Query psy14454
Match_columns 117
No_of_seqs 25 out of 27
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 20:15:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11637 AmiB activator; Provi 91.0 3.9 8.6E-05 34.5 10.5 73 9-81 45-120 (428)
2 PF10473 CENP-F_leu_zip: Leuci 86.8 12 0.00026 28.5 11.7 58 24-81 40-97 (140)
3 PF08317 Spc7: Spc7 kinetochor 85.7 16 0.00034 30.2 10.5 77 5-81 178-261 (325)
4 PF00038 Filament: Intermediat 84.7 18 0.00039 28.7 12.8 74 34-112 207-280 (312)
5 PRK10884 SH3 domain-containing 80.8 22 0.00047 28.3 9.2 13 15-27 97-109 (206)
6 PRK10884 SH3 domain-containing 80.1 28 0.00061 27.7 10.5 77 6-82 95-171 (206)
7 PRK09039 hypothetical protein; 79.5 24 0.00051 29.7 9.5 46 37-82 138-183 (343)
8 PF12777 MT: Microtubule-bindi 79.0 16 0.00036 30.2 8.3 54 29-82 256-309 (344)
9 PRK13729 conjugal transfer pil 78.1 7.4 0.00016 35.1 6.4 50 5-54 70-122 (475)
10 PF14197 Cep57_CLD_2: Centroso 77.8 11 0.00023 25.4 5.7 42 41-82 3-44 (69)
11 TIGR02168 SMC_prok_B chromosom 77.2 39 0.00085 30.5 10.6 8 65-72 755-762 (1179)
12 PF09730 BicD: Microtubule-ass 76.7 30 0.00065 32.7 10.1 69 14-82 394-465 (717)
13 PF15188 CCDC-167: Coiled-coil 75.7 9 0.00019 27.2 5.1 47 36-82 5-61 (85)
14 TIGR02680 conserved hypothetic 75.4 33 0.00072 33.8 10.4 73 8-80 893-965 (1353)
15 PF07888 CALCOCO1: Calcium bin 75.2 52 0.0011 30.3 11.0 51 32-82 300-350 (546)
16 KOG0977|consensus 74.1 26 0.00057 32.1 8.8 68 16-83 90-160 (546)
17 PF13514 AAA_27: AAA domain 72.1 62 0.0013 30.9 11.1 109 3-112 149-263 (1111)
18 PRK09039 hypothetical protein; 71.5 61 0.0013 27.3 11.3 31 49-79 122-152 (343)
19 PF04111 APG6: Autophagy prote 69.6 19 0.00042 29.9 6.5 25 3-27 8-32 (314)
20 PF10146 zf-C4H2: Zinc finger- 69.4 60 0.0013 26.3 9.6 62 24-85 48-110 (230)
21 PF00038 Filament: Intermediat 69.3 55 0.0012 25.9 12.3 103 8-115 72-179 (312)
22 PF13851 GAS: Growth-arrest sp 68.2 28 0.00061 27.2 6.8 96 16-114 10-109 (201)
23 PF12718 Tropomyosin_1: Tropom 67.4 49 0.0011 24.6 8.7 62 12-81 29-90 (143)
24 PF12325 TMF_TATA_bd: TATA ele 66.8 49 0.0011 24.4 9.4 43 35-77 22-64 (120)
25 PF14817 HAUS5: HAUS augmin-li 63.6 45 0.00097 31.0 8.1 53 31-83 81-134 (632)
26 smart00787 Spc7 Spc7 kinetocho 63.1 91 0.002 26.2 9.7 49 34-82 216-264 (312)
27 TIGR01010 BexC_CtrB_KpsE polys 62.3 56 0.0012 26.7 7.8 48 8-55 181-233 (362)
28 KOG0976|consensus 61.1 97 0.0021 30.9 10.1 69 14-82 266-341 (1265)
29 TIGR03185 DNA_S_dndD DNA sulfu 61.0 54 0.0012 29.4 8.0 67 12-80 399-465 (650)
30 KOG0963|consensus 59.4 1.6E+02 0.0035 27.8 11.2 49 35-83 227-275 (629)
31 PF05266 DUF724: Protein of un 59.4 53 0.0012 25.8 6.9 47 35-81 130-183 (190)
32 PF02050 FliJ: Flagellar FliJ 58.6 48 0.001 21.5 8.9 54 29-82 12-70 (123)
33 PF06428 Sec2p: GDP/GTP exchan 57.8 68 0.0015 23.0 7.0 51 33-83 12-63 (100)
34 PRK11020 hypothetical protein; 57.4 69 0.0015 24.3 6.9 56 34-90 3-63 (118)
35 KOG2264|consensus 56.8 82 0.0018 30.3 8.7 43 40-82 104-146 (907)
36 TIGR01808 CM_M_hiGC-arch monof 54.9 61 0.0013 21.6 6.2 39 44-82 1-39 (74)
37 PF10174 Cast: RIM-binding pro 54.6 1.5E+02 0.0033 28.3 10.1 51 30-80 330-380 (775)
38 PF09730 BicD: Microtubule-ass 54.3 1E+02 0.0022 29.2 8.9 46 31-76 71-116 (717)
39 PRK02224 chromosome segregatio 53.7 1.8E+02 0.0039 26.6 10.3 42 36-77 251-292 (880)
40 PF07888 CALCOCO1: Calcium bin 53.5 1.4E+02 0.0031 27.6 9.4 68 8-75 336-403 (546)
41 PF15619 Lebercilin: Ciliary p 53.4 1.1E+02 0.0024 24.1 9.6 73 8-80 115-187 (194)
42 PF11932 DUF3450: Protein of u 52.8 1.1E+02 0.0024 24.0 10.2 48 31-78 51-98 (251)
43 PF04508 Pox_A_type_inc: Viral 52.6 14 0.00031 20.7 2.0 17 37-53 2-18 (23)
44 PF09789 DUF2353: Uncharacteri 52.3 68 0.0015 27.6 6.9 58 3-60 29-103 (319)
45 TIGR03752 conj_TIGR03752 integ 51.1 1.6E+02 0.0036 26.7 9.4 69 9-80 71-139 (472)
46 PF14197 Cep57_CLD_2: Centroso 50.8 74 0.0016 21.3 9.0 64 14-81 1-64 (69)
47 PF14915 CCDC144C: CCDC144C pr 50.5 1.7E+02 0.0036 25.4 9.1 33 30-62 78-110 (305)
48 PF12325 TMF_TATA_bd: TATA ele 50.1 1E+02 0.0022 22.8 6.7 27 5-31 17-43 (120)
49 PRK09859 multidrug efflux syst 49.3 1.2E+02 0.0025 25.1 7.7 70 6-83 101-170 (385)
50 PF10458 Val_tRNA-synt_C: Valy 49.1 32 0.00069 22.2 3.6 26 35-60 3-28 (66)
51 PRK04863 mukB cell division pr 48.9 3E+02 0.0065 28.2 11.6 55 35-89 382-439 (1486)
52 PRK02224 chromosome segregatio 48.4 2.1E+02 0.0046 26.1 9.7 46 35-80 645-690 (880)
53 PF05701 WEMBL: Weak chloropla 47.6 1.9E+02 0.004 25.7 9.1 27 38-64 339-365 (522)
54 TIGR02680 conserved hypothetic 47.3 2.4E+02 0.0052 28.1 10.6 71 8-78 900-970 (1353)
55 PF05701 WEMBL: Weak chloropla 46.9 2.1E+02 0.0045 25.4 11.2 48 35-82 301-348 (522)
56 PRK07857 hypothetical protein; 46.4 1.1E+02 0.0024 22.3 6.4 40 43-82 28-67 (106)
57 PRK06285 chorismate mutase; Pr 46.1 69 0.0015 22.1 5.1 41 42-82 6-46 (96)
58 PF12711 Kinesin-relat_1: Kine 45.7 88 0.0019 22.2 5.6 40 36-76 24-63 (86)
59 PF05700 BCAS2: Breast carcino 45.5 1.5E+02 0.0032 23.3 9.9 68 12-79 144-211 (221)
60 PF04111 APG6: Autophagy prote 45.1 1.4E+02 0.003 24.9 7.6 12 39-50 60-71 (314)
61 PF11559 ADIP: Afadin- and alp 45.1 1.2E+02 0.0025 22.0 11.1 56 27-82 57-112 (151)
62 PF14915 CCDC144C: CCDC144C pr 44.9 2.1E+02 0.0045 24.8 10.0 77 6-82 188-275 (305)
63 PF00261 Tropomyosin: Tropomyo 43.8 1.4E+02 0.003 23.5 7.1 55 7-61 4-61 (237)
64 PF15294 Leu_zip: Leucine zipp 43.6 92 0.002 26.4 6.3 47 34-80 130-176 (278)
65 smart00787 Spc7 Spc7 kinetocho 43.6 2E+02 0.0043 24.2 10.5 35 44-78 205-239 (312)
66 PF05103 DivIVA: DivIVA protei 43.4 37 0.00079 23.5 3.4 52 28-79 24-75 (131)
67 PF04880 NUDE_C: NUDE protein, 43.1 23 0.00049 27.8 2.5 45 6-59 9-53 (166)
68 PRK14472 F0F1 ATP synthase sub 42.9 1.4E+02 0.003 22.3 8.7 62 6-67 65-131 (175)
69 KOG4643|consensus 42.2 3E+02 0.0066 27.9 10.2 74 9-82 441-527 (1195)
70 PRK12704 phosphodiesterase; Pr 41.9 2.6E+02 0.0056 25.1 10.4 16 15-30 61-76 (520)
71 PHA02562 46 endonuclease subun 41.4 2.2E+02 0.0049 24.2 9.8 36 45-80 353-388 (562)
72 PF04849 HAP1_N: HAP1 N-termin 41.2 2.3E+02 0.005 24.3 9.7 79 29-114 206-285 (306)
73 KOG2391|consensus 41.2 1.5E+02 0.0033 26.2 7.4 52 31-82 220-271 (365)
74 PHA02562 46 endonuclease subun 41.0 2.3E+02 0.0049 24.2 10.0 67 12-79 307-373 (562)
75 TIGR01795 CM_mono_cladeE monof 40.8 1.2E+02 0.0027 21.1 6.9 58 43-110 3-60 (94)
76 KOG2778|consensus 40.8 23 0.00049 30.8 2.3 52 17-68 227-282 (328)
77 TIGR01805 CM_mono_grmpos monof 40.6 67 0.0014 21.3 4.2 39 45-83 1-39 (81)
78 KOG0933|consensus 40.2 2.4E+02 0.0053 28.5 9.3 66 12-77 788-856 (1174)
79 PF05266 DUF724: Protein of un 40.1 1.8E+02 0.0039 22.8 10.1 29 28-56 151-179 (190)
80 PF13870 DUF4201: Domain of un 40.1 1.6E+02 0.0034 22.0 7.8 103 12-115 57-169 (177)
81 TIGR03185 DNA_S_dndD DNA sulfu 40.1 2.8E+02 0.0061 24.9 9.9 72 7-78 401-477 (650)
82 PF05529 Bap31: B-cell recepto 39.8 1.6E+02 0.0035 22.1 8.0 39 34-79 152-190 (192)
83 PF05546 She9_MDM33: She9 / Md 39.3 1.3E+02 0.0029 24.5 6.4 35 35-69 45-79 (207)
84 TIGR01799 CM_T chorismate muta 39.1 70 0.0015 21.3 4.1 38 45-82 1-38 (83)
85 PRK09239 chorismate mutase; Pr 39.1 1.4E+02 0.0031 21.2 7.4 46 37-82 4-49 (104)
86 TIGR00219 mreC rod shape-deter 38.6 1.1E+02 0.0024 25.1 6.0 45 29-76 66-110 (283)
87 PRK14127 cell division protein 38.4 1.6E+02 0.0034 21.6 7.8 16 65-80 86-101 (109)
88 PF09726 Macoilin: Transmembra 37.8 2.7E+02 0.0057 26.2 8.9 33 48-80 543-575 (697)
89 PRK03918 chromosome segregatio 37.7 3.1E+02 0.0068 24.8 10.3 40 33-72 235-274 (880)
90 PRK07248 hypothetical protein; 37.7 1E+02 0.0022 20.6 4.8 39 45-83 3-41 (87)
91 KOG2264|consensus 37.7 1.2E+02 0.0026 29.3 6.6 48 6-57 95-142 (907)
92 PRK10559 p-hydroxybenzoic acid 37.4 2.2E+02 0.0049 23.1 8.1 34 49-82 121-154 (310)
93 PRK15030 multidrug efflux syst 37.3 1.8E+02 0.0039 24.2 7.1 35 49-83 140-174 (397)
94 KOG0977|consensus 36.6 3.1E+02 0.0067 25.4 8.9 95 13-112 244-360 (546)
95 PF12718 Tropomyosin_1: Tropom 35.9 1.8E+02 0.004 21.6 7.7 57 9-65 5-64 (143)
96 PF13815 Dzip-like_N: Iguana/D 35.3 1.6E+02 0.0035 20.9 5.8 41 39-79 76-116 (118)
97 COG4942 Membrane-bound metallo 35.0 3.4E+02 0.0073 24.4 9.3 17 63-79 111-127 (420)
98 TIGR01801 CM_A chorismate muta 34.8 1E+02 0.0022 21.8 4.6 40 43-82 4-43 (102)
99 PF15397 DUF4618: Domain of un 34.5 2.8E+02 0.006 23.2 8.1 61 22-82 56-131 (258)
100 TIGR01807 CM_P2 chorismate mut 34.4 90 0.002 20.4 4.0 38 45-82 1-40 (76)
101 PF11180 DUF2968: Protein of u 33.7 2.6E+02 0.0056 22.7 8.6 57 24-80 114-170 (192)
102 PF13747 DUF4164: Domain of un 33.0 1.7E+02 0.0037 20.3 8.4 64 12-76 16-79 (89)
103 KOG0250|consensus 32.9 5.1E+02 0.011 26.2 10.2 70 8-77 369-449 (1074)
104 PF08172 CASP_C: CASP C termin 32.3 1.4E+02 0.003 24.4 5.5 43 35-77 92-134 (248)
105 PF12128 DUF3584: Protein of u 32.1 5E+02 0.011 25.5 11.8 55 6-60 251-305 (1201)
106 PRK10476 multidrug resistance 31.6 2.8E+02 0.0061 22.4 7.3 19 6-24 88-106 (346)
107 TIGR03007 pepcterm_ChnLen poly 31.3 2.6E+02 0.0055 23.8 7.2 22 7-28 171-192 (498)
108 PF02403 Seryl_tRNA_N: Seryl-t 31.3 1.7E+02 0.0037 19.9 7.8 55 27-81 34-91 (108)
109 PF07989 Microtub_assoc: Micro 30.8 89 0.0019 21.2 3.6 26 34-59 48-73 (75)
110 KOG4196|consensus 30.6 2E+02 0.0044 22.2 5.9 42 13-58 76-117 (135)
111 PF06305 DUF1049: Protein of u 30.3 86 0.0019 19.5 3.3 24 25-48 44-67 (68)
112 KOG0250|consensus 30.2 2.6E+02 0.0057 28.1 7.8 57 27-83 659-715 (1074)
113 PRK10622 pheA bifunctional cho 30.2 2.1E+02 0.0046 24.6 6.5 40 43-82 5-44 (386)
114 PRK06669 fliH flagellar assemb 30.1 2.9E+02 0.0063 22.1 10.3 61 13-73 87-153 (281)
115 KOG1772|consensus 29.9 98 0.0021 23.1 3.9 30 22-54 24-53 (108)
116 PF12711 Kinesin-relat_1: Kine 29.9 2.1E+02 0.0045 20.3 7.6 62 12-80 25-86 (86)
117 PRK09841 cryptic autophosphory 29.3 4.5E+02 0.0098 24.1 11.2 21 7-27 277-297 (726)
118 PF11544 Spc42p: Spindle pole 29.2 1.3E+02 0.0028 21.1 4.2 44 28-78 11-54 (76)
119 TIGR00999 8a0102 Membrane Fusi 28.9 2.5E+02 0.0055 21.1 6.7 19 11-29 23-41 (265)
120 PRK09973 putative outer membra 28.8 2E+02 0.0043 20.5 5.2 40 37-76 25-71 (85)
121 COG0419 SbcC ATPase involved i 28.2 5.1E+02 0.011 24.4 9.9 70 13-82 370-442 (908)
122 PF04728 LPP: Lipoprotein leuc 28.2 1.8E+02 0.004 19.2 5.9 19 57-75 31-49 (56)
123 PF05837 CENP-H: Centromere pr 28.2 2.2E+02 0.0047 20.1 6.1 46 37-82 4-49 (106)
124 COG1196 Smc Chromosome segrega 28.1 5.7E+02 0.012 24.9 10.5 50 32-81 866-915 (1163)
125 PF09787 Golgin_A5: Golgin sub 28.0 2.6E+02 0.0057 24.6 6.9 71 7-77 224-301 (511)
126 PF11932 DUF3450: Protein of u 27.8 3E+02 0.0065 21.6 10.3 42 37-78 43-84 (251)
127 PF08317 Spc7: Spc7 kinetochor 27.7 3.5E+02 0.0076 22.3 12.2 38 43-80 209-246 (325)
128 PRK14140 heat shock protein Gr 27.4 3.2E+02 0.0068 21.7 6.7 66 5-81 38-105 (191)
129 PF11068 YlqD: YlqD protein; 26.9 2.7E+02 0.0059 20.8 9.0 35 12-46 17-51 (131)
130 COG1196 Smc Chromosome segrega 26.4 6.1E+02 0.013 24.7 10.5 19 62-80 756-774 (1163)
131 TIGR01791 CM_archaeal chorisma 26.3 2E+02 0.0042 18.9 6.1 38 45-82 1-38 (83)
132 COG1579 Zn-ribbon protein, pos 26.0 3.8E+02 0.0082 22.1 8.5 30 30-59 53-82 (239)
133 PF14662 CCDC155: Coiled-coil 25.6 3.7E+02 0.0079 21.8 10.2 47 16-62 16-62 (193)
134 COG2433 Uncharacterized conser 25.6 6E+02 0.013 24.3 9.4 50 29-82 443-492 (652)
135 PF04350 PilO: Pilus assembly 25.4 78 0.0017 21.9 2.7 67 7-82 2-68 (144)
136 KOG0161|consensus 25.3 8.7E+02 0.019 26.1 11.8 78 5-82 895-975 (1930)
137 PF10186 Atg14: UV radiation r 25.1 3.2E+02 0.0069 21.0 10.4 16 7-22 30-45 (302)
138 PF05055 DUF677: Protein of un 25.0 4.4E+02 0.0096 22.6 7.8 66 27-93 255-330 (336)
139 KOG0994|consensus 24.8 1.8E+02 0.0039 30.2 5.8 47 5-52 1701-1747(1758)
140 KOG0995|consensus 24.8 5.2E+02 0.011 24.3 8.4 65 7-71 297-367 (581)
141 PF09486 HrpB7: Bacterial type 24.7 3.3E+02 0.0072 21.1 8.1 47 29-75 8-54 (158)
142 PF10186 Atg14: UV radiation r 24.6 3.3E+02 0.0071 20.9 10.3 11 19-29 35-45 (302)
143 PF14357 DUF4404: Domain of un 24.5 2.4E+02 0.0052 19.3 5.5 69 40-117 1-69 (85)
144 PRK14471 F0F1 ATP synthase sub 24.3 2.9E+02 0.0063 20.2 8.7 60 8-67 57-121 (164)
145 COG1579 Zn-ribbon protein, pos 24.3 4.1E+02 0.0089 21.9 8.7 59 17-75 65-128 (239)
146 PF10174 Cast: RIM-binding pro 24.0 6.5E+02 0.014 24.2 9.9 52 32-83 367-418 (775)
147 PF06818 Fez1: Fez1; InterPro 24.0 2.7E+02 0.0058 22.6 5.8 42 32-73 20-61 (202)
148 TIGR01797 CM_P_1 chorismate mu 24.0 1.9E+02 0.0041 19.3 4.2 37 46-82 2-38 (83)
149 PF14662 CCDC155: Coiled-coil 23.8 4E+02 0.0086 21.6 7.3 71 40-110 19-104 (193)
150 PRK09174 F0F1 ATP synthase sub 23.7 3.6E+02 0.0079 21.1 8.7 63 5-67 99-166 (204)
151 PF04977 DivIC: Septum formati 23.5 2E+02 0.0043 18.0 4.6 27 34-60 22-48 (80)
152 TIGR00414 serS seryl-tRNA synt 23.5 4.8E+02 0.01 22.5 7.8 60 22-81 30-93 (418)
153 TIGR02449 conserved hypothetic 23.4 2.4E+02 0.0052 19.0 4.6 28 50-77 7-34 (65)
154 PF06698 DUF1192: Protein of u 23.4 1.3E+02 0.0029 19.9 3.3 22 35-56 34-55 (59)
155 TIGR02559 HrpB7 type III secre 23.3 3.1E+02 0.0067 21.6 5.8 38 28-65 7-44 (158)
156 PF00170 bZIP_1: bZIP transcri 23.0 2.1E+02 0.0044 18.0 6.3 43 32-81 22-64 (64)
157 PF12128 DUF3584: Protein of u 22.8 7.4E+02 0.016 24.4 10.5 16 31-46 687-702 (1201)
158 PF15556 Zwint: ZW10 interacto 22.5 4.3E+02 0.0093 22.3 6.8 32 30-61 149-180 (252)
159 PRK15396 murein lipoprotein; P 22.3 2.8E+02 0.006 19.3 6.8 42 35-76 31-72 (78)
160 PLN02678 seryl-tRNA synthetase 22.2 4.4E+02 0.0095 23.4 7.2 60 22-81 33-95 (448)
161 KOG0018|consensus 22.1 6E+02 0.013 25.9 8.6 66 12-81 829-894 (1141)
162 PF04912 Dynamitin: Dynamitin 21.6 1.6E+02 0.0036 24.8 4.3 48 35-82 93-143 (388)
163 PF04420 CHD5: CHD5-like prote 21.6 1.9E+02 0.0041 21.7 4.3 28 25-52 69-96 (161)
164 TIGR01010 BexC_CtrB_KpsE polys 21.4 4.6E+02 0.01 21.4 7.9 33 34-66 168-200 (362)
165 PRK11556 multidrug efflux syst 21.3 5.1E+02 0.011 21.9 8.0 26 6-31 127-152 (415)
166 PRK03918 chromosome segregatio 21.1 6.3E+02 0.014 23.0 10.0 31 32-62 196-226 (880)
167 PRK07075 isochorismate-pyruvat 20.8 2.3E+02 0.005 19.8 4.3 34 45-78 10-43 (101)
168 TIGR01803 CM-like chorismate m 20.8 2.6E+02 0.0057 18.5 6.0 38 45-82 1-38 (82)
169 TIGR01147 V_ATP_synt_G vacuola 20.8 1.8E+02 0.0039 21.4 3.9 21 13-33 37-57 (113)
170 TIGR00606 rad50 rad50. This fa 20.7 7.9E+02 0.017 24.3 9.1 50 14-63 404-453 (1311)
171 PF07716 bZIP_2: Basic region 20.6 2.2E+02 0.0048 17.5 4.4 14 64-77 39-52 (54)
172 COG1605 PheA Chorismate mutase 20.4 3.1E+02 0.0066 19.0 7.4 42 41-82 6-48 (101)
173 TIGR03545 conserved hypothetic 20.1 5.2E+02 0.011 23.6 7.3 46 30-75 213-258 (555)
No 1
>PRK11637 AmiB activator; Provisional
Probab=90.96 E-value=3.9 Score=34.49 Aligned_cols=73 Identities=14% Similarity=0.242 Sum_probs=41.0
Q ss_pred hhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 9 NNSERESLEQELSNAKLLIE---RLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 9 a~~eKdeaE~El~~~r~k~~---R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
.+.+.+++++++......+. ........+++.+..+|....+.+...++++.....+.-.+..+|..++.++.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544443 45555555666666666666666666655555555555555555555555543
No 2
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.83 E-value=12 Score=28.49 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 24 KLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 24 r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
+....++.+-++-||+.|..+|+.....+.+-..++...|.|.--|+-.+......+.
T Consensus 40 ~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~ 97 (140)
T PF10473_consen 40 KECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVS 97 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888999999999999999999999999999999999999999877776655543
No 3
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.72 E-value=16 Score=30.21 Aligned_cols=77 Identities=27% Similarity=0.311 Sum_probs=47.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHH
Q psy14454 5 LKNENNSERESLEQELSNAKLLIER-------LERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIE 77 (117)
Q Consensus 5 ~l~Qa~~eKdeaE~El~~~r~k~~R-------~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E 77 (117)
++......+++++.++..++....- .++..++++..+..+|...|+.|+..+..+.....+.=.+++++..+.
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~ 257 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELL 257 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778888888888776542 344555666666666666666666666666666655555555555555
Q ss_pred HHHh
Q psy14454 78 KELQ 81 (117)
Q Consensus 78 ~qLh 81 (117)
.++.
T Consensus 258 ~eI~ 261 (325)
T PF08317_consen 258 AEIA 261 (325)
T ss_pred HHHH
Confidence 4443
No 4
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.71 E-value=18 Score=28.68 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhhhCChhhhhhhhcCchhhHHHHHHHHHHHh
Q psy14454 34 QRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKELTSLIMDMDA 112 (117)
Q Consensus 34 ~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~~~s~e~~~~~lqa~~rekELt~~iqqMEa 112 (117)
...++..+..|+..+|-.+...+.++...+..+-.|-.+|..+++.+... ... .--.-...|.+|..+-.+|..
T Consensus 207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~-~~~----~~~~i~~le~el~~l~~~~~~ 280 (312)
T PF00038_consen 207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEE-REE----YQAEIAELEEELAELREEMAR 280 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHH-HHH----HHHhhhccchhHHHHHHHHHH
Confidence 45556777778888888888888888888888888888888888877762 111 111122345566655555543
No 5
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.80 E-value=22 Score=28.31 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHH
Q psy14454 15 SLEQELSNAKLLI 27 (117)
Q Consensus 15 eaE~El~~~r~k~ 27 (117)
.+|+++.+++.+.
T Consensus 97 ~le~el~~l~~~l 109 (206)
T PRK10884 97 DLENQVKTLTDKL 109 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 6
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.11 E-value=28 Score=27.67 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=36.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 6 KNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 6 l~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
+-..+.+.+++..++.+.+....-....-.+.+..+...++.++....+....+...+.|+-.|.-++..+++...+
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666655433222222333333444444444444444444444444554455555555554444
No 7
>PRK09039 hypothetical protein; Validated
Probab=79.49 E-value=24 Score=29.72 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 37 EAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 37 EveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.|.+|+.+|..+|.+|...+..+.-+....-..-.+|.+++..|+-
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666655555555566665555544
No 8
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=79.00 E-value=16 Score=30.24 Aligned_cols=54 Identities=22% Similarity=0.320 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 29 RLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 29 R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.+.+.+..|..+|..++..|..+|++|..=+..--.|..|-++.+..++.++-.
T Consensus 256 ~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~ 309 (344)
T PF12777_consen 256 KEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKN 309 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcc
Confidence 445566778999999999999999999998888888999988888888877643
No 9
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=78.12 E-value=7.4 Score=35.06 Aligned_cols=50 Identities=2% Similarity=0.138 Sum_probs=40.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14454 5 LKNENNSERESLEQELSNAKLLIE---RLERTQRQEAARSQAELGSYKQRLDR 54 (117)
Q Consensus 5 ~l~Qa~~eKdeaE~El~~~r~k~~---R~~e~~kQEveRL~~EL~~~rQrLE~ 54 (117)
-|.+.+.+-+++|++|..++...+ +......+.|+.|..|+..++.++++
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888999999999987666 77777788888888998888888853
No 10
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=77.84 E-value=11 Score=25.44 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 41 SQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 41 L~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
|.+++.+++-|||++...+....-++-.|+-.=.++.++|+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~ 44 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD 44 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555554
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=77.19 E-value=39 Score=30.54 Aligned_cols=8 Identities=25% Similarity=0.252 Sum_probs=2.8
Q ss_pred HHhhHHHH
Q psy14454 65 ENIRLTEQ 72 (117)
Q Consensus 65 E~lrLtEq 72 (117)
++-.+..+
T Consensus 755 ~~~~~~~~ 762 (1179)
T TIGR02168 755 ELTELEAE 762 (1179)
T ss_pred HHHHHHHH
Confidence 33333333
No 12
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=76.66 E-value=30 Score=32.66 Aligned_cols=69 Identities=20% Similarity=0.325 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 14 ESLEQELSNAKLLIERL---ERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 14 deaE~El~~~r~k~~R~---~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
+-.+.++.++.-++.+- .+.....+..|.++|...+......+..+..++.|-..++|.|+++-|.+-+
T Consensus 394 ~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~ 465 (717)
T PF09730_consen 394 DRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCM 465 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333 3344556788888888888888888999999999999999999999998877
No 13
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=75.73 E-value=9 Score=27.18 Aligned_cols=47 Identities=30% Similarity=0.443 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHhHh----------HHHHhhHHHHHHhHHHHHhh
Q psy14454 36 QEAARSQAELGSYKQRLDRADADLLHS----------RKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 36 QEveRL~~EL~~~rQrLE~~q~D~~~~----------r~E~lrLtEqla~~E~qLhl 82 (117)
.||.++...|..||.+||+++..+-.. -.|--.|.+.+.+-|++|+.
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~ 61 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKL 61 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 589999999999999999988655321 13444566666666666665
No 14
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=75.43 E-value=33 Score=33.85 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=49.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 8 ENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 8 Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
.+..+...++.++.....+...-.+.-...++-++.+|..++++|+.+.+.+..+.++...+.+.++.++.++
T Consensus 893 ~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 893 EAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666665555555555555557778888888888888888888777777777766666666665
No 15
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=75.19 E-value=52 Score=30.25 Aligned_cols=51 Identities=31% Similarity=0.324 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 32 RTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 32 e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
..+.|++.-|+.||++..-.=|+..+|+-++|-++-.|+=+++.+.-+|-.
T Consensus 300 qaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke 350 (546)
T PF07888_consen 300 QASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKE 350 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 457899999999999888888999999999999999999999987665533
No 16
>KOG0977|consensus
Probab=74.12 E-value=26 Score=32.13 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhh
Q psy14454 16 LEQELSNAKLLI---ERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMA 83 (117)
Q Consensus 16 aE~El~~~r~k~---~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~ 83 (117)
-|-|+.+++.-+ .|.-.....+|.+|..|+..+|.+++-+.+++...|.+.--.---|+++|-++++.
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~ 160 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTL 160 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHH
Confidence 455555555443 34455667788888888888888888887777777777666666677777776665
No 17
>PF13514 AAA_27: AAA domain
Probab=72.07 E-value=62 Score=30.92 Aligned_cols=109 Identities=21% Similarity=0.257 Sum_probs=64.0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHH--HHhhHHHHHHhHHHHH
Q psy14454 3 KLLKNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRK--ENIRLTEQIANIEKEL 80 (117)
Q Consensus 3 ~~~l~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~--E~lrLtEqla~~E~qL 80 (117)
+-.+|++..+.++++++|++...+...= ....++++.+..++..++..+........+..+ -..-+-..+..++.+|
T Consensus 149 ~~~in~~l~~l~e~~~~l~~~~~~~~~y-~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l 227 (1111)
T PF13514_consen 149 KPEINQALKELKELERELREAEVRAAEY-QELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAEL 227 (1111)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4568999999999999999987765432 223334444444444444444444333333221 2344555666677776
Q ss_pred h----hhhCChhhhhhhhcCchhhHHHHHHHHHHHh
Q psy14454 81 Q----MAKLSADDREDLLQDPKKDKELTSLIMDMDA 112 (117)
Q Consensus 81 h----l~~~s~e~~~~~lqa~~rekELt~~iqqMEa 112 (117)
. +..|+++..........+-..+...|...+.
T Consensus 228 ~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (1111)
T PF13514_consen 228 AELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQE 263 (1111)
T ss_pred HhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4467777776666665555555555554443
No 18
>PRK09039 hypothetical protein; Validated
Probab=71.48 E-value=61 Score=27.29 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=15.2
Q ss_pred HHHHhHHhhHHhHhHHHHhhHHHHHHhHHHH
Q psy14454 49 KQRLDRADADLLHSRKENIRLTEQIANIEKE 79 (117)
Q Consensus 49 rQrLE~~q~D~~~~r~E~lrLtEqla~~E~q 79 (117)
...|.....-...++....+|..||+.+..|
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555
No 19
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.60 E-value=19 Score=29.92 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHH
Q psy14454 3 KLLKNENNSERESLEQELSNAKLLI 27 (117)
Q Consensus 3 ~~~l~Qa~~eKdeaE~El~~~r~k~ 27 (117)
..|+.+-+.+-+.+++|...|..-.
T Consensus 8 ~~l~~~l~~~~~~~~~E~~~Y~~fL 32 (314)
T PF04111_consen 8 DLLLEQLDKQLEQAEKERDTYQEFL 32 (314)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665433
No 20
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.41 E-value=60 Score=26.34 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHH-HhhhhC
Q psy14454 24 KLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKE-LQMAKL 85 (117)
Q Consensus 24 r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~q-Lhl~~~ 85 (117)
|+.-.-.+++-.+-|+.|...|.+.+..-++.+..+.+-..|...|-++|-..-++ +.+..+
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~L 110 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPL 110 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 44555677888999999999999999999999999999999999999999999999 888654
No 21
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=69.28 E-value=55 Score=25.93 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=53.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhh---h
Q psy14454 8 ENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMA---K 84 (117)
Q Consensus 8 Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~---~ 84 (117)
+...+.+.+..++.+++.+.+.. ......+..+|.++|..++.+-.--.....++-.|-+.|.-+ +.+|-. .
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e----~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl-~~~heeEi~~ 146 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEE----LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL-KQNHEEEIEE 146 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH-Hhhhhhhhhh
Confidence 33444455555555555554443 555667777888888777777776666667777777776543 223322 1
Q ss_pred CChhh-hhhhhcC-chhhHHHHHHHHHHHhhhc
Q psy14454 85 LSADD-REDLLQD-PKKDKELTSLIMDMDAKHG 115 (117)
Q Consensus 85 ~s~e~-~~~~lqa-~~rekELt~~iqqMEaqH~ 115 (117)
+-... ...+.+. ..+.-+|+..|.+|-++++
T Consensus 147 L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye 179 (312)
T PF00038_consen 147 LREQIQSSVTVEVDQFRSSDLSAALREIRAQYE 179 (312)
T ss_dssp TSTT----------------HHHHHHHHHHHHH
T ss_pred hhhccccccceeecccccccchhhhhhHHHHHH
Confidence 21111 1111111 1335568888888877764
No 22
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=68.21 E-value=28 Score=27.23 Aligned_cols=96 Identities=23% Similarity=0.229 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhh----hCChhhhh
Q psy14454 16 LEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMA----KLSADDRE 91 (117)
Q Consensus 16 aE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~----~~s~e~~~ 91 (117)
+=.++..||-.+-++- =.-|..|..||...|.+.++..+.+.....||-+|+|=|..++.+.--- .+-.-.+.
T Consensus 10 af~~iK~YYndIT~~N---L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~ 86 (201)
T PF13851_consen 10 AFQEIKNYYNDITLNN---LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ 86 (201)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666655432 2346778888888888888888888888888888888888877765321 11111222
Q ss_pred hhhcCchhhHHHHHHHHHHHhhh
Q psy14454 92 DLLQDPKKDKELTSLIMDMDAKH 114 (117)
Q Consensus 92 ~~lqa~~rekELt~~iqqMEaqH 114 (117)
..-....+=+.++..|..++-.|
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~ 109 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEH 109 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233444445555555555444
No 23
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=67.42 E-value=49 Score=24.65 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 12 ERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 12 eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
+....|.+|.++..++. ....+|+++...|..++..++.+.......= .|+..|.-+|.+|-
T Consensus 29 ~~~~~E~EI~sL~~K~~----~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~l~rriq~LEeele 90 (143)
T PF12718_consen 29 ENEQKEQEITSLQKKNQ----QLEEELDKLEEQLKEAKEKLEESEKRKSNAE----QLNRRIQLLEEELE 90 (143)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----HHHhhHHHHHHHHH
Confidence 34445566666655543 3456777777777777777777766554322 45555555555553
No 24
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=66.76 E-value=49 Score=24.40 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHH
Q psy14454 35 RQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIE 77 (117)
Q Consensus 35 kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E 77 (117)
...|-++-.|+.++++++.+..+.-...+.|..+|+.....+.
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~ 64 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR 64 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777778877777777777777777777665553
No 25
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=63.55 E-value=45 Score=30.98 Aligned_cols=53 Identities=13% Similarity=0.328 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHH-HHhhh
Q psy14454 31 ERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEK-ELQMA 83 (117)
Q Consensus 31 ~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~-qLhl~ 83 (117)
-+...+||+||++||...++.++....+++.--.+.-+-.+.+.++.| ++-|.
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~ 134 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLE 134 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788888888888888888887777666666666677766654 34443
No 26
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=63.09 E-value=91 Score=26.21 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 34 QRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 34 ~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.++++.....+|...+++|.....++.-...+.-.+-++|+.+++.++-
T Consensus 216 ~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 216 LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555666666666666666666666666777777777776654
No 27
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=62.31 E-value=56 Score=26.74 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=22.9
Q ss_pred hhhhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14454 8 ENNSERESLEQELSNAKLLI-----ERLERTQRQEAARSQAELGSYKQRLDRA 55 (117)
Q Consensus 8 Qa~~eKdeaE~El~~~r~k~-----~R~~e~~kQEveRL~~EL~~~rQrLE~~ 55 (117)
.++.+-+++|..+.+++.++ +......-+-+..|..++...+.+|...
T Consensus 181 ~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 181 EAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555543 2223333344555555555555554433
No 28
>KOG0976|consensus
Probab=61.05 E-value=97 Score=30.92 Aligned_cols=69 Identities=29% Similarity=0.303 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHH----HHhhHHHHHHhHHHHHhh
Q psy14454 14 ESLEQELSNAKLLIE---RLERTQRQEAARSQAELGSYKQRLDRADADLLHSRK----ENIRLTEQIANIEKELQM 82 (117)
Q Consensus 14 deaE~El~~~r~k~~---R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~----E~lrLtEqla~~E~qLhl 82 (117)
++.|.-.+.+++++. +++-++.-=|--++-||...+|-.-+|+.|..+++. ||+.|+-|++.+.-.|--
T Consensus 266 k~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlE 341 (1265)
T KOG0976|consen 266 KEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLE 341 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554 444455555667899999999999999999999984 899999999988766644
No 29
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.00 E-value=54 Score=29.40 Aligned_cols=67 Identities=27% Similarity=0.353 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 12 ERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 12 eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
+..++|.++.++.-++.+... ...+..+..++..+...++....++..+..+.-.+.++|..+++++
T Consensus 399 ~~~~~e~el~~l~~~l~~~~~--~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 399 ELRELEEELAEVDKKISTIPS--EEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566555554443211 1244555555555555555555555555555555555555555544
No 30
>KOG0963|consensus
Probab=59.44 E-value=1.6e+02 Score=27.82 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhh
Q psy14454 35 RQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMA 83 (117)
Q Consensus 35 kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~ 83 (117)
++|+.-..+|++=.=.-|+.+++-+....+||=.|-+|++..=+..-+.
T Consensus 227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~ 275 (629)
T KOG0963|consen 227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLA 275 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 7889999999999999999999999999999999999999887777664
No 31
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=59.36 E-value=53 Score=25.78 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHH-------HhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 35 RQEAARSQAELGSYKQR-------LDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 35 kQEveRL~~EL~~~rQr-------LE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
..++..|...|..++.+ -+..++.+++...++=.+-+.+.+++.+.+
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443 667778888888888888888888887765
No 32
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=58.57 E-value=48 Score=21.47 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHh-----hHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 29 RLERTQRQEAARSQAELGSYKQRLDRAD-----ADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 29 R~~e~~kQEveRL~~EL~~~rQrLE~~q-----~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
+........+..|...+.++...+.... .++..++.-.-.|...|...+.++..
T Consensus 12 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~ 70 (123)
T PF02050_consen 12 QELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELER 70 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666 55666666666666666666665555
No 33
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=57.80 E-value=68 Score=23.04 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hHHhhHHhHhHHHHhhHHHHHHhHHHHHhhh
Q psy14454 33 TQRQEAARSQAELGSYKQRL-DRADADLLHSRKENIRLTEQIANIEKELQMA 83 (117)
Q Consensus 33 ~~kQEveRL~~EL~~~rQrL-E~~q~D~~~~r~E~lrLtEqla~~E~qLhl~ 83 (117)
.+.++..++..||-.+-..| +.|-.=++-+|++...+-.....++++|+-+
T Consensus 12 ~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 12 EAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666 8899999999999999999999999999874
No 34
>PRK11020 hypothetical protein; Provisional
Probab=57.40 E-value=69 Score=24.28 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhh-----HHhHhHHHHhhHHHHHHhHHHHHhhhhCChhhh
Q psy14454 34 QRQEAARSQAELGSYKQRLDRADA-----DLLHSRKENIRLTEQIANIEKELQMAKLSADDR 90 (117)
Q Consensus 34 ~kQEveRL~~EL~~~rQrLE~~q~-----D~~~~r~E~lrLtEqla~~E~qLhl~~~s~e~~ 90 (117)
-++|+.+|+.-|.-|+-.++.+.. -+++...|.-.|+-.|+++-++-.. .+|.+..
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~-~lske~~ 63 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQ-KLSKEAQ 63 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 378999999999999999988754 3567888999999999988777666 6676665
No 35
>KOG2264|consensus
Probab=56.78 E-value=82 Score=30.29 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 40 RSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 40 RL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.|++||..+++..|.-++-+-+.+-|..+|--.|..+|+++--
T Consensus 104 el~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 4678888888888888888888888888888888888877643
No 36
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=54.88 E-value=61 Score=21.57 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=35.4
Q ss_pred HHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 44 ELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 44 EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
||..+|..+|.-|..++.-=.+=+.++.++|.+-+..++
T Consensus 1 ~l~~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K~~~~~ 39 (74)
T TIGR01808 1 EIDTLREEIDRLDAEILALVKRRAEISQAIGKARMASGG 39 (74)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 578899999999999999999999999999999887766
No 37
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=54.57 E-value=1.5e+02 Score=28.28 Aligned_cols=51 Identities=22% Similarity=0.340 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 30 LERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 30 ~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
.++.+.++.+.|++++-.+|.+||+....+.....=+..+.+..+.+.-++
T Consensus 330 sl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei 380 (775)
T PF10174_consen 330 SLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEI 380 (775)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666555555555555555554444443
No 38
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=54.27 E-value=1e+02 Score=29.22 Aligned_cols=46 Identities=28% Similarity=0.310 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhH
Q psy14454 31 ERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANI 76 (117)
Q Consensus 31 ~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~ 76 (117)
-+....+..+|..||..||.|=-|--+|-+---.||++|=.|++.+
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~L 116 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVL 116 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3455677788999999999999999999999999999999999876
No 39
>PRK02224 chromosome segregation protein; Provisional
Probab=53.65 E-value=1.8e+02 Score=26.58 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHH
Q psy14454 36 QEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIE 77 (117)
Q Consensus 36 QEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E 77 (117)
++++.+..++.....++......+..+..++-.+...+..++
T Consensus 251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le 292 (880)
T PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELE 292 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444555555554444444
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=53.48 E-value=1.4e+02 Score=27.56 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=50.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHh
Q psy14454 8 ENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIAN 75 (117)
Q Consensus 8 Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~ 75 (117)
+-.+...++.-++++.+.+-.++-....+.++...-+|..+..++.++-.-+-..|.||-+|.-+|+.
T Consensus 336 ql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~k 403 (546)
T PF07888_consen 336 QLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGK 403 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666777777777777776667677777777778888888777788889999999988875
No 41
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=53.42 E-value=1.1e+02 Score=24.07 Aligned_cols=73 Identities=22% Similarity=0.338 Sum_probs=31.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 8 ENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 8 Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
....+++++.+.+..+..+.....+....=--.+...-++++.++-.......-++.++-.|-+.|..+...|
T Consensus 115 knL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 115 KNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444333322211223333334444444444444444444444444444443333
No 42
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.81 E-value=1.1e+02 Score=24.03 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHH
Q psy14454 31 ERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEK 78 (117)
Q Consensus 31 ~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~ 78 (117)
...-.+++..|..|+.+++-..++.+.-+..-+.+..+|..+|.+++.
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666666666666666666666666665553
No 43
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=52.56 E-value=14 Score=20.67 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy14454 37 EAARSQAELGSYKQRLD 53 (117)
Q Consensus 37 EveRL~~EL~~~rQrLE 53 (117)
|++||...|+.+..+|.
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 66677777776666664
No 44
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=52.28 E-value=68 Score=27.55 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=41.0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHh
Q psy14454 3 KLLKNENNSERESLEQELSNAK-----------------LLIERLERTQRQEAARSQAELGSYKQRLDRADADLL 60 (117)
Q Consensus 3 ~~~l~Qa~~eKdeaE~El~~~r-----------------~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~ 60 (117)
|++.+|-+.....+.+-.+++- ..+..-+..++....+|..|+.++||+|.-++-|.-
T Consensus 29 KlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~K 103 (319)
T PF09789_consen 29 KLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIK 103 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 3444555555556666555444 334455688899999999999999999999888853
No 45
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=51.06 E-value=1.6e+02 Score=26.73 Aligned_cols=69 Identities=22% Similarity=0.204 Sum_probs=44.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 9 NNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 9 a~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
...+-+.+.++-..++..++|-..+...--.|.+.-+.+.++++...+..+.. +-..+..+|..++++|
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~---~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKS---ERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 33444555666666666666655555555566777777777777766665544 4446778888888887
No 46
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=50.84 E-value=74 Score=21.34 Aligned_cols=64 Identities=25% Similarity=0.358 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 14 ESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 14 deaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
+.+|.++.+|+..+++..+. ++....++..+++-=|.+=.-+.-+..+|..|.+.+..+.++|.
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk----~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRK----NSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888887665443 33444555555555555555666677888888888888877754
No 47
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=50.46 E-value=1.7e+02 Score=25.35 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHh
Q psy14454 30 LERTQRQEAARSQAELGSYKQRLDRADADLLHS 62 (117)
Q Consensus 30 ~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~ 62 (117)
.++.-+|--+||..||.|||-||-.|=.|..++
T Consensus 78 kLe~EKq~kerLEtEiES~rsRLaaAi~d~dqs 110 (305)
T PF14915_consen 78 KLEKEKQNKERLETEIESYRSRLAAAIQDHDQS 110 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456678888999999999999999887765543
No 48
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=50.15 E-value=1e+02 Score=22.77 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=14.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy14454 5 LKNENNSERESLEQELSNAKLLIERLE 31 (117)
Q Consensus 5 ~l~Qa~~eKdeaE~El~~~r~k~~R~~ 31 (117)
+++.-++..--.|-|+..++..+.|-.
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~ 43 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLE 43 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555666666665555443
No 49
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=49.27 E-value=1.2e+02 Score=25.14 Aligned_cols=70 Identities=17% Similarity=0.117 Sum_probs=31.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhh
Q psy14454 6 KNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMA 83 (117)
Q Consensus 6 l~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~ 83 (117)
+.+|++.-+.++.++...+...+|.....+ .=...++.+|.++.++..+++..-...-.+..++..|..+
T Consensus 101 l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~--------~~~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t 170 (385)
T PRK09859 101 LNSAKGSLAKALSTASNARITFNRQASLLK--------TNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYA 170 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 445555556665555555555555544321 1112234444444444444333333334444555555444
No 50
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=49.11 E-value=32 Score=22.21 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHh
Q psy14454 35 RQEAARSQAELGSYKQRLDRADADLL 60 (117)
Q Consensus 35 kQEveRL~~EL~~~rQrLE~~q~D~~ 60 (117)
..|+.||+-+|..+...+++.++.++
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35677777777777777766666554
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=48.85 E-value=3e+02 Score=28.20 Aligned_cols=55 Identities=18% Similarity=0.316 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHH---HhhhhCChhh
Q psy14454 35 RQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKE---LQMAKLSADD 89 (117)
Q Consensus 35 kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~q---Lhl~~~s~e~ 89 (117)
..+++.+..++..++..+...+..+...+.+...+...++.++.- +.+..||.+.
T Consensus 382 eeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEe 439 (1486)
T PRK04863 382 EARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADN 439 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 345555566666666666666666666666666666666544443 3333455443
No 52
>PRK02224 chromosome segregation protein; Provisional
Probab=48.35 E-value=2.1e+02 Score=26.11 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 35 RQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 35 kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
....+.+..++..+...++....++..++.+.-.|...|+.++..+
T Consensus 645 ~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~ 690 (880)
T PRK02224 645 EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENEL 690 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666666666666666655544
No 53
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=47.63 E-value=1.9e+02 Score=25.71 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHhHhHH
Q psy14454 38 AARSQAELGSYKQRLDRADADLLHSRK 64 (117)
Q Consensus 38 veRL~~EL~~~rQrLE~~q~D~~~~r~ 64 (117)
|..|..||+.++..|+.+..+-..++.
T Consensus 339 v~~L~~eL~~~r~eLea~~~~e~~~k~ 365 (522)
T PF05701_consen 339 VSSLEAELNKTRSELEAAKAEEEKAKE 365 (522)
T ss_pred HhhHHHHHHHHHHHHHHHHhhhcchhh
Confidence 333444444444444444444443333
No 54
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=47.32 E-value=2.4e+02 Score=28.13 Aligned_cols=71 Identities=21% Similarity=0.201 Sum_probs=33.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHH
Q psy14454 8 ENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEK 78 (117)
Q Consensus 8 Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~ 78 (117)
.+..+.+.+..++..+...+.-..+.-.+++..+..+|..++..+..+.+.....+.+.-++.+.++.++.
T Consensus 900 ~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~ 970 (1353)
T TIGR02680 900 EARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADA 970 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554433344444444444444444444444444444444444444444443333
No 55
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=46.92 E-value=2.1e+02 Score=25.42 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 35 RQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 35 kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
+-|+..|..-+.+++--|+++..++...+..--...-.+++++-+|.-
T Consensus 301 k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~ 348 (522)
T PF05701_consen 301 KEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNK 348 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence 334444444444444444444444444444333334444444444443
No 56
>PRK07857 hypothetical protein; Provisional
Probab=46.37 E-value=1.1e+02 Score=22.33 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 43 AELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 43 ~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
..|..+|+.+|..|..++.-=.+=++++.+|+.+=++.++
T Consensus 28 ~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~g~ 67 (106)
T PRK07857 28 AEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMASGG 67 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3578899999999999999999999999999998887776
No 57
>PRK06285 chorismate mutase; Provisional
Probab=46.09 E-value=69 Score=22.05 Aligned_cols=41 Identities=27% Similarity=0.496 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 42 QAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 42 ~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
...|..+|..+|..|..++.-=.+=+.++.++|..-+..++
T Consensus 6 ~~~L~elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K~~~~~ 46 (96)
T PRK06285 6 EKRLNEIRKRIDEIDEQIIDLIAERTSLAKEIAELKKSLGM 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56788999999999999999999999999999999888776
No 58
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=45.69 E-value=88 Score=22.22 Aligned_cols=40 Identities=20% Similarity=0.398 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhH
Q psy14454 36 QEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANI 76 (117)
Q Consensus 36 QEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~ 76 (117)
+|...|.-||.-++.++|+- -.+.+.--||.+|.|++-.+
T Consensus 24 ~e~~~L~eEI~~Lr~qve~n-Pevtr~A~EN~rL~ee~rrl 63 (86)
T PF12711_consen 24 EENEALKEEIQLLREQVEHN-PEVTRFAMENIRLREELRRL 63 (86)
T ss_pred HHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665553 24566666666666666544
No 59
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=45.46 E-value=1.5e+02 Score=23.29 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=49.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHH
Q psy14454 12 ERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKE 79 (117)
Q Consensus 12 eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~q 79 (117)
-...+++++..++-.++.--..-|......+.+|.++.++-...=.....-...|..|-.+|..+.++
T Consensus 144 ~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 144 MLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888887777777777777777888888887777777777777777777777776666544
No 60
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=45.12 E-value=1.4e+02 Score=24.91 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy14454 39 ARSQAELGSYKQ 50 (117)
Q Consensus 39 eRL~~EL~~~rQ 50 (117)
++|..||..+.+
T Consensus 60 ~~l~~eL~~LE~ 71 (314)
T PF04111_consen 60 EELLQELEELEK 71 (314)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 61
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=45.08 E-value=1.2e+02 Score=22.00 Aligned_cols=56 Identities=20% Similarity=0.373 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 27 IERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 27 ~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
....+.....++.+|...+.-++-+++..+..+..+....-.|...+.+++..+.-
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666666666666666666666666666666666655544
No 62
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=44.87 E-value=2.1e+02 Score=24.80 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=48.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHH--------H
Q psy14454 6 KNENNSERESLEQELSNAKLLIERLERTQ---RQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQI--------A 74 (117)
Q Consensus 6 l~Qa~~eKdeaE~El~~~r~k~~R~~e~~---kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEql--------a 74 (117)
|+||+-.+-++|.-.-.-..+..+-+... ..-+.-|++|=-=+||+||-|+..+..--.=.+-+-.+. +
T Consensus 188 L~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~a 267 (305)
T PF14915_consen 188 LSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQA 267 (305)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56777777777776666666666655422 122344677777788888888887766555555555555 5
Q ss_pred hHHHHHhh
Q psy14454 75 NIEKELQM 82 (117)
Q Consensus 75 ~~E~qLhl 82 (117)
..+++.+|
T Consensus 268 e~ekq~ll 275 (305)
T PF14915_consen 268 ESEKQVLL 275 (305)
T ss_pred HHHHHHHH
Confidence 55555543
No 63
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=43.79 E-value=1.4e+02 Score=23.48 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=34.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhH
Q psy14454 7 NENNSERESLEQELSNAKLLIER---LERTQRQEAARSQAELGSYKQRLDRADADLLH 61 (117)
Q Consensus 7 ~Qa~~eKdeaE~El~~~r~k~~R---~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~ 61 (117)
++.+.+.|.++..+..+..++.. ....+.+|+.-|+--|..+...|++++..+..
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~ 61 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEE 61 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45666777888887777776433 34456666766666666666655555544333
No 64
>PF15294 Leu_zip: Leucine zipper
Probab=43.65 E-value=92 Score=26.37 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 34 QRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 34 ~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
-.-||.||+.|-..+|-||-..+.....+=+|.-.|..+|.+++...
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~ 176 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQ 176 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55799999999999999999999999999999999999999998833
No 65
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.64 E-value=2e+02 Score=24.23 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=15.0
Q ss_pred HHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHH
Q psy14454 44 ELGSYKQRLDRADADLLHSRKENIRLTEQIANIEK 78 (117)
Q Consensus 44 EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~ 78 (117)
||...|..|...+.++.-.+.+---+.+++..+.-
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~ 239 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELES 239 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443333
No 66
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=43.43 E-value=37 Score=23.52 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHH
Q psy14454 28 ERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKE 79 (117)
Q Consensus 28 ~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~q 79 (117)
+.-+..--.+++.|..|+..++.++...+..+.+.+...-.|...|..+++.
T Consensus 24 D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~ 75 (131)
T PF05103_consen 24 DDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQET 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhh
Confidence 3344444556666666666666666666666666666666666665555443
No 67
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=43.14 E-value=23 Score=27.76 Aligned_cols=45 Identities=31% Similarity=0.343 Sum_probs=17.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q psy14454 6 KNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADL 59 (117)
Q Consensus 6 l~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~ 59 (117)
+|||--+..=+|.|| -+-+.-+-++.||.-|+..+||-| .++..+
T Consensus 9 lN~AIERnalLE~EL--------dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 9 LNQAIERNALLESEL--------DEKENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHCH---------------------
T ss_pred HHHHHHHhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 677777777888888 233456678999999999999999 554443
No 68
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=42.85 E-value=1.4e+02 Score=22.25 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=37.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHhhHHhHhHHHHh
Q psy14454 6 KNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAEL-----GSYKQRLDRADADLLHSRKENI 67 (117)
Q Consensus 6 l~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL-----~~~rQrLE~~q~D~~~~r~E~l 67 (117)
..+|...+.+.++.+.+.+.....-...++.+.++...++ ....+.++.++.++..-+..++
T Consensus 65 ~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~ 131 (175)
T PRK14472 65 KDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRAL 131 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777777777766666666666666666665 3344555556555555555444
No 69
>KOG4643|consensus
Probab=42.23 E-value=3e+02 Score=27.90 Aligned_cols=74 Identities=18% Similarity=0.185 Sum_probs=55.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHh
Q psy14454 9 NNSERESLEQELSNAKLLIERL-------------ERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIAN 75 (117)
Q Consensus 9 a~~eKdeaE~El~~~r~k~~R~-------------~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~ 75 (117)
++-|++.+..++.+.....+|+ .++-.++.+.|..-|..|.-.|...+.++.+|-..--.|-||+-.
T Consensus 441 L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt 520 (1195)
T KOG4643|consen 441 LQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKT 520 (1195)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888877777776 455667788888888888888999999999988877777777665
Q ss_pred HHHHHhh
Q psy14454 76 IEKELQM 82 (117)
Q Consensus 76 ~E~qLhl 82 (117)
...++-+
T Consensus 521 ~~~qye~ 527 (1195)
T KOG4643|consen 521 CDIQYEL 527 (1195)
T ss_pred HHHHHHH
Confidence 5444444
No 70
>PRK12704 phosphodiesterase; Provisional
Probab=41.93 E-value=2.6e+02 Score=25.09 Aligned_cols=16 Identities=13% Similarity=0.192 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHH
Q psy14454 15 SLEQELSNAKLLIERL 30 (117)
Q Consensus 15 eaE~El~~~r~k~~R~ 30 (117)
+++.|+...+...+++
T Consensus 61 eaeeE~~~~R~Ele~e 76 (520)
T PRK12704 61 EAKEEIHKLRNEFEKE 76 (520)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=41.43 E-value=2.2e+02 Score=24.22 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=15.2
Q ss_pred HHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 45 LGSYKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 45 L~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
|.++..+....+.++.....+.-.+.+.|..++.+|
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l 388 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDEL 388 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 333333334444444444444444444444444443
No 72
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=41.22 E-value=2.3e+02 Score=24.32 Aligned_cols=79 Identities=14% Similarity=0.229 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhhhCChhh-hhhhhcCchhhHHHHHHH
Q psy14454 29 RLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMAKLSADD-REDLLQDPKKDKELTSLI 107 (117)
Q Consensus 29 R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~~~s~e~-~~~~lqa~~rekELt~~i 107 (117)
+++.-+.+.|..|+-||.. =--+..+-+.|..+|.-+|..+++-++--...+|. ....-.++..-..|+..+
T Consensus 206 ~QL~~An~qia~LseELa~-------k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL 278 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELAR-------KTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAEL 278 (306)
T ss_pred HHhhhcchhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443 33455566777778888888888877765554433 333444455666788888
Q ss_pred HHHHhhh
Q psy14454 108 MDMDAKH 114 (117)
Q Consensus 108 qqMEaqH 114 (117)
.++..++
T Consensus 279 ~elqdkY 285 (306)
T PF04849_consen 279 QELQDKY 285 (306)
T ss_pred HHHHHHH
Confidence 7777665
No 73
>KOG2391|consensus
Probab=41.18 E-value=1.5e+02 Score=26.23 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 31 ERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 31 ~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.+..+-|++++++|+++++++=|-.--+..+-+++--+|--++.++.++.-+
T Consensus 220 R~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDI 271 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDI 271 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4556678999999999999998888877777777777777777776666543
No 74
>PHA02562 46 endonuclease subunit; Provisional
Probab=41.03 E-value=2.3e+02 Score=24.18 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=35.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHH
Q psy14454 12 ERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKE 79 (117)
Q Consensus 12 eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~q 79 (117)
.+++++.++..+..+..-..+.. .+...+...+...++.+.....++.....+.-.|...|.+++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~-~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIM-DEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555444222222 23555555555555555555555555555555555555555544
No 75
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=40.81 E-value=1.2e+02 Score=21.06 Aligned_cols=58 Identities=24% Similarity=0.407 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhhhCChhhhhhhhcCchhhHHHHHHHHHH
Q psy14454 43 AELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKELTSLIMDM 110 (117)
Q Consensus 43 ~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~~~s~e~~~~~lqa~~rekELt~~iqqM 110 (117)
.+|..+|..+|..|..++.-=.+=++++.++|.+-...++.- -.+.||+++-..+.++
T Consensus 3 ~~L~~lR~~ID~ID~qLv~LL~~R~~~~~~ia~~K~~~~~~v----------~dp~Re~~vl~~~~~~ 60 (94)
T TIGR01795 3 AELKALRQSIDNIDAAVIHMLAERFKCTSQVGVLKANAGLAP----------ADPAREDYQIARLRRL 60 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------CCHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999998876665522 2334555555555444
No 76
>KOG2778|consensus
Probab=40.76 E-value=23 Score=30.82 Aligned_cols=52 Identities=29% Similarity=0.369 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhh
Q psy14454 17 EQELSNAKLLIERLER----TQRQEAARSQAELGSYKQRLDRADADLLHSRKENIR 68 (117)
Q Consensus 17 E~El~~~r~k~~R~~e----~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lr 68 (117)
.-++..|+.+.+.-.. +..-+.++.++||...+.+..-.+.+...|+.||.+
T Consensus 227 ~a~l~~~~~~~e~l~~~l~~~~~~~~~~~q~~ia~~~~~i~~e~~K~~~~k~en~r 282 (328)
T KOG2778|consen 227 TAELKELQRKREILLQQLQKQEATEADKEQSEIANLSSHIRPEDEKLKRYKKENIR 282 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccCcchhHhhhcchhhhh
Confidence 5567778878777777 556677889999999999999999999999999987
No 77
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=40.60 E-value=67 Score=21.28 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=34.5
Q ss_pred HHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhh
Q psy14454 45 LGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMA 83 (117)
Q Consensus 45 L~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~ 83 (117)
|..+|..+|..|..++.-=.+=+.++.++|..-...++.
T Consensus 1 L~~lR~~Id~iD~~i~~Ll~~R~~~~~~i~~~K~~~~~~ 39 (81)
T TIGR01805 1 LELIRKKIDEIDDKLVVLFEERMEVVKEIAAYKKKNGIP 39 (81)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 357899999999999999999999999999998888773
No 78
>KOG0933|consensus
Probab=40.22 E-value=2.4e+02 Score=28.50 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=41.1
Q ss_pred hhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHH
Q psy14454 12 ERESLEQELSNAKLLI---ERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIE 77 (117)
Q Consensus 12 eKdeaE~El~~~r~k~---~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E 77 (117)
+..+++++|..+..+. .+..+...+|+++|..|.-.+.+-+.-...-+..-...+=.|...+++++
T Consensus 788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLE 856 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777776654 36677777888887777666655555555555555555555555555443
No 79
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=40.14 E-value=1.8e+02 Score=22.81 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy14454 28 ERLERTQRQEAARSQAELGSYKQRLDRAD 56 (117)
Q Consensus 28 ~R~~e~~kQEveRL~~EL~~~rQrLE~~q 56 (117)
....+..+-||.||.++.+.+.+.++.+.
T Consensus 151 ~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 151 KEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566778888777777777766543
No 80
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=40.08 E-value=1.6e+02 Score=21.99 Aligned_cols=103 Identities=19% Similarity=0.189 Sum_probs=59.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 12 ERESLEQELSNAKLLIERLER----------TQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 12 eKdeaE~El~~~r~k~~R~~e----------~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
+.++=..|+..++.++...+- ....+...+..+|......+.....++..+..+.-++-..+..+..+..
T Consensus 57 kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 57 KIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345556677777776655433 2334556666677777777777777777777777777777777766666
Q ss_pred hhhCChhhhhhhhcCchhhHHHHHHHHHHHhhhc
Q psy14454 82 MAKLSADDREDLLQDPKKDKELTSLIMDMDAKHG 115 (117)
Q Consensus 82 l~~~s~e~~~~~lqa~~rekELt~~iqqMEaqH~ 115 (117)
+- ..|..=.+--.....-.+|...|..++.+|.
T Consensus 137 ~~-~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~ 169 (177)
T PF13870_consen 137 LL-GVPALLRDYDKTKEEVEELRKEIKELERKVE 169 (177)
T ss_pred CC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 52 2222211111222233456667777766664
No 81
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=40.07 E-value=2.8e+02 Score=24.94 Aligned_cols=72 Identities=19% Similarity=0.145 Sum_probs=45.5
Q ss_pred hhhhhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHH
Q psy14454 7 NENNSERESLEQELS-----NAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEK 78 (117)
Q Consensus 7 ~Qa~~eKdeaE~El~-----~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~ 78 (117)
.....+.|++++.|. +...+..........++.++..++.++.+.++....++...+++.-++.+......+
T Consensus 401 ~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 477 (650)
T TIGR03185 401 RELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINAFE 477 (650)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345566666766664 333445555666667777777777777777777777777777766666555544333
No 82
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.83 E-value=1.6e+02 Score=22.12 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHH
Q psy14454 34 QRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKE 79 (117)
Q Consensus 34 ~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~q 79 (117)
.+.+..++..|+..++..|+.++.|+ -.|-.|..+++++
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~-------~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEI-------EALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 44566777777777777777755554 4555666666554
No 83
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=39.27 E-value=1.3e+02 Score=24.48 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhH
Q psy14454 35 RQEAARSQAELGSYKQRLDRADADLLHSRKENIRL 69 (117)
Q Consensus 35 kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrL 69 (117)
...+.....++..+|+-.+.+.+.-+.+++|.-.|
T Consensus 45 E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L 79 (207)
T PF05546_consen 45 EDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL 79 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555554333
No 84
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=39.13 E-value=70 Score=21.32 Aligned_cols=38 Identities=21% Similarity=0.441 Sum_probs=34.1
Q ss_pred HHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 45 LGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 45 L~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
|..+|..+|..|..++.-=.+=+.++.++|..-...++
T Consensus 1 L~~lR~~ID~ID~~il~Ll~~R~~~~~~ia~~K~~~~~ 38 (83)
T TIGR01799 1 LEDLRGEIDGVDQELLHLLAKRLELVAQVGKVKHAAGL 38 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999999999999999999999888776
No 85
>PRK09239 chorismate mutase; Provisional
Probab=39.06 E-value=1.4e+02 Score=21.20 Aligned_cols=46 Identities=33% Similarity=0.504 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 37 EAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 37 EveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
|.-++...|..+|..+|..|..++.-=.+=++++.+||..-+..++
T Consensus 4 ~~~~~~~~L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K~~~~~ 49 (104)
T PRK09239 4 EQARAPAELAALRQSIDNIDAALIHMLAERFKCTQAVGVLKAEHGL 49 (104)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3456778899999999999999999999999999999998887766
No 86
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=38.59 E-value=1.1e+02 Score=25.06 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhH
Q psy14454 29 RLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANI 76 (117)
Q Consensus 29 R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~ 76 (117)
.+.....+|-.+|..|+..+++++.....+ .++||-+|-+.|+-.
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~---l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILTQN---LKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCc
Confidence 355566778888888888777766654333 678888887766543
No 87
>PRK14127 cell division protein GpsB; Provisional
Probab=38.38 E-value=1.6e+02 Score=21.59 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=10.8
Q ss_pred HHhhHHHHHHhHHHHH
Q psy14454 65 ENIRLTEQIANIEKEL 80 (117)
Q Consensus 65 E~lrLtEqla~~E~qL 80 (117)
=|.-+--.|+++|+..
T Consensus 86 tn~DiLKRls~LEk~V 101 (109)
T PRK14127 86 TNYDILKRLSNLEKHV 101 (109)
T ss_pred chHHHHHHHHHHHHHH
Confidence 4556667777777765
No 88
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=37.83 E-value=2.7e+02 Score=26.20 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=21.8
Q ss_pred HHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 48 YKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 48 ~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
||+|.-.-+.++-+-|+|.-..-|++..+|.++
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666655
No 89
>PRK03918 chromosome segregation protein; Provisional
Probab=37.75 E-value=3.1e+02 Score=24.85 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHH
Q psy14454 33 TQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQ 72 (117)
Q Consensus 33 ~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEq 72 (117)
....+.+.|..++..+..++.....++..+..+--.+.+.
T Consensus 235 ~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~ 274 (880)
T PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE 274 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443333333
No 90
>PRK07248 hypothetical protein; Provisional
Probab=37.74 E-value=1e+02 Score=20.61 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=35.2
Q ss_pred HHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhh
Q psy14454 45 LGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMA 83 (117)
Q Consensus 45 L~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~ 83 (117)
|..+|+.+|..|..++.-=.+=+.++.++|.+-...++.
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~~~~~ 41 (87)
T PRK07248 3 LEEIRQEIDQIDDQLVALLEKRMALVEQVVAYKKATGKP 41 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 678999999999999999999999999999998888763
No 91
>KOG2264|consensus
Probab=37.69 E-value=1.2e+02 Score=29.27 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=25.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q psy14454 6 KNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADA 57 (117)
Q Consensus 6 l~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~ 57 (117)
|-+-..+++++-.||.++++|++ .-|++|.+-+.||..++--++++|.
T Consensus 95 L~ele~krqel~seI~~~n~kiE----elk~~i~~~q~eL~~Lk~~ieqaq~ 142 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEINTKIE----ELKRLIPQKQLELSALKGEIEQAQR 142 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHhHHHHHHHHhHHHHHHH
Confidence 34556667777777777777653 2233444444444444444444443
No 92
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=37.42 E-value=2.2e+02 Score=23.07 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=16.9
Q ss_pred HHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 49 KQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 49 rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
++.+|.++.++..++.+.-..--++..++.+|..
T Consensus 121 ~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l~~ 154 (310)
T PRK10559 121 REEIDQANNVLQTVLHQLAKAQATRDLAKLDLER 154 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555665555555554433333444555555443
No 93
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=37.32 E-value=1.8e+02 Score=24.24 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=19.3
Q ss_pred HHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhh
Q psy14454 49 KQRLDRADADLLHSRKENIRLTEQIANIEKELQMA 83 (117)
Q Consensus 49 rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~ 83 (117)
++.+|.+++++..++...-..--++..++..|..+
T Consensus 140 ~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t 174 (397)
T PRK15030 140 KQEYDQALADAQQANAAVTAAKAAVETARINLAYT 174 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 45556665555555544444444556666666554
No 94
>KOG0977|consensus
Probab=36.60 E-value=3.1e+02 Score=25.44 Aligned_cols=95 Identities=17% Similarity=0.259 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---------------------HhHHhhHHhHhHHHHhhHH
Q psy14454 13 RESLEQELSNAKLLIERLERTQRQEAAR-SQAELGSYKQR---------------------LDRADADLLHSRKENIRLT 70 (117)
Q Consensus 13 KdeaE~El~~~r~k~~R~~e~~kQEveR-L~~EL~~~rQr---------------------LE~~q~D~~~~r~E~lrLt 70 (117)
++++-..|+++|..-+-.+.+.+.+++- ....|...+.. +..-.+.++-.-.-|..|+
T Consensus 244 ~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~ 323 (546)
T KOG0977|consen 244 KNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALE 323 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHH
Confidence 4566777888888888888888887652 34444444444 4444444444444444555
Q ss_pred HHHHhHHHHHhhhhCChhhhhhhhcCchhhHHHHHHHHHHHh
Q psy14454 71 EQIANIEKELQMAKLSADDREDLLQDPKKDKELTSLIMDMDA 112 (117)
Q Consensus 71 Eqla~~E~qLhl~~~s~e~~~~~lqa~~rekELt~~iqqMEa 112 (117)
.+|-.++.|| .++.+.+--.-..++.++..|=.+|..
T Consensus 324 ~~I~dL~~ql-----~e~~r~~e~~L~~kd~~i~~mReec~~ 360 (546)
T KOG0977|consen 324 KRIEDLEYQL-----DEDQRSFEQALNDKDAEIAKMREECQQ 360 (546)
T ss_pred HHHHHHHhhh-----hhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 5555554443 344554433334466666666665554
No 95
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.92 E-value=1.8e+02 Score=21.60 Aligned_cols=57 Identities=12% Similarity=0.212 Sum_probs=27.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHH
Q psy14454 9 NNSERESLEQELSNAKLLIER---LERTQRQEAARSQAELGSYKQRLDRADADLLHSRKE 65 (117)
Q Consensus 9 a~~eKdeaE~El~~~r~k~~R---~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E 65 (117)
..+++|.+-.-...+..++.- ......+||.-|+.-+..+...||.++..+..+..-
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455444444444333221 122345555555555555555555555555555443
No 96
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=35.25 E-value=1.6e+02 Score=20.86 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHH
Q psy14454 39 ARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKE 79 (117)
Q Consensus 39 eRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~q 79 (117)
+.|...+.++..++..++.+....+..+-.+.+.+..+-++
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777777777777777777766554
No 97
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.99 E-value=3.4e+02 Score=24.39 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=10.2
Q ss_pred HHHHhhHHHHHHhHHHH
Q psy14454 63 RKENIRLTEQIANIEKE 79 (117)
Q Consensus 63 r~E~lrLtEqla~~E~q 79 (117)
|+.--+|+++|+-+.+.
T Consensus 111 r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 111 REQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44455666777666663
No 98
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=34.78 E-value=1e+02 Score=21.80 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 43 AELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 43 ~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.+|..+|..+|..|..++.-=.+=+.++..||..-+..++
T Consensus 4 ~~L~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K~~~~~ 43 (102)
T TIGR01801 4 QSLEDLRAEVDQLNRQILALISRRGEVVAQIGHAKSAQGP 43 (102)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3588899999999999999999999999999998887776
No 99
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=34.52 E-value=2.8e+02 Score=23.25 Aligned_cols=61 Identities=23% Similarity=0.313 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHH-----------HHHHhHHHHHhh
Q psy14454 22 NAKLLIERLERTQRQEA----ARSQAELGSYKQRLDRADADLLHSRKENIRLT-----------EQIANIEKELQM 82 (117)
Q Consensus 22 ~~r~k~~R~~e~~kQEv----eRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLt-----------Eqla~~E~qLhl 82 (117)
.+..+....+..++-|. ++..+.++++.|+|+..++.+.-.++|.--|. =+|+++.+||.-
T Consensus 56 ~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~ 131 (258)
T PF15397_consen 56 ILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQ 131 (258)
T ss_pred HHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 33444444555555554 35667788888888888888888888765553 488888888765
No 100
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=34.37 E-value=90 Score=20.40 Aligned_cols=38 Identities=13% Similarity=0.278 Sum_probs=32.9
Q ss_pred HHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHH--Hhh
Q psy14454 45 LGSYKQRLDRADADLLHSRKENIRLTEQIANIEKE--LQM 82 (117)
Q Consensus 45 L~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~q--Lhl 82 (117)
|..+|..+|..|..++.-=.+=+.++.++|.+-.. .++
T Consensus 1 L~~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~~~~~~~ 40 (76)
T TIGR01807 1 LEELRNKIDAIDDRILDLLSERATYAQAVGELKGSGASGA 40 (76)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 35789999999999999999999999999988877 555
No 101
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=33.75 E-value=2.6e+02 Score=22.67 Aligned_cols=57 Identities=26% Similarity=0.286 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 24 KLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 24 r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
+.-++|..-......++|++.|.--+++=..+..--...|.|+-.|..+-..++.||
T Consensus 114 ka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL 170 (192)
T PF11180_consen 114 KAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQL 170 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888889999999988877777776666677777777766555554444
No 102
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=33.04 E-value=1.7e+02 Score=20.33 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=45.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhH
Q psy14454 12 ERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANI 76 (117)
Q Consensus 12 eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~ 76 (117)
..|.+|.-+.. |....+.-..-..+|.+|+..-+.+-|.||.+.+-...|..=|--++..|..+
T Consensus 16 aid~LE~~v~~-r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 16 AIDRLEKAVDR-RLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556655543 23344444667788999999999999999999988888877777776666544
No 103
>KOG0250|consensus
Probab=32.94 E-value=5.1e+02 Score=26.17 Aligned_cols=70 Identities=11% Similarity=0.250 Sum_probs=39.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhH
Q psy14454 8 ENNSERESLEQELSNAKLLIER-----------LERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANI 76 (117)
Q Consensus 8 Qa~~eKdeaE~El~~~r~k~~R-----------~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~ 76 (117)
+.+.+.|.+++.|.+++..+.. ..++-++||+.+...+++++.-++-...++.--+.|.-.+-..|..+
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l 448 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQL 448 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4456667777777777766621 23344566666666666666666666655554444443333333333
Q ss_pred H
Q psy14454 77 E 77 (117)
Q Consensus 77 E 77 (117)
.
T Consensus 449 ~ 449 (1074)
T KOG0250|consen 449 R 449 (1074)
T ss_pred H
Confidence 3
No 104
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=32.27 E-value=1.4e+02 Score=24.44 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHH
Q psy14454 35 RQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIE 77 (117)
Q Consensus 35 kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E 77 (117)
++-+..|-.|+....+.+...+.++...|+.|++|-|.|-=++
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555566666666666666666677788999999986554
No 105
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=32.13 E-value=5e+02 Score=25.48 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=36.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHh
Q psy14454 6 KNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLL 60 (117)
Q Consensus 6 l~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~ 60 (117)
+.+.-.....+++++..++....-......+++..+..+++.++..+.....+..
T Consensus 251 l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (1201)
T PF12128_consen 251 LQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIK 305 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777777777777777777777777766666665554433
No 106
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=31.60 E-value=2.8e+02 Score=22.43 Aligned_cols=19 Identities=0% Similarity=0.118 Sum_probs=9.9
Q ss_pred hhhhhhhhhhHHHHHHHHH
Q psy14454 6 KNENNSERESLEQELSNAK 24 (117)
Q Consensus 6 l~Qa~~eKdeaE~El~~~r 24 (117)
++++++..+.++..+..++
T Consensus 88 l~~a~a~l~~a~a~l~~~~ 106 (346)
T PRK10476 88 VAQAQADLALADAQIMTTQ 106 (346)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443
No 107
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=31.32 E-value=2.6e+02 Score=23.77 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=15.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH
Q psy14454 7 NENNSERESLEQELSNAKLLIE 28 (117)
Q Consensus 7 ~Qa~~eKdeaE~El~~~r~k~~ 28 (117)
.+++.+-+.+|.++.+++.++.
T Consensus 171 ~~~~~~L~~ae~~l~~f~~~~~ 192 (498)
T TIGR03007 171 KTYEKKLEAAENRLKAFKQENG 192 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 4566677788888888876653
No 108
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=31.28 E-value=1.7e+02 Score=19.86 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh---HHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 27 IERLERTQRQEAARSQAELGSYKQRLDRADA---DLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 27 ~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~---D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
++..-+...++++.|+++-+.+-..+-..-. |...-..++-.+.++|..+|.++.
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~ 91 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLK 91 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666555444433 455556666666666666666654
No 109
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=30.80 E-value=89 Score=21.21 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHH
Q psy14454 34 QRQEAARSQAELGSYKQRLDRADADL 59 (117)
Q Consensus 34 ~kQEveRL~~EL~~~rQrLE~~q~D~ 59 (117)
-+.++.-|+.|+..++..|..+.+++
T Consensus 48 LKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 48 LKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788888888888888888887765
No 110
>KOG4196|consensus
Probab=30.61 E-value=2e+02 Score=22.24 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhH
Q psy14454 13 RESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADAD 58 (117)
Q Consensus 13 KdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D 58 (117)
|+++|.+-..+ ..+.+.-++|++++.-|+.-|+...++.+.-
T Consensus 76 k~eLE~~k~~L----~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 76 KHELEKEKAEL----QQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555544333 3445556677777777777777777766544
No 111
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.28 E-value=86 Score=19.51 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14454 25 LLIERLERTQRQEAARSQAELGSY 48 (117)
Q Consensus 25 ~k~~R~~e~~kQEveRL~~EL~~~ 48 (117)
.+..|..+..+.+++++..|+..+
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555556555555543
No 112
>KOG0250|consensus
Probab=30.24 E-value=2.6e+02 Score=28.07 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhh
Q psy14454 27 IERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMA 83 (117)
Q Consensus 27 ~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~ 83 (117)
.+...+..+-|+.+|+.+|..|..++.++-.++.+-+..-=.|.+.+...++.+..+
T Consensus 659 ~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~ 715 (1074)
T KOG0250|consen 659 FDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKK 715 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677777777777777777777777777777777777777777766544
No 113
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=30.20 E-value=2.1e+02 Score=24.61 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 43 AELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 43 ~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.+|..+|+.+|..|.+++.-=.+=+.++.+||.+-+..++
T Consensus 5 ~~L~~lR~~ID~ID~~ii~Ll~~R~~~~~~I~~~K~~~~~ 44 (386)
T PRK10622 5 NPLLALREKISALDEKLLALLAERRELAVEVAKAKLLSHR 44 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4688999999999999999999999999999999988877
No 114
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=30.08 E-value=2.9e+02 Score=22.11 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHhHHhhHHhHhHHHHhhHHHHH
Q psy14454 13 RESLEQELSNAKLLIERLERTQRQEAARSQAEL--G----SYKQRLDRADADLLHSRKENIRLTEQI 73 (117)
Q Consensus 13 KdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL--~----~~rQrLE~~q~D~~~~r~E~lrLtEql 73 (117)
+++++.-+..++...++....+.+|.+++..+- . |+.+=.+.+.+++..|..+...+.+.+
T Consensus 87 ~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a~~eGy~eG~~~g~~e~~~e~~~~~~~l~~~~~~l 153 (281)
T PRK06669 87 TDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEGLEEVRELIEQLNKIIEKL 153 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666655555544321 2 344444455555666666655555544
No 115
>KOG1772|consensus
Probab=29.94 E-value=98 Score=23.11 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14454 22 NAKLLIERLERTQRQEAARSQAELGSYKQRLDR 54 (117)
Q Consensus 22 ~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~ 54 (117)
+.|..--|-+-++|.|.. .||-+||++.|.
T Consensus 24 ~ARk~K~~RLKQAKeEA~---~Eie~yr~qrE~ 53 (108)
T KOG1772|consen 24 EARKRKLRRLKQAKEEAE---KEIEEYRSQREK 53 (108)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 333333334444444443 355555555554
No 116
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=29.89 E-value=2.1e+02 Score=20.34 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 12 ERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 12 eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
+..++-.||..++.+.+++=+.++- -.|-.+++..+.+-+.=..+ .|-=-++..|+.++.++
T Consensus 25 e~~~L~eEI~~Lr~qve~nPevtr~-----A~EN~rL~ee~rrl~~f~~~--gerE~l~~eis~L~~~l 86 (86)
T PF12711_consen 25 ENEALKEEIQLLREQVEHNPEVTRF-----AMENIRLREELRRLQSFYVE--GEREMLLQEISELRDQL 86 (86)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHH-----HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhC
Confidence 4478899999999999999776654 33444444444444433322 22234677888887764
No 117
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.31 E-value=4.5e+02 Score=24.11 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=12.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHH
Q psy14454 7 NENNSERESLEQELSNAKLLI 27 (117)
Q Consensus 7 ~Qa~~eKdeaE~El~~~r~k~ 27 (117)
...+.+-+.+|..+.++|.++
T Consensus 277 ~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 277 PEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344555666677777776654
No 118
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=29.25 E-value=1.3e+02 Score=21.14 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHH
Q psy14454 28 ERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEK 78 (117)
Q Consensus 28 ~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~ 78 (117)
...+..++.||.||++=+.++|..|- -.-.-|-+|-.++.+++.
T Consensus 11 ~~kL~~K~eEI~rLn~lv~sLR~KLi-------KYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 11 KKKLNDKQEEIDRLNILVGSLRGKLI-------KYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 34456778899999999999987763 333445555555555555
No 119
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=28.95 E-value=2.5e+02 Score=21.11 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=7.4
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q psy14454 11 SERESLEQELSNAKLLIER 29 (117)
Q Consensus 11 ~eKdeaE~El~~~r~k~~R 29 (117)
++...++..+.......+|
T Consensus 23 a~l~~a~~~l~~a~~~~~r 41 (265)
T TIGR00999 23 AELKVAQKRVELARKTYER 41 (265)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333
No 120
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=28.83 E-value=2e+02 Score=20.47 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHhHhH-------HHHhhHHHHHHhH
Q psy14454 37 EAARSQAELGSYKQRLDRADADLLHSR-------KENIRLTEQIANI 76 (117)
Q Consensus 37 EveRL~~EL~~~rQrLE~~q~D~~~~r-------~E~lrLtEqla~~ 76 (117)
.++.|+++++++....+++..|+..+| .|+-|-.+.|-+.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 455555555555555555555554444 4666666666553
No 121
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=28.25 E-value=5.1e+02 Score=24.35 Aligned_cols=70 Identities=24% Similarity=0.331 Sum_probs=59.7
Q ss_pred hhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 13 RESLEQELS---NAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 13 KdeaE~El~---~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.+.++..+. ..............++...+.+.+..+.+.++.....+.-..++.-.+.+.+..++..+|-
T Consensus 370 ~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 370 LEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566665 5566667777888889999999999999999999999999999999999999999999988
No 122
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=28.22 E-value=1.8e+02 Score=19.23 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=10.4
Q ss_pred hHHhHhHHHHhhHHHHHHh
Q psy14454 57 ADLLHSRKENIRLTEQIAN 75 (117)
Q Consensus 57 ~D~~~~r~E~lrLtEqla~ 75 (117)
.|+.-++.|+.|-.+.|-+
T Consensus 31 ~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 31 ADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444455666666555544
No 123
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=28.17 E-value=2.2e+02 Score=20.10 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 37 EAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 37 EveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
++.++..+..+|+..|..+.++-.+.++.|-.|+-.+-.+..+..-
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~ 49 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKS 49 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4667777777777777777777777777777776666655554443
No 124
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=28.05 E-value=5.7e+02 Score=24.89 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 32 RTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 32 e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
.....++..+..+|..++...+..+..+.-+..+.-.+.+.+..+...++
T Consensus 866 ~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 915 (1163)
T COG1196 866 EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE 915 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555554444
No 125
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=28.00 E-value=2.6e+02 Score=24.63 Aligned_cols=71 Identities=20% Similarity=0.130 Sum_probs=37.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------HhHHhhHHhHhHHHHhhHHHHHHhHH
Q psy14454 7 NENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGS-YKQR------LDRADADLLHSRKENIRLTEQIANIE 77 (117)
Q Consensus 7 ~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~-~rQr------LE~~q~D~~~~r~E~lrLtEqla~~E 77 (117)
--++..-...+.|+.+|+.|.-|-+.-++.-|+-|...... .-.- |+....+..+.+.|+-.|..||..+.
T Consensus 224 ~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~ 301 (511)
T PF09787_consen 224 ELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLR 301 (511)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556677777777766666665555555555541111 1111 44445555555555555555553333
No 126
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.85 E-value=3e+02 Score=21.62 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHH
Q psy14454 37 EAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEK 78 (117)
Q Consensus 37 EveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~ 78 (117)
.++.+..|-..+.++++...+.+..-+..|-.+..++++.+.
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~ 84 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQ 84 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333334444444443333
No 127
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.66 E-value=3.5e+02 Score=22.31 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 43 AELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 43 ~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
.+|.++|+.|...+.++..-|++.-.|..++..++-.+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555444444444444443
No 128
>PRK14140 heat shock protein GrpE; Provisional
Probab=27.42 E-value=3.2e+02 Score=21.70 Aligned_cols=66 Identities=26% Similarity=0.415 Sum_probs=37.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHH--hhHHHHHHhHHHHHh
Q psy14454 5 LKNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKEN--IRLTEQIANIEKELQ 81 (117)
Q Consensus 5 ~l~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~--lrLtEqla~~E~qLh 81 (117)
+|++...+.++++.++.+++ --.-|+.+++.-+|.|..+.-.+....-.+. ..|-.-+-++++=+.
T Consensus 38 ~~~~l~~~i~~l~~ei~elk-----------d~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~ 105 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELE-----------ERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQ 105 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555554442 2335777888888888887776655444443 244555566666554
No 129
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=26.90 E-value=2.7e+02 Score=20.79 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14454 12 ERESLEQELSNAKLLIERLERTQRQEAARSQAELG 46 (117)
Q Consensus 12 eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~ 46 (117)
-|+++.+++..--..+++++.+-.-+..|+-.|+.
T Consensus 17 ~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 17 WKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788888888889999999999999888888864
No 130
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=26.40 E-value=6.1e+02 Score=24.69 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=7.5
Q ss_pred hHHHHhhHHHHHHhHHHHH
Q psy14454 62 SRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 62 ~r~E~lrLtEqla~~E~qL 80 (117)
++.+...+.+.|..++..+
T Consensus 756 ~~~~~~~~~~~l~~~~~~~ 774 (1163)
T COG1196 756 LQERLEELEEELESLEEAL 774 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443333
No 131
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=26.28 E-value=2e+02 Score=18.92 Aligned_cols=38 Identities=16% Similarity=0.406 Sum_probs=33.6
Q ss_pred HHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 45 LGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 45 L~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
|..+|..+|..|..++.-=.+=+.++.++|..-+..++
T Consensus 1 L~~lR~~Id~iD~~i~~Ll~~R~~l~~~i~~~K~~~g~ 38 (83)
T TIGR01791 1 IEELRQEIEEIDKSILDLIEKRIKIARKIGEIKHNNGL 38 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35789999999999999999999999999998887766
No 132
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.95 E-value=3.8e+02 Score=22.13 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q psy14454 30 LERTQRQEAARSQAELGSYKQRLDRADADL 59 (117)
Q Consensus 30 ~~e~~kQEveRL~~EL~~~rQrLE~~q~D~ 59 (117)
.++--+.+|.++.++|...+.|++.++-++
T Consensus 53 e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 53 ELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666666666665554
No 133
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=25.63 E-value=3.7e+02 Score=21.83 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHh
Q psy14454 16 LEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHS 62 (117)
Q Consensus 16 aE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~ 62 (117)
.-+.+.+=..|..|.++.....-.+|+.||..+|..+--.|+-+-.+
T Consensus 16 ~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a 62 (193)
T PF14662_consen 16 NNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA 62 (193)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778889999999999999999999999999988777665555
No 134
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.58 E-value=6e+02 Score=24.30 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 29 RLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 29 R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
|..+..+-|++.|.+++.+.+-+++ +-..-++|.--+-+.|..+++.|--
T Consensus 443 ~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 443 RELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666666555 2233344444466677777776644
No 135
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=25.42 E-value=78 Score=21.94 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=26.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 7 NENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 7 ~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.+.+.+..++.+++...+.+. ..+...+.++..+..++......|= ...+.=.+-..|..+=+..++
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~~~~~lP--------~~~~~~~ll~~l~~~A~~~gv 68 (144)
T PF04350_consen 2 KTLQAQIQQLQQELAQLKEKV-ANLEELKKQLEQLEQQLEELLKKLP--------AEEEIPSLLEDLNRLAKKSGV 68 (144)
T ss_dssp ----------HHHHHHTGGG--SSHHHHHHHHHHHHHHHHHHHHCTT--------GGGHHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhCC--------CchhHHHHHHHHHHHHHHCCC
Confidence 345566667777777665444 3344444455555555544444432 223333445555555444444
No 136
>KOG0161|consensus
Probab=25.33 E-value=8.7e+02 Score=26.10 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=56.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 5 LKNENNSERESLEQELSNAKLLIERLERTQ---RQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 5 ~l~Qa~~eKdeaE~El~~~r~k~~R~~e~~---kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
++..-..+++++|.++++.....+=..++. ..+...+..++..++-.++.....+..|..|.-.+..+|.+++.++.
T Consensus 895 ~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~ 974 (1930)
T KOG0161|consen 895 LLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEIN 974 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888888888887765544432 34455566778888888888888888888888888888888887776
Q ss_pred h
Q psy14454 82 M 82 (117)
Q Consensus 82 l 82 (117)
-
T Consensus 975 ~ 975 (1930)
T KOG0161|consen 975 S 975 (1930)
T ss_pred H
Confidence 5
No 137
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.06 E-value=3.2e+02 Score=20.95 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=7.4
Q ss_pred hhhhhhhhhHHHHHHH
Q psy14454 7 NENNSERESLEQELSN 22 (117)
Q Consensus 7 ~Qa~~eKdeaE~El~~ 22 (117)
.+++.+++.+...+.+
T Consensus 30 ~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 30 QQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 138
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=24.99 E-value=4.4e+02 Score=22.57 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HhhHHhHhHHHHhhHHHHHHhHHHHHhhhhCChhhhhhh
Q psy14454 27 IERLERTQRQEAARSQAELGSYKQRLDR----------ADADLLHSRKENIRLTEQIANIEKELQMAKLSADDREDL 93 (117)
Q Consensus 27 ~~R~~e~~kQEveRL~~EL~~~rQrLE~----------~q~D~~~~r~E~lrLtEqla~~E~qLhl~~~s~e~~~~~ 93 (117)
+.+++..-.-=|+||..||.+.+.-.+= .+--+-.-+...-.+++||.++|..+.+ +|-...++..
T Consensus 255 ~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~l-C~~tInrAR~ 330 (336)
T PF05055_consen 255 LIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYL-CFKTINRART 330 (336)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4688888899999999999999887653 2334556677788899999999999999 8877777654
No 139
>KOG0994|consensus
Probab=24.83 E-value=1.8e+02 Score=30.22 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=22.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14454 5 LKNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRL 52 (117)
Q Consensus 5 ~l~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrL 52 (117)
||-||+.+.|.+ +++..-+..++|.++.+.+|+..|..++.+..+++
T Consensus 1701 Ll~~a~~kl~~l-~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1701 LLGQANEKLDRL-KDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444433 23333344455555555555555555555554443
No 140
>KOG0995|consensus
Probab=24.82 E-value=5.2e+02 Score=24.33 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=35.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHH
Q psy14454 7 NENNSERESLEQELSNAKLLIERL------ERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTE 71 (117)
Q Consensus 7 ~Qa~~eKdeaE~El~~~r~k~~R~------~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtE 71 (117)
++-+.+-.+-|.|+-.++..+++- ...+--+|+|.+.|.+.+.+-|+..+.++..|+.+.-.+--
T Consensus 297 ~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 297 EMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334444444444544444444322 22334466666667677777777777777766666555443
No 141
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=24.65 E-value=3.3e+02 Score=21.05 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHh
Q psy14454 29 RLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIAN 75 (117)
Q Consensus 29 R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~ 75 (117)
+-.....+...+|+..|.++|..|+..+..+..++.+.=--...+..
T Consensus 8 ~~~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~ 54 (158)
T PF09486_consen 8 TLIQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRA 54 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455677889999999999999999998888777766555554443
No 142
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.60 E-value=3.3e+02 Score=20.90 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy14454 19 ELSNAKLLIER 29 (117)
Q Consensus 19 El~~~r~k~~R 29 (117)
+...++.+.+.
T Consensus 35 ~~~~l~~~i~~ 45 (302)
T PF10186_consen 35 ENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 143
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=24.46 E-value=2.4e+02 Score=19.34 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhhhCChhhhhhhhcCchhhHHHHHHHHHHHhhhcCC
Q psy14454 40 RSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKELTSLIMDMDAKHGRL 117 (117)
Q Consensus 40 RL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~~~s~e~~~~~lqa~~rekELt~~iqqMEaqH~k~ 117 (117)
+|+..|..+++.|+.... +. =.+--.|......++..|+. .-+.+. +...--.-+...+...|+.|+++
T Consensus 1 kL~~~L~~L~~eL~~~~~-ld--~~~~~~L~~l~~dIe~~L~~-~~~~~~-----~~~~l~d~l~~av~~FE~~HP~l 69 (85)
T PF14357_consen 1 KLQELLEKLHQELEQNPP-LD--EETRAELSSLDDDIEAQLAE-EDEAEA-----EDESLVDRLNEAVERFEASHPKL 69 (85)
T ss_pred CHHHHHHHHHHHHhcCCC-CC--HHHHHHHHHHHHHHHHHHhc-CCcccc-----cchhHHHHHHHHHHHHHHhCCcH
Confidence 366777788888876544 11 12223466777777888777 111111 11112334566777799999864
No 144
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=24.32 E-value=2.9e+02 Score=20.21 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=33.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHhhHHhHhHHHHh
Q psy14454 8 ENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELG-----SYKQRLDRADADLLHSRKENI 67 (117)
Q Consensus 8 Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~-----~~rQrLE~~q~D~~~~r~E~l 67 (117)
+|..-+.+.++.+.+.+.....-...++.+.++...++. ....-++.+.+++..-+..++
T Consensus 57 ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~ 121 (164)
T PRK14471 57 EMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAM 121 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666666655556666666666665552 244455555555555554443
No 145
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.31 E-value=4.1e+02 Score=21.94 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHh
Q psy14454 17 EQELSNAKLLIERLERTQ-----RQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIAN 75 (117)
Q Consensus 17 E~El~~~r~k~~R~~e~~-----kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~ 75 (117)
+.+|.+.+.+.+|....- .-|.+-|+.|+...+.|....--++++...+--.|+.++-.
T Consensus 65 e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~ 128 (239)
T COG1579 65 ESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIED 128 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444332 23455555555555555555555555444444444444333
No 146
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=24.03 E-value=6.5e+02 Score=24.19 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhh
Q psy14454 32 RTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMA 83 (117)
Q Consensus 32 e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~ 83 (117)
.....|.+++++||...+-.+|..+.++...+...=.|.+++..=++++-..
T Consensus 367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~ 418 (775)
T PF10174_consen 367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEE 418 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999998888888888877777653
No 147
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=24.00 E-value=2.7e+02 Score=22.60 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHH
Q psy14454 32 RTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQI 73 (117)
Q Consensus 32 e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEql 73 (117)
.-+--||+-=.+||+++|-.|-.+...+--....+..|.+.+
T Consensus 20 ke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~ 61 (202)
T PF06818_consen 20 KESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSL 61 (202)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344445555556666666666655555555555555554433
No 148
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=23.96 E-value=1.9e+02 Score=19.29 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=33.0
Q ss_pred HHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 46 GSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 46 ~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
..+|..+|..|..++.-=.+=+.++..+|..-+..++
T Consensus 2 ~~lR~~ID~ID~~lv~Ll~~R~~~~~~i~~~K~~~~~ 38 (83)
T TIGR01797 2 LALREKISAIDEKLLKLLAERRELAFEVGKSKLLSHR 38 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4688999999999999999999999999998888776
No 149
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=23.78 E-value=4e+02 Score=21.62 Aligned_cols=71 Identities=23% Similarity=0.326 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhh---------------hCChhhhhhhhcCchhhHHHH
Q psy14454 40 RSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMA---------------KLSADDREDLLQDPKKDKELT 104 (117)
Q Consensus 40 RL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~---------------~~s~e~~~~~lqa~~rekELt 104 (117)
||.-|-..+..-++.++---++--.|+..|--++-++++=++-. ++.++.+....|+.+=|+|-.
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q 98 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQ 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777776666666666766666666666655544 234444444555555565544
Q ss_pred HHHHHH
Q psy14454 105 SLIMDM 110 (117)
Q Consensus 105 ~~iqqM 110 (117)
+.+-.|
T Consensus 99 ~L~~~i 104 (193)
T PF14662_consen 99 SLVAEI 104 (193)
T ss_pred HHHHHH
Confidence 444443
No 150
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=23.66 E-value=3.6e+02 Score=21.13 Aligned_cols=63 Identities=22% Similarity=0.345 Sum_probs=36.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHhhHHhHhHHHHh
Q psy14454 5 LKNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAEL-----GSYKQRLDRADADLLHSRKENI 67 (117)
Q Consensus 5 ~l~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL-----~~~rQrLE~~q~D~~~~r~E~l 67 (117)
+..++...+.+.|+.|.+.|.+...-.+.++.+......++ .+....++.+++++..-|..++
T Consensus 99 ~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~ 166 (204)
T PRK09174 99 LKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAM 166 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666667777777666666555554443322222 1334466777777777777665
No 151
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.52 E-value=2e+02 Score=17.99 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHh
Q psy14454 34 QRQEAARSQAELGSYKQRLDRADADLL 60 (117)
Q Consensus 34 ~kQEveRL~~EL~~~rQrLE~~q~D~~ 60 (117)
.++++..|+.++..+++..+.-+..+.
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333
No 152
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=23.48 E-value=4.8e+02 Score=22.50 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh---hH-HhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 22 NAKLLIERLERTQRQEAARSQAELGSYKQRLDRAD---AD-LLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 22 ~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q---~D-~~~~r~E~lrLtEqla~~E~qLh 81 (117)
+-=...+...+....+++.|+.|.|.+-..+-... .+ ....+.+.-.|.++|..++.++.
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 93 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALK 93 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777788888887777766664311 12 33455566677777777777663
No 153
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=23.41 E-value=2.4e+02 Score=19.03 Aligned_cols=28 Identities=18% Similarity=0.076 Sum_probs=11.7
Q ss_pred HHHhHHhhHHhHhHHHHhhHHHHHHhHH
Q psy14454 50 QRLDRADADLLHSRKENIRLTEQIANIE 77 (117)
Q Consensus 50 QrLE~~q~D~~~~r~E~lrLtEqla~~E 77 (117)
+++|+-=.-..+-++||..|-++++.+.
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~ 34 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWR 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444443
No 154
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=23.41 E-value=1.3e+02 Score=19.88 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHh
Q psy14454 35 RQEAARSQAELGSYKQRLDRAD 56 (117)
Q Consensus 35 kQEveRL~~EL~~~rQrLE~~q 56 (117)
+.||.|+..+|..-+-....|+
T Consensus 34 ~aEI~R~~~~~~~K~a~r~AAe 55 (59)
T PF06698_consen 34 EAEIARLEAAIAKKSASRAAAE 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777766666655554
No 155
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=23.29 E-value=3.1e+02 Score=21.61 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHH
Q psy14454 28 ERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKE 65 (117)
Q Consensus 28 ~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E 65 (117)
.+-.....+.=.||+.+|+.+|-.|+.++..+..++.-
T Consensus 7 ~~l~~rr~r~~~rL~a~l~a~R~al~~a~a~la~~~~~ 44 (158)
T TIGR02559 7 RTLLERKTRRDARLRAELAERRAALQSADRELAEKVSQ 44 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777899999999999999999888766543
No 156
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.98 E-value=2.1e+02 Score=18.00 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 32 RTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 32 e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
..+++.+..|...+..+.. .....+.++-.|...+..+..++|
T Consensus 22 ~RKk~~~~~Le~~~~~L~~-------en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELES-------ENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445555555555544443 344455566666666666666655
No 157
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.82 E-value=7.4e+02 Score=24.36 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14454 31 ERTQRQEAARSQAELG 46 (117)
Q Consensus 31 ~e~~kQEveRL~~EL~ 46 (117)
......++..+..++.
T Consensus 687 l~~l~~~l~~~~~e~~ 702 (1201)
T PF12128_consen 687 LNELEEELKQLKQELE 702 (1201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 158
>PF15556 Zwint: ZW10 interactor
Probab=22.53 E-value=4.3e+02 Score=22.28 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhH
Q psy14454 30 LERTQRQEAARSQAELGSYKQRLDRADADLLH 61 (117)
Q Consensus 30 ~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~ 61 (117)
-...+.||+++|.-||..++|+-.+.+-.+-+
T Consensus 149 rq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR 180 (252)
T PF15556_consen 149 RQTGTQQELERLYQELGTLKQQAGQEQDKLQR 180 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666655554444433
No 159
>PRK15396 murein lipoprotein; Provisional
Probab=22.30 E-value=2.8e+02 Score=19.25 Aligned_cols=42 Identities=10% Similarity=0.258 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhH
Q psy14454 35 RQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANI 76 (117)
Q Consensus 35 kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~ 76 (117)
..+|..|++++....+-...+..|+-.+..|+-|-.+.|-+.
T Consensus 31 ssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 31 SSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666667888777777653
No 160
>PLN02678 seryl-tRNA synthetase
Probab=22.16 E-value=4.4e+02 Score=23.42 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 22 NAKLLIERLERTQRQEAARSQAELGSYKQRLDR---ADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 22 ~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~---~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
+-=...+...+...++++.|+++.+.+-..+-. ...+..--..+.-.|.++|..++.++-
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~ 95 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQ 95 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567777788888888888888877766643 122333334455566777777766653
No 161
>KOG0018|consensus
Probab=22.13 E-value=6e+02 Score=25.90 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=52.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 12 ERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 12 eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
..+.++++|.+. -+++. ..++.++....|+++.+--+.++-.++.+..++..++...|-..+-+-|
T Consensus 829 ~e~~~~k~i~e~---~~~e~-k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~ 894 (1141)
T KOG0018|consen 829 DEEAAEKIIAEI---EELEK-KNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERH 894 (1141)
T ss_pred HHHHHHHHHhhH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 345677777777 23333 4489999999999999999999999999999999999998887776655
No 162
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=21.63 E-value=1.6e+02 Score=24.76 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHH---hhHHHHHHhHHHHHhh
Q psy14454 35 RQEAARSQAELGSYKQRLDRADADLLHSRKEN---IRLTEQIANIEKELQM 82 (117)
Q Consensus 35 kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~---lrLtEqla~~E~qLhl 82 (117)
-|...||+-|+.+++.-++....+......+. -.|..++..++++|.-
T Consensus 93 ~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~ 143 (388)
T PF04912_consen 93 EQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDS 143 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHH
Confidence 45667777777777777777654433332222 3456777777776543
No 163
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=21.61 E-value=1.9e+02 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14454 25 LLIERLERTQRQEAARSQAELGSYKQRL 52 (117)
Q Consensus 25 ~k~~R~~e~~kQEveRL~~EL~~~rQrL 52 (117)
+|+.|.......|++.++.++++.+...
T Consensus 69 aKl~Rk~~kl~~el~~~~~~~~~~~~~~ 96 (161)
T PF04420_consen 69 AKLNRKLDKLEEELEKLNKSLSSEKSSF 96 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544444433
No 164
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=21.36 E-value=4.6e+02 Score=21.44 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHH
Q psy14454 34 QRQEAARSQAELGSYKQRLDRADADLLHSRKEN 66 (117)
Q Consensus 34 ~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~ 66 (117)
+.+-..-+..++..++++|+.++..+...|.++
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566677888999999999999999999988865
No 165
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=21.27 E-value=5.1e+02 Score=21.94 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=11.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy14454 6 KNENNSERESLEQELSNAKLLIERLE 31 (117)
Q Consensus 6 l~Qa~~eKdeaE~El~~~r~k~~R~~ 31 (117)
+.||++....++-++...+....|..
T Consensus 127 l~qaqa~l~~a~a~l~~A~~~~~R~~ 152 (415)
T PRK11556 127 LAQAQGQLAKDQATLANARRDLARYQ 152 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 166
>PRK03918 chromosome segregation protein; Provisional
Probab=21.14 E-value=6.3e+02 Score=22.95 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHhHh
Q psy14454 32 RTQRQEAARSQAELGSYKQRLDRADADLLHS 62 (117)
Q Consensus 32 e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~ 62 (117)
...+.+++.+..+|..+++.++.....+...
T Consensus 196 ~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~ 226 (880)
T PRK03918 196 KEKEKELEEVLREINEISSELPELREELEKL 226 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555444444333
No 167
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=20.84 E-value=2.3e+02 Score=19.83 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=29.7
Q ss_pred HHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHH
Q psy14454 45 LGSYKQRLDRADADLLHSRKENIRLTEQIANIEK 78 (117)
Q Consensus 45 L~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~ 78 (117)
|..+|..+|.-|..++.-=.+=++++.++|.+-+
T Consensus 10 L~~lR~~ID~ID~~iv~LL~eR~~~~~~ia~~K~ 43 (101)
T PRK07075 10 LDDIREAIDRLDRDIIAALGRRMQYVKAASRFKP 43 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6788999999999999988888999999987654
No 168
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=20.83 E-value=2.6e+02 Score=18.46 Aligned_cols=38 Identities=13% Similarity=0.339 Sum_probs=33.3
Q ss_pred HHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 45 LGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 45 L~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
|..+|..+|.-|..++.-=.+=+.++.++|..-+..++
T Consensus 1 L~~lR~~ID~ID~~lv~Ll~~R~~~~~~ia~~K~~~~~ 38 (82)
T TIGR01803 1 LADIREAIDRIDLALVQALGRRMDYVKRASEFKRSHEA 38 (82)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 35789999999999999999999999999988877666
No 169
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=20.81 E-value=1.8e+02 Score=21.38 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q psy14454 13 RESLEQELSNAKLLIERLERT 33 (117)
Q Consensus 13 KdeaE~El~~~r~k~~R~~e~ 33 (117)
|++|++||..||..-+.+...
T Consensus 37 K~EA~~EI~~yr~~kE~ef~~ 57 (113)
T TIGR01147 37 KEEAQKEVEKYKQQREKEFKE 57 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777665555443
No 170
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.70 E-value=7.9e+02 Score=24.27 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhH
Q psy14454 14 ESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSR 63 (117)
Q Consensus 14 deaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r 63 (117)
....+++..++..+..........+..++..+.+..|.+.....+.....
T Consensus 404 ~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~ 453 (1311)
T TIGR00606 404 EDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQ 453 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444433333
No 171
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.63 E-value=2.2e+02 Score=17.47 Aligned_cols=14 Identities=43% Similarity=0.669 Sum_probs=5.9
Q ss_pred HHHhhHHHHHHhHH
Q psy14454 64 KENIRLTEQIANIE 77 (117)
Q Consensus 64 ~E~lrLtEqla~~E 77 (117)
.+|-.|-.+|+.++
T Consensus 39 ~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 39 EENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444443
No 172
>COG1605 PheA Chorismate mutase [Amino acid transport and metabolism]
Probab=20.38 E-value=3.1e+02 Score=19.02 Aligned_cols=42 Identities=19% Similarity=0.365 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh-h
Q psy14454 41 SQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ-M 82 (117)
Q Consensus 41 L~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh-l 82 (117)
+..+|..+|+.+|..|.++++.=.|=+.++.++|.+=.+.+ +
T Consensus 6 ~~~~L~~lR~~Id~iD~~ll~Ll~eR~~l~~~Va~~K~~~g~~ 48 (101)
T COG1605 6 MMEELEELREEIDEIDRELLDLLAERLELAKEVGEAKAASGKL 48 (101)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34578899999999999999999999999999999998888 5
No 173
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.10 E-value=5.2e+02 Score=23.60 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHh
Q psy14454 30 LERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIAN 75 (117)
Q Consensus 30 ~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~ 75 (117)
+..+.++|+.+|.+|+..-++.......++...+.-.......|.+
T Consensus 213 ~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 213 ELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 5667788888888888887877777777777777665555555443
Done!