BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14449
         (673 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa
          Length = 429

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 168/405 (41%), Gaps = 74/405 (18%)

Query: 184 GIDDVPPWYLCIFMALQHYLTMIGAIVSIP--FILTPALCMREDDPARGHIISTMIFVTA 241
           G+ + PP    I ++LQH   M GA V +P  F + PA  +  +       I T++++  
Sbjct: 7   GVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNG------IGTLLYLFI 60

Query: 242 IVTFIQNTFGCRTMGHTYSESLRSAGY---VGWFSPSGVVGVLLKYVT------------ 286
               I    G      +    L   GY   +G F   GV+  L+ ++             
Sbjct: 61  CKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLF 120

Query: 287 -PLTIVPTVSLVGLSLFENAAEAA-----------SKHWGISVSTIIMLTVFSQCLSEVK 334
            P  +   V+++GL L   AA  A           SK   IS++T+            V 
Sbjct: 121 PPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTL-----------AVT 169

Query: 335 VPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTEALPKGHPARTDVKLRIL 394
           V G          +++     + P+L+ +++ + +   + + +  P             +
Sbjct: 170 VLG---------SVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTP-------------I 207

Query: 395 EDSSWFRVPYPGQWGTPTVSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAIN 454
            ++ WF +P      TP      +L +L   L    E + +   T+ +          ++
Sbjct: 208 INAHWFALP---TLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLH 264

Query: 455 RGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFG 514
           R +   GL TV++G +GS   T T+GEN+G + +T+V S  VI  A    +L   + K  
Sbjct: 265 RSMFANGLSTVISGFFGSTPNT-TYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLA 323

Query: 515 AVFIIIPEPVVGGIFCVMFGMIAAFGLSAL--QYVDLNSSRNLYI 557
           A   +IP PV+GG+  +++G+I A G+  L    VD N ++NL +
Sbjct: 324 AAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLIL 368


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.140    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,861,914
Number of Sequences: 62578
Number of extensions: 821754
Number of successful extensions: 1407
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1404
Number of HSP's gapped (non-prelim): 2
length of query: 673
length of database: 14,973,337
effective HSP length: 105
effective length of query: 568
effective length of database: 8,402,647
effective search space: 4772703496
effective search space used: 4772703496
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)