RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14449
         (673 letters)



>d1nuwa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 328

 Score = 31.8 bits (72), Expect = 0.27
 Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 21/150 (14%)

Query: 451 HAINRGIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGII 510
            A+ +          +A L+G    TN  G+ V  +    V S  ++           ++
Sbjct: 39  TAVRKAG--------IAHLYGIAGSTNVTGDQVKKL---DVLSNDLVINVLKSSFATCVL 87

Query: 511 NKFGAVFIIIPEPVVGGIFCVMFGMIAAFGLSALQYVDLNSSRNLYIIGFSMFFSLVLPK 570
                   II EP   G + V F       L     +D   S     IG           
Sbjct: 88  VSEEDKNAIIVEPEKRGKYVVCFD-----PLDGSSNIDCLVS-----IGTIFGIYRKNST 137

Query: 571 WMVHNADAIRTGSDIVDSILTVLLSTSILV 600
                 DA++ G ++V +   +  S ++LV
Sbjct: 138 DEPSEKDALQPGRNLVAAGYALYGSATMLV 167


>g1h8d.1 b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 289

 Score = 30.1 bits (66), Expect = 0.88
 Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 7/177 (3%)

Query: 171 SSEKIEDRPDITYGIDDVP---PWYLCIFMALQHYLTMIGAIVSIPFILTPALCMREDDP 227
             E +E    I  G D      PW + +F      L    +++S  ++LT A C+     
Sbjct: 20  ERELLESYISIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW 79

Query: 228 ARGHIISTMIFVTAIVTFIQNTFGCRTMGHTYSESLRSAGYVGWFSPSGVVGVLLKYVTP 287
            +    + ++      +  +       +       +             +  + LK   P
Sbjct: 80  DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLK--KP 137

Query: 288 LTIVPTVSLVGLSLFENAAEAASKHWGISVS--TIIMLTVFSQCLSEVKVPGINYSK 342
           +     +  V L   E AA      +   V+    +  T     L  V +P +    
Sbjct: 138 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQPSVLQVVNLPIVERPV 194


>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 29.3 bits (65), Expect = 1.6
 Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 3/70 (4%)

Query: 189 PPWYLCIFMALQHYLTMI---GAIVSIPFILTPALCMREDDPARGHIISTMIFVTAIVTF 245
              +  +    +  L  I    A +S                    +I  ++   AIV  
Sbjct: 47  KSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGV 106

Query: 246 IQNTFGCRTM 255
            Q       +
Sbjct: 107 WQERNAENAI 116


>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
           [TaxId: 562]}
          Length = 444

 Score = 28.6 bits (63), Expect = 2.4
 Identities = 23/145 (15%), Positives = 42/145 (28%), Gaps = 11/145 (7%)

Query: 396 DSSWFRVPYPGQWGTPTVSLSGVLGMLAGVLACTVESISYYPTTSKMCGAPPPPVHAINR 455
           + +   V         T+ L  +LG++ G+                           +  
Sbjct: 219 EVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLM 278

Query: 456 GIAIEGLGTVLAGLWGSGNGTNTFGENVGAIGVTKVGSRRVIQYACALMLLQGIINKFGA 515
           G AI GL  +L  +  + +G       +   G   +G           ML+   + +   
Sbjct: 279 GGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMG-----------MLVFIFVARVIT 327

Query: 516 VFIIIPEPVVGGIFCVMFGMIAAFG 540
             +       GGIF  M  +    G
Sbjct: 328 TLLCFSSGAPGGIFAPMLALGTVLG 352


>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 229

 Score = 27.2 bits (60), Expect = 5.4
 Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 18/106 (16%)

Query: 520 IPEPVVGGIFCVMFGMIAAFGLSA----LQYVDLNSSRNLYIIGFSMFFSLVLPKWMVHN 575
           +P PV   +             +     ++    + + ++Y +           K  + N
Sbjct: 44  VPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSSVYFM-----------KQTISN 92

Query: 576 ADAIRTGSDIVDSILTVLLSTSILVGGMLGCLLDNLIPGTPEERGL 621
           A        ++ +I           G  L   L+  +  +PEER  
Sbjct: 93  ACGTIG---LIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERAR 135


>d2g2ub1 d.98.1.1 (B:1-165) beta-lactamase-inhibitor protein, BLIP
           {Streptomyces clavuligerus [TaxId: 1901]}
          Length = 165

 Score = 26.9 bits (59), Expect = 6.3
 Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 3/33 (9%)

Query: 558 IGFSMFFSLVLPKWMVHNADAIRTGSDIVDSIL 590
           I F M    V     +  A+   TG    DSI 
Sbjct: 12  IQFGMTRQQV---LDIAGAENCETGGSFGDSIH 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,573,073
Number of extensions: 122227
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 9
Length of query: 673
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 582
Effective length of database: 1,158,166
Effective search space: 674052612
Effective search space used: 674052612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)