Query psy14449
Match_columns 673
No_of_seqs 421 out of 1871
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 20:08:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14449.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14449hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 10.8 1.4E+02 0.01 27.6 5.8 30 599-628 191-220 (447)
2 d2ffta1 g.88.1.1 (A:2-84) Thyl 2.4 2.1E+02 0.015 21.6 0.5 13 614-626 7-19 (83)
3 d3cx5c1 f.32.1.1 (C:262-385) M 2.3 5.4E+02 0.039 20.6 3.2 41 513-554 17-57 (124)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 1.8 1.6E+02 0.012 19.0 -0.9 12 77-88 24-35 (37)
5 d1oyia_ a.4.5.19 (A:) dsRNA-bi 1.6 1.8E+02 0.013 20.3 -1.0 15 178-192 44-59 (62)
6 d1f2na_ b.121.4.7 (A:) Sobemov 1.6 4.5E+02 0.033 22.8 1.5 19 651-669 45-67 (189)
7 d2axtm1 f.23.35.1 (M:1-36) Pho 1.6 3.7E+02 0.027 17.2 0.6 14 75-88 17-30 (36)
8 d1ng0a_ b.121.4.7 (A:) Sobemov 1.5 4.8E+02 0.035 22.7 1.5 19 651-669 43-65 (192)
9 d1d6ga_ g.33.1.1 (A:) Cholecys 1.5 7.4E+02 0.054 16.6 2.1 12 179-190 24-35 (47)
10 d1poca_ a.133.1.1 (A:) Phospho 1.5 4.3E+02 0.031 21.8 1.0 26 622-647 108-133 (134)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=10.80 E-value=1.4e+02 Score=27.62 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhhcCCCCCcccccccccccc
Q psy14449 599 LVGGMLGCLLDNLIPGTPEERGLVAWGEQM 628 (673)
Q Consensus 599 ~vg~l~aiiLd~~~p~t~~erg~~~w~~~~ 628 (673)
.+..++++++-..++.++++++....++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (447)
T d1pw4a_ 191 FCAILVALFAFAMMRDTPQSCGLPPIEEYK 220 (447)
T ss_dssp HHHHHHHHHHHHHCCCSSTTTCCCSCTTTC
T ss_pred hhHHHHHHHHHHhcccchhhcccchhhhhh
Confidence 344455555556667777777666555433
No 2
>d2ffta1 g.88.1.1 (A:2-84) Thylakoid soluble phosphoprotein TSP9 {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=2.39 E-value=2.1e+02 Score=21.64 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=10.6
Q ss_pred CCCcccccccccc
Q psy14449 614 GTPEERGLVAWGE 626 (673)
Q Consensus 614 ~t~~erg~~~w~~ 626 (673)
+++||+|+.+|--
T Consensus 7 g~KeeKg~idw~l 19 (83)
T d2ffta1 7 ETKQEKSFVDWLL 19 (83)
T ss_dssp CCCCCCSHHHHHH
T ss_pred CcccccchHHHHh
Confidence 4788999999943
No 3
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.34 E-value=5.4e+02 Score=20.61 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=24.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhhccCCCCcc
Q psy14449 513 FGAVFIIIPEPVVGGIFCVMFGMIAAFGLSALQYVDLNSSRN 554 (673)
Q Consensus 513 f~al~asIP~pViggvl~v~fg~i~~~Gls~L~~vdl~s~Rn 554 (673)
+=|++-+||+-. ||++.+..+.+...-+-.+.+.+..+.|.
T Consensus 17 ~YaiLRsiP~k~-~Gvl~~~~si~il~~lP~l~~s~~~s~~~ 57 (124)
T d3cx5c1 17 FYAILRSIPDKL-LGVITMFAAILVLLVLPFTDRSVVRGNTF 57 (124)
T ss_dssp HHHHHHTSSSHH-HHHHHHHHHHHGGGGHHHHCCCSSSSSTT
T ss_pred HHHHHhcCCcch-hhhHHHHHHHHHHHHHHHHhhhhhhhcch
Confidence 446889999985 55555544555544455555555555544
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.77 E-value=1.6e+02 Score=19.00 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=8.6
Q ss_pred hhhhhhhhhhcc
Q psy14449 77 TIIMLTVFSQCL 88 (673)
Q Consensus 77 ~~~l~vlfsqyl 88 (673)
..++-++||-|.
T Consensus 24 ifvl~vLFssYf 35 (37)
T d2axtl1 24 ILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 455668999885
No 5
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=1.62 E-value=1.8e+02 Score=20.34 Aligned_cols=15 Identities=47% Similarity=1.347 Sum_probs=11.3
Q ss_pred CCCcccccCCCCC-hH
Q psy14449 178 RPDITYGIDDVPP-WY 192 (673)
Q Consensus 178 ~~~l~y~v~~~pp-w~ 192 (673)
++.+.|.-+|.|| |.
T Consensus 44 rsamvy~s~d~pprw~ 59 (62)
T d1oyia_ 44 RSAMVYSSDDIPPRWF 59 (62)
T ss_dssp HHTSSEECSSSSCEEE
T ss_pred HhhheecCCCCCCccc
Confidence 3456788899888 74
No 6
>d1f2na_ b.121.4.7 (A:) Sobemovirus coat protein {RYMV (Rice yellow mottle virus) [TaxId: 31744]}
Probab=1.61 E-value=4.5e+02 Score=22.80 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=13.4
Q ss_pred ccccccc----ceeeecCCcCCC
Q psy14449 651 TLRRWKW----TSYIPFMPTYHP 669 (673)
Q Consensus 651 ~~~~~~~----~~~~p~~p~~~~ 669 (673)
.+.+++| ++|+|.||+-..
T Consensus 45 ~y~kYr~~~l~~~YiP~c~TTt~ 67 (189)
T d1f2na_ 45 CYSMWKPTRWDVVYLPEVSATVA 67 (189)
T ss_dssp TBSEEEESCCEEEEEECSCTTCC
T ss_pred hhhceeeEEEEEEEECCCCCCCC
Confidence 4455555 689999997643
No 7
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.55 E-value=3.7e+02 Score=17.23 Aligned_cols=14 Identities=7% Similarity=0.392 Sum_probs=10.4
Q ss_pred hhhhhhhhhhhhcc
Q psy14449 75 FSTIIMLTVFSQCL 88 (673)
Q Consensus 75 ~~~~~l~vlfsqyl 88 (673)
+|+.+|+++.-|--
T Consensus 17 vPt~FLliLyvqT~ 30 (36)
T d2axtm1 17 VPSVFLIILYVQTE 30 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhheeec
Confidence 57888888877743
No 8
>d1ng0a_ b.121.4.7 (A:) Sobemovirus coat protein {Cocksfoot mottle virus [TaxId: 40979]}
Probab=1.53 E-value=4.8e+02 Score=22.71 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=13.1
Q ss_pred ccccccc----ceeeecCCcCCC
Q psy14449 651 TLRRWKW----TSYIPFMPTYHP 669 (673)
Q Consensus 651 ~~~~~~~----~~~~p~~p~~~~ 669 (673)
.+.+++| ++|+|.||+-..
T Consensus 43 ~y~kYr~~~l~~~YiP~c~Ttt~ 65 (192)
T d1ng0a_ 43 AYALWRPKHWEIVYLPRCSTQTD 65 (192)
T ss_dssp TEEEEEEEEEEEEEEECSCTTCC
T ss_pred hhhceeEEEEEEEEECCCCCCCC
Confidence 4455554 679999998643
No 9
>d1d6ga_ g.33.1.1 (A:) Cholecystokinin A receptor, N-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.48 E-value=7.4e+02 Score=16.59 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=8.9
Q ss_pred CCcccccCCCCC
Q psy14449 179 PDITYGIDDVPP 190 (673)
Q Consensus 179 ~~l~y~v~~~pp 190 (673)
++..||++++.|
T Consensus 24 NeT~~Cld~P~p 35 (47)
T d1d6ga_ 24 NETLFCLDQPRP 35 (47)
T ss_dssp SSCCBSCCCCSS
T ss_pred cceEEEcCCCCC
Confidence 566899988655
No 10
>d1poca_ a.133.1.1 (A:) Phospholipase A2 {European honeybee (Apis mellifera) [TaxId: 7460]}
Probab=1.47 E-value=4.3e+02 Score=21.80 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=17.0
Q ss_pred cccccccccCCCCCCCCCCccccCCC
Q psy14449 622 VAWGEQMKLVSEPTVHGEYNTFDFPV 647 (673)
Q Consensus 622 ~~w~~~~~~~~~~~~~~~~~~y~lp~ 647 (673)
.||.+=.++..|++..+..+.||+|+
T Consensus 108 ~~~~~C~~Y~~d~~~~k~wq~fd~~~ 133 (134)
T d1poca_ 108 RTEGRCLHYTVDKSKPKVYQWFDLRK 133 (134)
T ss_dssp TBTTBCSSCEECTTSCCEEEEECCCC
T ss_pred cccCceeeECcCCCCcceeeeccccc
Confidence 44555445555555557778999996
Done!