICTFAFGDRDGSVRLFRGEAQG 214
ALGGLPGPY+KWFL+K+ P GL+++LAG A + GD VRLFRG G
Sbjct: 79 ALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGRTSG 138
Query: 215 KIVKPRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKLKDFFMKMNA 270
+IV PRG WD CFQPDG++QTY EMP +KN VS+R++A L+L+++F + A
Sbjct: 139 RIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYFGSLAA 194
>d1vp2a_ c.51.4.1 (A:) Putative inosine/xanthosine triphosphate
pyrophosphatase TM0159 {Thermotoga maritima [TaxId:
2336]}
Length = 189
Score = 96.5 bits (239), Expect = 5e-25
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 6/177 (3%)
Query: 97 KLQEFVQILGPNVPFRMIHKNIDLPELQGEIDDLCKKKCERAMKSINDRVIVEDTCLCFN 156
K++E I + + I++ E + KK K + V+ +D+ L
Sbjct: 13 KVEEIKMIAPEWMEILPSPEKIEVVEDGETFLENSVKKAVVYGKKLKHPVMADDSGLVIY 72
Query: 157 ALGGLPGPYVKWFLQ----KIGPFGLYKMLAGFIDKSAKAICTFAFGDRDGSVRLFRGE- 211
+LGG PG F++ K + KML G ++A F + ++
Sbjct: 73 SLGGFPGVMSARFMEEHSYKEKMRTILKMLEGKDRRAAFVCSATFFDPVENTLISVEDRV 132
Query: 212 AQGKIVKPRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKLKDFFMKM 268
+ RG +D F PDG+ +T+GE+P K ++S+R KA KL K+
Sbjct: 133 EGRIANEIRGTGGFGYDPFFIPDGYDKTFGEIPHL-KEKISHRSKAFRKLFSVLEKI 188
Score = 31.0 bits (69), Expect = 0.10
Identities = 20/88 (22%), Positives = 33/88 (37%)
Query: 3 HKKIDLPELQGEIDDICKKKCEKAIKTINDRVIVEDTCLCFNALRGLPGDSQKNRFTRVT 62
+KI++ E + KK K + V+ +D+ L +L G PG +
Sbjct: 31 PEKIEVVEDGETFLENSVKKAVVYGKKLKHPVMADDSGLVIYSLGGFPGVMSARFMEEHS 90
Query: 63 RKSCPFGLYKMLAGFIDKSAKAICTFAF 90
K + KML G ++A F
Sbjct: 91 YKEKMRTILKMLEGKDRRAAFVCSATFF 118
>d1b78a_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 184
Score = 94.6 bits (234), Expect = 2e-24
Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 3/173 (1%)
Query: 97 KLQEFVQILGPNVPFRMIHKNIDLPELQGEIDDLCKKKCERAMKSINDRVIVEDTCLCFN 156
K++E IL + I PE+QG ++++ + + + VIVED+
Sbjct: 11 KIKEANIILKDLKDVEIEQIKISYPEIQGTLEEVAEFGAKWVYNILKKPVIVEDSGFFVE 70
Query: 157 ALGGLPGPYVKWFLQKIGPFGLYKMLAGFIDKSAKAICTFAFGDRDGSVRLFRGEAQGKI 216
AL G PG Y K+ + IG G+ K+L G +++A + + VRLF+G +G++
Sbjct: 71 ALNGFPGTYSKFVQETIGNEGILKLLEGKDNRNAYFKTVIGY-CDENGVRLFKGIVKGRV 129
Query: 217 VKPR--GRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKLKDFFMK 267
+ ++DS F P+ ++T+ EM E+K+Q+S+R KA + K F +
Sbjct: 130 SEEIRSKGYGFAYDSIFIPEEEERTFAEMTTEEKSQISHRKKAFEEFKKFLLD 182
>d1k7ka_ c.51.4.1 (A:) Hypothetical protein YggV {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 91.8 bits (227), Expect = 5e-23
Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 13/182 (7%)
Query: 97 KLQEFVQILGPNVP--FRMIHKNIDLPELQGE-IDDLCKKKCERAMKSINDRVIVEDTCL 153
K++E +L +D E G + K A K I +D+ L
Sbjct: 25 KVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKVTALPAIADDSGL 84
Query: 154 CFNALGGLPGPYVKWFLQKIGPFGL-------YKMLAGFIDKSAKAICTFAF--GDRDGS 204
+ LGG PG Y + + + A+ C + D +
Sbjct: 85 AVDVLGGAPGIYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARFHCVLVYLRHAEDPT 144
Query: 205 VRLFRGEAQGKIV-KPRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKLKD 263
+ G G I +P G +D F +T E+ E+K+ +S+R +A L D
Sbjct: 145 PLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAISHRGQALKLLLD 204
Query: 264 FF 265
Sbjct: 205 AL 206
>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 186
Score = 90.7 bits (224), Expect = 6e-23
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 4/171 (2%)
Query: 97 KLQEFVQILGPNVPFRMIHKNIDLPELQGE-IDDLCKKKCERAMKSINDRVIVEDTCLCF 155
K++E LG ++ + PE+Q E ++D+ + + ++ED+ L
Sbjct: 12 KVREVANFLGT-FGIEIVQLKHEYPEIQAEKLEDVVDFGISWLKGKVPEPFMIEDSGLFI 70
Query: 156 NALGGLPGPYVKWFLQKIGPFGLYKMLAGFIDKSAKAICTFAFGDRDGSVRLFRGEAQGK 215
+L G PG Y + + IG G+ K++ G D+ A F DG F G G+
Sbjct: 71 ESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGF-YIDGKAYKFSGVTWGR 129
Query: 216 IVK-PRGRNMLSWDSCFQPDGFKQTYGEMPDEQKNQVSYRYKAALKLKDFF 265
I RG + +D F P+G ++T+ EM E+KN +S+R KA ++
Sbjct: 130 ISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKALKAFFEWL 180
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 25.9 bits (55), Expect = 6.0
Identities = 13/117 (11%), Positives = 28/117 (23%), Gaps = 14/117 (11%)
Query: 129 DLCKKKCERAMKSINDRVIVEDTCLCFN------ALGGLPGPYVKWFLQKIGPFGLYKML 182
D+ + C + + +CF A G + L+ Y
Sbjct: 212 DVREGMCRQTFTGHESDI----NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267
Query: 183 AGFIDKSAKAIC----TFAFGDRDGSVRLFRGEAQGKIVKPRGRNMLSWDSCFQPDG 235
++ + G D + ++ + G + DG
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase,
N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 141
Score = 25.0 bits (55), Expect = 6.5
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 70 LYK--MLAGFIDKSAKAICTFAFGDRDGSKLQEFVQILG 106
YK M+ + A + F R+ L+ ++ +
Sbjct: 18 FYKLTMMQAVLHNYPNAEVEWEFRCRNQEDLRLYLPAIR 56
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 26.0 bits (55), Expect = 6.8
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 195 TFAFGDRDGSVRLFRGEAQGKIVKPRGRNMLS---WDSCFQPDG 235
DGS+ +++ + Q K V F +
Sbjct: 25 LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.438
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,098,556
Number of extensions: 53178
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 15
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.2 bits)