RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14449
(673 letters)
>gnl|CDD|216158 pfam00860, Xan_ur_permease, Permease family. This family includes
permeases for diverse substrates such as xanthine,
uracil, and vitamin C. However many members of this
family are functionally uncharacterized and may
transport other substrates. Members of this family have
ten predicted transmembrane helices.
Length = 389
Score = 197 bits (504), Expect = 6e-57
Identities = 123/404 (30%), Positives = 186/404 (46%), Gaps = 48/404 (11%)
Query: 195 IFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQ-NTFGCR 253
+ + LQH L M A + +P ++ AL + +D A +IS + I T +Q FG R
Sbjct: 4 LLLGLQHLLAMFAATIVVPLLVGDALGLGAEDLA--QLISATFLASGIGTLLQTLIFGIR 61
Query: 254 ------------------TMGHTYSESLRS---AGYVGWF-----SPSGVVGVLLKYVTP 287
G + +L A V S +G+ G L + P
Sbjct: 62 LPIYLGSSFAFVTALMIAIGGADWGIALAGLFGAVLVAGVLFTLISFTGLRGRLARLFPP 121
Query: 288 LTIVPTVSLVGLSLFENAAEAASKHWGISVSTIIMLTVFSQCLSEVKVPGINYSKEEGFK 347
+ P V L+GLSL A + A W I+ + L V V + K
Sbjct: 122 VVTGPVVLLIGLSLAPIAVKGAGGGWAIADGLTVGLLDLL--GLAVVVLAVILLLSVFLK 179
Query: 348 IVWFNLFKLFPVLLTIMIMWGICGLLTLTEALPKGHPARTDVKLRILEDSSWFRVPYPGQ 407
F+ P+L+ I+ W + + + P + D+ WF++P+P
Sbjct: 180 ----GFFRQGPILIGIIAGWLLALFMGIVNFSP------------EVMDAPWFQLPHPFP 223
Query: 408 WGTPTVSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLA 467
+GTP + +L +LA L VES +K+ G P + RG+ +GL T+L+
Sbjct: 224 FGTPLFNPGLILTVLAVALVAIVESTGDIRAVAKVSGRDLKPKPDLRRGLLADGLATLLS 283
Query: 468 GLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGG 527
GL+G+ T T+ EN+G + +TKV SRRV A +++L G+I KF A+F IP PV+GG
Sbjct: 284 GLFGA-FPTTTYAENIGVVALTKVYSRRVGVTAGVILILLGLIPKFAALFSSIPSPVLGG 342
Query: 528 IFCVMFGMIAAFGLSALQYVDLNSSRNLYIIGFSMFFSLVLPKW 571
+ VMFGMIA G+S L VDL+S+RNL II S+ L +
Sbjct: 343 VMLVMFGMIAGSGVSNLITVDLDSARNLLIIAVSLVLGLGISTV 386
Score = 31.1 bits (71), Expect = 1.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 27 VVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAASKHWGISSLRQKILYFSTIIMLTV 83
+ G L + P+ P V L+GLSL A + A W I+ L + + V
Sbjct: 111 LRGRLARLFPPVVTGPVVLLIGLSLAPIAVKGAGGGWAIADGLTVGLLDLLGLAVVV 167
>gnl|CDD|225142 COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and
metabolism].
Length = 451
Score = 163 bits (414), Expect = 9e-44
Identities = 114/487 (23%), Positives = 205/487 (42%), Gaps = 97/487 (19%)
Query: 180 DITYGIDDVPPWYLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFV 239
I +D+ P + + LQH L M GA V +P ++ AL + +D A ++IS +
Sbjct: 4 LIYVLVDERLPLGKLLLLGLQHLLAMFGATVLVPLLVGLALGLSAEDTA--YLISADLLA 61
Query: 240 TAIVTFIQ----NTFGCR----------------TMGHTYSESLRSAGYVGWFSPSGVVG 279
+ I T +Q G +G T + + + G + +G+V
Sbjct: 62 SGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGTTGDGIAAL-LGGIIA-AGLVY 119
Query: 280 VLL---------KYVTPLTIVPTVSLVGLSL--------------FENAAEAASKHWGIS 316
L+ + P+ P V ++GLSL N + ++ G++
Sbjct: 120 FLISPIVKIRLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPDFGSLENLGLA 179
Query: 317 VSTIIMLTVFSQCLSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLT 376
+ T++++ + ++ GF + P+L+ +++ + + + +
Sbjct: 180 LVTLLIILLINRFGK-------------GF-------LRRIPILIGLVVGYLLALFMGM- 218
Query: 377 EALPKGHPARTDVKLRILEDSSWFRVPYPGQWGTPTVSLSGVLGMLAGVLACTVESISYY 436
V + ++ WF +P P +G +L ML + VE
Sbjct: 219 ------------VDFSGVAEAPWFALPTPFYFG-MAFDWGAILTMLPVAIVTIVEHTGDI 265
Query: 437 PTTSKMCGAPPPPVHAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRV 496
T ++ G + RG+ +GL T++AGL+G G TF +N+G + +T V SR V
Sbjct: 266 TATGEITGRDLDGKPRLRRGLLADGLATLIAGLFG-GFPNTTFAQNIGVVALTGVYSRYV 324
Query: 497 IQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSALQYVDLNSSR-NL 555
I A +++L G+ KFGA+ IP PV+GG V+FGMIAA G+ L ++ SR NL
Sbjct: 325 IAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLVLFGMIAASGIRILIRNKVDRSRRNL 384
Query: 556 YIIGFSMFFSL---VLPKWMVHNADAIRTGSDIVDSILTVLLSTSILVGGMLGCLLDNLI 612
I+ S+ + +P+ + +R LLS+ I +G + +L+ L+
Sbjct: 385 LIVAVSLGLGIGVGAVPEVFLQLPAWLRP-----------LLSSGIALGTLTAIVLNLLL 433
Query: 613 PGTPEER 619
PG
Sbjct: 434 PGEKRPD 440
>gnl|CDD|234136 TIGR03173, pbuX, xanthine permease. All the seed members of this
model are observed adjacent to genes for either xanthine
phosphoribosyltransferase (for the conversion of
xanthine to guanine, GenProp0696, ) or genes for the
conversion of xanthine to urate and its concomitant
catabolism (GenProp0640, GenProp0688, GenProp0686 and
GenProp0687). A number of sequences scoring higher than
trusted to this model are found in different genomic
contexts, and the possibility exist that these transport
related compounds in addition to or instead of xanthine
itself. The outgroup to this family are sequences which
are characterized as uracil permeases or are adjacent to
established uracil phosphoribosyltransferases.
Length = 406
Score = 147 bits (373), Expect = 1e-38
Identities = 111/455 (24%), Positives = 193/455 (42%), Gaps = 91/455 (20%)
Query: 198 ALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQNT----FGCR 253
LQH L M V++P I+ AL + + A ++IS +F I T IQ FG R
Sbjct: 1 GLQHVLAMYAGAVAVPLIVGGALGLSAEQTA--YLISADLFACGIATLIQTLGIGPFGIR 58
Query: 254 ---TMGHTYSE------------------SLRSAGYVGWFSPSGVVGVLLKYVTPLTIVP 292
G +++ ++ AG + L+++ P+
Sbjct: 59 LPVVQGVSFAAVGPMIAIGAGGGLGAIFGAVIVAGLFV-ILLAPFFSKLVRFFPPVVTGT 117
Query: 293 TVSLVGLSLFE-----------NAAEAASKHWGISVSTIIMLTVFSQCLSEVKVPGINYS 341
++L+GLSL + ++ G+++ T++++ + ++
Sbjct: 118 VITLIGLSLMPVAINWAAGGAGAPDFGSPQNLGLALLTLVIILLLNR------------- 164
Query: 342 KEEGFKIVWFNLF-KLFPVLLTIMIMWGICGLLTLTEALPKGHPARTDVKLRILEDSSWF 400
+ F + VLL +++ + L + V + ++ WF
Sbjct: 165 --------FGKGFLRSIAVLLGLVVGTIVAAALGM-------------VDFSGVAEAPWF 203
Query: 401 RVPYPGQWGTPTVSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIE 460
+P P +G PT L +L M+ L VE+ + ++ G P + G+ +
Sbjct: 204 ALPTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITGRPITE-KDLAGGLRAD 262
Query: 461 GLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIII 520
GLG+ L GL+ + T +F +NVG + +T V SR V+ A +++L G+ K A+ I
Sbjct: 263 GLGSALGGLFNTFPYT-SFSQNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASI 321
Query: 521 PEPVVGGIFCVMFGMIAAFGLSALQYVDLNSSRNLYIIGFSMFFSL---VLPKWMVHNAD 577
P+PV+GG VMFGM+AA G+ L VD + RNL I+ S+ L V+P++
Sbjct: 322 PQPVLGGAGLVMFGMVAASGIRILSKVDFDRRRNLLIVAVSLGLGLGPTVVPEFFSQLPA 381
Query: 578 AIRTGSDIVDSILTVLLSTSILVGGMLGCLLDNLI 612
+T L S+ I VG + LL NL+
Sbjct: 382 WAQT-----------LFSSGIAVGAISAILL-NLL 404
>gnl|CDD|233133 TIGR00801, ncs2, uracil-xanthine permease. The Nucleobase:Cation
Symporter-2 (NCS2) Family (TC 2.A.40) Most of the
functionally characterized members of the NCS2 family
are transporters specific for nucleobases including both
purines and pyrimidines. However, two closely related
rat members of the family, SVCT1 and SVCT2, localized to
different tissues of the body, cotransport L-ascorbate
and Na+ with a high degree of specificity and high
affinity for the vitamin. The NCS2 family appears to be
distantly related to the NCS1 family (TC #2.A.39)
[Transport and binding proteins, Nucleosides, purines
and pyrimidines].
Length = 412
Score = 133 bits (336), Expect = 1e-33
Identities = 116/408 (28%), Positives = 167/408 (40%), Gaps = 67/408 (16%)
Query: 189 PPWYLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQ- 247
PP I + LQH L M G V +P ++ AL + + +++ST + + I T +Q
Sbjct: 2 PPLLQTIVLGLQHLLAMFGGTVLVPLLVGLALGLSAETQ---YLVSTSLLTSGIGTLLQL 58
Query: 248 ---------------------------NTFGCRT-MGHTYSESLRSAGYVGWFSPSGVVG 279
+ G MG + L A G
Sbjct: 59 FRTGGVIGLPSYLGSSFAFVSPMIAIGSGLGIPAIMGGLIATGLVYALLSLLIKKLGT-R 117
Query: 280 VLLKYVTPLTIVPTVSLVGLSLFENAAE-----AASKHWGISVSTIIMLTVFSQCLSEVK 334
L+K P+ P V L+GLSL A + S +G + + V +
Sbjct: 118 WLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEGSGTYGSLENLGVAFVVLA------- 170
Query: 335 VPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTEALPKGHPARTDVKLRIL 394
I+ FK L +I I+ GI L AL G + V
Sbjct: 171 -----------LIILLNRFFK--GFLKSIPILIGILVGYIL--ALAMGIVDFSPVI---- 211
Query: 395 EDSSWFRVPYPGQWGTPTVSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAIN 454
D+ WF +P P +G P+ +L ML + VESI T+ + G ++
Sbjct: 212 -DAPWFALPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDLTATADVSGRDLSGDPRLH 269
Query: 455 RGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFG 514
RG+ +GL TVLAGL+G G TF +N+G I +T+V SR VI A +++ G K
Sbjct: 270 RGVLADGLATVLAGLFG-GFPNTTFAQNIGVIALTRVASRWVIVGAAVILIALGFFPKIA 328
Query: 515 AVFIIIPEPVVGGIFCVMFGMIAAFGLSALQYVDLNSSRNLYIIGFSM 562
A+ IP PV+GG VMFGMIAA G+ L L+ RN II S+
Sbjct: 329 ALITSIPSPVLGGASIVMFGMIAASGIRILIRNKLDYRRNRNIIAASV 376
>gnl|CDD|236744 PRK10720, PRK10720, uracil transporter; Provisional.
Length = 428
Score = 91.6 bits (228), Expect = 1e-19
Identities = 99/420 (23%), Positives = 165/420 (39%), Gaps = 86/420 (20%)
Query: 182 TYGIDDVPPWYLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTA 241
G+ + PP I ++LQH M GA V +P + +PA T++
Sbjct: 4 AIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILF-------HINPA------TVLLFNG 50
Query: 242 IVTFIQNTFGCRTMGHTYSES----------LRSAGY---VGWFSPSGVVGVLLKYVT-- 286
I T + F C+ Y S L GY +G F GV+ L+ +
Sbjct: 51 IGTLLY-LFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVALIVKK 109
Query: 287 -----------PLTIVPTVSLVGLSLFENAAEAASKHWGISVS------TIIMLTVFSQC 329
P + V+++GL L AA A + I M+T+
Sbjct: 110 AGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISMVTLAVTV 169
Query: 330 LSEVKVPGINYSKEEGFKIVWFNLFKLFPVLLTIMIMWGICGLLTLTEALPKGHPARTDV 389
L V G + P+L+ +++ + + + + V
Sbjct: 170 LGSVLFRG---------------FLAIIPILIGVLVGYALSFAMGM-------------V 201
Query: 390 KLRILEDSSWFRVPYPGQWGTPTVSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPP 449
+ ++ WF +P + TP +L +L L E + + T+ +
Sbjct: 202 DTTPIIEAHWFALP---TFYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLR 258
Query: 450 VHAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGI 509
++R + GL TV++G +GS T T+GEN+G + +T+V S VI A + +L
Sbjct: 259 DPGLHRSMFANGLSTVISGFFGSTPNT-TYGENIGVMAITRVYSTWVIGGAAIIAILLSC 317
Query: 510 INKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSAL--QYVDLNSSRNL------YIIGFS 561
+ K A IP PV+GG+ +++G+I A G+ L VD N ++NL IIG S
Sbjct: 318 VGKLAAAIQAIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVS 377
>gnl|CDD|132655 TIGR03616, RutG, pyrimidine utilization transport protein G. This
protein is observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the uracil-xanthine permease
family defined by TIGR00801. As well as the The
Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Length = 429
Score = 75.7 bits (186), Expect = 2e-14
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 8/202 (3%)
Query: 363 IMIMWGICGLLTLTEALPKGHPARTDVKLRILEDSSWFRVPYPGQWGTPTVSLSGVLGML 422
++I+ G+ L V + ++WF +P + TP + + +L +
Sbjct: 197 LLILVGLIAAYLAYFILTNVFGLGKAVDFSPISQAAWFGLP---NFHTPVFNANAMLLIA 253
Query: 423 AGVLACTVESISYYPTTSKMCGAPPPPVHAINRGIAIEGLGTVLAGLWGSGNGTNTFGEN 482
L E++ ++ + M G P + R +GL T+L+G G G G T+ EN
Sbjct: 254 PVALILVAENLGHFKAVAGMTGRNLDPY--MGRAFVGDGLATMLSGSVG-GTGVTTYAEN 310
Query: 483 VGAIGVTKVGSRRVIQYACALMLLQGIINKFGAVFIIIPEPVVGGIFCVMFGMIAAFG-- 540
+G + VTKV S V A +L G KFGA+ IP V+GG V+FG+IA G
Sbjct: 311 IGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGAR 370
Query: 541 LSALQYVDLNSSRNLYIIGFSM 562
+ VDL + NL ++ ++
Sbjct: 371 IWVQNKVDLTQNGNLIMVAVTL 392
>gnl|CDD|183124 PRK11412, PRK11412, putative uracil/xanthine transporter;
Provisional.
Length = 433
Score = 45.2 bits (107), Expect = 1e-04
Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 9/159 (5%)
Query: 455 RGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFG 514
R G T++ + F ++G + T RR Y + LL +I
Sbjct: 279 RSFVATGFMTLITVPLAVIPFS-PFVSSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALT 337
Query: 515 AVFIIIPEPVVGGIFCVMFGMIAAFGLSALQYVDLNSSRNLYIIGFSMFFSLVLPKWMVH 574
+F IP PV + V + + L Q + +RN+Y + +F + L M
Sbjct: 338 RLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQITFT-ARNIYRLALPLFVGIFL---MAL 393
Query: 575 NADAIRTGSDIVDSILTVLLSTSILVGGMLGCLLDNLIP 613
++ + L LLS +LVG +L L++NLIP
Sbjct: 394 PPVYLQD----LPLTLRPLLSNGLLVGILLAVLMENLIP 428
>gnl|CDD|218624 pfam05529, Bap31, B-cell receptor-associated protein 31-like.
Bap31 is a polytopic integral protein of the endoplasmic
reticulum membrane and a substrate of caspase-8. Bap31
is cleaved within its cytosolic domain, generating
pro-apoptotic p20 Bap31.
Length = 149
Score = 32.9 bits (76), Expect = 0.21
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 551 SSRNLYIIGFSMFFSLVLP 569
+ RNLY+ GF++F +LV+
Sbjct: 101 AQRNLYLSGFTLFLTLVIR 119
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 32.0 bits (73), Expect = 1.0
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 83 VFSQ-CLSEVKLPGINYSKEEGFKIVWFNLFKLFPVLGLVDQNGHSKSSEKIE 134
VFSQ L E+ G+ S+E+ +KIV N K++ L Q G + +EK E
Sbjct: 352 VFSQRVLLELPKKGV--SREDAYKIVQRNAMKVWEDL----QQGKAAINEKGE 398
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 31.2 bits (71), Expect = 2.1
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 20/136 (14%)
Query: 192 YLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTFIQNTFG 251
L + + +L + + I L L ++ T F ++ + T
Sbjct: 788 LLSAILFILTFL--LYLLGFIANTLGLDLFQA--------LLQTTAFTVLVLIQLLLTLA 837
Query: 252 CRTMGH-TYSESLRSAGYVGWFSPSGVVGVLLKYVTPLTIVPTVSLVGLSLFENAAEAAS 310
R+ G S L S Y+ ++ LL P + LSLFE
Sbjct: 838 VRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFE------- 890
Query: 311 KHWGISVSTIIMLTVF 326
W I+++ ++L
Sbjct: 891 --WLIAIAVALLLLYI 904
>gnl|CDD|220672 pfam10277, Frag1, Frag1/DRAM/Sfk1 family. This family includes
Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor
activating protein 1) is a protein that is conserved
from fungi to humans. There are four potential
iso-prenylation sites throughout the peptide, viz CILW,
CIIW and CIGL. Frag1 is a membrane-spanning protein that
is ubiquitously expressed in adult tissues suggesting an
important cellular function. Dram is a family of
proteins conserved from nematodes to humans with six
hydrophobic transmembrane regions and an Endoplasmic
Reticulum signal peptide. It is a lysosomal protein that
induces macro-autophagy as an effector of p53-mediated
death, where p53 is the tumour-suppressor gene that is
frequently mutated in cancer. Expression of Dram is
stress-induced. This region is also part of a family of
small plasma membrane proteins, referred to as Sfk1,
that may act together with or upstream of Stt4p to
generate normal levels of the essential phospholipid
PI4P, thus allowing proper localisation of Stt4p to the
actin cytoskeleton.
Length = 216
Score = 30.7 bits (70), Expect = 2.1
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 527 GIFCVMFGMIAAFGLSALQYVDLNSSRNLYIIGFSMFFSLVLPKWMV 573
I ++FG+I A GL + +++ IG +FF L +M+
Sbjct: 91 NILALVFGIIGALGLGGVANFQSTEDHDVHDIGAILFFVGGLL-YML 136
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed.
Length = 426
Score = 30.1 bits (69), Expect = 4.1
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 63 WGISSLRQKILYFSTIIMLTVFSQCLSEVKLPGINYSKEEGFKIVWFNLFK--LFPVLGL 120
+ I LR++IL+ T+ L VF + S + +PGI+ + LF +LGL
Sbjct: 9 FKIKELRKRILF--TLGALIVF-RIGSYIPVPGIDPA-------ALAQLFDQQSGGILGL 58
Query: 121 VD 122
+
Sbjct: 59 FN 60
>gnl|CDD|198428 cd10030, UDG_F4_TTUDGA_like, Family 4 Uracil-DNA glycosylase (UDG),
found exclusively in thermophilic organisms. The
enzymes of Family 4 Uracil-DNA glycosylase (UDG), found
only in thermophilic organisms, are thermostable
enzymes. Uracil-DNA glycosylases (UDGs) are DNA repair
enzymes that catalyze the removal of mismatched uracil
from DNA to initiate DNA base excision repair pathway.
The Thermus thermophilus enzyme TTUDGA removes uracil
from both, ssDNA and dsDNA, but not thymine from a G:T
mismatch. These details suggest that the mechanism by
which Family 4 UDGs remove uracils from DNA is similar
to that of Family 1 enzymes. The thermostability of the
enzyme may be linked to the presence of an iron-sulfur
cluster, salt-bridges and ion pairs on the molecular
surface as well as prolines on loops and turns, as
commonly found in the Family 4 enzymes. Uracil in DNA
can arise as a result of mis-incorporation of dUMP
residues by DNA polymerase or deamination of cytosine.
Uracil mispaired with guanine in DNA is one of the major
pro-mutagenic events, causing G:C->A:T mutations.
Length = 164
Score = 29.0 bits (66), Expect = 5.0
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 643 FDFPVGMATLR-RWKWTSYIPFMPTYHP 669
G+ LR +W IP +PTYHP
Sbjct: 116 LGKKFGITRLRGKWHEYEGIPVLPTYHP 143
>gnl|CDD|131051 TIGR01996, PTS-II-BC-sucr, PTS system, sucrose-specific IIBC
component. This model represents the fused enzyme II B
and C components of the sucrose-specific PTS sugar
transporter system. Sucrose is converted to
sucrose-6-phosphate in the process of translocation into
the cell. Some of these transporters lack their own IIA
domains and instead use the glucose IIA protein (IIAglc
or Crr). The exceptions to this rule are Staphylococci,
Streptococci, Lactococci, Lactobacilli, etc. which
contain their own A domain as a C-terminal fusion. This
family is closely related to the trehalose transporting
PTS IIBC enzymes and the B and C domains of each are
described by subfamily-domain level TIGRFAMs models
(TIGR00826 and TIGR00852, respectively).
Length = 461
Score = 29.2 bits (66), Expect = 7.4
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 471 GSGNGTNTFGENVGAIGVTKVGSRRVIQYACALM-LLQGIINKFGAVFI-IIPEPVVGGI 528
G+G + E V G+++ + A M Q +F+ IIP V G+
Sbjct: 65 GTGVVNKVYDEIVKLTGLSESSTSEQKAEAAKKMNPFQRFARTLSDIFVPIIPAIVATGL 124
Query: 529 FCVMFGMIAAFGLSALQYVDLNSSRNLYIIGFSMF 563
+ GM+ AFGL L V + ++F
Sbjct: 125 LMGLNGMLTAFGLFGLSGVSVAPIPEGLAEMINVF 159
>gnl|CDD|216018 pfam00606, Glycoprotein_B, Herpesvirus Glycoprotein B. This family
of proteins contains a transmembrane region.
Length = 711
Score = 29.1 bits (66), Expect = 9.4
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 21/88 (23%)
Query: 450 VHAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGI 509
+ NR + GL GL G G V + VGS ++ G+
Sbjct: 613 IDNDNRPAFVRGLDDFFQGLGAVGKA---VGNVVSGVA-GAVGS-----------IVSGV 657
Query: 510 I----NKFGAVFIIIPEPVVGGIFCVMF 533
+ N FG + II+ V+ G+ V
Sbjct: 658 VSFLKNPFGGLLIIL--LVLAGLVAVFL 683
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.434
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,947,648
Number of extensions: 3519983
Number of successful extensions: 3272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3244
Number of HSP's successfully gapped: 61
Length of query: 673
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 570
Effective length of database: 6,369,140
Effective search space: 3630409800
Effective search space used: 3630409800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)