Query         psy14449
Match_columns 673
No_of_seqs    421 out of 1871
Neff          6.1 
Searched_HMMs 46136
Date          Fri Aug 16 20:08:05 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy14449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14449hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG1292|consensus              100.0  5E-114  1E-118  926.3  31.4  459  182-657     2-510 (510)
  2 COG2233 UraA Xanthine/uracil p 100.0 9.3E-68   2E-72  576.0  31.9  387  183-617     7-438 (451)
  3 PRK11412 putative uracil/xanth 100.0 2.2E-66 4.7E-71  571.1  32.8  375  192-616     8-431 (433)
  4 PRK10720 uracil transporter; P 100.0 1.6E-59 3.5E-64  518.5  32.0  374  181-621     3-414 (428)
  5 TIGR03616 RutG pyrimidine util 100.0 8.6E-59 1.9E-63  512.6  35.2  372  180-614    18-427 (429)
  6 TIGR00801 ncs2 uracil-xanthine 100.0 8.6E-58 1.9E-62  503.6  32.9  370  188-611     1-415 (415)
  7 TIGR03173 pbuX xanthine permea 100.0 1.7E-55 3.8E-60  484.1  29.1  368  198-613     1-406 (406)
  8 PF00860 Xan_ur_permease:  Perm 100.0 1.3E-55 2.9E-60  482.6  18.2  343  192-571     1-386 (389)
  9 KOG1292|consensus              100.0 1.4E-48 2.9E-53  420.7  10.7  314    8-376   110-465 (510)
 10 COG2252 Xanthine/uracil/vitami  99.9 1.5E-23 3.2E-28  228.4  22.9  322  180-552     7-374 (436)
 11 TIGR00843 benE benzoate transp  99.4 5.5E-11 1.2E-15  130.0  26.6  292  194-538    23-347 (395)
 12 COG0659 SUL1 Sulfate permease   99.4 1.6E-11 3.5E-16  140.4  22.7  293  192-543    22-370 (554)
 13 PRK11412 putative uracil/xanth  99.3 3.8E-12 8.2E-17  141.5  11.6  251   10-327    98-391 (433)
 14 PRK11660 putative transporter;  99.2 5.7E-10 1.2E-14  128.6  22.5  108  418-532   282-389 (568)
 15 TIGR00815 sulP high affinity s  99.2 1.1E-09 2.4E-14  126.2  19.8  117  409-532   249-369 (563)
 16 COG2233 UraA Xanthine/uracil p  99.1 5.7E-11 1.2E-15  131.3   7.4  280   10-376   103-432 (451)
 17 PF00860 Xan_ur_permease:  Perm  99.1 3.3E-11 7.1E-16  132.7   4.9  260    8-328    85-385 (389)
 18 PF00916 Sulfate_transp:  Sulfa  99.0   7E-10 1.5E-14  116.2   9.0  124  417-547   149-273 (280)
 19 TIGR03173 pbuX xanthine permea  98.9   1E-09 2.2E-14  121.6   6.9  247    8-326    78-369 (406)
 20 TIGR00801 ncs2 uracil-xanthine  98.9 1.1E-09 2.4E-14  121.6   5.8  247    9-327    87-386 (415)
 21 PF03594 BenE:  Benzoate membra  98.9 4.8E-07   1E-11   98.0  24.7  289  194-537     7-330 (378)
 22 TIGR03616 RutG pyrimidine util  98.8 5.2E-09 1.1E-13  116.8   6.6  246   10-326   107-398 (429)
 23 PRK10720 uracil transporter; P  98.8 6.3E-09 1.4E-13  116.1   6.6  243   10-328    84-380 (428)
 24 COG3135 BenE Uncharacterized p  98.7 3.3E-06 7.1E-11   90.2  24.5  278  193-528    21-335 (402)
 25 KOG0236|consensus               98.0 0.00019 4.1E-09   84.6  17.9  159  354-531   278-436 (665)
 26 TIGR00834 ae anion exchange pr  96.6    0.98 2.1E-05   55.1  27.0  182  352-546   593-798 (900)
 27 KOG1172|consensus               95.8     1.3 2.7E-05   53.3  22.2  181  352-546   572-774 (876)
 28 PF00955 HCO3_cotransp:  HCO3-   87.8    0.17 3.6E-06   58.2   0.1  184  351-546   277-479 (510)
 29 TIGR00843 benE benzoate transp  85.1     4.5 9.7E-05   45.3   9.5  113  233-372   256-394 (395)
 30 COG0659 SUL1 Sulfate permease   85.0       3 6.5E-05   48.7   8.5  122  416-549    23-155 (554)
 31 TIGR00815 sulP high affinity s  75.5      10 0.00022   44.3   8.6  121  416-548    16-153 (563)
 32 PF11840 DUF3360:  Protein of u  63.7 2.5E+02  0.0055   31.5  16.5  201  314-546   206-415 (492)
 33 PRK11660 putative transporter;  62.8 1.6E+02  0.0034   34.6  14.9   72  233-304   313-396 (568)
 34 PF03594 BenE:  Benzoate membra  57.2      21 0.00045   39.8   5.9  118  413-547     3-141 (378)
 35 TIGR00822 EII-Sor PTS system,   23.7 2.9E+02  0.0063   29.5   7.7   40  510-550   163-202 (265)
 36 PF11744 ALMT:  Aluminium activ  23.1      17 0.00037   40.9  -1.6   69  461-542    67-140 (406)
 37 KOG4085|consensus               22.5 1.1E+02  0.0024   29.6   3.9   46  489-538    28-73  (175)
 38 COG1620 LldP L-lactate permeas  21.4   6E+02   0.013   29.7  10.1   81  418-520    69-149 (522)

No 1  
>KOG1292|consensus
Probab=100.00  E-value=4.6e-114  Score=926.26  Aligned_cols=459  Identities=45%  Similarity=0.846  Sum_probs=438.9

Q ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCchh-hHHHHHHHHHHHHHHHHHHHhcCCC---ccc
Q psy14449        182 TYGIDDVPPWYLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPAR-GHIISTMIFVTAIVTFIQNTFGCRT---MGH  257 (673)
Q Consensus       182 ~y~v~~~ppw~~~i~lGlQh~lam~~~~vv~Plil~~algl~~~~~~~-~~lIs~~i~~sGI~TLLq~lfG~rL---~G~  257 (673)
                      .|+++|+|||+..+++|+|||+.|+++++++|.++++++|.+.+  ++ +++||+.++++||+|++|++||+||   ||+
T Consensus         2 ~y~i~d~P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~m~~g~~--~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~   79 (510)
T KOG1292|consen    2 HYCINDNPPWPEIILLGFQHYLVCLGTTVLIPFLLVPLMCGGDE--EKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGP   79 (510)
T ss_pred             ccCCCCCCCchHHHHhccchHHHHhhhhhhhhhhhcccccCChH--HHHHHHHHHHhhhccHHHHHHHHhhccccccccc
Confidence            59999999999999999999999999999999999999987654  44 9999999999999999999999999   999


Q ss_pred             chH-----------------------------HHHHHH-HH--HH-----HHHHHhHHHHHHHhhCCcchhhHHHHhhhh
Q psy14449        258 TYS-----------------------------ESLRSA-GY--VG-----WFSPSGVVGVLLKYVTPLTIVPTVSLVGLS  300 (673)
Q Consensus       258 Sfa-----------------------------~~~~~i-Ga--Va-----ilg~~gl~g~l~~~~pPlvig~~I~lIGLs  300 (673)
                      |||                             +.||++ ||  |+     ++|++|++|++.|+++|++++|.++++|++
T Consensus        80 Sfafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~  159 (510)
T KOG1292|consen   80 SFAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLG  159 (510)
T ss_pred             ceehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhh
Confidence            998                             146777 88  55     899999999999999999999999999999


Q ss_pred             hHHHHHHhhhccccchhhhhHHHHHHhhh--ccccccCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhhccc
Q psy14449        301 LFENAAEAASKHWGISVSTIIMLTVFSQC--LSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTEA  378 (673)
Q Consensus       301 l~~~~~~~~~~~~~Ia~~sl~lil~~~~y--l~~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiigwl~a~iLg~~~~  378 (673)
                      +++.+.+..++||+|++..+++.++++||  ++           +++....+.++|++|+++++++++|++|++||.+|+
T Consensus       160 l~~~~~~~~~~~weI~l~~~llli~fsqy~~~~-----------~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tga  228 (510)
T KOG1292|consen  160 LFQDGFPKLGKHWEISLPEILLLILFSQYASLP-----------KKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGA  228 (510)
T ss_pred             hHHhhhhhhhhheeecHHHHHHHHHHHHhhhcc-----------cccccccccchHhhccHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999  43           233445567899999999999999999999999999


Q ss_pred             CCC-----CCCCccccccccccCCCcccccccccccccccccchHHHHHHHHHHhhccccchHHHHhchhCCCCCCCccc
Q psy14449        379 LPK-----GHPARTDVKLRILEDSSWFRVPYPGQWGTPTVSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAI  453 (673)
Q Consensus       379 ~p~-----~~~~rtd~~~~~i~~apw~~~P~p~~~g~P~f~~~~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i  453 (673)
                      ||+     +.+||||.+ ..++++||+++|||+|||.|+||++.+++|+++++++++||+|+|+|++|++++++||+|.+
T Consensus       229 y~~~~~~t~~~~RTD~~-~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~i  307 (510)
T KOG1292|consen  229 YPYKPTTTQSSCRTDRN-GVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVL  307 (510)
T ss_pred             cCCCccccCCcccccHh-hhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhh
Confidence            998     899999966 48999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhHHHHhhhcCCCCCccccccccceecccccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHH
Q psy14449        454 NRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMF  533 (673)
Q Consensus       454 ~Rgi~~dGigsilaGl~Gtg~g~Tt~seN~G~i~~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~f  533 (673)
                      |||+++||+|++++|+||+|+|+|+|+||+|++++|||+|||++|+||+|||++|+++||||+|++||+|++||++|++|
T Consensus       308 nRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~  387 (510)
T KOG1292|consen  308 NRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILF  387 (510)
T ss_pred             hhhhhhhhHHHHHHHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhccCCCCcceEEEehhhhhhhhhhhHhhhccccccccccchhHHHHHHhccchhHHHHHHHHHhhcCC
Q psy14449        534 GMIAAFGLSALQYVDLNSSRNLYIIGFSMFFSLVLPKWMVHNADAIRTGSDIVDSILTVLLSTSILVGGMLGCLLDNLIP  613 (673)
Q Consensus       534 g~i~~~Gls~L~~vdl~s~Rn~~IvG~sl~~Gl~~P~~~~~~p~~~~tg~~~l~~~l~~llss~~~vg~l~aiiLd~~~p  613 (673)
                      ||+.++|+||||++|+|++||++|+|+|+|+|+++|+||+++|.++|||.+|+||+++++|++.|+||+++|++||||+|
T Consensus       388 ~mv~avgLSnLQf~dlns~RNl~IlG~Sif~gLsip~yF~~~~~~v~Tg~~~~d~ilnvll~~~m~Vggi~A~~LDnt~~  467 (510)
T KOG1292|consen  388 GMVGAVGLSNLQFVDLNSSRNLFILGFSIFLGLSIPQYFEQYPGPVHTGNGWFDDILNVLLSSRMLVGGILAFILDNTLP  467 (510)
T ss_pred             HHHHHHhhhhheeeccccccchhhhhHHHHHhccHHHHHHhCCCccccCcHHHHHHHHHHhhHHHHHHHHHhhhccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C-CCccccccccccccccCCCCCCCCCCccccCCCCCC-ccccccc
Q psy14449        614 G-TPEERGLVAWGEQMKLVSEPTVHGEYNTFDFPVGMA-TLRRWKW  657 (673)
Q Consensus       614 ~-t~~erg~~~w~~~~~~~~~~~~~~~~~~y~lp~~~~-~~~~~~~  657 (673)
                      + ||||||++||+|+++.+.|.   +++|+|+||+++| ++++++|
T Consensus       468 gatr~~RG~~~w~~~~~~~~d~---~~~e~Y~lP~~~n~~f~~~~~  510 (510)
T KOG1292|consen  468 GATREQRGLRWWDKFETFNGDV---RNEEFYSLPFNLNRFFPRIPW  510 (510)
T ss_pred             CCChHhcCCcchhccccccCCc---cccccccCcHHHHhhcccCCC
Confidence            9 79999999999999999988   7889999999998 8888887


No 2  
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00  E-value=9.3e-68  Score=576.01  Aligned_cols=387  Identities=28%  Similarity=0.492  Sum_probs=349.3

Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHHH----hcCCC---c
Q psy14449        183 YGIDDVPPWYLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQNT----FGCRT---M  255 (673)
Q Consensus       183 y~v~~~ppw~~~i~lGlQh~lam~~~~vv~Plil~~algl~~~~~~~~~lIs~~i~~sGI~TLLq~l----fG~rL---~  255 (673)
                      ...||++|+.+.+++|+||+++|+++++++|++++.++++  ++++..+++|+.+++||++|++|.+    +|.|+   +
T Consensus         7 ~~~~~~~~~~~~~~lglQH~lamfg~~V~VPlivg~a~~l--~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~l   84 (451)
T COG2233           7 VLVDERLPLGKLLLLGLQHLLAMFGATVLVPLLVGLALGL--SAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYL   84 (451)
T ss_pred             CcccccCChHHHHHHHHHHHHHHHhcchHhhHHhccCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeE
Confidence            3467788999999999999999999999999999998766  4567999999999999999999997    55576   9


Q ss_pred             ccchHH-----------H--HHHH-HH--HH---HHHHHhHHH-HHHHhhCCcchhhHHHHhhhhhHHHHHHhhh-----
Q psy14449        256 GHTYSE-----------S--LRSA-GY--VG---WFSPSGVVG-VLLKYVTPLTIVPTVSLVGLSLFENAAEAAS-----  310 (673)
Q Consensus       256 G~Sfa~-----------~--~~~i-Ga--Va---ilg~~gl~g-~l~~~~pPlvig~~I~lIGLsl~~~~~~~~~-----  310 (673)
                      |+||+.           +  ++.+ |+  ++   .+.+..+++ ++.|+|||+|+|+++++||++|.+++..+..     
T Consensus        85 G~sFafi~p~i~~~~~~g~~~~~~~G~ii~ag~~~~li~~~~~~~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~  164 (451)
T COG2233          85 GSSFAFVAPMIAIGGTTGDGIAALLGGIIAAGLVYFLISPIVKIRLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGA  164 (451)
T ss_pred             echHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCC
Confidence            999993           1  3444 55  22   233445566 9999999999999999999999999988753     


Q ss_pred             ---------ccccchhhhhHHHHHHhhhccccccCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhhcccCCC
Q psy14449        311 ---------KHWGISVSTIIMLTVFSQCLSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTEALPK  381 (673)
Q Consensus       311 ---------~~~~Ia~~sl~lil~~~~yl~~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiigwl~a~iLg~~~~~p~  381 (673)
                               .|+.+++.+++.++++++|.|                    +++|+.++|+|+++||++|+.+|.+|+   
T Consensus       165 ~~~~~~~~~~~l~la~~tl~~il~~~~f~~--------------------g~~~~i~ILiGlv~G~~la~~~G~vdf---  221 (451)
T COG2233         165 AGNPDFGSLENLGLALVTLLIILLINRFGK--------------------GFLRRIPILIGLVVGYLLALFMGMVDF---  221 (451)
T ss_pred             CCCcccCchhHHHHHHHHHHHHHHHHHHhh--------------------hHHHHHHHHHHHHHHHHHHHHhCCcCc---
Confidence                     357899999999999998776                    789999999999999999999998776   


Q ss_pred             CCCCccccccccccCCCcccccccccccccccccchHHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhh
Q psy14449        382 GHPARTDVKLRILEDSSWFRVPYPGQWGTPTVSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEG  461 (673)
Q Consensus       382 ~~~~rtd~~~~~i~~apw~~~P~p~~~g~P~f~~~~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dG  461 (673)
                                +.+.++||+++|.|++||. +||+.+++.|+..++++++|++||+.|.++.++++-.++++++||+.+||
T Consensus       222 ----------~~v~~a~w~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~rg~~aDG  290 (451)
T COG2233         222 ----------SGVAEAPWFALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRRGLLADG  290 (451)
T ss_pred             ----------cccccCceeeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCcccccceeecc
Confidence                      6789999999999999999 99999999999999999999999999999999988777789999999999


Q ss_pred             hHHHHhhhcCCCCCccccccccceecccccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q psy14449        462 LGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFGL  541 (673)
Q Consensus       462 igsilaGl~Gtg~g~Tt~seN~G~i~~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~fg~i~~~Gl  541 (673)
                      ++++++|+||+ .|.|+|+||+|++++||+.||+++.+++++++++|++||+++++++||.||+||+.+++||++.++|+
T Consensus       291 lat~iag~fg~-~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~ivmFG~Ia~sGi  369 (451)
T COG2233         291 LATLIAGLFGG-FPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLVLFGMIAASGI  369 (451)
T ss_pred             HHHHHHHhcCC-CCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHHHHHHHHHHHH
Confidence            99999999996 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhccCCCCc-ceEEEehhhhhhhhh---hhHhhhccccccccccchhHHHHHHhccchhHHHHHHHHHhhcCCCCCc
Q psy14449        542 SALQYVDLNSSR-NLYIIGFSMFFSLVL---PKWMVHNADAIRTGSDIVDSILTVLLSTSILVGGMLGCLLDNLIPGTPE  617 (673)
Q Consensus       542 s~L~~vdl~s~R-n~~IvG~sl~~Gl~~---P~~~~~~p~~~~tg~~~l~~~l~~llss~~~vg~l~aiiLd~~~p~t~~  617 (673)
                      +.+++.|+|++| |++|++.|+.+|++.   |+++++           +|..++.+++||+.+|+++|++||+++|+.++
T Consensus       370 r~l~~~~~~~~~~Nl~IvAvsl~~Gig~~~~p~~~~~-----------~p~~~~~l~~sGia~g~i~AIvLNlll~~~~~  438 (451)
T COG2233         370 RILIRNKVDRSRRNLLIVAVSLGLGIGVGAVPEVFLQ-----------LPAWLRPLLSSGIALGTLTAIVLNLLLPGEKR  438 (451)
T ss_pred             HHHHhcccccCccceeeehHHHHhCcchhcCchhhhh-----------CcHHHHHHHhccHHHHHHHHHHHHHhcccccc
Confidence            999999999866 999999999999984   444443           56668999999999999999999999996544


No 3  
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00  E-value=2.2e-66  Score=571.12  Aligned_cols=375  Identities=19%  Similarity=0.237  Sum_probs=329.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCC---cccchHH-------
Q psy14449        192 YLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQNTFGCRT---MGHTYSE-------  261 (673)
Q Consensus       192 ~~~i~lGlQh~lam~~~~vv~Plil~~algl~~~~~~~~~lIs~~i~~sGI~TLLq~lfG~rL---~G~Sfa~-------  261 (673)
                      .+.+++|+||+++|+++++++|+++++++|+  ++++..+++|++++++||+|++|+.+|+||   ||+||+.       
T Consensus         8 ~~~~~lglQhvl~m~~~~i~vPliva~a~gl--~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i   85 (433)
T PRK11412          8 RESLLSGFQWFFFIFCNTVVVPPTLLSAFQL--PQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTI   85 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHH
Confidence            3688999999999999999999999999876  457899999999999999999999999998   9999883       


Q ss_pred             -------H--HHHH-H----H--HH-----HHHHHhHHHHHHHhhCCcchhhHHHHhhhhhHHHHHHhhh----------
Q psy14449        262 -------S--LRSA-G----Y--VG-----WFSPSGVVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAAS----------  310 (673)
Q Consensus       262 -------~--~~~i-G----a--Va-----ilg~~gl~g~l~~~~pPlvig~~I~lIGLsl~~~~~~~~~----------  310 (673)
                             +  ++++ |    +  ++     ++|+++++++++|+|||+|+|++++++|+++.+.+.++..          
T Consensus        86 ~~~~~~~g~~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~~~~~  165 (433)
T PRK11412         86 TLGEASRGTPINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGIADPN  165 (433)
T ss_pred             HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccCcccc
Confidence                   1  2223 3    2  22     6788999999999999999999999999999999888541          


Q ss_pred             -----ccccchhhhhHHHHHHhhhccccccCccccccccccchhhhhhhhhhHHHHHHHHHHHHHH-HhhhcccCCCCCC
Q psy14449        311 -----KHWGISVSTIIMLTVFSQCLSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICG-LLTLTEALPKGHP  384 (673)
Q Consensus       311 -----~~~~Ia~~sl~lil~~~~yl~~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiigwl~a~-iLg~~~~~p~~~~  384 (673)
                           .++.+++.++..++.+.++.|                    +++|++++|+|+++||++|. .++. |.      
T Consensus       166 ~~~~~~~~~~a~~~l~~il~~~~~~~--------------------g~~~~~svLiGiv~G~v~a~~~~g~-d~------  218 (433)
T PRK11412        166 GKIQLPPFGLSVAVMCLVLAMIIFLP--------------------QRIARYSLLVGTIVGWILWAFCFPS-SH------  218 (433)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHhh--------------------hHHHHHHHHHHHHHHHHHHHHHhCC-Cc------
Confidence                 234577777777777766544                    68999999999999999975 4443 33      


Q ss_pred             CccccccccccCCCcccccccccccccc-cccchHHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhH
Q psy14449        385 ARTDVKLRILEDSSWFRVPYPGQWGTPT-VSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLG  463 (673)
Q Consensus       385 ~rtd~~~~~i~~apw~~~P~p~~~g~P~-f~~~~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGig  463 (673)
                             +.+.+++|..    ++||.|+ ||++.++.++..+++.+.|++||++|++|..+++.+++++++||+.+||++
T Consensus       219 -------~~v~~a~w~~----~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~  287 (433)
T PRK11412        219 -------SLSGELHWQW----FPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFM  287 (433)
T ss_pred             -------chhccCCcee----ecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHH
Confidence                   4567889953    4489995 999999999999999999999999999999988776678999999999999


Q ss_pred             HHHhhhcCCCCCccccccccceecccccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHh
Q psy14449        464 TVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSA  543 (673)
Q Consensus       464 silaGl~Gtg~g~Tt~seN~G~i~~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~fg~i~~~Gls~  543 (673)
                      |+++|+||+ .|+|+|+||+|++++|||+||++++++|+++++++++||+++++++||.||+||+++++|+++.++|+++
T Consensus       288 s~laglfg~-~p~tt~sqNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~  366 (433)
T PRK11412        288 TLITVPLAV-IPFSPFVSSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVF  366 (433)
T ss_pred             HHHHHhcCC-CCCCchhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999996 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCcceEEEehhhhhhhhhhhHhhhcc-ccccccccchhHHHHHHhccchhHHHHHHHHHhhcCCCCC
Q psy14449        544 LQYVDLNSSRNLYIIGFSMFFSLVLPKWMVHNA-DAIRTGSDIVDSILTVLLSTSILVGGMLGCLLDNLIPGTP  616 (673)
Q Consensus       544 L~~vdl~s~Rn~~IvG~sl~~Gl~~P~~~~~~p-~~~~tg~~~l~~~l~~llss~~~vg~l~aiiLd~~~p~t~  616 (673)
                      ++++|+| +||++|+|+|+.+|++..    ..| +.    .+++|+.++.+|+|++++|+++|++||+++|++|
T Consensus       367 l~~~~~~-~rn~~ivg~sl~~Glg~~----~~p~~~----~~~~P~~~~~~l~sgi~~g~l~AilLn~~~~~~~  431 (433)
T PRK11412        367 SQQITFT-ARNIYRLALPLFVGIFLM----ALPPVY----LQDLPLTLRPLLSNGLLVGILLAVLMENLIPWER  431 (433)
T ss_pred             HHhCCCC-cccchhhHHHHHHHhhHH----hCCHHH----HHHChHHHHHHHcCcHHHHHHHHHHHHhhcCccc
Confidence            9999998 799999999999999961    223 23    3456788999999999999999999999999744


No 4  
>PRK10720 uracil transporter; Provisional
Probab=100.00  E-value=1.6e-59  Score=518.52  Aligned_cols=374  Identities=23%  Similarity=0.383  Sum_probs=327.6

Q ss_pred             cccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhc-CCC---cc
Q psy14449        181 ITYGIDDVPPWYLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQNTFG-CRT---MG  256 (673)
Q Consensus       181 l~y~v~~~ppw~~~i~lGlQh~lam~~~~vv~Plil~~algl~~~~~~~~~lIs~~i~~sGI~TLLq~lfG-~rL---~G  256 (673)
                      ..|++||+|||.+.+++|+||+++|+++++++|+++    ++  ++       +.+++++|++|++|++++ .|+   ||
T Consensus         3 ~~~~~~~~~p~~~~~~lglQhvl~m~~~~i~~Pli~----gl--~~-------~~~l~~sGi~TliQ~~~~g~rlP~~~G   69 (428)
T PRK10720          3 RAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILF----HI--NP-------ATVLLFNGIGTLLYLFICKGKIPAYLG   69 (428)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc----CC--CH-------HHHHHHHHHHHHHHHHhccCccceEEe
Confidence            469999999999999999999999999999999987    33  22       237899999999999876 587   99


Q ss_pred             cchHH----------HHHHH-HH--HH-----HHHHHh---HHHHHHHhhCCcchhhHHHHhhhhhHHHHHHhhh-----
Q psy14449        257 HTYSE----------SLRSA-GY--VG-----WFSPSG---VVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAAS-----  310 (673)
Q Consensus       257 ~Sfa~----------~~~~i-Ga--Va-----ilg~~g---l~g~l~~~~pPlvig~~I~lIGLsl~~~~~~~~~-----  310 (673)
                      +||+.          +++.+ |+  ++     +++++.   .++++.|+|||.++|++++++|+++.+.+..+.+     
T Consensus        70 ~sfa~i~~~~~~~~~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~~g~~~~~  149 (428)
T PRK10720         70 SSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAE  149 (428)
T ss_pred             CcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhhccccCCC
Confidence            99994          34555 66  33     445541   1568999999999999999999999999887642     


Q ss_pred             ------ccccchhhhhHHHHHHhhhccccccCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Q psy14449        311 ------KHWGISVSTIIMLTVFSQCLSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTEALPKGHP  384 (673)
Q Consensus       311 ------~~~~Ia~~sl~lil~~~~yl~~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiigwl~a~iLg~~~~~p~~~~  384 (673)
                            .++.++++++++++.++++.|                    +++|++++|+|+++||++++.+|..|+      
T Consensus       150 ~~~~~~~~~~lalv~l~iil~~~~~~k--------------------g~~~~~~iLigIvvG~ila~~lG~~d~------  203 (428)
T PRK10720        150 GQTPDSKTIIISMVTLAVTVLGSVLFR--------------------GFLAIIPILIGVLVGYALSFAMGMVDT------  203 (428)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHhc--------------------cHHHHhHHHHHHHHHHHHHHHhcCCCH------
Confidence                  357788888888887776555                    578889999999999999999987654      


Q ss_pred             CccccccccccCCCcccccccccccccccccchHHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhHH
Q psy14449        385 ARTDVKLRILEDSSWFRVPYPGQWGTPTVSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGT  464 (673)
Q Consensus       385 ~rtd~~~~~i~~apw~~~P~p~~~g~P~f~~~~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGigs  464 (673)
                             +.+.+++|+.+|.   |+.|+||+..++.++..+++.++|++||+.++++..+++..+++++||++.+||++|
T Consensus       204 -------~~v~~a~~~~lP~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlat  273 (428)
T PRK10720        204 -------TPIIEAHWFALPT---FYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLST  273 (428)
T ss_pred             -------HHhhcCccccCCC---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHH
Confidence                   4666789999985   577899999999999999999999999999999998876544578999999999999


Q ss_pred             HHhhhcCCCCCccccccccceecccccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhh
Q psy14449        465 VLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSAL  544 (673)
Q Consensus       465 ilaGl~Gtg~g~Tt~seN~G~i~~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~fg~i~~~Gls~L  544 (673)
                      +++|+||+ +|+|+|+||+|+++.||++||++++++++++++++++||+++++++||.||+||+.+++||++...|++.+
T Consensus       274 ii~glfG~-~p~tty~en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i~~fg~i~~~Gi~~l  352 (428)
T PRK10720        274 VISGFFGS-TPNTTYGENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSLLLYGVIGASGIRVL  352 (428)
T ss_pred             HHHHhcCC-CCccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999996 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             --hhccCCCCcceEEEehhhhhhhhhhhHhhhccccccccccchhHHHHHHhccchhHHHHHHHHHhhcCCCCCccccc
Q psy14449        545 --QYVDLNSSRNLYIIGFSMFFSLVLPKWMVHNADAIRTGSDIVDSILTVLLSTSILVGGMLGCLLDNLIPGTPEERGL  621 (673)
Q Consensus       545 --~~vdl~s~Rn~~IvG~sl~~Gl~~P~~~~~~p~~~~tg~~~l~~~l~~llss~~~vg~l~aiiLd~~~p~t~~erg~  621 (673)
                        +++|++++||++|+|+|+++|++....                 .++.++.+++..|+++|++||.++|..+|+|+-
T Consensus       353 ~~~~~~~~~~~n~~i~~~~l~~g~~~~~~-----------------~~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~~~  414 (428)
T PRK10720        353 IESKVDYNKAQNLILTSVILIIGVSGAKV-----------------NIGAAELKGMALATIVGIGLSLIFKLISKLRPE  414 (428)
T ss_pred             HHccCCCCcccchhHHHHHHHHHHHHHHH-----------------HHHHHhcCcHHHHHHHHHHHHHHhcccccccCC
Confidence              789999999999999999999986321                 157889999999999999999999987777764


No 5  
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00  E-value=8.6e-59  Score=512.65  Aligned_cols=372  Identities=24%  Similarity=0.366  Sum_probs=319.9

Q ss_pred             CcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHH-HhcCCC---c
Q psy14449        180 DITYGIDDVPPWYLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQN-TFGCRT---M  255 (673)
Q Consensus       180 ~l~y~v~~~ppw~~~i~lGlQh~lam~~~~vv~Plil~~algl~~~~~~~~~lIs~~i~~sGI~TLLq~-lfG~rL---~  255 (673)
                      +..|++||+||+++++++|+||+++|+++++++|+++    |+  +++       .+++++||+|++|+ .+|+|+   +
T Consensus        18 ~~~~~~d~~~p~~~~~~~GlQh~lam~~~~v~~Plil----gl--~~~-------~tl~~sGi~TllQ~~~~G~rlP~v~   84 (429)
T TIGR03616        18 HHPVAPDERLPAAQTIVMGLQHAVAMFGATVLMPLLM----GF--DPN-------LTILMSGIGTLLFFLITGGRVPSYL   84 (429)
T ss_pred             CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh----CC--CHh-------HHHHHHHHHHHHHHHHhCCCceeEE
Confidence            3679999999999999999999999999999999997    33  321       57999999999997 589998   9


Q ss_pred             ccchHH-----------------HHHHH-HH--HH-----HHHHHhHH---HHHHHhhCCcchhhHHHHhhhhhHHHHHH
Q psy14449        256 GHTYSE-----------------SLRSA-GY--VG-----WFSPSGVV---GVLLKYVTPLTIVPTVSLVGLSLFENAAE  307 (673)
Q Consensus       256 G~Sfa~-----------------~~~~i-Ga--Va-----ilg~~gl~---g~l~~~~pPlvig~~I~lIGLsl~~~~~~  307 (673)
                      |+||+.                 +++.+ |+  ++     +++++.+.   +++.|+|||++.|+++++||+++.+.+.+
T Consensus        85 G~sf~f~~~~~~~~~~~~~~~~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~  164 (429)
T TIGR03616        85 GSSAAFVGAVIAATGYNGQGTNPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVK  164 (429)
T ss_pred             cCcHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999883                 12333 55  33     45665433   88999999999999999999999999988


Q ss_pred             hhh----ccccchhhhhHHHHHHhhhccccccCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhhcccCCCCC
Q psy14449        308 AAS----KHWGISVSTIIMLTVFSQCLSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTEALPKGH  383 (673)
Q Consensus       308 ~~~----~~~~Ia~~sl~lil~~~~yl~~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiigwl~a~iLg~~~~~p~~~  383 (673)
                      +.+    .+| .++++++.++++.++.|                    +++|++++|+|+++||++|++++..  +  +.
T Consensus       165 ~~~~~~~~~~-~al~tl~~i~l~~l~~~--------------------~~l~~~avLiGivvG~iva~~l~~~--~--g~  219 (429)
T TIGR03616       165 SVSASGFDSW-MAVLTILCIGAVAVFTR--------------------GMLQRLLILVGLIAAYLAYFILTNV--F--GL  219 (429)
T ss_pred             hccccccccH-HHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHhhh--c--CC
Confidence            754    234 57777777777766554                    6889999999999999999987521  0  11


Q ss_pred             CCccccccccccCCCcccccccccccccccccchHHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhH
Q psy14449        384 PARTDVKLRILEDSSWFRVPYPGQWGTPTVSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLG  463 (673)
Q Consensus       384 ~~rtd~~~~~i~~apw~~~P~p~~~g~P~f~~~~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGig  463 (673)
                      .++.|  .+.+.++||+.+|   +|+.|.||++.++.++..++++++|++||+.++++..+++.+  ++++|++.+||++
T Consensus       220 ~~~vd--~s~v~~a~~~~lP---~~~~p~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~~~~~~--~~i~r~l~adGl~  292 (429)
T TIGR03616       220 GKAVD--FSPISQAAWFGLP---NFHTPVFNANAMLLIAPVALILVAENLGHFKAVAGMTGRNLD--PYMGRAFVGDGLA  292 (429)
T ss_pred             Ccccc--CcccccCccccCC---cCCCceEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC--chhccchhhhhHH
Confidence            12334  4677889999999   578899999999999999999999999999999999886543  3699999999999


Q ss_pred             HHHhhhcCCCCCccccccccceecccccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHh
Q psy14449        464 TVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSA  543 (673)
Q Consensus       464 silaGl~Gtg~g~Tt~seN~G~i~~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~fg~i~~~Gls~  543 (673)
                      |+++|++|+ +|+|+|+||+|+++.||++||++++.+++++++++++||+++++++||.||+||+++++|+++...|+|.
T Consensus       293 t~~agl~g~-~p~tt~~en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~~  371 (429)
T TIGR03616       293 TMLSGSVGG-TGVTTYAENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGARI  371 (429)
T ss_pred             HHHHHhcCC-CCCcceeeeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999996 9999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             h--hhccCCCCcceEEEehhhhhhhhhhhHhhhccccccccccchhHHHHHHhccchhHHHHHHHHHhhcCCC
Q psy14449        544 L--QYVDLNSSRNLYIIGFSMFFSLVLPKWMVHNADAIRTGSDIVDSILTVLLSTSILVGGMLGCLLDNLIPG  614 (673)
Q Consensus       544 L--~~vdl~s~Rn~~IvG~sl~~Gl~~P~~~~~~p~~~~tg~~~l~~~l~~llss~~~vg~l~aiiLd~~~p~  614 (673)
                      +  +++|+|++||++|+|+|+.+|++.-                 ...++.+++|++.+|+++|++||.++|+
T Consensus       372 l~~~~~d~~~~rn~~ivg~sl~~g~g~~-----------------~~~~~~~~~s~i~~~~~~ai~Ln~~l~~  427 (429)
T TIGR03616       372 WVQNKVDLTQNGNLIMVAVTLVLGAGDF-----------------ALTIGAFTLGGIGTATFGAIVLNALLNR  427 (429)
T ss_pred             HHhccCCcCccceeehhHHHHHHHhHHH-----------------HHHHHHHhhCcHHHHHHHHHHHHHhcCC
Confidence            8  7889998899999999999999851                 1146889999999999999999999994


No 6  
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00  E-value=8.6e-58  Score=503.55  Aligned_cols=370  Identities=28%  Similarity=0.472  Sum_probs=327.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCC---C---cccchHH
Q psy14449        188 VPPWYLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQNTFGCR---T---MGHTYSE  261 (673)
Q Consensus       188 ~ppw~~~i~lGlQh~lam~~~~vv~Plil~~algl~~~~~~~~~lIs~~i~~sGI~TLLq~lfG~r---L---~G~Sfa~  261 (673)
                      +|||++.+++|+||+++|+++++++|++++.++ +  +++++..++|++++++|++|++|++++++   +   ||+||+.
T Consensus         1 ~~~~~~~~~lglQh~l~~~~~~i~~p~iv~~~~-l--~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~   77 (415)
T TIGR00801         1 RPPFLQTLVLGLQHLLAMFGGTVLVPLLVGLAP-L--SAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAF   77 (415)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-C--CHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHH
Confidence            579999999999999999999999999999986 5  55789999999999999999999987764   3   9999883


Q ss_pred             -----------HHHHH-HH--HH-----HHHHH--h-HHHHHHHhhCCcchhhHHHHhhhhhHHHHHHhhh---------
Q psy14449        262 -----------SLRSA-GY--VG-----WFSPS--G-VVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAAS---------  310 (673)
Q Consensus       262 -----------~~~~i-Ga--Va-----ilg~~--g-l~g~l~~~~pPlvig~~I~lIGLsl~~~~~~~~~---------  310 (673)
                                 +++++ |+  ++     +++++  + .++++.|+|||.+.+++++++|+++.+.+..+..         
T Consensus        78 i~~~~~~~~~~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~  157 (415)
T TIGR00801        78 VSPMIAIGSGLGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSA  157 (415)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCccccc
Confidence                       24555 55  33     44443  2 3567899999999999999999999999988752         


Q ss_pred             -----ccccchhhhhHHHHHHhhhccccccCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q psy14449        311 -----KHWGISVSTIIMLTVFSQCLSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTEALPKGHPA  385 (673)
Q Consensus       311 -----~~~~Ia~~sl~lil~~~~yl~~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiigwl~a~iLg~~~~~p~~~~~  385 (673)
                           +++.+++.++++++++.++.|                    +++|++++|+++++||++++.+|.+|.       
T Consensus       158 ~~~~~~~~~vg~~~l~~~vl~~~~~~--------------------g~~~~~aiLigiv~g~i~a~~lg~~~~-------  210 (415)
T TIGR00801       158 TYGSLENLGVAFVVLALIILLNRFGK--------------------GFLKSISILIGILVGYILALFMGIVDF-------  210 (415)
T ss_pred             ccCchhhHHHHHHHHHHHHHHHHHHh--------------------hHHHHHHHHHHHHHHHHHHHHcCCccc-------
Confidence                 346788888887777776554                    578899999999999999999987664       


Q ss_pred             ccccccccccCCCcccccccccccccccccchHHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhHHH
Q psy14449        386 RTDVKLRILEDSSWFRVPYPGQWGTPTVSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTV  465 (673)
Q Consensus       386 rtd~~~~~i~~apw~~~P~p~~~g~P~f~~~~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGigsi  465 (673)
                            +.+.++||+.+|.+++|| |+||+..+..++..++++++|++|++.++++.+|++.++++++||++.+||++|+
T Consensus       211 ------~~v~~~~~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i  283 (415)
T TIGR00801       211 ------SPVIDAPWFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATL  283 (415)
T ss_pred             ------hhhccCcccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHH
Confidence                  345678999999999998 7999999999999999999999999999999999766546789999999999999


Q ss_pred             HhhhcCCCCCccccccccceecccccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhh
Q psy14449        466 LAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSALQ  545 (673)
Q Consensus       466 laGl~Gtg~g~Tt~seN~G~i~~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~fg~i~~~Gls~L~  545 (673)
                      ++|++|+ +|+|+|+||+|+++.||++||++.+++++++++++++||+++++++||.||+||+++++|+++...|++.++
T Consensus       284 ~aglfG~-~p~t~~sen~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~~l~  362 (415)
T TIGR00801       284 LAGLFGG-FPNTTFAQNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIRILI  362 (415)
T ss_pred             HHHhcCC-CCCcchhhhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999996 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCcceEEEehhhhhhhhh---hhHhhhccccccccccchhHHHHHHhccchhHHHHHHHHHhhc
Q psy14449        546 YVDLNSSRNLYIIGFSMFFSLVL---PKWMVHNADAIRTGSDIVDSILTVLLSTSILVGGMLGCLLDNL  611 (673)
Q Consensus       546 ~vdl~s~Rn~~IvG~sl~~Gl~~---P~~~~~~p~~~~tg~~~l~~~l~~llss~~~vg~l~aiiLd~~  611 (673)
                      +.|+|++||.+|+|+|+++|+++   |+++++.|                +++|++.+|+++|++||.+
T Consensus       363 ~~~~~~~r~~~i~~~s~~~g~~~~~~p~~~~~~p----------------~~~~g~~~g~~~ai~Ln~~  415 (415)
T TIGR00801       363 RNKLDNRRNRNIIAASVGLGLGVTGVPDIFGNFP----------------LLLSGIALAGIVAILLNLI  415 (415)
T ss_pred             hCccCcccceehHHHHHHHHHHHhccHHHHhhCc----------------hhcccHHHHHHHHHHHhcC
Confidence            99999889999999999999997   55554433                8899999999999999964


No 7  
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00  E-value=1.7e-55  Score=484.15  Aligned_cols=368  Identities=29%  Similarity=0.511  Sum_probs=324.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHH----HhcCCC---cccchHH---------
Q psy14449        198 ALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQN----TFGCRT---MGHTYSE---------  261 (673)
Q Consensus       198 GlQh~lam~~~~vv~Plil~~algl~~~~~~~~~lIs~~i~~sGI~TLLq~----lfG~rL---~G~Sfa~---------  261 (673)
                      |+||+++|+++++++|+++++++|+  |+++...+++++++++||+|++|+    .+|+|+   +|+|++.         
T Consensus         1 ~~Qh~l~~~~~~i~~p~i~~~a~gl--~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~   78 (406)
T TIGR03173         1 GLQHVLAMYAGAVAVPLIVGGALGL--SAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGA   78 (406)
T ss_pred             CccchHHHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhh
Confidence            5899999999999999999998766  456789999999999999999997    578998   8888772         


Q ss_pred             --HHHHH-HH--HH---HHHHHhHHHHHHHhhCCcchhhHHHHhhhhhHHHHHHhhh-----------ccccchhhhhHH
Q psy14449        262 --SLRSA-GY--VG---WFSPSGVVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAAS-----------KHWGISVSTIIM  322 (673)
Q Consensus       262 --~~~~i-Ga--Va---ilg~~gl~g~l~~~~pPlvig~~I~lIGLsl~~~~~~~~~-----------~~~~Ia~~sl~l  322 (673)
                        +++++ |+  ++   .+.+.++++++.|+|||.++|.+++++|+++.+.+..+..           +++.+++.++++
T Consensus        79 ~~~~~~~~ga~~v~Gii~illg~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~~~~~~~~l~l~~l~~  158 (406)
T TIGR03173        79 GGGLGAIFGAVIVAGLFVILLAPFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDFGSPQNLGLALLTLVI  158 (406)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchHHHHHHHHHHHH
Confidence              34555 55  33   3334478999999999999999999999999999887652           345677777777


Q ss_pred             HHHHhhhccccccCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhhcccCCCCCCCccccccccccCCCcccc
Q psy14449        323 LTVFSQCLSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTEALPKGHPARTDVKLRILEDSSWFRV  402 (673)
Q Consensus       323 il~~~~yl~~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiigwl~a~iLg~~~~~p~~~~~rtd~~~~~i~~apw~~~  402 (673)
                      ++++.++.|                    +++|++++|++++++|++++.++..|.             +.+.++||+.+
T Consensus       159 ~il~~~~~~--------------------~~~~~~aiLi~ivvg~iva~~~g~~~~-------------~~i~~~~~~~~  205 (406)
T TIGR03173       159 ILLLNRFGK--------------------GFLRSIAVLLGLVVGTIVAAALGMVDF-------------SGVAEAPWFAL  205 (406)
T ss_pred             HHHHHHHhh--------------------hHHHHhHHHHHHHHHHHHHHHhcCCCc-------------hhhccCCeeeC
Confidence            766665433                    578889999999999999999987654             34667899999


Q ss_pred             cccccccccccccchHHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhHHHHhhhcCCCCCccccccc
Q psy14449        403 PYPGQWGTPTVSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLAGLWGSGNGTNTFGEN  482 (673)
Q Consensus       403 P~p~~~g~P~f~~~~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGigsilaGl~Gtg~g~Tt~seN  482 (673)
                      |.|++|+.|+||+..+..+++.++++++|++|++.++++..|++. +++++||++.+||++|+++|++|+ +++|+|+||
T Consensus       206 P~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a~~~~~g~~~-~~~~~~~~l~~~Gi~~i~aglfG~-~p~t~~~~~  283 (406)
T TIGR03173       206 PTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITGRPI-TEKDLAGGLRADGLGSALGGLFNT-FPYTSFSQN  283 (406)
T ss_pred             CCCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CchhccchHHhccHHHHHHHHhCC-CCCcchhhh
Confidence            999999999999999999999999999999999999999988654 357899999999999999999995 999999999


Q ss_pred             cceecccccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhhccCCCCcceEEEehhh
Q psy14449        483 VGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSALQYVDLNSSRNLYIIGFSM  562 (673)
Q Consensus       483 ~G~i~~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~fg~i~~~Gls~L~~vdl~s~Rn~~IvG~sl  562 (673)
                      +|+++.||++||++.+++++++++++++||+++++++||.||+||+++++|+++...|++.+++.|+|++||++|+|+|+
T Consensus       284 ~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~~l~~~~~~~~rn~~i~g~~~  363 (406)
T TIGR03173       284 VGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIRILSKVDFDRRRNLLIVAVSL  363 (406)
T ss_pred             HHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcceehhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888999999999


Q ss_pred             hhhhh---hhhHhhhccccccccccchhHHHHHHhccchhHHHHHHHHHhhcCC
Q psy14449        563 FFSLV---LPKWMVHNADAIRTGSDIVDSILTVLLSTSILVGGMLGCLLDNLIP  613 (673)
Q Consensus       563 ~~Gl~---~P~~~~~~p~~~~tg~~~l~~~l~~llss~~~vg~l~aiiLd~~~p  613 (673)
                      .+|++   +|++++           .+|+.++.+++|++.+|+++|++||+++|
T Consensus       364 ~~g~~~~~~p~~~~-----------~~p~~~~~~~~~~~~~g~~~ai~l~~~~p  406 (406)
T TIGR03173       364 GLGLGPTVVPEFFS-----------QLPAWAQTLFSSGIAVGAISAILLNLLFN  406 (406)
T ss_pred             HHHHHHHhhHHHHH-----------HChHHHHHHHhCcHHHHHHHHHHHHhhcC
Confidence            99996   455444           46677899999999999999999999987


No 8  
>PF00860 Xan_ur_permease:  Permease family;  InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include:  Xanthine permease PbuX, involved in cellualar xanthine transport []  Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease []  Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C []   These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00  E-value=1.3e-55  Score=482.60  Aligned_cols=343  Identities=32%  Similarity=0.566  Sum_probs=266.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHHH-hcCCC---cccchHH------
Q psy14449        192 YLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQNT-FGCRT---MGHTYSE------  261 (673)
Q Consensus       192 ~~~i~lGlQh~lam~~~~vv~Plil~~algl~~~~~~~~~lIs~~i~~sGI~TLLq~l-fG~rL---~G~Sfa~------  261 (673)
                      +|++++|+||+++|+++++++|.++++++|+   +.+...+++++++++|++|++|++ +|+|+   +|+|++.      
T Consensus         1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~---~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~   77 (389)
T PF00860_consen    1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGL---DADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMI   77 (389)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHTTTS--------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHG
T ss_pred             CccHHHHHHHHHHHHHHHHHhHHHHhhcccc---cchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhc
Confidence            4789999999999999999999999998765   234569999999999999999999 89998   7877662      


Q ss_pred             ----------HHHHH-HH--HH-----HHHHHhHHHHHHHhhCCcchhhHHHHhhhhhHHHHHHhhhccc----------
Q psy14449        262 ----------SLRSA-GY--VG-----WFSPSGVVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAASKHW----------  313 (673)
Q Consensus       262 ----------~~~~i-Ga--Va-----ilg~~gl~g~l~~~~pPlvig~~I~lIGLsl~~~~~~~~~~~~----------  313 (673)
                                +++++ |+  ++     ++++++.++++.|+|||.+.+++++++|+++.+.+.++...++          
T Consensus        78 ~~g~~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~~~~~~~~  157 (389)
T PF00860_consen   78 VIGMAESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNPDGLLVGD  157 (389)
T ss_dssp             GG-----HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---BTT-B---
T ss_pred             ccccccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccccccccccc
Confidence                      23444 55  33     7788899999999999999999999999999999998875443          


Q ss_pred             ----cchhhhhHHHHHHhhhccccccCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhhcccCCCCCCCcccc
Q psy14449        314 ----GISVSTIIMLTVFSQCLSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTEALPKGHPARTDV  389 (673)
Q Consensus       314 ----~Ia~~sl~lil~~~~yl~~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiigwl~a~iLg~~~~~p~~~~~rtd~  389 (673)
                          .++..++...+.+..+.+                    +++|++++++|++++|+++++++..|+           
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~ailigi~~g~i~~~~~g~~~~-----------  206 (389)
T PF00860_consen  158 GKNLGLAVLTLLFILLLSLFLK--------------------GFLRKGAILIGIIAGWIVAAILGVVDF-----------  206 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSS--------------------TTTTTHHHHHHHHHHHHHHHHHHHTTS-----------
T ss_pred             ccccccccccchhhhhhhhhhh--------------------hhcccccchhhhhhhhhhhhccccccc-----------
Confidence                345555555555555443                    567889999999999999999998776           


Q ss_pred             cccc-ccCCCcccccccccccccccccchHHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhHHHHhh
Q psy14449        390 KLRI-LEDSSWFRVPYPGQWGTPTVSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLAG  468 (673)
Q Consensus       390 ~~~~-i~~apw~~~P~p~~~g~P~f~~~~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGigsilaG  468 (673)
                        +. +.++||+++|+|++||+|.|++..++.++..++++++|++||+++++|.++++.+++++++|++.+||++|+++|
T Consensus       207 --~~~~~~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~g  284 (389)
T PF00860_consen  207 --SPSVSSAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAG  284 (389)
T ss_dssp             --SH-HHHS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHH
T ss_pred             --CcccccccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeech
Confidence              34 788999999999999999999999999999999999999999999999999877768899999999999999999


Q ss_pred             hcCCCCCccccccccceecccccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14449        469 LWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSALQYVD  548 (673)
Q Consensus       469 l~Gtg~g~Tt~seN~G~i~~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~fg~i~~~Gls~L~~vd  548 (673)
                      +||+ +|+|+|+||+|+++.||++|||+.+.+++++++++++||+++++++||.||+||++++++|++++.|++++++.|
T Consensus       285 l~G~-~~~t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~i~~~gi~~i~~~~  363 (389)
T PF00860_consen  285 LFGT-SPTTTYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGMIMMSGIRNIDWVD  363 (389)
T ss_dssp             HHT----EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhcC-CCCccccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhHhheecc
Confidence            9997 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceEEEehhhhhhhhhhhH
Q psy14449        549 LNSSRNLYIIGFSMFFSLVLPKW  571 (673)
Q Consensus       549 l~s~Rn~~IvG~sl~~Gl~~P~~  571 (673)
                      +||.||.+++|+++.+|++++.+
T Consensus       364 ~~~~r~~~iv~~~l~~g~~i~~~  386 (389)
T PF00860_consen  364 LDSARNAFIVGLSLPLGLSIAFG  386 (389)
T ss_dssp             S-SHHHHHHHHHHHHHHHH----
T ss_pred             cCccccHHHHHHhHHHHHHHhcc
Confidence            99999999999999999998654


No 9  
>KOG1292|consensus
Probab=100.00  E-value=1.4e-48  Score=420.66  Aligned_cols=314  Identities=23%  Similarity=0.305  Sum_probs=263.2

Q ss_pred             hHHHhhhcCCCeeeeehh-------hhHHhHhhhccCceeeceeehhcccchHhHHHhhccceeeehhhhhccchhhhhh
Q psy14449          8 TELNMENLDPPGTVHSSV-------SVVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAASKHWGISSLRQKILYFSTIIM   80 (673)
Q Consensus         8 ~~~~m~~~~g~~~~~~~~-------g~~g~~~r~i~Pl~i~P~v~l~gl~l~~~~~~~~~~~w~i~~~~~~~~~~~~~~l   80 (673)
                      -+++||++|||++|+|++       |+||+++||++|++++|+++|+|||+|+.+++++++|||||++        ++++
T Consensus       110 ~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l~~~~~~~~~~~weI~l~--------~~ll  181 (510)
T KOG1292|consen  110 FQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGLFQDGFPKLGKHWEISLP--------EILL  181 (510)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhhHHhhhhhhhhheeecHH--------HHHH
Confidence            468999999999999985       8999999999999999999999999999999999999999995        9999


Q ss_pred             hhhhhhccCCcccCCcccccCCCceEEeeccccccceehccccCCCCCCCcccccCCCCCccccccchhHHHHHhhhhhc
Q psy14449         81 LTVFSQCLSEVKLPGINYSKEEGFKIVWFNLFKLFPVLGLVDQNGHSKSSEKIEDRPDITYGIDDVPPWYLCIFMALQVL  160 (673)
Q Consensus        81 ~vlfsqyl~~~~~p~~~~~~~~~~~~~~~~~f~~fpvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~lt~~~~  160 (673)
                      +++|+||. +.        ++++++.+|.++|+||||+                        ++++++|++|++||  ++
T Consensus       182 li~fsqy~-~~--------~~~~~~~~~~~if~~f~vl------------------------l~i~ivW~~~~iLT--~t  226 (510)
T KOG1292|consen  182 LILFSQYA-SL--------PKKGFGSRRIQIFSRFPVL------------------------LAIAIVWLYCFILT--IT  226 (510)
T ss_pred             HHHHHHhh-hc--------ccccccccccchHhhccHH------------------------HHHHHHHHHHHHHH--hc
Confidence            99999992 11        2445677889999999999                        99999999999999  99


Q ss_pred             cccCCCCCCCCCcccCCCCC-----cccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cccCCCCCchhh
Q psy14449        161 GLVDQNGHSKSSEKIEDRPD-----ITYGIDDVPPWYLCIFMALQHYLTMIGAIVSIPFILTP-----ALCMREDDPARG  230 (673)
Q Consensus       161 ~~~~~~~~~~~~~~r~~~~~-----l~y~v~~~ppw~~~i~lGlQh~lam~~~~vv~Plil~~-----algl~~~~~~~~  230 (673)
                      |+||++++.++.+||+|++.     .|++++.+..|+ ...+-..|+++|+++.++.-+ .+-     ..+++.++++|.
T Consensus       227 gay~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG-~P~f~~~~~f~m~aa~~va~i-ES~G~y~a~ar~~~a~ppP~  304 (510)
T KOG1292|consen  227 GAYPYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQWG-PPTFSAGLVFAMMAASLVAMI-ESTGDYIACARLSSATPPPP  304 (510)
T ss_pred             cccCCCccccCCcccccHhhhhccCCceeecCCCccC-CCcccHHHHHHHHHHHHHHHH-HhcchHHHHHHHhcCCCCCh
Confidence            99999999999999999976     478888888887 566788899999999988755 211     123455678899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcc-cchHHHH-----HHHHH-----HH--HHHHHhHHHHHHHh---hC-Ccchh--
Q psy14449        231 HIISTMIFVTAIVTFIQNTFGCRTMG-HTYSESL-----RSAGY-----VG--WFSPSGVVGVLLKY---VT-PLTIV--  291 (673)
Q Consensus       231 ~lIs~~i~~sGI~TLLq~lfG~rL~G-~Sfa~~~-----~~iGa-----Va--ilg~~gl~g~l~~~---~p-Plvig--  291 (673)
                      +++||++.++|+|++|.++||++ .| ++++|++     +.+|+     ++  +|.++|++||+.++   +| |++.|  
T Consensus       305 ~~inRgi~~eGig~lL~gl~G~g-tG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~  383 (510)
T KOG1292|consen  305 SVLNRGIGWEGIGSLLAGLFGTG-TGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLL  383 (510)
T ss_pred             hhhhhhhhhhhHHHHHHHhhCCC-ccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            99999999999999999999998 55 4677865     33366     33  55555555555554   56 66654  


Q ss_pred             ----hHHHHhhhhhHHHHHHhhhccccchhhhhHHHHHHhhhccccccCccccccccccchhhhhhhhhhHHHHH--HHH
Q psy14449        292 ----PTVSLVGLSLFENAAEAASKHWGISVSTIIMLTVFSQCLSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLT--IMI  365 (673)
Q Consensus       292 ----~~I~lIGLsl~~~~~~~~~~~~~Ia~~sl~lil~~~~yl~~~~~p~p~~~~~~~~~~~~~~~~~~~avLig--iii  365 (673)
                          .++..+|||++|+++.|++||.+|.++++++.+.++||+++++-         ++|++...+...+.+++.  +.+
T Consensus       384 c~~~~mv~avgLSnLQf~dlns~RNl~IlG~Sif~gLsip~yF~~~~~---------~v~Tg~~~~d~ilnvll~~~m~V  454 (510)
T KOG1292|consen  384 CILFGMVGAVGLSNLQFVDLNSSRNLFILGFSIFLGLSIPQYFEQYPG---------PVHTGNGWFDDILNVLLSSRMLV  454 (510)
T ss_pred             HHHHHHHHHHhhhhheeeccccccchhhhhHHHHHhccHHHHHHhCCC---------ccccCcHHHHHHHHHHhhHHHHH
Confidence                47899999999999999999999999999999999999997632         355666678888888887  788


Q ss_pred             HHHHHHHhhhc
Q psy14449        366 MWGICGLLTLT  376 (673)
Q Consensus       366 gwl~a~iLg~~  376 (673)
                      |-++|.+|.-+
T Consensus       455 ggi~A~~LDnt  465 (510)
T KOG1292|consen  455 GGILAFILDNT  465 (510)
T ss_pred             HHHHhhhcccc
Confidence            88999998643


No 10 
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]
Probab=99.92  E-value=1.5e-23  Score=228.39  Aligned_cols=322  Identities=14%  Similarity=0.191  Sum_probs=249.1

Q ss_pred             CcccccCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCC----
Q psy14449        180 DITYGIDDVPP-WYLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQNTFGCRT----  254 (673)
Q Consensus       180 ~l~y~v~~~pp-w~~~i~lGlQh~lam~~~~vv~Plil~~algl~~~~~~~~~lIs~~i~~sGI~TLLq~lfG~rL----  254 (673)
                      |.+|+++|+.. .++|++.|+.++++|.+.++++|.+++++ ++  +   ...+.-++++.++++|++++++++..    
T Consensus         7 ~~~F~l~~~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~a-g~--~---~~av~~AT~l~a~~gs~~mgl~An~P~ala   80 (436)
T COG2252           7 DRFFKLKEHGTTVRTEVIAGLTTFLTMAYIVFVNPQILGAA-GM--P---VGAVFVATCLAAAIGSIAMGLYANLPIALA   80 (436)
T ss_pred             HHHhCccccCchHHHHHHHHHHHHHHHHHhheecHHHHHhc-CC--C---chhHHHHHHHHHHHHHHHHHHHHcCchhhc
Confidence            45789998886 88999999999999999999999999987 33  2   57889999999999999999999864    


Q ss_pred             --ccc--chHH--------HHHHH-HH--HH-----HHHHHhHHHHHHHhhC-Cc------chhhHHHHhhhhhHHHHHH
Q psy14449        255 --MGH--TYSE--------SLRSA-GY--VG-----WFSPSGVVGVLLKYVT-PL------TIVPTVSLVGLSLFENAAE  307 (673)
Q Consensus       255 --~G~--Sfa~--------~~~~i-Ga--Va-----ilg~~gl~g~l~~~~p-Pl------vig~~I~lIGLsl~~~~~~  307 (673)
                        ||-  .|+.        .+|++ |+  ++     +++++++++++.+.+| ++      .+|.+++++|++..+..+.
T Consensus        81 pgmglnAfFaftvv~~~gi~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia~IgL~~~Givv~  160 (436)
T COG2252          81 PGMGLNAFFAFTVVLGMGLSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIALIGLKNAGIVVA  160 (436)
T ss_pred             chhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhCCeEEe
Confidence              332  3443        24666 66  44     7789999999999999 32      6789999999998887665


Q ss_pred             hhhc----------cccchhhhhHHHHHHhhhccccccCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhhcc
Q psy14449        308 AASK----------HWGISVSTIIMLTVFSQCLSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTE  377 (673)
Q Consensus       308 ~~~~----------~~~Ia~~sl~lil~~~~yl~~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiigwl~a~iLg~~~  377 (673)
                      |.+.          .+..+.+.+++++.+-  -+++                      ..+++++|+...++++++|...
T Consensus       161 ~~~tlv~LG~~~~p~vll~i~G~~l~~~L~--~~~i----------------------~Gaili~i~~~t~~g~~~g~~~  216 (436)
T COG2252         161 NPATLVALGDFTSPGVLLAILGLLLIIVLV--SRKI----------------------KGAILIGILVTTILGIILGIDV  216 (436)
T ss_pred             cCcceEEeecCCCchHHHHHHHHHHHHHHH--Hhhc----------------------cHhhhHHHHHHHHHHHHhcccc
Confidence            5432          3455666666666553  2322                      2799999999999999998653


Q ss_pred             cCCCCCCCccccccccccCCCccccccccccccc--ccccchHHHHHHHHHHhhccccchHHHHhchhCCCC--CCCccc
Q psy14449        378 ALPKGHPARTDVKLRILEDSSWFRVPYPGQWGTP--TVSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPP--PPVHAI  453 (673)
Q Consensus       378 ~~p~~~~~rtd~~~~~i~~apw~~~P~p~~~g~P--~f~~~~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~--~~~~~i  453 (673)
                      .+ .+          .....|.. .|..++.+..  ...+..+...++..+++.+|++|++.++++.++...  .+.+++
T Consensus       217 ~~-~~----------~~~~~p~~-~~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~  284 (436)
T COG2252         217 HF-GG----------LVGAPPSL-SPIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRI  284 (436)
T ss_pred             cc-cc----------cccCCCCc-cchhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCcccc
Confidence            21 10          01111111 1211222221  122445557788899999999999999999999633  235699


Q ss_pred             ccchhhhhhHHHHhhhcCCCCCccccccccceecccccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHH
Q psy14449        454 NRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMF  533 (673)
Q Consensus       454 ~Rgi~~dGigsilaGl~Gtg~g~Tt~seN~G~i~~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~f  533 (673)
                      +|.+.+|++++++++++|| +++|+|.|+++.++..+++....+..+.+|++.+.+.|    ++..+|..+.++++++. 
T Consensus       285 ~~al~~D~v~t~~ga~~Gt-S~~t~yIESaaGva~GgrTGltavv~g~lFl~~lf~~P----l~~~vP~~AtapaLi~v-  358 (436)
T COG2252         285 GKALLADSVATVVGALFGT-STVTAYIESAAGVAAGGRTGLTAVVTGLLFLLSLFFSP----LAALVPGYATAPALIIV-  358 (436)
T ss_pred             chHHHHhHHHHHHHHhcCC-cchhhhhhcccccccccccccHHHHHHHHHHHHHHHHH----HHHhCcHhhhhHHHHHH-
Confidence            9999999999999999998 99999999999999999999999999999999988887    99999999999999984 


Q ss_pred             HHHHHHHHHhhhhccCCCC
Q psy14449        534 GMIAAFGLSALQYVDLNSS  552 (673)
Q Consensus       534 g~i~~~Gls~L~~vdl~s~  552 (673)
                      |.++.   ++++++||+|.
T Consensus       359 G~lM~---~~v~~id~~d~  374 (436)
T COG2252         359 GALML---SSVKQIDWSDF  374 (436)
T ss_pred             HHHHH---hhhccCCchhh
Confidence            66664   55667888763


No 11 
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.42  E-value=5.5e-11  Score=129.96  Aligned_cols=292  Identities=16%  Similarity=0.162  Sum_probs=190.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCC---cccchH----------
Q psy14449        194 CIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQNTFGCRT---MGHTYS----------  260 (673)
Q Consensus       194 ~i~lGlQh~lam~~~~vv~Plil~~algl~~~~~~~~~lIs~~i~~sGI~TLLq~lfG~rL---~G~Sfa----------  260 (673)
                      .+..|+-.++.-+++.+++-+-..++.|+  ++++....+++..+.+|++|++|+++= |+   ++-|-.          
T Consensus        23 ~~~aG~va~lvg~~~~~~iv~~a~~~~g~--s~aq~~swl~a~~~~~Gl~ti~lS~~~-r~Pi~~awStPGaAll~~~~~   99 (395)
T TIGR00843        23 TLIAGFLAVLIGYAGPAAIFFQAAIKAGA--STAMIIGWITAIGIAAAVSGIFLSIRF-KTPVLTAWSAPGAALLVTGFP   99 (395)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeecCchHHHHHHHhcC
Confidence            56788888888777777654444445544  567889999999999999999999754 54   443411          


Q ss_pred             -HHHHHH-HH--HH-----HHHHHhHHHHHHHhhCCcchhhHHHHhhhhhHHHHHHhhhccccchhhhhHHHHHHhhhcc
Q psy14449        261 -ESLRSA-GY--VG-----WFSPSGVVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAASKHWGISVSTIIMLTVFSQCLS  331 (673)
Q Consensus       261 -~~~~~i-Ga--Va-----ilg~~gl~g~l~~~~pPlvig~~I~lIGLsl~~~~~~~~~~~~~Ia~~sl~lil~~~~yl~  331 (673)
                       .++.++ |+  ++     ++|++|.++|+.|.+|+.+...+++.+.+.+.-..+........+++..+ +...+   .|
T Consensus       100 ~~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~~pll~~~ml-l~~l~---~~  175 (395)
T TIGR00843       100 GISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDGLFLICFSML-LCWLA---SK  175 (395)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHH---HH
Confidence             134555 77  33     67899999999999999888888887777764333333333343332221 11111   11


Q ss_pred             ccccCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhhcccCCCCCCCccccccccccCCCccccccccccccc
Q psy14449        332 EVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTEALPKGHPARTDVKLRILEDSSWFRVPYPGQWGTP  411 (673)
Q Consensus       332 ~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiigwl~a~iLg~~~~~p~~~~~rtd~~~~~i~~apw~~~P~p~~~g~P  411 (673)
                                          ++.+++++++++++|.++++..+..+.             +.+.   | .++.| .|-.|
T Consensus       176 --------------------r~~Pr~avl~aLlvG~iva~~~G~~~~-------------~~~~---~-~l~~p-~~~~P  217 (395)
T TIGR00843       176 --------------------AFAPRYAMIAALICGIAFSFALGDMNP-------------TDLD---F-KIALP-QFIAP  217 (395)
T ss_pred             --------------------HhcchHHHHHHHHHHHHHHHHhcCCCc-------------cccc---c-ccccc-eeeCC
Confidence                                456679999999999999998886543             1111   1 12222 45667


Q ss_pred             ccccchHHHH-HHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhHHHHhhhcCCCCC------ccccccccc
Q psy14449        412 TVSLSGVLGM-LAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLAGLWGSGNG------TNTFGENVG  484 (673)
Q Consensus       412 ~f~~~~v~~~-~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGigsilaGl~Gtg~g------~Tt~seN~G  484 (673)
                      +||+...+.. +..+++.+....-.=.++.|..|.++|    .|+-+.++|++|++++.||. .+      +++--.+- 
T Consensus       218 ~fs~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p----~~~~~~~tGl~sll~ApfGg-~~~nlaaitaAic~G~-  291 (395)
T TIGR00843       218 DFSFAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNAP----AKPIIAAAGLAALFAAFAGG-ISIGIAAITAAICMGK-  291 (395)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCC----chHHHHHHHHHHHHHhccCC-chhhhhHHhHHHhcCc-
Confidence            8877666533 334444444443334567777776654    47899999999999999995 55      22211111 


Q ss_pred             eecccccccce--ehhHHHHHHHHHHHh-hHHHHHHhcCChhhHHHHHHH-HHHHHHH
Q psy14449        485 AIGVTKVGSRR--VIQYACALMLLQGII-NKFGAVFIIIPEPVVGGIFCV-MFGMIAA  538 (673)
Q Consensus       485 ~i~~Tgv~SR~--vi~~aa~~li~lg~~-pKf~al~asIP~pViggvl~v-~fg~i~~  538 (673)
                        ..-|..+||  ....+|++.++++++ +.+..+++.+|.+.+..+-=. +++.+..
T Consensus       292 --~ah~d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~  347 (395)
T TIGR00843       292 --DAHEDKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAG  347 (395)
T ss_pred             --ccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence              222333444  456788888999988 999999999999988775433 4455443


No 12 
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.41  E-value=1.6e-11  Score=140.41  Aligned_cols=293  Identities=17%  Similarity=0.227  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCC---cccc--hHH----H
Q psy14449        192 YLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQNTFGCRT---MGHT--YSE----S  262 (673)
Q Consensus       192 ~~~i~lGlQh~lam~~~~vv~Plil~~algl~~~~~~~~~lIs~~i~~sGI~TLLq~lfG~rL---~G~S--fa~----~  262 (673)
                      +..++.|+.      .+.++.|.-++.+--.+.++       ..++..+-++.++-++||.+-   .|++  ++.    .
T Consensus        22 ~~Dl~AGlt------va~valP~ama~a~~aGv~p-------~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~   88 (554)
T COG0659          22 RGDLLAGLT------VAAVALPLAMAFAIAAGVPP-------EAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAV   88 (554)
T ss_pred             HHHHHHHHH------HHHHHhHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHH
Confidence            345666665      34456677665542122232       578888888999999998753   3432  221    1


Q ss_pred             HH---HHH---H-----HH-----HHHHHhHHHHHHHhhCCcchhhHHHHhhhhhHHHHHHhh-----------------
Q psy14449        263 LR---SAG---Y-----VG-----WFSPSGVVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAA-----------------  309 (673)
Q Consensus       263 ~~---~iG---a-----Va-----ilg~~gl~g~l~~~~pPlvig~~I~lIGLsl~~~~~~~~-----------------  309 (673)
                      +.   +-|   +     .+     ++|++. .|++.+++|.-|+-.++..+|+..+-.-.+..                 
T Consensus        89 i~~~~~~g~~~~~~~tllaGv~~i~~G~lR-LG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~~~~~~~~~~~l  167 (554)
T COG0659          89 IASLVETGLALAFLATLLAGVFQILLGLLR-LGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASKVSGFWAKVSAL  167 (554)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHH
Confidence            11   111   1     11     334443 67899999965555555555554442222211                 


Q ss_pred             -----hccc---cchhhhhHHHHHHhhhccccccCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhhcccCCC
Q psy14449        310 -----SKHW---GISVSTIIMLTVFSQCLSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTEALPK  381 (673)
Q Consensus       310 -----~~~~---~Ia~~sl~lil~~~~yl~~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiigwl~a~iLg~~~~~p~  381 (673)
                           ..||   .++.+++.+++..+++.+                       |..+.|+++++++++++.+.....   
T Consensus       168 ~~~~~~~~~~~~~lg~~~l~il~~~~~~~~-----------------------~~P~~liaiv~~t~i~~~~~~~~~---  221 (554)
T COG0659         168 FTVLLTINLATLLLGLLTLAILLFLPRLTP-----------------------RIPSPLIALVLGTLIVWIFPLDSL---  221 (554)
T ss_pred             HHhcccccHHHHHHHHHHHHHHHHccchhh-----------------------hCCcHHHHHHHHHHHHHHhcCCch---
Confidence                 0122   445555555554443322                       123478888888888888865421   


Q ss_pred             CCCCccc-cccccccCCCccccccccccccccccc----chHHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccc
Q psy14449        382 GHPARTD-VKLRILEDSSWFRVPYPGQWGTPTVSL----SGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRG  456 (673)
Q Consensus       382 ~~~~rtd-~~~~~i~~apw~~~P~p~~~g~P~f~~----~~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rg  456 (673)
                          |.+ .-.+.....||+++        |.+++    ..+...++.+++.++||.-+..+.+++.|.    +++-||.
T Consensus       222 ----~~G~i~~~lp~~~~~~~~--------P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~----~~d~nrE  285 (554)
T COG0659         222 ----RYGEIPGSLPSGLPHFRL--------PNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGT----KHDSNRE  285 (554)
T ss_pred             ----hcccCcccCCcCCCcccC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHH
Confidence                111 00012222344444        44443    344567888899999999988888887765    4667899


Q ss_pred             hhhhhhHHHHhhhcCCCCCccccccccceecccccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHH-HHHH
Q psy14449        457 IAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCV-MFGM  535 (673)
Q Consensus       457 i~~dGigsilaGl~Gtg~g~Tt~seN~G~i~~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v-~fg~  535 (673)
                      +.++|++|+.+|+|| |.|.|....+.......|..||.+..+++++++++-++  ++.++..||.+++++++++ .+++
T Consensus       286 LiaqGiaNi~sglfg-g~p~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~--~~~~~~~IP~a~Laavli~v~~~l  362 (554)
T COG0659         286 LIAQGIANIASGLFG-GIPATGSISRSAINIKSGARTRLSGIIHAALLLLLLLF--LAPLVSYIPLAALAAVLILVGWGL  362 (554)
T ss_pred             HHHhhHHHHHHHHhC-CccccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHH--HHHHHHhCcHHHHHHHHHHHHHHh
Confidence            999999999999999 59999999999999999999999999999998777655  6889999999999999887 3344


Q ss_pred             HHHHHHHh
Q psy14449        536 IAAFGLSA  543 (673)
Q Consensus       536 i~~~Gls~  543 (673)
                      +-...++.
T Consensus       363 ~~~~~~~~  370 (554)
T COG0659         363 LDWSLLKP  370 (554)
T ss_pred             ccHHHHHH
Confidence            44444433


No 13 
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.34  E-value=3.8e-12  Score=141.47  Aligned_cols=251  Identities=10%  Similarity=0.030  Sum_probs=154.8

Q ss_pred             HHhhhcCCCeeeeehh-------hhHHhHhhhccCceeeceeehhcccchHhHHHhhcc----------ceeeehhhhhc
Q psy14449         10 LNMENLDPPGTVHSSV-------SVVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAASK----------HWGISSLRQKI   72 (673)
Q Consensus        10 ~~m~~~~g~~~~~~~~-------g~~g~~~r~i~Pl~i~P~v~l~gl~l~~~~~~~~~~----------~w~i~~~~~~~   72 (673)
                      ..++++||+.++++.+       |+++++.|+++|++..|+++++|++|++.+.+..+.          +|++.-   .+
T Consensus        98 ~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~~~~~~~~~~~~---~~  174 (433)
T PRK11412         98 DIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGIADPNGKIQLPP---FG  174 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccCcccccccchHH---HH
Confidence            5677889999999974       579999999999999999999999999999996531          232110   11


Q ss_pred             cchhhhhhhhhhhhccCCcccCCcccccCCCceEEeeccccccceehccccCCCCCCCcccccCCCCCccccccchhHHH
Q psy14449         73 LYFSTIIMLTVFSQCLSEVKLPGINYSKEEGFKIVWFNLFKLFPVLGLVDQNGHSKSSEKIEDRPDITYGIDDVPPWYLC  152 (673)
Q Consensus        73 ~~~~~~~l~vlfsqyl~~~~~p~~~~~~~~~~~~~~~~~f~~fpvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  152 (673)
                      ++..++..+++++++.|                    .++|++|+|                        +++++.|.+|
T Consensus       175 ~a~~~l~~il~~~~~~~--------------------g~~~~~svL------------------------iGiv~G~v~a  210 (433)
T PRK11412        175 LSVAVMCLVLAMIIFLP--------------------QRIARYSLL------------------------VGTIVGWILW  210 (433)
T ss_pred             HHHHHHHHHHHHHHHhh--------------------hHHHHHHHH------------------------HHHHHHHHHH
Confidence            22335555555555432                    368999999                        9999999987


Q ss_pred             HHhhhhhccccCCCCCCCCCcccCCCCCcc----cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCch
Q psy14449        153 IFMALQVLGLVDQNGHSKSSEKIEDRPDIT----YGIDDVPPWYLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPA  228 (673)
Q Consensus       153 ~~lt~~~~~~~~~~~~~~~~~~r~~~~~l~----y~v~~~ppw~~~i~lGlQh~lam~~~~vv~Plil~~algl~~~~~~  228 (673)
                      .++.    |. +..         ...+..|    |+.+++-.|...+..-+-.+..| ...+..-...++..  +.+ .+
T Consensus       211 ~~~~----g~-d~~---------~v~~a~w~~~pfG~P~~F~~~~il~~~~~~lv~~-~e~iG~~~a~~~~~--~~~-~~  272 (433)
T PRK11412        211 AFCF----PS-SHS---------LSGELHWQWFPLGSGGALEPGIILTAVITGLVNI-SNTYGAIRGTDVFY--PQQ-GA  272 (433)
T ss_pred             HHHh----CC-Ccc---------hhccCCceeecCCCCCccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh--CCC-CC
Confidence            7553    11 110         0011112    11111011211111111111111 11111111222221  111 22


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHH-------------HH-HH-HHHHHhHHHHHHHhhC-Ccch--
Q psy14449        229 RGHIISTMIFVTAIVTFIQNTFGCRTMGHTYSESLRSA-------------GY-VG-WFSPSGVVGVLLKYVT-PLTI--  290 (673)
Q Consensus       229 ~~~lIs~~i~~sGI~TLLq~lfG~rL~G~Sfa~~~~~i-------------Ga-Va-ilg~~gl~g~l~~~~p-Plvi--  290 (673)
                      +.+-++|++.++|++|++.++||.- ..++|+|+...+             ++ +- ++|++++++.+...+| |+..  
T Consensus       273 ~~~~l~rgi~~dGi~s~laglfg~~-p~tt~sqNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~  351 (433)
T PRK11412        273 GNTRYRRSFVATGFMTLITVPLAVI-PFSPFVSSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAV  351 (433)
T ss_pred             CCcccccchhhccHHHHHHHhcCCC-CCCchhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            2567899999999999999999974 567899854222             22 22 6677777777777778 5543  


Q ss_pred             ----hhHHHHhhhhhHHHHHHhhhccccchhhhhHHHHHHh
Q psy14449        291 ----VPTVSLVGLSLFENAAEAASKHWGISVSTIIMLTVFS  327 (673)
Q Consensus       291 ----g~~I~lIGLsl~~~~~~~~~~~~~Ia~~sl~lil~~~  327 (673)
                          ...++..|++..+..+.+ .||..+..+++.+.+...
T Consensus       352 ~~~~Fg~I~~~Gi~~l~~~~~~-~rn~~ivg~sl~~Glg~~  391 (433)
T PRK11412        352 MLVSYLPLLGSALVFSQQITFT-ARNIYRLALPLFVGIFLM  391 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCC-cccchhhHHHHHHHhhHH
Confidence                346788888888766555 789999999988888763


No 14 
>PRK11660 putative transporter; Provisional
Probab=99.24  E-value=5.7e-10  Score=128.63  Aligned_cols=108  Identities=16%  Similarity=0.218  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhHHHHhhhcCCCCCccccccccceecccccccceeh
Q psy14449        418 VLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVI  497 (673)
Q Consensus       418 v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGigsilaGl~Gtg~g~Tt~seN~G~i~~Tgv~SR~vi  497 (673)
                      +...++..+++.+|++-...+.++..++    +++.||.+.++|++|+++|++|+ .|.+++.....+...+|.++|.+.
T Consensus       282 l~~a~~iaiv~~iesl~~~~~~~~~~~~----~~d~n~EL~a~G~aNi~~~~fgg-~p~~~s~srSa~n~~aGarT~la~  356 (568)
T PRK11660        282 LPAAFSMAMLGAIESLLCAVVLDGMTGT----KHSANSELVGQGLGNIVAPFFGG-ITATAAIARSAANVRAGATSPISA  356 (568)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCcHHHHHHhHHHHHHHHhCc-ccccchHHHHHHHHhcCCCcHHHH
Confidence            3456677788899998766666666553    35678999999999999999995 999999788888888999999999


Q ss_pred             hHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHH
Q psy14449        498 QYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVM  532 (673)
Q Consensus       498 ~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~  532 (673)
                      .++++++++.-++  ++.++..||.+++++++++.
T Consensus       357 iv~a~~~ll~ll~--l~~ll~~iP~~vLa~ili~~  389 (568)
T PRK11660        357 VIHALLVLLALLV--LAPLLSYLPLSAMAALLLMV  389 (568)
T ss_pred             HHHHHHHHHHHHH--HHHHHHhCcHHHHHHHHHHH
Confidence            9998877554322  34599999999999999873


No 15 
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=99.16  E-value=1.1e-09  Score=126.16  Aligned_cols=117  Identities=13%  Similarity=0.169  Sum_probs=97.5

Q ss_pred             cccccccc----hHHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhHHHHhhhcCCCCCccccccccc
Q psy14449        409 GTPTVSLS----GVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVG  484 (673)
Q Consensus       409 g~P~f~~~----~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGigsilaGl~Gtg~g~Tt~seN~G  484 (673)
                      +.|.+++.    .+...++.++++++|++....+.++..+.+    .+.||.+.++|++|+++|+||+ .|.+.+..+..
T Consensus       249 ~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~----~d~n~El~a~G~~N~~~~~fg~-~p~~~s~srs~  323 (563)
T TIGR00815       249 PPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYK----IDANQELVAQGIANIVGSFFSC-YPATGSLSRTA  323 (563)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCcHHHHHhhHHHHHHHHhCc-cCCCCcchHHH
Confidence            34445543    344668888999999999888888776543    4567999999999999999995 99998888899


Q ss_pred             eecccccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHH
Q psy14449        485 AIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVM  532 (673)
Q Consensus       485 ~i~~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~  532 (673)
                      +...+|..+|.+..++++++++..++  ++.++..||.+++||++++.
T Consensus       324 ~~~~~G~~t~~a~i~~~~~~l~~~l~--~~~~l~~iP~~~la~ili~~  369 (563)
T TIGR00815       324 VNAKAGCRTQLSGVVTAIVVLLVLLV--LTPLFYYIPQAALAAIIISA  369 (563)
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHH--HHHHHHhChHHHHHHHHHHH
Confidence            99999999999999999998777665  57799999999999999884


No 16 
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.14  E-value=5.7e-11  Score=131.26  Aligned_cols=280  Identities=15%  Similarity=0.150  Sum_probs=186.3

Q ss_pred             HHhhhcCCCeeeeehh-----hhHH-hHhhhccCceeeceeehhcccchHhHHHhhcc--------------ceeeehhh
Q psy14449         10 LNMENLDPPGTVHSSV-----SVVG-VLLKYVTPLTIVPTVSLVGLSLFENAAEAASK--------------HWGISSLR   69 (673)
Q Consensus        10 ~~m~~~~g~~~~~~~~-----g~~g-~~~r~i~Pl~i~P~v~l~gl~l~~~~~~~~~~--------------~w~i~~~~   69 (673)
                      ..++.+.|++++++++     .+.+ ++.|++.|++..|+++++|++|.+.|...++.              ++++|+  
T Consensus       103 ~~~~~~~G~ii~ag~~~~li~~~~~~~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~~~~~~~~l~la~--  180 (451)
T COG2233         103 DGIAALLGGIIAAGLVYFLISPIVKIRLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPDFGSLENLGLAL--  180 (451)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCcccCchhHHHHHH--
Confidence            3489999999999986     4666 99999999999999999999999999997653              345555  


Q ss_pred             hhccchhhhhhhhhhhhccCCcccCCcccccCCCceEEeeccccccceehccccCCCCCCCcccccCCCCCccccccchh
Q psy14449         70 QKILYFSTIIMLTVFSQCLSEVKLPGINYSKEEGFKIVWFNLFKLFPVLGLVDQNGHSKSSEKIEDRPDITYGIDDVPPW  149 (673)
Q Consensus        70 ~~~~~~~~~~l~vlfsqyl~~~~~p~~~~~~~~~~~~~~~~~f~~fpvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  149 (673)
                            .+++.+++++.|.|-                    .+|+.|||                        +++++.|
T Consensus       181 ------~tl~~il~~~~f~~g--------------------~~~~i~IL------------------------iGlv~G~  210 (451)
T COG2233         181 ------VTLLIILLINRFGKG--------------------FLRRIPIL------------------------IGLVVGY  210 (451)
T ss_pred             ------HHHHHHHHHHHHhhh--------------------HHHHHHHH------------------------HHHHHHH
Confidence                  588888888877544                    48899999                        9999999


Q ss_pred             HHHHHhhhhhccccCCCCCCCCCcccCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHH-------HhhhcccC
Q psy14449        150 YLCIFMALQVLGLVDQNGHSKSSEKIEDRPDITYGIDDVPPWYLCIFMALQHYLTMIGAIVSIPF-------ILTPALCM  222 (673)
Q Consensus       150 ~~~~~lt~~~~~~~~~~~~~~~~~~r~~~~~l~y~v~~~ppw~~~i~lGlQh~lam~~~~vv~Pl-------il~~algl  222 (673)
                      ++|..+.  ..+.            +.-.+..|+.+++.-+++.  .+-.+-.+.|.-..++.-.       ..++..  
T Consensus       211 ~la~~~G--~vdf------------~~v~~a~w~~~P~~~~fg~--~F~~~ail~m~~v~iV~~~E~~G~i~A~~~it--  272 (451)
T COG2233         211 LLALFMG--MVDF------------SGVAEAPWFALPTPFYFGM--AFDWGAILTMLPVAIVTIVEHTGDITATGEIT--  272 (451)
T ss_pred             HHHHHhC--CcCc------------cccccCceeeCCcccCCCe--eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHh--
Confidence            9999887  2221            1223456788877655443  3333444444333333211       111111  


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHH----------HHH---HH-HH-HHHHHhHHHHHHHhhC-
Q psy14449        223 REDDPARGHIISTMIFVTAIVTFIQNTFGCRTMGHTYSESL----------RSA---GY-VG-WFSPSGVVGVLLKYVT-  286 (673)
Q Consensus       223 ~~~~~~~~~lIs~~i~~sGI~TLLq~lfG~rL~G~Sfa~~~----------~~i---Ga-Va-ilg~~gl~g~l~~~~p-  286 (673)
                      + .+-+...-+.|++...|++|++.++||+- .-++|+|+.          |.+   ++ +. ++|++++++.+...+| 
T Consensus       273 g-~~~~~~~~l~rg~~aDGlat~iag~fg~~-p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~  350 (451)
T COG2233         273 G-RDLDGKPRLRRGLLADGLATLIAGLFGGF-PNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPS  350 (451)
T ss_pred             C-CcCccCcccccceeeccHHHHHHHhcCCC-CCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCCh
Confidence            1 11111245789999999999999999986 567899853          222   33 44 7888888888888888 


Q ss_pred             Ccchh------hHHHHhhhhhHHHHHHhhhc-cccchhhhhHHHHHHhhhccccccCccccccccccchhhhhhhhhhHH
Q psy14449        287 PLTIV------PTVSLVGLSLFENAAEAASK-HWGISVSTIIMLTVFSQCLSEVKVPGINYSKEEGFKIVWFNLFKLFPV  359 (673)
Q Consensus       287 Plvig------~~I~lIGLsl~~~~~~~~~~-~~~Ia~~sl~lil~~~~yl~~~~~p~p~~~~~~~~~~~~~~~~~~~av  359 (673)
                      |+..|      ..|+..|+..+.....+..+ |..|...++.+.+....... +..-.|.|.+              --.
T Consensus       351 pVlGGa~ivmFG~Ia~sGir~l~~~~~~~~~~Nl~IvAvsl~~Gig~~~~p~-~~~~~p~~~~--------------~l~  415 (451)
T COG2233         351 PVLGGAMLVLFGMIAASGIRILIRNKVDRSRRNLLIVAVSLGLGIGVGAVPE-VFLQLPAWLR--------------PLL  415 (451)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcccccCccceeeehHHHHhCcchhcCch-hhhhCcHHHH--------------HHH
Confidence            65444      46667777777665555555 99998888888776443111 1000111111              113


Q ss_pred             HHHHHHHHHHHHHhhhc
Q psy14449        360 LLTIMIMWGICGLLTLT  376 (673)
Q Consensus       360 Ligiiigwl~a~iLg~~  376 (673)
                      .=|+..+.+.+.+|...
T Consensus       416 ~sGia~g~i~AIvLNll  432 (451)
T COG2233         416 SSGIALGTLTAIVLNLL  432 (451)
T ss_pred             hccHHHHHHHHHHHHHh
Confidence            34688888888888754


No 17 
>PF00860 Xan_ur_permease:  Permease family;  InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include:  Xanthine permease PbuX, involved in cellualar xanthine transport []  Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease []  Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C []   These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.13  E-value=3.3e-11  Score=132.72  Aligned_cols=260  Identities=16%  Similarity=0.178  Sum_probs=154.7

Q ss_pred             hHHHhhhcCCCeeeeehh-------hhHHhHhhhccCceeeceeehhcccchHhHHHhhccceee------ehhhhhccc
Q psy14449          8 TELNMENLDPPGTVHSSV-------SVVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAASKHWGI------SSLRQKILY   74 (673)
Q Consensus         8 ~~~~m~~~~g~~~~~~~~-------g~~g~~~r~i~Pl~i~P~v~l~gl~l~~~~~~~~~~~w~i------~~~~~~~~~   74 (673)
                      -+..+++++|+.++++++       |+.+++.|++.|.+..+++.++||+|.+.+.++++.+|+.      +......++
T Consensus        85 ~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (389)
T PF00860_consen   85 GGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNPDGLLVGDGKNLGLA  164 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---BTT-B---HHHHHHH
T ss_pred             hhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhccccccccccccccccccccccc
Confidence            478999999999999975       6788999999999999999999999999999999999943      222233344


Q ss_pred             hhhhhhhhhhhhccCCcccCCcccccCCCceEEeeccccccceehccccCCCCCCCcccccCCCCCccccccchhHHHHH
Q psy14449         75 FSTIIMLTVFSQCLSEVKLPGINYSKEEGFKIVWFNLFKLFPVLGLVDQNGHSKSSEKIEDRPDITYGIDDVPPWYLCIF  154 (673)
Q Consensus        75 ~~~~~l~vlfsqyl~~~~~p~~~~~~~~~~~~~~~~~f~~fpvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  154 (673)
                      ..+.+..++.+.+++.                    .+++++++                        +++.+.|++|.+
T Consensus       165 ~~~~~~~~~~~~~~~~--------------------~~~~~ail------------------------igi~~g~i~~~~  200 (389)
T PF00860_consen  165 VLTLLFILLLSLFLKG--------------------FLRKGAIL------------------------IGIIAGWIVAAI  200 (389)
T ss_dssp             HHHHHHHHHHHHSSST--------------------TTTTHHHH------------------------HHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhh--------------------hcccccch------------------------hhhhhhhhhhhc
Confidence            5566666666666433                    36789999                        999999999999


Q ss_pred             hhhhhccccCCCCCCCCCcccCCCCCcccccCCCCChHH------HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCch
Q psy14449        155 MALQVLGLVDQNGHSKSSEKIEDRPDITYGIDDVPPWYL------CIFMALQHYLTMIGAIVSIPFILTPALCMREDDPA  228 (673)
Q Consensus       155 lt~~~~~~~~~~~~~~~~~~r~~~~~l~y~v~~~ppw~~------~i~lGlQh~lam~~~~vv~Plil~~algl~~~~~~  228 (673)
                      ++  ..+..++           -.+..|++.++..+|..      .++.-+.-++..+..++-.-..+++..+.  +. +
T Consensus       201 ~g--~~~~~~~-----------~~~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~--~~-~  264 (389)
T PF00860_consen  201 LG--VVDFSPS-----------VSSAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGK--DD-P  264 (389)
T ss_dssp             HH--HTTSSH------------HHHS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS---T-C
T ss_pred             cc--ccccCcc-----------cccccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCC--CC-c
Confidence            98  6554331           11233555554444321      11112222222222222222233333322  21 2


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHH--H---H-----HH-----HHHHHhHHHHHHHhhC-Ccchhh
Q psy14449        229 RGHIISTMIFVTAIVTFIQNTFGCRTMGHTYSESLRSA--G---Y-----VG-----WFSPSGVVGVLLKYVT-PLTIVP  292 (673)
Q Consensus       229 ~~~lIs~~i~~sGI~TLLq~lfG~rL~G~Sfa~~~~~i--G---a-----Va-----ilg~~gl~g~l~~~~p-Plvig~  292 (673)
                      +.+-++|++.+.|++|++.++||+- ..++|+|+...+  +   +     .+     +++++.++..+...+| |+..|+
T Consensus       265 ~~~~~~r~l~~dg~~~~l~gl~G~~-~~t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~  343 (389)
T PF00860_consen  265 RPPRIRRGLLADGLGTILAGLFGTS-PTTTYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGP  343 (389)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHT----EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHH
T ss_pred             cchhhcccceeeeeeeeechhhcCC-CCccccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            2677899999999999999999994 567888854332  1   1     11     4445555555566667 443444


Q ss_pred             ------HHHHhhhhhHHHHHHhhhccccchhhhhHHHHHHhh
Q psy14449        293 ------TVSLVGLSLFENAAEAASKHWGISVSTIIMLTVFSQ  328 (673)
Q Consensus       293 ------~I~lIGLsl~~~~~~~~~~~~~Ia~~sl~lil~~~~  328 (673)
                            +++..|++..+..+.+..||.++.++++.+.+..+.
T Consensus       344 ~lv~~g~i~~~gi~~i~~~~~~~~r~~~iv~~~l~~g~~i~~  385 (389)
T PF00860_consen  344 LLVLFGMIMMSGIRNIDWVDLDSARNAFIVGLSLPLGLSIAF  385 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHH---
T ss_pred             hHHHHHHHHHHHhHhheecccCccccHHHHHHhHHHHHHHhc
Confidence                  556677777777666667888888888888877654


No 18 
>PF00916 Sulfate_transp:  Sulfate transporter family;  InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are:   Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70.  Escherichia coli hypothetical protein ychM.  Caenorhabditis elegans hypothetical protein F41D9.5.   These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.02  E-value=7e-10  Score=116.20  Aligned_cols=124  Identities=20%  Similarity=0.190  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhHHHHhhhcCCCCCccccccccceeccccccccee
Q psy14449        417 GVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRV  496 (673)
Q Consensus       417 ~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGigsilaGl~Gtg~g~Tt~seN~G~i~~Tgv~SR~v  496 (673)
                      .+...++.++++.+|++.+..+.++..+.+    .+.||.+.++|++|+++|++| |.|.+.+..+..+....|.+||.+
T Consensus       149 ~~~~a~~ia~v~~~~s~~~~~~~~~~~~~~----~d~n~El~a~G~aNi~s~~~g-g~p~~~s~srs~~~~~~Ga~t~~s  223 (280)
T PF00916_consen  149 LLPTALAIAIVGFIESLLIAKSIAKKTGYR----IDPNQELIALGLANIVSGLFG-GMPGSGSFSRSAVNYRAGARTRLS  223 (280)
T ss_pred             cchhHHHHHHHHHHHHHHhhhhhccccccc----CCcHHHHHHhhhccccchhhc-ccccccccccchHHHhcCcceeeh
Confidence            344567888999999998777777665543    467899999999999999999 599999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHH-HHHHHHHHHHHhhhhc
Q psy14449        497 IQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCV-MFGMIAAFGLSALQYV  547 (673)
Q Consensus       497 i~~aa~~li~lg~~pKf~al~asIP~pViggvl~v-~fg~i~~~Gls~L~~v  547 (673)
                      ..+++++++++-++  ++.++..||.+++||++++ .+.++-...++.+.+.
T Consensus       224 ~~~~~~~~l~~l~~--~~~~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~  273 (280)
T PF00916_consen  224 GLISALFVLLVLLF--LAPLLAYIPKAVLAAILIVVGISLIDWSSLRRLWRV  273 (280)
T ss_pred             hHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcC
Confidence            99999998765544  4679999999999999987 3344444445544443


No 19 
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=98.94  E-value=1e-09  Score=121.57  Aligned_cols=247  Identities=11%  Similarity=0.125  Sum_probs=151.9

Q ss_pred             hHHHhhhcCCCeeeeehh-----hhHHhHhhhccCceeeceeehhcccchHhHHHhhcc-----------ceeeehhhhh
Q psy14449          8 TELNMENLDPPGTVHSSV-----SVVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAASK-----------HWGISSLRQK   71 (673)
Q Consensus         8 ~~~~m~~~~g~~~~~~~~-----g~~g~~~r~i~Pl~i~P~v~l~gl~l~~~~~~~~~~-----------~w~i~~~~~~   71 (673)
                      +.+.+++.+|+.++++++     ++.+++.|++.|..+.++++++|+++.+.+.+....           +|.+++    
T Consensus        78 ~~~~~~~~~ga~~v~Gii~illg~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~~~~~~~~l~l----  153 (406)
T TIGR03173        78 AGGGLGAIFGAVIVAGLFVILLAPFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDFGSPQNLGLAL----  153 (406)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCcccccchHHHHHHH----
Confidence            467899999999999976     689999999999999999999999999999987642           233443    


Q ss_pred             ccchhhhhhhhhhhhccCCcccCCcccccCCCceEEeeccccccceehccccCCCCCCCcccccCCCCCccccccchhHH
Q psy14449         72 ILYFSTIIMLTVFSQCLSEVKLPGINYSKEEGFKIVWFNLFKLFPVLGLVDQNGHSKSSEKIEDRPDITYGIDDVPPWYL  151 (673)
Q Consensus        72 ~~~~~~~~l~vlfsqyl~~~~~p~~~~~~~~~~~~~~~~~f~~fpvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  151 (673)
                          .++++++++.++.|.                    ++|+++++                        +.+++.|.+
T Consensus       154 ----~~l~~~il~~~~~~~--------------------~~~~~aiL------------------------i~ivvg~iv  185 (406)
T TIGR03173       154 ----LTLVIILLLNRFGKG--------------------FLRSIAVL------------------------LGLVVGTIV  185 (406)
T ss_pred             ----HHHHHHHHHHHHhhh--------------------HHHHhHHH------------------------HHHHHHHHH
Confidence                467766666654322                    47788999                        889999999


Q ss_pred             HHHhhhhhccccCCCCCCCCCcccCCCCCcccccCCC-----C--ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy14449        152 CIFMALQVLGLVDQNGHSKSSEKIEDRPDITYGIDDV-----P--PWYLCIFMALQHYLTMIGAIVSIPFILTPALCMRE  224 (673)
Q Consensus       152 ~~~lt~~~~~~~~~~~~~~~~~~r~~~~~l~y~v~~~-----p--pw~~~i~lGlQh~lam~~~~vv~Plil~~algl~~  224 (673)
                      +..+.  ..+..+    .        .+..|+.+.+.     |  .|...... +--++.-+..++..-..+++..  +.
T Consensus       186 a~~~g--~~~~~~----i--------~~~~~~~~P~~~~~~~P~f~~~~~~~~-~~~~lv~~~esig~~~a~~~~~--g~  248 (406)
T TIGR03173       186 AAALG--MVDFSG----V--------AEAPWFALPTPFHFGAPTFDLVAILTM-IIVYLVSMVETTGDFLALGEIT--GR  248 (406)
T ss_pred             HHHhc--CCCchh----h--------ccCCeeeCCCCCcCCCCeeCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh--CC
Confidence            98876  322110    0        00111222211     1  12111110 0011111111111111111211  11


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHH--H-HH-------HH-----HHHHHhHHHHHHHhhCC-c
Q psy14449        225 DDPARGHIISTMIFVTAIVTFIQNTFGCRTMGHTYSESLRS--A-GY-------VG-----WFSPSGVVGVLLKYVTP-L  288 (673)
Q Consensus       225 ~~~~~~~lIs~~i~~sGI~TLLq~lfG~rL~G~Sfa~~~~~--i-Ga-------Va-----ilg~~gl~g~l~~~~pP-l  288 (673)
                        +...+-+++.+...|+++++.++||.- ..++|+|+...  . |+       ++     ++++++....+.+.+|. +
T Consensus       249 --~~~~~~~~~~l~~~Gi~~i~aglfG~~-p~t~~~~~~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~v  325 (406)
T TIGR03173       249 --PITEKDLAGGLRADGLGSALGGLFNTF-PYTSFSQNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPV  325 (406)
T ss_pred             --CCCchhccchHHhccHHHHHHHHhCCC-CCcchhhhHHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence              122456899999999999999999974 45567774311  1 21       11     55666667777788884 4


Q ss_pred             chhh------HHHHhhhhhHHHHHHhhhccccchhhhhHHHHHH
Q psy14449        289 TIVP------TVSLVGLSLFENAAEAASKHWGISVSTIIMLTVF  326 (673)
Q Consensus       289 vig~------~I~lIGLsl~~~~~~~~~~~~~Ia~~sl~lil~~  326 (673)
                      ..+.      ++...|++.+.....+..||..+.++++.+.+..
T Consensus       326 lgg~~l~~~~~i~~~g~~~l~~~~~~~~rn~~i~g~~~~~g~~~  369 (406)
T TIGR03173       326 LGGAGLVMFGMVAASGIRILSKVDFDRRRNLLIVAVSLGLGLGP  369 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccCcceehhhHHHHHHHHHH
Confidence            3332      4455666666555444456999999999988844


No 20 
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=98.91  E-value=1.1e-09  Score=121.65  Aligned_cols=247  Identities=14%  Similarity=0.190  Sum_probs=156.9

Q ss_pred             HHHhhhcCCCeeeeehh----hh------HHhHhhhccCceeeceeehhcccchHhHHHhhc--------------ccee
Q psy14449          9 ELNMENLDPPGTVHSSV----SV------VGVLLKYVTPLTIVPTVSLVGLSLFENAAEAAS--------------KHWG   64 (673)
Q Consensus         9 ~~~m~~~~g~~~~~~~~----g~------~g~~~r~i~Pl~i~P~v~l~gl~l~~~~~~~~~--------------~~w~   64 (673)
                      .+..++.+|+.++++++    +.      .+++.|++.|.+..++++++|++|.+.+.+.++              +||.
T Consensus        87 ~~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~~~~~~~~~~  166 (415)
T TIGR00801        87 GLGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSATYGSLENLG  166 (415)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCcccccccCchhhHH
Confidence            35678899999999975    32      245699999999999999999999999999874              2244


Q ss_pred             eehhhhhccchhhhhhhhhhhhccCCcccCCcccccCCCceEEeeccccccceehccccCCCCCCCcccccCCCCCcccc
Q psy14449         65 ISSLRQKILYFSTIIMLTVFSQCLSEVKLPGINYSKEEGFKIVWFNLFKLFPVLGLVDQNGHSKSSEKIEDRPDITYGID  144 (673)
Q Consensus        65 i~~~~~~~~~~~~~~l~vlfsqyl~~~~~p~~~~~~~~~~~~~~~~~f~~fpvl~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (673)
                      +|+        .++++++++.++.|+                    ++|+++++                        +.
T Consensus       167 vg~--------~~l~~~vl~~~~~~g--------------------~~~~~aiL------------------------ig  194 (415)
T TIGR00801       167 VAF--------VVLALIILLNRFGKG--------------------FLKSISIL------------------------IG  194 (415)
T ss_pred             HHH--------HHHHHHHHHHHHHhh--------------------HHHHHHHH------------------------HH
Confidence            444        588888888887653                    36788999                        88


Q ss_pred             ccchhHHHHHhhhhhccccCCCCCCCCCcccCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHH-------Hhh
Q psy14449        145 DVPPWYLCIFMALQVLGLVDQNGHSKSSEKIEDRPDITYGIDDVPPWYLCIFMALQHYLTMIGAIVSIPF-------ILT  217 (673)
Q Consensus       145 ~~~~w~~~~~lt~~~~~~~~~~~~~~~~~~r~~~~~l~y~v~~~ppw~~~i~lGlQh~lam~~~~vv~Pl-------il~  217 (673)
                      +++.|.++..+.  ..+..+         .   .+..|+.+++..+|+.  -+-......++...++.-.       -++
T Consensus       195 iv~g~i~a~~lg--~~~~~~---------v---~~~~~~~lP~~~~~g~--~f~~~~~~~~~~i~lv~~~es~g~~~a~a  258 (415)
T TIGR00801       195 ILVGYILALFMG--IVDFSP---------V---IDAPWFSLPTPFTFGP--SFEWPAILTMLPVAIVSLVESIGDITATA  258 (415)
T ss_pred             HHHHHHHHHHcC--Cccchh---------h---ccCcccccCCccCCCc--eecHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            999999999887  332210         0   0111222222111110  0011122222222221111       112


Q ss_pred             hcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHH----------HHH---HH-HH-HHHHHhHHHHHH
Q psy14449        218 PALCMREDDPARGHIISTMIFVTAIVTFIQNTFGCRTMGHTYSESL----------RSA---GY-VG-WFSPSGVVGVLL  282 (673)
Q Consensus       218 ~algl~~~~~~~~~lIs~~i~~sGI~TLLq~lfG~rL~G~Sfa~~~----------~~i---Ga-Va-ilg~~gl~g~l~  282 (673)
                      +..+   ++.+..+-+++.+.+.|++|++.++||+- ..++|+|+.          |.+   ++ +. +++++++++.+.
T Consensus       259 ~~~g---~~~~~~~~~~r~l~adGl~~i~aglfG~~-p~t~~sen~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~  334 (415)
T TIGR00801       259 DVSG---RDLSGDPRLHRGVLADGLATLLAGLFGGF-PNTTFAQNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALI  334 (415)
T ss_pred             HHhC---CCCCCCccccchHHHhhHHHHHHHhcCCC-CCcchhhhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2221   11111456899999999999999999974 455677632          222   22 22 667777777788


Q ss_pred             HhhC-Ccchhh------HHHHhhhhhHHHHHHhhhccccchhhhhHHHHHHh
Q psy14449        283 KYVT-PLTIVP------TVSLVGLSLFENAAEAASKHWGISVSTIIMLTVFS  327 (673)
Q Consensus       283 ~~~p-Plvig~------~I~lIGLsl~~~~~~~~~~~~~Ia~~sl~lil~~~  327 (673)
                      +.+| |+..|.      .+...|++.+.....|..||..+.++++.+.+.+.
T Consensus       335 ~~iP~~vlgg~~l~~~~~i~~~gi~~l~~~~~~~~r~~~i~~~s~~~g~~~~  386 (415)
T TIGR00801       335 TSIPSPVLGGASIVMFGMIAASGIRILIRNKLDNRRNRNIIAASVGLGLGVT  386 (415)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHhCccCcccceehHHHHHHHHHHHh
Confidence            8888 544333      45566677776665555789999999998888774


No 21 
>PF03594 BenE:  Benzoate membrane transport protein;  InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=98.89  E-value=4.8e-07  Score=98.04  Aligned_cols=289  Identities=18%  Similarity=0.225  Sum_probs=179.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCC--------ccc-----chH
Q psy14449        194 CIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQNTFGCRT--------MGH-----TYS  260 (673)
Q Consensus       194 ~i~lGlQh~lam~~~~vv~Plil~~algl~~~~~~~~~lIs~~i~~sGI~TLLq~lfG~rL--------~G~-----Sfa  260 (673)
                      .+..|+-..+.-+.+.+++-+-..++.|+  ++++...=+-...+..|+.|+.-.+.= |.        .|.     +..
T Consensus         7 ~~~aG~va~lvg~tg~~aiv~qaa~a~g~--s~~q~~SWl~al~~~~Gl~~i~lSl~y-R~Pi~~AWStPGaAlL~~~~~   83 (378)
T PF03594_consen    7 AVSAGFVAVLVGYTGPVAIVLQAAQAAGA--SPAQIASWLFALYLGMGLTSILLSLRY-RMPIVTAWSTPGAALLATSLP   83 (378)
T ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchhhcchHHHHHHHHhcc
Confidence            45677777777767766654444455544  445566666777888899999887631 21        111     000


Q ss_pred             -HHHHHH-HH--HH-----HHHHHhHHHHHHHhhCCcchhhHHHHhhhhhHHHHHHhhhccccchhhhhHHHHHHhhhcc
Q psy14449        261 -ESLRSA-GY--VG-----WFSPSGVVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAASKHWGISVSTIIMLTVFSQCLS  331 (673)
Q Consensus       261 -~~~~~i-Ga--Va-----ilg~~gl~g~l~~~~pPlvig~~I~lIGLsl~~~~~~~~~~~~~Ia~~sl~lil~~~~yl~  331 (673)
                       .++.++ |+  ++     +.|++|.++|+.+.+|+-+...+++.+-+++.-..+.....+..+.+..+..-++..    
T Consensus        84 ~~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~~P~l~~~ml~~~l~~~----  159 (378)
T PF03594_consen   84 GYSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQADPLLVGPMLAVFLLAR----  159 (378)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----
Confidence             134555 77  33     788999999999999976666666655555443334444444444444433323222    


Q ss_pred             ccccCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhhcccCCCCCCCccccccccccCCCccccccccccccc
Q psy14449        332 EVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTEALPKGHPARTDVKLRILEDSSWFRVPYPGQWGTP  411 (673)
Q Consensus       332 ~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiigwl~a~iLg~~~~~p~~~~~rtd~~~~~i~~apw~~~P~p~~~g~P  411 (673)
                                          ++.++++++..+++|-+++...+..+.             ..+   + ..+|.| .|-.|
T Consensus       160 --------------------r~~pr~av~~al~~g~~~a~~~g~~~~-------------~~~---~-~~~~~p-~~~~P  201 (378)
T PF03594_consen  160 --------------------RFSPRYAVLAALVAGVAVAALTGQLHP-------------SAL---Q-LSLAHP-VFTTP  201 (378)
T ss_pred             --------------------HHcchhHHHHHHHHHHHHHHhcCCCCc-------------ccc---c-ccccee-EEECC
Confidence                                345578999999999999887765433             111   1 123333 57789


Q ss_pred             ccccchHHHH-HHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhHHHHhhhcCCCCCccccccccceec---
Q psy14449        412 TVSLSGVLGM-LAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIG---  487 (673)
Q Consensus       412 ~f~~~~v~~~-~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGigsilaGl~Gtg~g~Tt~seN~G~i~---  487 (673)
                      +||+..++.+ +..+++.|..-----.++-|..|.++|    .|+-+.+.|+++++.+.||. .+     -|.+.+.   
T Consensus       202 ~Fs~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p----~~~~~~~tGl~s~l~ApfGg-~~-----~nlAaitaAI  271 (378)
T PF03594_consen  202 EFSWSALVSLALPLFIVTMASQNLPGIAVLRAAGYQPP----VNPLITVTGLASLLAAPFGG-HA-----VNLAAITAAI  271 (378)
T ss_pred             cccHHHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCC----chHHHHHHHHHHHHHhhhch-hh-----hHHHHHHHHH
Confidence            9999888754 455555554333334456666666544    45789999999999999994 43     3443332   


Q ss_pred             -cc----ccccce--ehhHHHHHHHHHHH-hhHHHHHHhcCChhhHHHHHHH-HHHHHH
Q psy14449        488 -VT----KVGSRR--VIQYACALMLLQGI-INKFGAVFIIIPEPVVGGIFCV-MFGMIA  537 (673)
Q Consensus       488 -~T----gv~SR~--vi~~aa~~li~lg~-~pKf~al~asIP~pViggvl~v-~fg~i~  537 (673)
                       .+    +..+||  +...+|++.+++|+ -+.+.+++...|.+.+..+-=. +++.+.
T Consensus       272 c~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~  330 (378)
T PF03594_consen  272 CAGPEAHPDPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLG  330 (378)
T ss_pred             HcCCccCCCcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence             11    223343  45677788888885 4678999999999887665433 334443


No 22 
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=98.81  E-value=5.2e-09  Score=116.77  Aligned_cols=246  Identities=13%  Similarity=0.174  Sum_probs=153.8

Q ss_pred             HHhhhcCCCeeeeehh----hhH------HhHhhhccCceeeceeehhcccchHhHHHhhc----cceeeehhhhhccch
Q psy14449         10 LNMENLDPPGTVHSSV----SVV------GVLLKYVTPLTIVPTVSLVGLSLFENAAEAAS----KHWGISSLRQKILYF   75 (673)
Q Consensus        10 ~~m~~~~g~~~~~~~~----g~~------g~~~r~i~Pl~i~P~v~l~gl~l~~~~~~~~~----~~w~i~~~~~~~~~~   75 (673)
                      ..+++.+|+.++++.+    |+.      +++.|++.|++..++++++|++|.+.+.+..+    ++| .++        
T Consensus       107 ~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~~~~~~~-~al--------  177 (429)
T TIGR03616       107 PNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASGFDSW-MAV--------  177 (429)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhccccccccH-HHH--------
Confidence            4588889999999975    432      67999999999999999999999999999765    355 344        


Q ss_pred             hhhhhhhhhhhccCCcccCCcccccCCCceEEeeccccccceehccccCCCCCCCcccccCCCCCccccccchhHHHHHh
Q psy14449         76 STIIMLTVFSQCLSEVKLPGINYSKEEGFKIVWFNLFKLFPVLGLVDQNGHSKSSEKIEDRPDITYGIDDVPPWYLCIFM  155 (673)
Q Consensus        76 ~~~~l~vlfsqyl~~~~~p~~~~~~~~~~~~~~~~~f~~fpvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l  155 (673)
                      .+++.++++.++.|.                    ++|++++|                        +++++.|++|.++
T Consensus       178 ~tl~~i~l~~l~~~~--------------------~l~~~avL------------------------iGivvG~iva~~l  213 (429)
T TIGR03616       178 LTILCIGAVAVFTRG--------------------MLQRLLIL------------------------VGLIAAYLAYFIL  213 (429)
T ss_pred             HHHHHHHHHHHHHHH--------------------HHHHHHHH------------------------HHHHHHHHHHHHH
Confidence            377777777665433                    57889999                        9999999999987


Q ss_pred             hhhhccccCCCCCCCCCcccCCCCCcccccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHH-------HhhhcccCCCCCc
Q psy14449        156 ALQVLGLVDQNGHSKSSEKIEDRPDITYGIDDVP-PWYLCIFMALQHYLTMIGAIVSIPF-------ILTPALCMREDDP  227 (673)
Q Consensus       156 t~~~~~~~~~~~~~~~~~~r~~~~~l~y~v~~~p-pw~~~i~lGlQh~lam~~~~vv~Pl-------il~~algl~~~~~  227 (673)
                      + ...|..      +..+...-.+..|+.+.+.. |     -+-+..+++|+...++.-.       -+++..  +.+ .
T Consensus       214 ~-~~~g~~------~~vd~s~v~~a~~~~lP~~~~p-----~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~--~~~-~  278 (429)
T TIGR03616       214 T-NVFGLG------KAVDFSPISQAAWFGLPNFHTP-----VFNANAMLLIAPVALILVAENLGHFKAVAGMT--GRN-L  278 (429)
T ss_pred             h-hhcCCC------ccccCcccccCccccCCcCCCc-----eEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--CCC-C
Confidence            5 122210      00111111223444444321 1     0111222333222222211       112221  212 1


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHH----------HHH---HH-HH-HHHHHhHHHHHHHhhC-Ccchh
Q psy14449        228 ARGHIISTMIFVTAIVTFIQNTFGCRTMGHTYSESL----------RSA---GY-VG-WFSPSGVVGVLLKYVT-PLTIV  291 (673)
Q Consensus       228 ~~~~lIs~~i~~sGI~TLLq~lfG~rL~G~Sfa~~~----------~~i---Ga-Va-ilg~~gl~g~l~~~~p-Plvig  291 (673)
                      + . -+++++.+.|++|++.+++|.- .-++|+|+.          |.+   ++ +- +++++++++.+...+| |+..|
T Consensus       279 ~-~-~i~r~l~adGl~t~~agl~g~~-p~tt~~en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG  355 (429)
T TIGR03616       279 D-P-YMGRAFVGDGLATMLSGSVGGT-GVTTYAENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGG  355 (429)
T ss_pred             C-c-hhccchhhhhHHHHHHHhcCCC-CCcceeeeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            1 2 3899999999999999999874 456677632          222   22 22 7778888888888888 55444


Q ss_pred             h------HHHHhhhhhHH--HHHHhhhccccchhhhhHHHHHH
Q psy14449        292 P------TVSLVGLSLFE--NAAEAASKHWGISVSTIIMLTVF  326 (673)
Q Consensus       292 ~------~I~lIGLsl~~--~~~~~~~~~~~Ia~~sl~lil~~  326 (673)
                      .      .+...|++.+.  ..+.+..||..+.++++.+.+..
T Consensus       356 ~~i~~fg~i~~~Gi~~l~~~~~d~~~~rn~~ivg~sl~~g~g~  398 (429)
T TIGR03616       356 ASIVVFGLIAVAGARIWVQNKVDLTQNGNLIMVAVTLVLGAGD  398 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCcCccceeehhHHHHHHHhHH
Confidence            3      45666677552  22233456888888888877754


No 23 
>PRK10720 uracil transporter; Provisional
Probab=98.79  E-value=6.3e-09  Score=116.09  Aligned_cols=243  Identities=16%  Similarity=0.210  Sum_probs=151.8

Q ss_pred             HHhhhcCCCeeeeehh----hhH------HhHhhhccCceeeceeehhcccchHhHHHhhcc-----------ceeeehh
Q psy14449         10 LNMENLDPPGTVHSSV----SVV------GVLLKYVTPLTIVPTVSLVGLSLFENAAEAASK-----------HWGISSL   68 (673)
Q Consensus        10 ~~m~~~~g~~~~~~~~----g~~------g~~~r~i~Pl~i~P~v~l~gl~l~~~~~~~~~~-----------~w~i~~~   68 (673)
                      ..+++.+|+.++++++    ++.      +++.|++.|.++.+.++++|+++.+.+....+.           +|.++  
T Consensus        84 ~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~~g~~~~~~~~~~~~~~~la--  161 (428)
T PRK10720         84 LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIIS--  161 (428)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhhccccCCCCcccchHHHHHH--
Confidence            4788999999999975    442      368899999999999999999999999876542           34344  


Q ss_pred             hhhccchhhhhhhhhhhhccCCcccCCcccccCCCceEEeeccccccceehccccCCCCCCCcccccCCCCCccccccch
Q psy14449         69 RQKILYFSTIIMLTVFSQCLSEVKLPGINYSKEEGFKIVWFNLFKLFPVLGLVDQNGHSKSSEKIEDRPDITYGIDDVPP  148 (673)
Q Consensus        69 ~~~~~~~~~~~l~vlfsqyl~~~~~p~~~~~~~~~~~~~~~~~f~~fpvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (673)
                            ..+++++++++++.|+.                    ++++|++                        +++++.
T Consensus       162 ------lv~l~iil~~~~~~kg~--------------------~~~~~iL------------------------igIvvG  191 (428)
T PRK10720        162 ------MVTLAVTVLGSVLFRGF--------------------LAIIPIL------------------------IGVLVG  191 (428)
T ss_pred             ------HHHHHHHHHHHHHhccH--------------------HHHhHHH------------------------HHHHHH
Confidence                  45888888887776543                    6788999                        999999


Q ss_pred             hHHHHHhhhhhccccCCCCCCCCCcccCCCCCcccccCCC--CChHHHHHHHHHHHHHHHHHHHHHHH-------Hhhhc
Q psy14449        149 WYLCIFMALQVLGLVDQNGHSKSSEKIEDRPDITYGIDDV--PPWYLCIFMALQHYLTMIGAIVSIPF-------ILTPA  219 (673)
Q Consensus       149 w~~~~~lt~~~~~~~~~~~~~~~~~~r~~~~~l~y~v~~~--ppw~~~i~lGlQh~lam~~~~vv~Pl-------il~~a  219 (673)
                      |+++.++.  ..+..+         .   .+..|+.+++.  |.|      .....+.++...++.-.       -.++.
T Consensus       192 ~ila~~lG--~~d~~~---------v---~~a~~~~lP~~~~P~f------d~~~il~l~~~~lv~~~EsiG~~~a~~~~  251 (428)
T PRK10720        192 YALSFAMG--MVDTTP---------I---IEAHWFALPTFYTPRF------EWFAILTILPAALVVIAEHVGHLVVTANI  251 (428)
T ss_pred             HHHHHHhc--CCCHHH---------h---hcCccccCCCCCCCcC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999886  322110         0   00112222111  111      11111222222221111       11111


Q ss_pred             ccCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHH----------HHH---HH-HH-HHHHHhHHHHHHHh
Q psy14449        220 LCMREDDPARGHIISTMIFVTAIVTFIQNTFGCRTMGHTYSESL----------RSA---GY-VG-WFSPSGVVGVLLKY  284 (673)
Q Consensus       220 lgl~~~~~~~~~lIs~~i~~sGI~TLLq~lfG~rL~G~Sfa~~~----------~~i---Ga-Va-ilg~~gl~g~l~~~  284 (673)
                        .+.+ .....-+++.+.+.|++|++.++||+- ..++|+|+.          |.+   ++ +. +++++++++.+...
T Consensus       252 --~~~~-~~~~~~~~r~l~adGlatii~glfG~~-p~tty~en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~  327 (428)
T PRK10720        252 --VKKD-LLRDPGLHRSMFANGLSTVISGFFGST-PNTTYGENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQA  327 (428)
T ss_pred             --hCCC-CCCCccccchHhhhhHHHHHHHhcCCC-CccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              1111 111345699999999999999999975 567788743          221   22 22 67777778888888


Q ss_pred             hC-Ccchhh------HHHHhhhhhH--HHHHHhhhccccchhhhhHHHHHHhh
Q psy14449        285 VT-PLTIVP------TVSLVGLSLF--ENAAEAASKHWGISVSTIIMLTVFSQ  328 (673)
Q Consensus       285 ~p-Plvig~------~I~lIGLsl~--~~~~~~~~~~~~Ia~~sl~lil~~~~  328 (673)
                      +| |+..|.      .+...|++..  ...+.+..||..+..+++.+.+...+
T Consensus       328 iP~pVlgg~~i~~fg~i~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~  380 (428)
T PRK10720        328 IPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAK  380 (428)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHH
Confidence            88 554443      4555566666  22333345688888888888876653


No 24 
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.74  E-value=3.3e-06  Score=90.17  Aligned_cols=278  Identities=16%  Similarity=0.202  Sum_probs=173.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCC------------------
Q psy14449        193 LCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQNTFGCRT------------------  254 (673)
Q Consensus       193 ~~i~lGlQh~lam~~~~vv~Plil~~algl~~~~~~~~~lIs~~i~~sGI~TLLq~lfG~rL------------------  254 (673)
                      +++..|++.++.-+++..++-+-.+.+.|.  ++.+.+.-+....+..|+.|+.-+++= |.                  
T Consensus        21 ~~l~ag~va~~vG~~~s~aii~~aa~a~ga--s~aq~aSwl~al~l~mGv~ti~Ls~~y-R~Pv~~aWSTPG~all~asl   97 (402)
T COG3135          21 QTLLAGFVAVLVGYASSLAIIIQAAQAAGA--SPAQIASWLTALGLAMGVSTLTLSLRY-RVPVLTAWSTPGAALLVASL   97 (402)
T ss_pred             hhhhhhhHHheeccCccHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHhhh-ccceeeeecCccHHHHHhcc
Confidence            467899999998888887764444444443  455677777788888999999887631 11                  


Q ss_pred             cccchHHHHHHHHH--HH-----HHHHHhHHHHHHHhhCCcchhhHHHHhhhhhHHHHHHhhhccccchhhhhHHHHHHh
Q psy14449        255 MGHTYSESLRSAGY--VG-----WFSPSGVVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAASKHWGISVSTIIMLTVFS  327 (673)
Q Consensus       255 ~G~Sfa~~~~~iGa--Va-----ilg~~gl~g~l~~~~pPlvig~~I~lIGLsl~~~~~~~~~~~~~Ia~~sl~lil~~~  327 (673)
                      +|-||+|.+   |+  |+     +.|.++.++++.+.+||-....+++.|=+.+.--++.....+..+.+..++.-+++ 
T Consensus        98 ~g~s~~eaV---GAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~~~p~l~lpmv~~~ll~-  173 (402)
T COG3135          98 GGLSFAEAV---GAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALPTQPLLVLPMVLAYLLA-  173 (402)
T ss_pred             CCCCHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH-
Confidence            222333322   66  33     67888888899999998655555554433332222332333333333322221211 


Q ss_pred             hhccccccCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhhcccCCCCCCCccccccccccCCCccccccccc
Q psy14449        328 QCLSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTEALPKGHPARTDVKLRILEDSSWFRVPYPGQ  407 (673)
Q Consensus       328 ~yl~~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiigwl~a~iLg~~~~~p~~~~~rtd~~~~~i~~apw~~~P~p~~  407 (673)
                         |                    .+-.+++|+..+++|.+++.+.|..+.        .|       .++-+..|   +
T Consensus       174 ---r--------------------~f~pr~aV~aalvvgv~va~~~G~~~~--------~~-------~~~~~~~p---~  212 (402)
T COG3135         174 ---R--------------------VFAPRYAVIAALVVGVLVAALLGDLHT--------AL-------VALEISTP---T  212 (402)
T ss_pred             ---H--------------------HcCchHHHHHHHHHHHHHHHHhCcccc--------cc-------cccccCcc---e
Confidence               2                    223369999999999999999985532        11       11112223   6


Q ss_pred             ccccccccchHHHH-HHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhHHHHhhhcCCCCCcccccccccee
Q psy14449        408 WGTPTVSLSGVLGM-LAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAI  486 (673)
Q Consensus       408 ~g~P~f~~~~v~~~-~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGigsilaGl~Gtg~g~Tt~seN~G~i  486 (673)
                      |-.|+|++...+.. +..+++.|..--.--.|+=|..|.++|+.    --+...|+.+++++.||.      |+-|.+.+
T Consensus       213 ~v~P~Fs~~A~l~lalPL~lvtmasQN~pGiAvLka~gY~pp~~----pl~~~TGl~sll~ApfG~------~t~nLaAI  282 (402)
T COG3135         213 WVTPEFSFAAMLSLALPLFLVTMASQNLPGIAVLKAAGYQPPPS----PLIVATGLASLLSAPFGG------HTVNLAAI  282 (402)
T ss_pred             eeCCcccHHHHHHHhHHHHHHHHHhccCccceeehhcCCCCCCc----hHHHHhHHHHHHhccccc------ceecHHHH
Confidence            77899999887743 55556665443333345556666555443    457899999999999995      33455544


Q ss_pred             cccccccc----------eehhHHHHHHHHHHHh-hHHHHHHhcCChhhHHHH
Q psy14449        487 GVTKVGSR----------RVIQYACALMLLQGII-NKFGAVFIIIPEPVVGGI  528 (673)
Q Consensus       487 ~~Tgv~SR----------~vi~~aa~~li~lg~~-pKf~al~asIP~pViggv  528 (673)
                      ...=|.+.          +...+++++-+++|+| +.+.+++...|.+.+..+
T Consensus       283 tAAic~gpdaHpD~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~l  335 (402)
T COG3135         283 TAAICTGPDAHPDPARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAAL  335 (402)
T ss_pred             HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence            43322222          4567788888888855 578999999999877654


No 25 
>KOG0236|consensus
Probab=97.99  E-value=0.00019  Score=84.63  Aligned_cols=159  Identities=16%  Similarity=0.147  Sum_probs=111.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCCccccccccccCCCcccccccccccccccccchHHHHHHHHHHhhcccc
Q psy14449        354 FKLFPVLLTIMIMWGICGLLTLTEALPKGHPARTDVKLRILEDSSWFRVPYPGQWGTPTVSLSGVLGMLAGVLACTVESI  433 (673)
Q Consensus       354 ~~~~avLigiiigwl~a~iLg~~~~~p~~~~~rtd~~~~~i~~apw~~~P~p~~~g~P~f~~~~v~~~~~~~lv~~vESi  433 (673)
                      ...-.-++.+++++++++.+....-+.   .-..+   +.....|...+|.+      .+.......+++..+++++|++
T Consensus       278 v~~~~~li~vIi~T~~~~~~~~~~~~~---~~~~~---~i~~g~~~~~lp~~------~~~~~~~~~~~~i~iva~~~~i  345 (665)
T KOG0236|consen  278 VPIPFELIVVIIGTLISYIFRLEGRYG---PIIVG---EIPRGFPPPSLPPL------SLTPQVIPDAFAIAIVALLEHI  345 (665)
T ss_pred             ecccHHHHHHHHHHHHHHHhccccccC---Ceeec---cCCCCCCCCCCCCh------hhhHHHHHHHHHHHHHHHHHHH
Confidence            344567888888888888886542110   00110   11122233333321      1122345568888999999998


Q ss_pred             chHHHHhchhCCCCCCCcccccchhhhhhHHHHhhhcCCCCCccccccccceecccccccceehhHHHHHHHHHHHhhHH
Q psy14449        434 SYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKF  513 (673)
Q Consensus       434 G~~~a~a~~~g~~~~~~~~i~Rgi~~dGigsilaGl~Gtg~g~Tt~seN~G~i~~Tgv~SR~vi~~aa~~li~lg~~pKf  513 (673)
                      +--.+.++.-+.+    -+-||.+.+-|++|+++++|++ .++|..-.+..+...+|+.++......+++.++.-.+  .
T Consensus       346 ai~k~fa~~~~y~----vd~nqELiAlG~~Ni~sSff~~-~p~tgs~sRSav~~~sG~~T~~s~i~~~~~vl~~l~~--l  418 (665)
T KOG0236|consen  346 AIGKSFASLHGYK----VDSNQELIALGISNILSSFFGC-YPTTGSFSRSAVNIKSGGRTQVAGIVSAALVLLALLF--L  418 (665)
T ss_pred             HHHHHHHHHhCCe----eCCChHHHHHHHHHHhhhhhce-EcccchhhHHHHHhhcCCcchHHHHHHHHHHHHHHHH--H
Confidence            7666666655544    3456999999999999999997 9999999999999999999999877777765544333  5


Q ss_pred             HHHHhcCChhhHHHHHHH
Q psy14449        514 GAVFIIIPEPVVGGIFCV  531 (673)
Q Consensus       514 ~al~asIP~pViggvl~v  531 (673)
                      +.+|..||.++++++.+.
T Consensus       419 ~p~f~~iP~~vLaaIIi~  436 (665)
T KOG0236|consen  419 GPLFYYIPKCVLAAIIIS  436 (665)
T ss_pred             HHHhhhhhHHHHHHHHHH
Confidence            779999999999999887


No 26 
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=96.57  E-value=0.98  Score=55.08  Aligned_cols=182  Identities=19%  Similarity=0.216  Sum_probs=95.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhccc----CCCCCCCccccccccccCCCcccccccccccccccc-cchHHHHHHHHH
Q psy14449        352 NLFKLFPVLLTIMIMWGICGLLTLTEA----LPKGHPARTDVKLRILEDSSWFRVPYPGQWGTPTVS-LSGVLGMLAGVL  426 (673)
Q Consensus       352 ~~~~~~avLigiiigwl~a~iLg~~~~----~p~~~~~rtd~~~~~i~~apw~~~P~p~~~g~P~f~-~~~v~~~~~~~l  426 (673)
                      +++.-|++.++|++...+.+.++-++.    .|+++. .|+     -..-.|+--|.-.....|... +.+++.-+..++
T Consensus       593 ~~isDfgv~iaI~~~t~v~~~~~~v~~~kl~Vp~~f~-pt~-----p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~I  666 (900)
T TIGR00834       593 RLIGDFGVPISILIMVLVDIFIGDTYTQKLSVPSGLK-VTN-----PSARGWFIPPLGENRPFPWWMMFAAALPALLVFI  666 (900)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccCcccccCCCCCcC-CCC-----CCCCCeEEccccccccccHHHHHHHHHHHHHHHH
Confidence            567779999999999998887653321    011110 110     011356632211000112221 222332233333


Q ss_pred             HhhccccchHHHHhchhCCCC---CCCcccccchhhhhhHHHHhhhcCCCCCccc-------------cccccc-e--ec
Q psy14449        427 ACTVESISYYPTTSKMCGAPP---PPVHAINRGIAIEGLGTVLAGLWGSGNGTNT-------------FGENVG-A--IG  487 (673)
Q Consensus       427 v~~vESiG~~~a~a~~~g~~~---~~~~~i~Rgi~~dGigsilaGl~Gtg~g~Tt-------------~seN~G-~--i~  487 (673)
                      --++|+=    -.+.+++.+.   .+....+=-+..-|+-+.++|++|---.+.+             ++|+.. .  -.
T Consensus       667 LiFmD~n----Its~iv~~~e~kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~  742 (900)
T TIGR00834       667 LIFMEQQ----ITTLIVSKKERKLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQ  742 (900)
T ss_pred             HHHHHhh----hHHHHhcCccccCCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCc
Confidence            3344442    2233333221   1233455667888999999999995211222             222210 0  01


Q ss_pred             ccccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhh
Q psy14449        488 VTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSALQY  546 (673)
Q Consensus       488 ~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~fg~i~~~Gls~L~~  546 (673)
                      ..+|.-.|+--+...+|+.++++  .+.++-.||.||+.|++++| |.-...|.+..++
T Consensus       743 i~~V~EQRvT~ll~~lLiglsv~--~~PvL~~IP~aVL~GvFlYM-Gv~SL~GnQ~~~R  798 (900)
T TIGR00834       743 IQEVREQRVTGLLVAVLVGLSIL--MEPILKRIPLAVLFGIFLYM-GVTSLSGIQLFDR  798 (900)
T ss_pred             cceeEeeehHHHHHHHHHHHHHH--HHHHHhhccHHHHHHHHHHH-HHhhcccCHHHHH
Confidence            33566666655555556544433  45599999999999999996 6666666665544


No 27 
>KOG1172|consensus
Probab=95.82  E-value=1.3  Score=53.32  Aligned_cols=181  Identities=19%  Similarity=0.199  Sum_probs=96.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhcccCCCCCCCccccccccccC--CCcccccc-cccccccccccchHHHHHHHHHHh
Q psy14449        352 NLFKLFPVLLTIMIMWGICGLLTLTEALPKGHPARTDVKLRILED--SSWFRVPY-PGQWGTPTVSLSGVLGMLAGVLAC  428 (673)
Q Consensus       352 ~~~~~~avLigiiigwl~a~iLg~~~~~p~~~~~rtd~~~~~i~~--apw~~~P~-p~~~g~P~f~~~~v~~~~~~~lv~  428 (673)
                      .++.-|++.++|++-.++.+..+...  +++..-|.-  ..+...  ..|+..|. +.+|..  .-.+.+.+++...+. 
T Consensus       572 ~~isDfgvpisIl~~s~i~~~~~~~~--~~kl~vp~~--~~~t~~~~rgw~v~~~~~~P~~~--~~~A~ipalll~iLi-  644 (876)
T KOG1172|consen  572 SLISDFGVPLSILVFSLIDYFGGSVE--TPKLPVPSV--FPPTWPFDRGWFVPPFGKNPWWY--VFAALIPALLLTILI-  644 (876)
T ss_pred             HHHHhhhhHHHHHHHHHHHhhccccC--CCccccCcC--CCCCCcccCCeeeCCCCCCCHHH--HHHHHHHHHHHHHHH-
Confidence            56777999999999999888887421  111111110  011111  35665441 112211  112233333333333 


Q ss_pred             hccccchHHHHhchhCCC---CCCCcccccchhhhhhHHHHhhhcCCCCCccccccccceec----------------cc
Q psy14449        429 TVESISYYPTTSKMCGAP---PPPVHAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIG----------------VT  489 (673)
Q Consensus       429 ~vESiG~~~a~a~~~g~~---~~~~~~i~Rgi~~dGigsilaGl~Gtg~g~Tt~seN~G~i~----------------~T  489 (673)
                      ++|.-=    .+.+++++   -.+....+=-+..-|+-+.++|++|---.+.+..++..=+.                .-
T Consensus       645 FmDqqI----ts~iv~rke~kLKKgsgyH~DLlllgil~~icsllGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~  720 (876)
T KOG1172|consen  645 FMDQQI----TAVIVNRKENKLKKGSGYHLDLLLLGILTLICSLLGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIV  720 (876)
T ss_pred             HhcchH----HHHHhhcccccCCCCcchhHHHHHHHHHHHHHHhcCCCccccccccCHHHHHHHHHhhcccCCCCccccc
Confidence            334321    22233321   12334556678899999999999996433444444432111                12


Q ss_pred             ccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhh
Q psy14449        490 KVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSALQY  546 (673)
Q Consensus       490 gv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~fg~i~~~Gls~L~~  546 (673)
                      +|...|+--.-..+|+.++  --...++-.||.||+.|++++| |+=...|.+..++
T Consensus       721 ~V~EQRvtgll~~llvgls--~~~~pvL~~IP~~VL~GvFlYM-gv~SL~Gnqf~eR  774 (876)
T KOG1172|consen  721 GVREQRVTGLLQFLLVGLS--VLLLPVLKLIPMPVLYGVFLYM-GVSSLPGNQFFER  774 (876)
T ss_pred             cchhhhhHHHHHHHHHHHH--HHHHHHHhhccHHHHHHHHHHH-hhccCCccHHHHH
Confidence            2334444333333343333  2255699999999999999996 6666666665544


No 28 
>PF00955 HCO3_cotransp:  HCO3- transporter family Only partial structure;  InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=87.80  E-value=0.17  Score=58.17  Aligned_cols=184  Identities=19%  Similarity=0.211  Sum_probs=1.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHhhhcccCCC-CCCCccccccccccCCCcccccccccccccccc-cc-hHHHHHHHHHH
Q psy14449        351 FNLFKLFPVLLTIMIMWGICGLLTLTEALPK-GHPARTDVKLRILEDSSWFRVPYPGQWGTPTVS-LS-GVLGMLAGVLA  427 (673)
Q Consensus       351 ~~~~~~~avLigiiigwl~a~iLg~~~~~p~-~~~~rtd~~~~~i~~apw~~~P~p~~~g~P~f~-~~-~v~~~~~~~lv  427 (673)
                      .+++.-|++.|++++...+.+.++ .+. |. +...+.  +.+.-..-.|+--|.   ...|.+. .. .+.+++...+.
T Consensus       277 R~~isDf~v~iaI~~~~~~~~~~~-~~~-~kL~vp~~f--~pt~~~~r~W~v~p~---~~~p~w~~~aA~~palll~iL~  349 (510)
T PF00955_consen  277 REIISDFGVPIAILIMTLVDYLFG-VDT-PKLNVPSSF--KPTSPGKRGWFVNPF---GSLPWWAIFAAIIPALLLTILF  349 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhHHhhHHHHHHHHHHHHHHHhc-ccc-cccCCCCCC--CCCCCCCCCeecCcc---cCCCHHHHHHHHHHHHHHHHHH
Confidence            367778999999999888887776 322 11 000000  000001135654332   1223222 12 22233333333


Q ss_pred             hhccccchHHHHhchhCCCCCCCcccccchhhhhhHHHHhhhcCCCCCccccccccc-eec---------------cccc
Q psy14449        428 CTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVG-AIG---------------VTKV  491 (673)
Q Consensus       428 ~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGigsilaGl~Gtg~g~Tt~seN~G-~i~---------------~Tgv  491 (673)
                      -+=+.+....+-.+..+.+  +....+=-+..-|+-+.++|++|---.+.+..++.- +-+               +.+|
T Consensus       350 F~DqnIts~ivn~~e~kLk--Kg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V  427 (510)
T PF00955_consen  350 FMDQNITSLIVNRPENKLK--KGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPKIVGV  427 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhHhHHHhCChhhccC--CCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCeeCeE
Confidence            3333343322222111111  223444557788999999999996333333333221 111               2234


Q ss_pred             ccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhh
Q psy14449        492 GSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSALQY  546 (673)
Q Consensus       492 ~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~fg~i~~~Gls~L~~  546 (673)
                      ...|+--+...+|+-++  .-+..++..||.||+.|++++| |.-...|.+..++
T Consensus       428 ~EqRvT~l~~~~Ligls--~~l~pvL~~IP~~VL~GvFlym-G~~sL~gnq~~~R  479 (510)
T PF00955_consen  428 REQRVTGLLVHLLIGLS--LFLLPVLKLIPMPVLYGVFLYM-GVTSLSGNQFFER  479 (510)
T ss_dssp             ----------------------------------------------------TTT
T ss_pred             EEecccHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHhh-eeeeecCccHHHH
Confidence            44444444444444333  3366789999999999999996 5555555554443


No 29 
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=85.11  E-value=4.5  Score=45.27  Aligned_cols=113  Identities=11%  Similarity=0.082  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCC---cccchH-----HH---H-HHHHH-HH------HHHHH-hHHHHHHHhhCCcchhh
Q psy14449        233 ISTMIFVTAIVTFIQNTFGCRT---MGHTYS-----ES---L-RSAGY-VG------WFSPS-GVVGVLLKYVTPLTIVP  292 (673)
Q Consensus       233 Is~~i~~sGI~TLLq~lfG~rL---~G~Sfa-----~~---~-~~iGa-Va------ilg~~-gl~g~l~~~~pPlvig~  292 (673)
                      ++..+.+.|++|++.+.||.--   -+-+-+     ++   . |+.++ +.      ++|++ +....+...+|+..+. 
T Consensus       256 ~~~~~~~tGl~sll~ApfGg~~~nlaaitaAic~G~~ah~d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~-  334 (395)
T TIGR00843       256 AKPIIAAAGLAALFAAFAGGISIGIAAITAAICMGKDAHEDKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIA-  334 (395)
T ss_pred             chHHHHHHHHHHHHHhccCCchhhhhHHhHHHhcCcccccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-
Confidence            4888899999999999998742   010111     11   1 22222 11      55655 5566677777864332 


Q ss_pred             HHHHhhhhhHHHHHHh------hhccccchhhhhHHHHHHhhhccccccCccccccccccchhhhhhhhhhHHHHHHHHH
Q psy14449        293 TVSLVGLSLFENAAEA------ASKHWGISVSTIIMLTVFSQCLSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIM  366 (673)
Q Consensus       293 ~I~lIGLsl~~~~~~~------~~~~~~Ia~~sl~lil~~~~yl~~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiig  366 (673)
                        ++-|+.+++....+      ..++-+-+.+++++..      .+                  ..++...+-+.|+++|
T Consensus       335 --~laGlAll~~~~~~l~~a~~~~~~r~~a~~tflvta------Sg------------------~~~~gigaafWgl~~G  388 (395)
T TIGR00843       335 --ALAGLALLGAIAGNIKIALHEDQERDAALIAFLATA------SG------------------LHFLGIGSAFWGLCAG  388 (395)
T ss_pred             --HHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH------hc------------------CCcccccHHHHHHHHH
Confidence              34455555543222      1234466777775554      11                  2567778999999999


Q ss_pred             HHHHHH
Q psy14449        367 WGICGL  372 (673)
Q Consensus       367 wl~a~i  372 (673)
                      .+...+
T Consensus       389 ~~~~~~  394 (395)
T TIGR00843       389 GLAYFI  394 (395)
T ss_pred             HHHHHh
Confidence            766543


No 30 
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=85.03  E-value=3  Score=48.69  Aligned_cols=122  Identities=18%  Similarity=0.234  Sum_probs=82.3

Q ss_pred             chHHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhHHHHhhhcCCCCCccccccccceecc-cc-cc-
Q psy14449        416 SGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGV-TK-VG-  492 (673)
Q Consensus       416 ~~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGigsilaGl~Gtg~g~Tt~seN~G~i~~-Tg-v~-  492 (673)
                      ..+++-+++.++..=|+++    -+..+|.++  .    .|+.+-=++.++.++||+ ++.-.+..-.+...+ .. +. 
T Consensus        23 ~Dl~AGltva~valP~ama----~a~~aGv~p--~----~GLyas~i~~~v~alfGg-s~~~i~GPt~a~~~v~a~~i~~   91 (554)
T COG0659          23 GDLLAGLTVAAVALPLAMA----FAIAAGVPP--E----AGLYASIVAGIIYALFGG-SRGLISGPTGAFAVVLAAVIAS   91 (554)
T ss_pred             HHHHHHHHHHHHHhHHHHH----HHHHcCCCH--H----HHHHHHHHHHHHHHHHcC-CccceeccchhhHHHHHHHHHH
Confidence            3566667777777777776    444666433  3    799999999999999995 777766554442222 11 11 


Q ss_pred             --------cceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhhccC
Q psy14449        493 --------SRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSALQYVDL  549 (673)
Q Consensus       493 --------SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~fg~i~~~Gls~L~~vdl  549 (673)
                              --.....+|++.+++|++ |+|.+..-||.||+-|.+.=.--.|....+..+...+.
T Consensus        92 ~~~~g~~~~~~~tllaGv~~i~~G~l-RLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~  155 (554)
T COG0659          92 LVETGLALAFLATLLAGVFQILLGLL-RLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLAS  155 (554)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence                    112445677888888877 89999999999999887776544555555655544443


No 31 
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=75.47  E-value=10  Score=44.35  Aligned_cols=121  Identities=14%  Similarity=0.230  Sum_probs=83.2

Q ss_pred             chHHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhHHHHhhhcCCCCCccccccccceeccc-----c
Q psy14449        416 SGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVT-----K  490 (673)
Q Consensus       416 ~~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGigsilaGl~Gtg~g~Tt~seN~G~i~~T-----g  490 (673)
                      ..+++-++..++.+-++++    .+.++|.++  .    -|+.+--+..++.++||+ ++.......+....++     +
T Consensus        16 ~Di~aGltv~~~~iP~~~a----yA~laglpp--~----~GLysa~~~~iv~alfGs-s~~~i~Gp~a~~sl~~~~~v~~   84 (563)
T TIGR00815        16 GDLMAGLTVGILLIPQAMA----YAILAGLSP--I----YGLYTSFVPPFIYALFGT-SRDIAIGPVAVMSLLLGSVIAR   84 (563)
T ss_pred             hHHHHHHHHHHHHHHHHHH----HHHHcCCCc--h----hhhHHHHHHHHHhheecC-CCcccCCHHHHHHHHHHHHHHH
Confidence            3455566666777777775    445555433  2    579999999999999997 7766665544322211     1


Q ss_pred             cccc------------eehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14449        491 VGSR------------RVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSALQYVD  548 (673)
Q Consensus       491 v~SR------------~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~fg~i~~~Gls~L~~vd  548 (673)
                      .+..            .....+|++++++|++ |+|.+...||.||+.|.+.-.--.+....++.+--.+
T Consensus        85 ~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~l-rlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~  153 (563)
T TIGR00815        85 VGLQYLFDCDAIRLAFTLTLLAGIFQVILGLL-RLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGIS  153 (563)
T ss_pred             hcCCCCcccHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            1111            4566788888899977 7999999999999999888766666666666654333


No 32 
>PF11840 DUF3360:  Protein of unknown function (DUF3360);  InterPro: IPR021794  This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length. 
Probab=63.66  E-value=2.5e+02  Score=31.52  Aligned_cols=201  Identities=15%  Similarity=0.152  Sum_probs=105.1

Q ss_pred             cchhhhhHHHHHHhhhccccccCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhhc-ccCCCCCCCccccccc
Q psy14449        314 GISVSTIIMLTVFSQCLSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLT-EALPKGHPARTDVKLR  392 (673)
Q Consensus       314 ~Ia~~sl~lil~~~~yl~~~~~p~p~~~~~~~~~~~~~~~~~~~avLigiiigwl~a~iLg~~-~~~p~~~~~rtd~~~~  392 (673)
                      .|+.+.+...+++-.|+.++         +|          |..++-++-+++-++++.+|.- ++       .|.....
T Consensus       206 ~i~fvvi~~tiv~Ya~L~k~---------~K----------rWLaIPl~~~~a~~~a~~lGa~f~f-------~t~pglp  259 (492)
T PF11840_consen  206 YIAFVVIIVTIVLYAYLAKI---------EK----------RWLAIPLCSILAGVLAFALGAPFEF-------TTEPGLP  259 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---------cc----------chhhhhHHHHHHHHHHHHcCCCcee-------ecCCCCC
Confidence            56667777777777777754         12          2467888888888888888752 11       1100000


Q ss_pred             cccCCCccccccccccccccccc-chHH--HHHHHHHHhhccccchHHHHhchhCCCCC--CCcccccchhhhhhHHHHh
Q psy14449        393 ILEDSSWFRVPYPGQWGTPTVSL-SGVL--GMLAGVLACTVESISYYPTTSKMCGAPPP--PVHAINRGIAIEGLGTVLA  467 (673)
Q Consensus       393 ~i~~apw~~~P~p~~~g~P~f~~-~~v~--~~~~~~lv~~vESiG~~~a~a~~~g~~~~--~~~~i~Rgi~~dGigsila  467 (673)
                      .++..=|..=-.-.|.|+|+++- -.++  +.+++++= .-|-.|+- ..+++.-.+..  ..-+++.......+=.+++
T Consensus       260 ~lnP~YWWge~tGw~LglP~~~hfiav~PFAiLAVaMW-SpDflghr-vFqelnypk~~~kvlMnvDDTm~~~siRQ~vG  337 (492)
T PF11840_consen  260 NLNPMYWWGEETGWQLGLPTLEHFIAVLPFAILAVAMW-SPDFLGHR-VFQELNYPKETKKVLMNVDDTMTMCSIRQIVG  337 (492)
T ss_pred             CCCCcccccCCcccccCCCcHHHHHHhccHHHHHHHHh-CchHHHHH-HHHHhcCchhhcceeecccchhHHHHHHHHHh
Confidence            11111111111223456776442 1122  22222222 23555532 23333321111  1227788999999999999


Q ss_pred             hhcCCCCCccccccccc--eecccccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHH-HHHHHHHHHHHhh
Q psy14449        468 GLWGSGNGTNTFGENVG--AIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCV-MFGMIAAFGLSAL  544 (673)
Q Consensus       468 Gl~Gtg~g~Tt~seN~G--~i~~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v-~fg~i~~~Gls~L  544 (673)
                      +.+|.  ++.++|=..=  -.++.|+-=+--.+.-++++++.++.+-=  .=..+=.||+--++++ +|--+.-.|++..
T Consensus       338 s~lGG--gN~~SsWgTymIPaaIaKRPIpggAiLtg~~Ci~~av~GyP--Mdlavw~Pvl~vALlvGVflPLleAGmqm~  413 (492)
T PF11840_consen  338 SILGG--GNIASSWGTYMIPAAIAKRPIPGGAILTGLLCIVAAVWGYP--MDLAVWPPVLRVALLVGVFLPLLEAGMQMT  413 (492)
T ss_pred             hcccC--CcccccchhhhhhHHHhcCCCCchHHHHHHHHHHHHHhcCc--chhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99995  4444443322  23455555445556666777776665410  1112225677666666 5666677788766


Q ss_pred             hh
Q psy14449        545 QY  546 (673)
Q Consensus       545 ~~  546 (673)
                      ++
T Consensus       414 r~  415 (492)
T PF11840_consen  414 RK  415 (492)
T ss_pred             hc
Confidence            54


No 33 
>PRK11660 putative transporter; Provisional
Probab=62.81  E-value=1.6e+02  Score=34.59  Aligned_cols=72  Identities=15%  Similarity=0.175  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcccchHHHH-HHH-HH-------HH---HHHHHhHHHHHHHhhCCcchhhHHHHhhhh
Q psy14449        233 ISTMIFVTAIVTFIQNTFGCRTMGHTYSESL-RSA-GY-------VG---WFSPSGVVGVLLKYVTPLTIVPTVSLVGLS  300 (673)
Q Consensus       233 Is~~i~~sGI~TLLq~lfG~rL~G~Sfa~~~-~~i-Ga-------Va---ilg~~gl~g~l~~~~pPlvig~~I~lIGLs  300 (673)
                      .++-+.+.|++.++-++||.-...+++++.. ..- |+       ++   ++...-+...+.+++|--+.++++..+|++
T Consensus       313 ~n~EL~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~  392 (568)
T PRK11660        313 ANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWN  392 (568)
T ss_pred             CcHHHHHHhHHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            4788999999999999999853344556532 111 33       22   111222345678889988888888899998


Q ss_pred             hHHH
Q psy14449        301 LFEN  304 (673)
Q Consensus       301 l~~~  304 (673)
                      +...
T Consensus       393 m~~~  396 (568)
T PRK11660        393 MSEA  396 (568)
T ss_pred             hhhH
Confidence            8754


No 34 
>PF03594 BenE:  Benzoate membrane transport protein;  InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=57.24  E-value=21  Score=39.78  Aligned_cols=118  Identities=29%  Similarity=0.454  Sum_probs=74.8

Q ss_pred             cccchHHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccchhh----hhhHHHHhhhc-----------------C
Q psy14449        413 VSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAI----EGLGTVLAGLW-----------------G  471 (673)
Q Consensus       413 f~~~~v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~----dGigsilaGl~-----------------G  471 (673)
                      ++...+..-+..++++.-.+.--....++..|.++   .++...+.+    .|+.++.-++.                 .
T Consensus         3 ~~~s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~---~q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AWStPGaAlL~   79 (378)
T PF03594_consen    3 FSLSAVSAGFVAVLVGYTGPVAIVLQAAQAAGASP---AQIASWLFALYLGMGLTSILLSLRYRMPIVTAWSTPGAALLA   79 (378)
T ss_pred             CcHHHHHHHHHHHHhhccchHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcchHHHHHHH
Confidence            45556666666677777777776777777776653   234444443    34444433322                 1


Q ss_pred             CCCCccccccccceecccccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhhc
Q psy14449        472 SGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSALQYV  547 (673)
Q Consensus       472 tg~g~Tt~seN~G~i~~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~fg~i~~~Gls~L~~v  547 (673)
                      +..+..++.|-+|           +...+++++++.|+.+-|+.+...||.++..+++.   |++.-.+++..+..
T Consensus        80 ~~~~~~~~~eavG-----------Afl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLA---GvLl~f~l~~f~a~  141 (378)
T PF03594_consen   80 TSLPGYSFAEAVG-----------AFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLA---GVLLPFGLAAFTAL  141 (378)
T ss_pred             HhccCCCHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            1122223444333           46788899999999999999999999999988865   55566666655443


No 35 
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=23.66  E-value=2.9e+02  Score=29.46  Aligned_cols=40  Identities=23%  Similarity=0.324  Sum_probs=33.8

Q ss_pred             hhHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhhccCC
Q psy14449        510 INKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSALQYVDLN  550 (673)
Q Consensus       510 ~pKf~al~asIP~pViggvl~v~fg~i~~~Gls~L~~vdl~  550 (673)
                      .+.+.+++..||+-++.|.-... |++=+.|+..|-+.-++
T Consensus       163 ~~~v~~il~~iP~~v~~Gl~vag-gmLPAvGfAmLl~~m~~  202 (265)
T TIGR00822       163 QSAVQAMLKAIPEVVTHGLQIAG-GIIVVVGYAMVLRMMFK  202 (265)
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHH-hhHHHHHHHHHHHHHhh
Confidence            56788999999999999998874 99999999998766554


No 36 
>PF11744 ALMT:  Aluminium activated malate transporter;  InterPro: IPR020966  This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=23.15  E-value=17  Score=40.94  Aligned_cols=69  Identities=28%  Similarity=0.418  Sum_probs=33.2

Q ss_pred             hhHHHHhhhcCCCCCccccccccceecccccccceehhHHHHHHHHHHHhhHHHHHHhcCChh-----hHHHHHHHHHHH
Q psy14449        461 GLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEP-----VVGGIFCVMFGM  535 (673)
Q Consensus       461 GigsilaGl~Gtg~g~Tt~seN~G~i~~Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~p-----Viggvl~v~fg~  535 (673)
                      ++||++||.+|-  +...-+++.|-      . ...+.++..++    +.+-++.+.--+|.-     =.+-+++.+|.+
T Consensus        67 ~lGTl~aG~La~--~~~~la~~~g~------~-~~~~~i~~~vF----i~~~~atf~r~~P~~k~rydYg~~Vf~LTf~l  133 (406)
T PF11744_consen   67 GLGTLLAGILAF--GVSWLASLSGD------P-GEPIVIGISVF----IIGFIATFVRFIPKIKARYDYGGLVFILTFCL  133 (406)
T ss_pred             HHHHHHHHHHHH--HHHHHHHhcCc------c-chhHHHHHHHH----HHHHHHHHHHhchhhhhhhhHHHHHHHHHHHh
Confidence            578899998875  22222222111      1 12333332222    222233455556641     134455557777


Q ss_pred             HHHHHHH
Q psy14449        536 IAAFGLS  542 (673)
Q Consensus       536 i~~~Gls  542 (673)
                      ++.+|.+
T Consensus       134 V~vs~yr  140 (406)
T PF11744_consen  134 VAVSGYR  140 (406)
T ss_pred             heeecCC
Confidence            7776543


No 37 
>KOG4085|consensus
Probab=22.51  E-value=1.1e+02  Score=29.60  Aligned_cols=46  Identities=20%  Similarity=0.236  Sum_probs=39.0

Q ss_pred             cccccceehhHHHHHHHHHHHhhHHHHHHhcCChhhHHHHHHHHHHHHHH
Q psy14449        489 TKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAA  538 (673)
Q Consensus       489 Tgv~SR~vi~~aa~~li~lg~~pKf~al~asIP~pViggvl~v~fg~i~~  538 (673)
                      -|-.+|.+.+.++++.+++|++.    .++.=|..+++|++-++-|.+..
T Consensus        28 ~r~l~rl~gilgaf~~~~fGvf~----~ITls~~c~vAgvlqm~agfivl   73 (175)
T KOG4085|consen   28 YRWLCRLSGILGAFSCAIFGVFN----CITLSPLCIVAGVLQMMAGFIVL   73 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh----HHhhhHHHHHHHHHHHHHHHHHH
Confidence            45667889999999999999887    88888999999999988777664


No 38 
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=21.45  E-value=6e+02  Score=29.75  Aligned_cols=81  Identities=19%  Similarity=0.051  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhhccccchHHHHhchhCCCCCCCcccccchhhhhhHHHHhhhcCCCCCccccccccceecccccccceeh
Q psy14449        418 VLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVI  497 (673)
Q Consensus       418 v~~~~~~~lv~~vESiG~~~a~a~~~g~~~~~~~~i~Rgi~~dGigsilaGl~Gtg~g~Tt~seN~G~i~~Tgv~SR~vi  497 (673)
                      .+.+.+..+-.+.|-.|.+..+-+-.. +..|++|++--+++=+.++++-|.-|=|+                     ++
T Consensus        69 ~IV~~AI~Lyk~~~~sG~f~~Ir~~i~-~It~DrRiQ~llIg~~FgaflEGAaGFGt---------------------P~  126 (522)
T COG1620          69 WIIFGAIFLYKMSVKSGAFDIIRKSLA-NITPDRRIQLLLIGFCFGAFLEGAAGFGT---------------------PA  126 (522)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHh-ccCCcchhhhhhHHHHHHHHHhhhcccCC---------------------hH
Confidence            556778889999999999988766554 44456788888899999999988877543                     46


Q ss_pred             hHHHHHHHHHHHhhHHHHHHhcC
Q psy14449        498 QYACALMLLQGIINKFGAVFIII  520 (673)
Q Consensus       498 ~~aa~~li~lg~~pKf~al~asI  520 (673)
                      .++|-+++-+||-|--++.++.|
T Consensus       127 AI~ApLLVgLGF~PL~AA~l~LI  149 (522)
T COG1620         127 AIAAPLLVGLGFNPLKAAGLCLI  149 (522)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHH
Confidence            67777777777777555555443


Done!