Query psy14454
Match_columns 117
No_of_seqs 25 out of 27
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 20:16:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o0z_A RHO-associated protein 92.6 1.8 6.2E-05 33.0 10.6 76 6-81 57-135 (168)
2 2no2_A HIP-I, huntingtin-inter 92.3 2 7E-05 30.0 10.7 72 10-81 28-99 (107)
3 3hnw_A Uncharacterized protein 89.1 4.7 0.00016 29.1 9.6 54 28-81 81-134 (138)
4 3hnw_A Uncharacterized protein 85.1 8.7 0.0003 27.7 9.3 60 22-81 68-127 (138)
5 2v71_A Nuclear distribution pr 80.2 18 0.00061 27.8 11.1 77 5-81 18-98 (189)
6 3i00_A HIP-I, huntingtin-inter 77.6 8.5 0.00029 27.4 6.7 19 62-80 38-56 (120)
7 1go4_E MAD1 (mitotic arrest de 76.9 10 0.00035 26.6 6.8 45 9-53 24-92 (100)
8 3iv1_A Tumor susceptibility ge 74.9 16 0.00054 24.7 7.1 50 5-54 19-71 (78)
9 4emc_A Monopolin complex subun 74.6 15 0.00052 28.5 7.9 53 20-72 4-56 (190)
10 3vkg_A Dynein heavy chain, cyt 72.4 27 0.00091 36.5 10.9 53 29-81 2049-2101(3245)
11 2dfs_A Myosin-5A; myosin-V, in 68.7 12 0.00041 34.7 7.0 16 38-53 986-1001(1080)
12 3u1c_A Tropomyosin alpha-1 cha 66.2 27 0.00094 23.6 9.6 29 34-62 42-70 (101)
13 1gk6_A Vimentin; intermediate 59.5 28 0.00097 21.5 6.7 50 6-55 2-54 (59)
14 2d8d_A Aroag, phospho-2-dehydr 58.0 25 0.00087 22.6 5.3 39 44-82 4-42 (90)
15 1gk4_A Vimentin; intermediate 57.3 37 0.0013 22.1 7.0 44 10-53 7-50 (84)
16 3oja_B Anopheles plasmodium-re 56.4 79 0.0027 25.6 10.0 43 39-81 540-582 (597)
17 2f1m_A Acriflavine resistance 56.2 43 0.0015 24.5 6.9 23 7-29 63-85 (277)
18 2eqb_B RAB guanine nucleotide 56.0 12 0.00041 26.2 3.6 29 42-70 4-32 (97)
19 3oja_A Leucine-rich immune mol 55.8 77 0.0026 25.3 10.6 69 8-76 414-482 (487)
20 1joc_A EEA1, early endosomal a 55.8 43 0.0015 23.2 6.5 27 34-60 16-42 (125)
21 1i84_S Smooth muscle myosin he 54.9 80 0.0027 29.0 9.7 18 12-29 858-875 (1184)
22 2wt7_B Transcription factor MA 54.3 38 0.0013 23.2 5.9 39 12-54 49-87 (90)
23 2lf0_A Uncharacterized protein 54.3 51 0.0018 24.1 6.9 58 33-91 7-69 (123)
24 3oja_B Anopheles plasmodium-re 53.3 89 0.003 25.3 10.4 20 9-28 468-487 (597)
25 2v4h_A NF-kappa-B essential mo 52.2 62 0.0021 23.1 8.9 34 48-81 74-107 (110)
26 1ybz_A Chorismate mutase; cons 51.5 34 0.0012 22.7 5.3 39 44-82 18-56 (91)
27 2dfs_A Myosin-5A; myosin-V, in 51.2 1.2E+02 0.004 28.2 10.3 18 60-77 1026-1043(1080)
28 3qh9_A Liprin-beta-2; coiled-c 51.2 51 0.0018 22.5 6.1 24 43-66 54-77 (81)
29 2eqb_B RAB guanine nucleotide 50.2 62 0.0021 22.5 10.0 31 52-82 64-94 (97)
30 2vkl_A RV0948C/MT0975; helical 49.7 36 0.0012 22.5 5.1 39 44-82 13-51 (90)
31 2jee_A YIIU; FTSZ, septum, coi 49.1 59 0.002 22.0 7.4 18 1-18 3-20 (81)
32 2v71_A Nuclear distribution pr 48.0 90 0.0031 23.8 12.1 81 27-113 54-138 (189)
33 3rmi_A Chorismate mutase prote 47.8 64 0.0022 22.1 7.3 40 43-82 12-51 (114)
34 3u59_A Tropomyosin beta chain; 47.1 61 0.0021 21.6 9.1 25 35-59 36-60 (101)
35 1uix_A RHO-associated kinase; 46.8 61 0.0021 21.5 6.5 45 38-82 6-50 (71)
36 3tnu_A Keratin, type I cytoske 46.1 53 0.0018 22.8 5.7 45 38-82 33-77 (131)
37 2v66_B Nuclear distribution pr 45.1 79 0.0027 22.3 7.5 39 13-51 12-50 (111)
38 3trt_A Vimentin; cytoskeleton, 43.3 58 0.002 20.3 9.3 64 17-80 8-72 (77)
39 3tnu_B Keratin, type II cytosk 41.9 83 0.0028 21.6 6.8 41 42-82 35-75 (129)
40 4dk0_A Putative MACA; alpha-ha 41.4 99 0.0034 23.4 7.0 13 8-20 74-86 (369)
41 1ecm_A Endo-oxabicyclic transi 40.9 76 0.0026 21.0 7.1 39 44-82 6-44 (109)
42 2ocy_A RAB guanine nucleotide 40.6 1.1E+02 0.0038 22.7 9.4 52 25-82 75-126 (154)
43 3m9b_A Proteasome-associated A 40.5 34 0.0012 27.4 4.5 39 38-76 56-94 (251)
44 3na7_A HP0958; flagellar bioge 39.4 1.2E+02 0.0041 22.8 8.9 49 11-59 32-83 (256)
45 3s9g_A Protein hexim1; cyclin 38.2 1.1E+02 0.0036 21.8 7.9 56 11-70 30-85 (104)
46 3htk_A Structural maintenance 37.3 65 0.0022 19.1 7.8 49 25-73 8-56 (60)
47 2lw1_A ABC transporter ATP-bin 37.2 84 0.0029 20.3 6.9 54 26-81 19-73 (89)
48 3mov_A Lamin-B1; LMNB1, B-type 35.7 1E+02 0.0034 20.8 9.0 49 6-54 14-62 (95)
49 1fmh_A General control protein 35.4 64 0.0022 18.5 4.0 25 56-80 7-31 (33)
50 2gtv_X CM, chorismate mutase; 34.8 1.1E+02 0.0037 20.9 6.7 39 44-82 4-50 (104)
51 3na7_A HP0958; flagellar bioge 34.7 1.5E+02 0.005 22.4 10.8 68 11-82 18-85 (256)
52 4gkw_A Spindle assembly abnorm 34.5 41 0.0014 25.5 3.8 27 36-62 60-86 (167)
53 3a7p_A Autophagy protein 16; c 34.1 1.5E+02 0.005 22.2 9.2 36 36-71 96-131 (152)
54 4emc_A Monopolin complex subun 33.9 1.6E+02 0.0056 22.7 8.4 43 30-73 35-77 (190)
55 3i00_A HIP-I, huntingtin-inter 31.8 1.3E+02 0.0046 21.1 8.6 58 19-76 23-80 (120)
56 4efa_G V-type proton ATPase su 31.4 1.2E+02 0.0042 21.2 5.8 22 13-34 41-62 (119)
57 4dci_A Uncharacterized protein 31.3 1.6E+02 0.0053 21.7 8.4 36 12-47 26-61 (150)
58 1x8y_A Lamin A/C; structural p 30.9 1.1E+02 0.0038 19.9 6.1 36 13-48 12-47 (86)
59 3u1c_A Tropomyosin alpha-1 cha 30.6 1.2E+02 0.0042 20.3 12.5 31 32-62 33-63 (101)
60 3oja_A Leucine-rich immune mol 30.6 2E+02 0.007 22.8 8.7 37 44-80 429-465 (487)
61 2wuj_A Septum site-determining 30.5 46 0.0016 20.4 3.0 29 51-79 28-56 (57)
62 3sjb_C Golgi to ER traffic pro 30.0 80 0.0027 21.8 4.4 31 25-55 52-82 (93)
63 3lnn_A Membrane fusion protein 29.1 94 0.0032 23.5 5.1 23 8-30 95-117 (359)
64 2yy0_A C-MYC-binding protein; 28.8 1E+02 0.0035 18.8 4.4 15 38-52 35-49 (53)
65 1x79_B RAB GTPase binding effe 28.2 1.6E+02 0.0054 20.8 7.5 42 27-68 36-77 (112)
66 1gmj_A ATPase inhibitor; coile 26.8 1.5E+02 0.0052 20.1 6.5 37 19-55 41-77 (84)
67 1ic2_A Tropomyosin alpha chain 26.7 1.3E+02 0.0044 19.2 8.9 52 8-63 10-61 (81)
68 3fpp_A Macrolide-specific effl 26.3 2E+02 0.007 21.4 6.9 32 49-80 113-144 (341)
69 3ret_A Salicylate biosynthesis 26.1 1.4E+02 0.0048 19.5 5.4 55 44-109 9-63 (101)
70 3cvf_A Homer-3, homer protein 25.7 1.5E+02 0.0052 19.7 7.0 40 41-80 25-64 (79)
71 1dkg_A Nucleotide exchange fac 23.3 2.3E+02 0.008 21.1 7.0 65 17-81 41-107 (197)
72 1ses_A Seryl-tRNA synthetase; 23.1 2.4E+02 0.008 23.1 6.8 56 25-80 31-87 (421)
73 2kes_A Synphilin-1; synphillin 22.8 59 0.002 20.2 2.4 19 64-82 4-22 (48)
74 3q0x_A Centriole protein; cent 21.1 3E+02 0.01 21.4 7.8 35 30-64 179-213 (228)
75 3vp9_A General transcriptional 21.1 1.2E+02 0.0042 20.8 4.0 43 5-50 15-57 (92)
76 3m9b_A Proteasome-associated A 20.7 97 0.0033 24.7 3.9 17 64-80 68-84 (251)
77 3sja_C Golgi to ER traffic pro 20.6 1.3E+02 0.0044 19.6 3.8 23 25-47 35-57 (65)
78 3u06_A Protein claret segregat 20.0 1.9E+02 0.0064 23.8 5.6 37 12-52 4-40 (412)
No 1
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.56 E-value=1.8 Score=32.97 Aligned_cols=76 Identities=12% Similarity=0.164 Sum_probs=59.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 6 KNENNSERESLEQELSNAKLLIERLE---RTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 6 l~Qa~~eKdeaE~El~~~r~k~~R~~---e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
..+....|+++++++..+.+.++=+- .+.-+-+.-|+.-|.++..-|++.-......-.++-.|.|.|+.+||+-.
T Consensus 57 ~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 57 NRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999988765333 33444456677888888888888888889999999999999999999644
No 2
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=92.30 E-value=2 Score=30.00 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=59.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 10 NSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 10 ~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
-..|.+++..+..+.....+..+..-..++.|+-||..-..-|...+.++.....+...|+..++.++.+.-
T Consensus 28 e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~ 99 (107)
T 2no2_A 28 EREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERD 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777777777777888889999999999999999999999999999999999999877653
No 3
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.14 E-value=4.7 Score=29.14 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 28 ERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 28 ~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
....+..+.|+..|.-||.+.+=.++.+.+.+...++++-.|-++++.+|..+.
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444577888888888888888888888888888888888888888887664
No 4
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.13 E-value=8.7 Score=27.68 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 22 NAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 22 ~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
+=..+..+..+.-.++++.+..||.+++-.|-.++-.+-.+..++-.|-+.+..+++++.
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566667777788888899999999999999999999999999999999998888875
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=80.21 E-value=18 Score=27.75 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=44.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHH----HHhHHHHH
Q psy14454 5 LKNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQ----IANIEKEL 80 (117)
Q Consensus 5 ~l~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEq----la~~E~qL 80 (117)
+..+.+.+.+.++.|+.++..-..=-...-..+++.+..-+..++.++.+...++-.||.+.-...-+ ++.+++++
T Consensus 18 ~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el 97 (189)
T 2v71_A 18 LSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDL 97 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777776544333333445556666666666666666666666666655555433 56666654
Q ss_pred h
Q psy14454 81 Q 81 (117)
Q Consensus 81 h 81 (117)
.
T Consensus 98 ~ 98 (189)
T 2v71_A 98 S 98 (189)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=77.58 E-value=8.5 Score=27.43 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=7.9
Q ss_pred hHHHHhhHHHHHHhHHHHH
Q psy14454 62 SRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 62 ~r~E~lrLtEqla~~E~qL 80 (117)
+++-+..|-.+|..+|-+|
T Consensus 38 ~q~~v~ql~~~i~~Le~eL 56 (120)
T 3i00_A 38 SQRVVLQLKGHVSELEADL 56 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 7
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=76.87 E-value=10 Score=26.60 Aligned_cols=45 Identities=27% Similarity=0.301 Sum_probs=27.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHh
Q psy14454 9 NNSERESLEQELSNAKLLIER------------------------LERTQRQEAARSQAELGSYKQRLD 53 (117)
Q Consensus 9 a~~eKdeaE~El~~~r~k~~R------------------------~~e~~kQEveRL~~EL~~~rQrLE 53 (117)
-.+|.+.+.+++..|.+++++ .....+.++++|++|+..+|.++-
T Consensus 24 Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 24 LEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666665555555 234556677777777777766653
No 8
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=74.94 E-value=16 Score=24.69 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=42.7
Q ss_pred hhhhhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14454 5 LKNENNSERESL---EQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDR 54 (117)
Q Consensus 5 ~l~Qa~~eKdea---E~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~ 54 (117)
.++|+++|.+++ +.||...+.|++.-+..-++|...+...|..|+...+-
T Consensus 19 ~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 19 EMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888876 67899999999999999999999999999999877653
No 9
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=74.64 E-value=15 Score=28.48 Aligned_cols=53 Identities=17% Similarity=0.081 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHH
Q psy14454 20 LSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQ 72 (117)
Q Consensus 20 l~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEq 72 (117)
+..|+.+.+-.++.++-.|..|..|..-+.|.|+..+..+..-+++.-+|-.+
T Consensus 4 ~~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 4 LTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567777777777888888888888888888876655554444433333333
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=72.39 E-value=27 Score=36.49 Aligned_cols=53 Identities=23% Similarity=0.194 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 29 RLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 29 R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
.+...+-.|.++|..++..|..+|++|.+=+..--.|.-|-++++.+++.++.
T Consensus 2049 ~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2049 EEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 34456677899999999999999999999998888899999998888887764
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=68.68 E-value=12 Score=34.65 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHh
Q psy14454 38 AARSQAELGSYKQRLD 53 (117)
Q Consensus 38 veRL~~EL~~~rQrLE 53 (117)
+..|..|+...+..++
T Consensus 986 v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 12
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.19 E-value=27 Score=23.55 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHhHh
Q psy14454 34 QRQEAARSQAELGSYKQRLDRADADLLHS 62 (117)
Q Consensus 34 ~kQEveRL~~EL~~~rQrLE~~q~D~~~~ 62 (117)
..+||.-|+--|+.+..-||.++..+..+
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 13
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=59.55 E-value=28 Score=21.50 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=37.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHH
Q psy14454 6 KNENNSERESLEQELSNAKLLIERLERTQRQEA---ARSQAELGSYKQRLDRA 55 (117)
Q Consensus 6 l~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEv---eRL~~EL~~~rQrLE~~ 55 (117)
+.+++.....+|.++..++....|..+.=..=. -+|..||.-||.=||..
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLEgE 54 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEGE 54 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 467788889999999999998888865332111 26888999999888743
No 14
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=57.96 E-value=25 Score=22.60 Aligned_cols=39 Identities=23% Similarity=0.488 Sum_probs=35.9
Q ss_pred HHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 44 ELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 44 EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.|..+|..+|..|..++.-=.+-+.++.++|..=+..++
T Consensus 4 ~L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~~~ 42 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRLLSERGRLVQEIGRLQTELGL 42 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 488999999999999999999999999999999887776
No 15
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=57.32 E-value=37 Score=22.11 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=28.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14454 10 NSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLD 53 (117)
Q Consensus 10 ~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE 53 (117)
+..+.++|..+++....-...+......|..|.++|...|+-+.
T Consensus 7 ~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 7 KGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777766666666666666666666666555444
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.41 E-value=79 Score=25.62 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 39 ARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 39 eRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
..+..|+...+.+++...+.+..-++|+-.+..+|..++..+.
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455556666666666666666666666666666655443
No 17
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=56.20 E-value=43 Score=24.46 Aligned_cols=23 Identities=13% Similarity=0.240 Sum_probs=9.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHH
Q psy14454 7 NENNSERESLEQELSNAKLLIER 29 (117)
Q Consensus 7 ~Qa~~eKdeaE~El~~~r~k~~R 29 (117)
.++++..+.++.++...+...+|
T Consensus 63 ~~a~a~l~~a~a~l~~a~~~~~r 85 (277)
T 2f1m_A 63 DSAKGDLAKAQAAANIAQLTVNR 85 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333
No 18
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.97 E-value=12 Score=26.18 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHHhhHHhHhHHHHhhHH
Q psy14454 42 QAELGSYKQRLDRADADLLHSRKENIRLT 70 (117)
Q Consensus 42 ~~EL~~~rQrLE~~q~D~~~~r~E~lrLt 70 (117)
+.++..+|.++.+....+.++..|+-+|.
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444555555555555555555555554
No 19
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.83 E-value=77 Score=25.30 Aligned_cols=69 Identities=14% Similarity=0.010 Sum_probs=34.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhH
Q psy14454 8 ENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANI 76 (117)
Q Consensus 8 Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~ 76 (117)
.-....+++.++.-..+-...|++.....++++|.-|-..++.-++..+.++.-+++.---++.+-+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNL 482 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHH
Confidence 333334444444444455555555555555555555555555555555555555555544444444433
No 20
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.81 E-value=43 Score=23.22 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHh
Q psy14454 34 QRQEAARSQAELGSYKQRLDRADADLL 60 (117)
Q Consensus 34 ~kQEveRL~~EL~~~rQrLE~~q~D~~ 60 (117)
..+|++.|+.++.+++++|+....-..
T Consensus 16 ~e~e~~~l~~~~~el~~~l~~~~~~~~ 42 (125)
T 1joc_A 16 GEGEIEKLQTKVLELQRKLDNTTAAVQ 42 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466999999999999999987655443
No 21
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=54.86 E-value=80 Score=29.05 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=9.5
Q ss_pred hhhhHHHHHHHHHHHHHH
Q psy14454 12 ERESLEQELSNAKLLIER 29 (117)
Q Consensus 12 eKdeaE~El~~~r~k~~R 29 (117)
+..+++.++..++.+..+
T Consensus 858 El~~L~~eL~el~~~L~~ 875 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQK 875 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666665554444
No 22
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=54.34 E-value=38 Score=23.20 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14454 12 ERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDR 54 (117)
Q Consensus 12 eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~ 54 (117)
.++.+|.+...+. ++.+.-++|..++..|+..++++++.
T Consensus 49 q~~~LE~e~~~L~----~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 49 QKHHLENEKTQLI----QQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777766664 44555667788888888888877763
No 23
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=54.31 E-value=51 Score=24.05 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhh-----HHhHhHHHHhhHHHHHHhHHHHHhhhhCChhhhh
Q psy14454 33 TQRQEAARSQAELGSYKQRLDRADA-----DLLHSRKENIRLTEQIANIEKELQMAKLSADDRE 91 (117)
Q Consensus 33 ~~kQEveRL~~EL~~~rQrLE~~q~-----D~~~~r~E~lrLtEqla~~E~qLhl~~~s~e~~~ 91 (117)
+-++|+.+|+.-|.-|+-.++.+.. -+++...|.-.|+-.|+++-+.-.. .+|.+...
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~-~lske~~~ 69 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQ-KLSKEAQK 69 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH-TCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHH
Confidence 4589999999999999999987754 3567889999999999999888777 77777663
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.34 E-value=89 Score=25.30 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=8.5
Q ss_pred hhhhhhhHHHHHHHHHHHHH
Q psy14454 9 NNSERESLEQELSNAKLLIE 28 (117)
Q Consensus 9 a~~eKdeaE~El~~~r~k~~ 28 (117)
.+.+.+..++.+...+.+++
T Consensus 468 l~~~~~~~~~~l~~~~~~i~ 487 (597)
T 3oja_B 468 LTNEQIQQEQLLQGLHAEID 487 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444433
No 25
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=52.19 E-value=62 Score=23.13 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=20.6
Q ss_pred HHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHh
Q psy14454 48 YKQRLDRADADLLHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 48 ~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLh 81 (117)
|+......-+|--....|.-.|.++|+.+++++.
T Consensus 74 Y~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 74 YKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333344444445566678889998888864
No 26
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=51.55 E-value=34 Score=22.74 Aligned_cols=39 Identities=23% Similarity=0.503 Sum_probs=35.6
Q ss_pred HHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 44 ELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 44 EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.|..+|..+|..|..++.-=.+-+.++.++|..=...++
T Consensus 18 ~L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~~~~ 56 (91)
T 1ybz_A 18 TLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNL 56 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 488999999999999999999999999999998877666
No 27
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=51.25 E-value=1.2e+02 Score=28.20 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=7.6
Q ss_pred hHhHHHHhhHHHHHHhHH
Q psy14454 60 LHSRKENIRLTEQIANIE 77 (117)
Q Consensus 60 ~~~r~E~lrLtEqla~~E 77 (117)
.+...|+-.|-.|+..++
T Consensus 1026 ~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1026 SELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 28
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=51.19 E-value=51 Score=22.47 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHHhhHHhHhHHHH
Q psy14454 43 AELGSYKQRLDRADADLLHSRKEN 66 (117)
Q Consensus 43 ~EL~~~rQrLE~~q~D~~~~r~E~ 66 (117)
.||.++++.|+.-++.+...+.+.
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455666666666665555555443
No 29
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.15 E-value=62 Score=22.54 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=24.6
Q ss_pred HhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 52 LDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 52 LE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.+.|-.=++-+|++.-.+-.....++.||+=
T Consensus 64 FeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 64 FDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677778888888888888888888888764
No 30
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=49.75 E-value=36 Score=22.46 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=35.9
Q ss_pred HHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 44 ELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 44 EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.|..+|..+|..|..++.-=.+-+.++.+||.+=+..++
T Consensus 13 ~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~ 51 (90)
T 2vkl_A 13 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMASGG 51 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 588999999999999999999999999999999877766
No 31
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=49.06 E-value=59 Score=21.97 Aligned_cols=18 Identities=11% Similarity=-0.010 Sum_probs=10.6
Q ss_pred CchhhhhhhhhhhhhHHH
Q psy14454 1 MSKLLKNENNSERESLEQ 18 (117)
Q Consensus 1 ~~~~~l~Qa~~eKdeaE~ 18 (117)
||--+|+|--.+.+.|=.
T Consensus 3 MS~ElleqLE~KIq~avd 20 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAID 20 (81)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 455566666666665555
No 32
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=48.02 E-value=90 Score=23.81 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhH----HhHhHHHHhhHHHHHHhHHHHHhhhhCChhhhhhhhcCchhhHH
Q psy14454 27 IERLERTQRQEAARSQAELGSYKQRLDRADAD----LLHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKE 102 (117)
Q Consensus 27 ~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D----~~~~r~E~lrLtEqla~~E~qLhl~~~s~e~~~~~lqa~~rekE 102 (117)
++...+.-...+++|..|+.++|-.++..... ...-++|.-.|.+....+...+.=....| ..+.. .++-
T Consensus 54 ~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~N----DdlEr--~~R~ 127 (189)
T 2v71_A 54 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN----DDLER--AKRA 127 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHH--HHHH
Confidence 33444455566777777777777777766555 34444444444444444333332111111 11121 3555
Q ss_pred HHHHHHHHHhh
Q psy14454 103 LTSLIMDMDAK 113 (117)
Q Consensus 103 Lt~~iqqMEaq 113 (117)
.+..+.+|+.+
T Consensus 128 ~~~SleD~e~k 138 (189)
T 2v71_A 128 TIMSLEDFEQR 138 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhhHHHHHHH
Confidence 66677777665
No 33
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=47.83 E-value=64 Score=22.07 Aligned_cols=40 Identities=28% Similarity=0.457 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 43 AELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 43 ~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
..|..+|.++|..|..++.-=.+-+.++.+||..-+..++
T Consensus 12 ~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~~~~ 51 (114)
T 3rmi_A 12 SELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKARYNL 51 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4689999999999999999999999999999998887766
No 34
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=47.09 E-value=61 Score=21.58 Aligned_cols=25 Identities=8% Similarity=0.282 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHH
Q psy14454 35 RQEAARSQAELGSYKQRLDRADADL 59 (117)
Q Consensus 35 kQEveRL~~EL~~~rQrLE~~q~D~ 59 (117)
.+...++..||.++..++-..+.|+
T Consensus 36 e~~~~~~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 36 EDRCKQLEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333333
No 35
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=46.76 E-value=61 Score=21.46 Aligned_cols=45 Identities=24% Similarity=0.269 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 38 AARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 38 veRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
|.-|.-|..++..+|..++.++...+.|-+..+...+.++++|.=
T Consensus 6 v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~ 50 (71)
T 1uix_A 6 VANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLT 50 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888899999999999999998888888888899998864
No 36
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.10 E-value=53 Score=22.75 Aligned_cols=45 Identities=9% Similarity=0.222 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 38 AARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 38 veRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
+.....||+.+|..+..-+.++..-+.-+-+|-..|+.+|....+
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555555666667777777665544
No 37
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=45.10 E-value=79 Score=22.31 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14454 13 RESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQR 51 (117)
Q Consensus 13 KdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQr 51 (117)
-.-+.-|+-+++.|.......+-..++.|+-||..+|..
T Consensus 12 ~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~ 50 (111)
T 2v66_B 12 NQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI 50 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777776666666777777777766643
No 38
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=43.27 E-value=58 Score=20.29 Aligned_cols=64 Identities=14% Similarity=0.280 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 17 EQELSNAKLLIERLERTQRQEAARS-QAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 17 E~El~~~r~k~~R~~e~~kQEveRL-~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
-+-|.+.|..-+--....+.|++.. +.-+..+.+....--.++..++.|...|--.|.+++-+|
T Consensus 8 ~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777788887764 355566666666666777888888888888888877766
No 39
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.94 E-value=83 Score=21.64 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 42 QAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 42 ~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
..||+.+|..+..-+.++..-+.-+-+|-..|+.+|.....
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555656666677777778777776554
No 40
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=41.38 E-value=99 Score=23.38 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=5.2
Q ss_pred hhhhhhhhHHHHH
Q psy14454 8 ENNSERESLEQEL 20 (117)
Q Consensus 8 Qa~~eKdeaE~El 20 (117)
++++..+.++.++
T Consensus 74 ~~~a~l~~~~a~l 86 (369)
T 4dk0_A 74 TRKAALASYQAQL 86 (369)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 41
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=40.93 E-value=76 Score=20.96 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=35.5
Q ss_pred HHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 44 ELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 44 EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.|..+|..+|..|..++.-=.+-+.++.++|..=+..++
T Consensus 6 ~L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~~~~ 44 (109)
T 1ecm_A 6 PLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHR 44 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 488899999999999999999999999999998877665
No 42
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.59 E-value=1.1e+02 Score=22.68 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 25 LLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 25 ~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
...+.......+|++-|++-| .+.|-.=++-+|++.-.+-.....++.+|+=
T Consensus 75 ~~aE~~~~~ie~ElEeLTasL------FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e 126 (154)
T 2ocy_A 75 TKAEEEADKLNKEVEDLTASL------FDEANNMVADARKEKYAIEILNKRLTEQLRE 126 (154)
T ss_dssp HHHHTHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555544 3667777788888888888888888888775
No 43
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=40.54 E-value=34 Score=27.36 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhH
Q psy14454 38 AARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANI 76 (117)
Q Consensus 38 veRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~ 76 (117)
+..|..++..+.++.+.--..+-.+|+|..+|-++|..+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666666666666666777766666666543
No 44
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=39.37 E-value=1.2e+02 Score=22.81 Aligned_cols=49 Identities=4% Similarity=0.095 Sum_probs=23.4
Q ss_pred hhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q psy14454 11 SERESLEQELSNAKLLIER---LERTQRQEAARSQAELGSYKQRLDRADADL 59 (117)
Q Consensus 11 ~eKdeaE~El~~~r~k~~R---~~e~~kQEveRL~~EL~~~rQrLE~~q~D~ 59 (117)
.+.+.++.++..++..... ...-.+-++.++..+|..++.++++.+..+
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555444433222 333344455555555555555555554443
No 45
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=38.24 E-value=1.1e+02 Score=21.82 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=40.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHH
Q psy14454 11 SERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLT 70 (117)
Q Consensus 11 ~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLt 70 (117)
|-|+++=+| ++.+++.+.....|.+||+-.-..+-.++..-+..+-+-|+||-+|-
T Consensus 30 mSKqELIqE----Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 30 MSKQELIKE----YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp SCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444 56667777777778888887666666788888888888888888774
No 46
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.28 E-value=65 Score=19.11 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHH
Q psy14454 25 LLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQI 73 (117)
Q Consensus 25 ~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEql 73 (117)
..+++..+...-.+.-+.+++.+++.+++..-.++...|.+...+-.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666667777888888888888888888888877766665554
No 47
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=37.17 E-value=84 Score=20.35 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH-hHhHHHHhhHHHHHHhHHHHHh
Q psy14454 26 LIERLERTQRQEAARSQAELGSYKQRLDRADADL-LHSRKENIRLTEQIANIEKELQ 81 (117)
Q Consensus 26 k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~-~~~r~E~lrLtEqla~~E~qLh 81 (117)
+-.|+++.-...|+.|..+|..+...|-. -++ ..--.+...|...++.++.+|-
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~lad--p~~y~~d~~~~~~l~~~l~~~e~eLe 73 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVAD--ASFFSQPHEQTQKVLADMAAAEQELE 73 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS--TTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cccccCCHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777777777766666632 222 1223455667777777777664
No 48
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=35.67 E-value=1e+02 Score=20.80 Aligned_cols=49 Identities=8% Similarity=0.205 Sum_probs=32.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14454 6 KNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDR 54 (117)
Q Consensus 6 l~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~ 54 (117)
++.-+..++++|..+++.......+++.-..-|..|.++|...|+.+.+
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ 62 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQ 62 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888999999988877777776666666666666666655444
No 49
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=35.42 E-value=64 Score=18.51 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=20.5
Q ss_pred hhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 56 DADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 56 q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
.+.++++-+||..|...++.+||+-
T Consensus 7 ekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 7 EKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 4567788889999999999998863
No 50
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=34.77 E-value=1.1e+02 Score=20.88 Aligned_cols=39 Identities=23% Similarity=0.461 Sum_probs=35.3
Q ss_pred HHHHHHHHHhHHhhHHh--------HhHHHHhhHHHHHHhHHHHHhh
Q psy14454 44 ELGSYKQRLDRADADLL--------HSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 44 EL~~~rQrLE~~q~D~~--------~~r~E~lrLtEqla~~E~qLhl 82 (117)
.|..+|..+|..|..++ .-=.+-++++.++|..=.+.++
T Consensus 4 ~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~ 50 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGI 50 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 47889999999999999 7778899999999999888877
No 51
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.69 E-value=1.5e+02 Score=22.36 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=33.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 11 SERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 11 ~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
.+.+.++..+.++. ........++..+...+...+..++..+.+......+.-.+...|...+.++.-
T Consensus 18 ~~i~~l~~~~~~lp----~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 18 KEIDSLEPLIREKR----KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHTHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444431 233333444444444444444444444444455555555555666666666654
No 52
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=34.51 E-value=41 Score=25.47 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHhHh
Q psy14454 36 QEAARSQAELGSYKQRLDRADADLLHS 62 (117)
Q Consensus 36 QEveRL~~EL~~~rQrLE~~q~D~~~~ 62 (117)
-|+.+|++|+.+...-++-+|.++.+.
T Consensus 60 KEi~~Lrae~~~~QRn~~K~~~~Lkrn 86 (167)
T 4gkw_A 60 KEIGKLRAELGTAQRNLEKADQLLKRN 86 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 489999999999999999999888654
No 53
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.09 E-value=1.5e+02 Score=22.18 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHH
Q psy14454 36 QEAARSQAELGSYKQRLDRADADLLHSRKENIRLTE 71 (117)
Q Consensus 36 QEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtE 71 (117)
.-++.|+.|+.++.-++..+...+...++||-.|.+
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555544433
No 54
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=33.89 E-value=1.6e+02 Score=22.69 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHH
Q psy14454 30 LERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQI 73 (117)
Q Consensus 30 ~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEql 73 (117)
.++.+.+||+.|+.+|.+.+.....-|-.++ -..|++.+++-|
T Consensus 35 ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~-~~~e~i~i~~DL 77 (190)
T 4emc_A 35 KLDTKATEIKQLQKQIDSLNAQVKELKTQTS-QQAENSEVIKDL 77 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHhhhHHHHH
Confidence 4558899999999999999998866444443 345566555543
No 55
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.82 E-value=1.3e+02 Score=21.10 Aligned_cols=58 Identities=10% Similarity=0.168 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhH
Q psy14454 19 ELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANI 76 (117)
Q Consensus 19 El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~ 76 (117)
|+..++..+++-.-.+...|..|..-|+.+...|+....-...++.||=.|-.+++.+
T Consensus 23 eie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 23 EISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444444443333333344455555555544
No 56
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=31.44 E-value=1.2e+02 Score=21.22 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy14454 13 RESLEQELSNAKLLIERLERTQ 34 (117)
Q Consensus 13 KdeaE~El~~~r~k~~R~~e~~ 34 (117)
|++|++||..||..-+++....
T Consensus 41 K~EA~~EIe~yR~qkE~eFk~~ 62 (119)
T 4efa_G 41 KTDAAKEIDSYKIQKDKELKEF 62 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777776665555443
No 57
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=31.29 E-value=1.6e+02 Score=21.68 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14454 12 ERESLEQELSNAKLLIERLERTQRQEAARSQAELGS 47 (117)
Q Consensus 12 eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~ 47 (117)
-|+++.+++..--..+++++.+-..+..|+-+|+..
T Consensus 26 ~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~ 61 (150)
T 4dci_A 26 WKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRR 61 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888999999999999999999998888888763
No 58
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=30.86 E-value=1.1e+02 Score=19.91 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14454 13 RESLEQELSNAKLLIERLERTQRQEAARSQAELGSY 48 (117)
Q Consensus 13 KdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~ 48 (117)
+.++|.-+++........+.....-|..|.++|...
T Consensus 12 ~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~ 47 (86)
T 1x8y_A 12 LAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEM 47 (86)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544444444333333333333333
No 59
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=30.63 E-value=1.2e+02 Score=20.25 Aligned_cols=31 Identities=3% Similarity=0.141 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHhHh
Q psy14454 32 RTQRQEAARSQAELGSYKQRLDRADADLLHS 62 (117)
Q Consensus 32 e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~ 62 (117)
..+.+....+..||.++..++-....|+-.+
T Consensus 33 k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 33 KAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666555555555555543
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.57 E-value=2e+02 Score=22.80 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=20.4
Q ss_pred HHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 44 ELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 44 EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
|..-.++-.+..+...-+.++|+-++-..|.++..++
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 4434444555555555566666666666666555554
No 61
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.54 E-value=46 Score=20.36 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=15.3
Q ss_pred HHhHHhhHHhHhHHHHhhHHHHHHhHHHH
Q psy14454 51 RLDRADADLLHSRKENIRLTEQIANIEKE 79 (117)
Q Consensus 51 rLE~~q~D~~~~r~E~lrLtEqla~~E~q 79 (117)
=|+++-.++..-.+||-.|.+++..++.+
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35555556666666666666666665544
No 62
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=29.97 E-value=80 Score=21.85 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14454 25 LLIERLERTQRQEAARSQAELGSYKQRLDRA 55 (117)
Q Consensus 25 ~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~ 55 (117)
+|+.|.......|++.++..|.+.+...+..
T Consensus 52 aKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~ 82 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLKDEIQSENKAFQAH 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888888776654
No 63
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=29.15 E-value=94 Score=23.49 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=10.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHH
Q psy14454 8 ENNSERESLEQELSNAKLLIERL 30 (117)
Q Consensus 8 Qa~~eKdeaE~El~~~r~k~~R~ 30 (117)
+++...+.++..+...+...+|.
T Consensus 95 ~a~~~l~~a~a~l~~a~~~~~r~ 117 (359)
T 3lnn_A 95 QANSDAAKARAAMTMARRNLDRQ 117 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444554444444444443
No 64
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.82 E-value=1e+02 Score=18.80 Aligned_cols=15 Identities=20% Similarity=0.073 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy14454 38 AARSQAELGSYKQRL 52 (117)
Q Consensus 38 veRL~~EL~~~rQrL 52 (117)
++.|..++..++.+|
T Consensus 35 ~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 35 YEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 65
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=28.18 E-value=1.6e+02 Score=20.81 Aligned_cols=42 Identities=7% Similarity=0.104 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhh
Q psy14454 27 IERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIR 68 (117)
Q Consensus 27 ~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lr 68 (117)
..+.-+..+.+|..|..-+....+.|.-.++..++++...-.
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556678889999999999999999999999999987643
No 66
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=26.77 E-value=1.5e+02 Score=20.10 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14454 19 ELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRA 55 (117)
Q Consensus 19 El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~ 55 (117)
.|..+|.++.-++..-..+|++|..+|...++++..-
T Consensus 41 qL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 41 QLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777788888889999999998888877543
No 67
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=26.71 E-value=1.3e+02 Score=19.21 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=21.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhH
Q psy14454 8 ENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSR 63 (117)
Q Consensus 8 Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r 63 (117)
+.+.++|.+......+..+ ++.+.+....+..||.++..++-....|+-.+.
T Consensus 10 ~lk~e~d~a~~~~~~~e~~----l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 10 MLKLDKENALDRAEQAEAD----KKAAEERSKQLEDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455444444433333 222333333344444444444444444443333
No 68
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=26.31 E-value=2e+02 Score=21.41 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=14.7
Q ss_pred HHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 49 KQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 49 rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
++.++.+..++..++.+.-.+-.++..++.++
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l 144 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTIDAQIKRNQASL 144 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444444444444444443
No 69
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=26.10 E-value=1.4e+02 Score=19.51 Aligned_cols=55 Identities=15% Similarity=0.299 Sum_probs=40.5
Q ss_pred HHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhhhCChhhhhhhhcCchhhHHHHHHHHH
Q psy14454 44 ELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKELTSLIMD 109 (117)
Q Consensus 44 EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~~~s~e~~~~~lqa~~rekELt~~iqq 109 (117)
.|..+|+.+|..|..++.-=.+-+.++.++|..=+. ++. .-.+.||++.-..+..
T Consensus 9 ~L~~lR~~ID~iD~~il~LL~~R~~~~~~i~~~K~~-~~~----------i~dp~RE~~vl~~~~~ 63 (101)
T 3ret_A 9 GLADIREAIDRIDLDIVQALGRRMDYVKAASRFEAS-EAA----------IPAPERVAAMLPERAR 63 (101)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSS-GGG----------TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC----------CCCHHHHHHHHHHHHH
Confidence 478899999999999999999999999999986554 441 2234456555555444
No 70
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=25.75 E-value=1.5e+02 Score=19.73 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 41 SQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 41 L~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
|.--+.++.++|+..+..-.+.+.|.-++.++|+.==.+|
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL 64 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFEL 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3344555666666666666666666666666665543333
No 71
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=23.35 E-value=2.3e+02 Score=21.08 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHH--HhhHHHHHHhHHHHHh
Q psy14454 17 EQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKE--NIRLTEQIANIEKELQ 81 (117)
Q Consensus 17 E~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E--~lrLtEqla~~E~qLh 81 (117)
+.++..+..++.-.....+...-|+.+|+.-+|.|.++...++...-.+ +..|-.-+-++++-+.
T Consensus 41 ~~~~~~l~~~l~e~~~~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~ 107 (197)
T 1dkg_A 41 DEKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALE 107 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3344444433332222234578899999999999998887776654333 2344555666666554
No 72
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=23.12 E-value=2.4e+02 Score=23.12 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HhhHHhHhHHHHhhHHHHHHhHHHHH
Q psy14454 25 LLIERLERTQRQEAARSQAELGSYKQRLDR-ADADLLHSRKENIRLTEQIANIEKEL 80 (117)
Q Consensus 25 ~k~~R~~e~~kQEveRL~~EL~~~rQrLE~-~q~D~~~~r~E~lrLtEqla~~E~qL 80 (117)
...+..-+...++++.|+++.|.+-..+-. ...|...-+.+.-.|.++|..++.++
T Consensus 31 ~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (421)
T 1ses_A 31 LALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEAL 87 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777777666542 11233344555555666666655544
No 73
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=22.80 E-value=59 Score=20.18 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=17.1
Q ss_pred HHHhhHHHHHHhHHHHHhh
Q psy14454 64 KENIRLTEQIANIEKELQM 82 (117)
Q Consensus 64 ~E~lrLtEqla~~E~qLhl 82 (117)
.-|++|+-|+-.+-||||-
T Consensus 4 etcmslasqvvkltkql~e 22 (48)
T 2kes_A 4 ETCMSLASQVVKLTKQLKE 22 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999987
No 74
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.13 E-value=3e+02 Score=21.43 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHH
Q psy14454 30 LERTQRQEAARSQAELGSYKQRLDRADADLLHSRK 64 (117)
Q Consensus 30 ~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~ 64 (117)
....-.+.+++.+.|++|.+-+|+...+.++..|.
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777777777777777666666654
No 75
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=21.10 E-value=1.2e+02 Score=20.75 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=24.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14454 5 LKNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQ 50 (117)
Q Consensus 5 ~l~Qa~~eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQ 50 (117)
||.+-+.|-|.+-++...++...+-+.+-+ |.-=-+||...|+
T Consensus 15 LLD~ir~Efe~~~~e~~~~k~q~~~eyE~k---i~~Qi~Emq~Ir~ 57 (92)
T 3vp9_A 15 LLDAIRQEFLQVSQEANTYRLQNQKDYDFK---MNQQLAEMQQIRN 57 (92)
T ss_dssp --CCTTTTTTTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHH---HHHHHHHHHHHHH
Confidence 566677777877788777776655444433 3333344444444
No 76
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.72 E-value=97 Score=24.74 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=7.0
Q ss_pred HHHhhHHHHHHhHHHHH
Q psy14454 64 KENIRLTEQIANIEKEL 80 (117)
Q Consensus 64 ~E~lrLtEqla~~E~qL 80 (117)
..|-+|++.+..+..++
T Consensus 68 arNe~L~~~Lk~ar~El 84 (251)
T 3m9b_A 68 ARNSKLMETLKEARQQL 84 (251)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 77
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=20.62 E-value=1.3e+02 Score=19.56 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14454 25 LLIERLERTQRQEAARSQAELGS 47 (117)
Q Consensus 25 ~k~~R~~e~~kQEveRL~~EL~~ 47 (117)
+|+.|.......|++.++..|.|
T Consensus 35 aKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 67788888888888888887766
No 78
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.01 E-value=1.9e+02 Score=23.83 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14454 12 ERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRL 52 (117)
Q Consensus 12 eKdeaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrL 52 (117)
+++.++.|+.+++-+. +.-++++.++..|+..++++|
T Consensus 4 ~~~~l~~el~~~~~~~----~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 4 MHAALSTEVVHLRQRT----EELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4555565555554433 233344455555555555544
Done!