Query psy14454
Match_columns 117
No_of_seqs 25 out of 27
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 20:16:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14454.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14454hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ybza1 a.130.1.1 (A:2-75) mon 41.3 31 0.0022 20.3 7.1 41 43-83 1-41 (74)
2 d1ivsa1 a.2.7.3 (A:797-862) Va 38.6 19 0.0014 20.7 3.8 24 36-59 4-27 (66)
3 d2d8da1 a.130.1.1 (A:3-82) Cho 27.0 56 0.004 18.9 7.0 38 45-82 3-40 (80)
4 d2efka1 a.238.1.4 (A:10-288) C 26.0 82 0.006 20.5 9.4 64 14-77 87-150 (279)
5 d2efla1 a.238.1.4 (A:1-288) Fo 24.2 90 0.0065 20.4 10.0 63 14-76 96-158 (288)
6 d1ecma_ a.130.1.1 (A:) Chorism 23.2 70 0.0051 18.8 6.9 38 45-82 3-40 (91)
7 d2h9da1 a.130.1.1 (A:1-94) Sal 22.3 42 0.0031 20.4 3.4 56 44-110 9-64 (94)
8 d1vf7a_ f.46.1.1 (A:) Multidru 17.4 1.2E+02 0.0088 19.2 7.0 14 70-83 97-110 (237)
9 d2gtvx1 a.130.1.3 (X:1-93) Cho 15.1 1.2E+02 0.0087 18.1 7.2 40 43-82 3-50 (93)
10 d1seta1 a.2.7.1 (A:1-110) Sery 11.3 1.6E+02 0.012 17.6 7.2 57 26-82 32-89 (110)
No 1
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=41.30 E-value=31 Score=20.29 Aligned_cols=41 Identities=22% Similarity=0.485 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhh
Q psy14454 43 AELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMA 83 (117)
Q Consensus 43 ~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~ 83 (117)
+.|..+|+.+|..|..+...=.+=+.++.+||..=++.++.
T Consensus 1 t~L~~lR~~ID~iD~~i~~Ll~~R~~~~~~I~~~K~~~~~~ 41 (74)
T d1ybza1 1 TTLKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNLP 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46889999999999999998888899999999999988873
No 2
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=38.65 E-value=19 Score=20.74 Aligned_cols=24 Identities=17% Similarity=0.190 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHH
Q psy14454 36 QEAARSQAELGSYKQRLDRADADL 59 (117)
Q Consensus 36 QEveRL~~EL~~~rQrLE~~q~D~ 59 (117)
.|+.||.-+|..+...++..+..+
T Consensus 4 ~E~~RL~K~l~kl~~~i~~~~~kL 27 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAERSQRKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566665555555555544443
No 3
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=27.03 E-value=56 Score=18.94 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=33.8
Q ss_pred HHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 45 LGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 45 L~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
|.++|..+|..|..+..-=.+=+.++.++|.+=+..++
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~~~~~i~~~K~~~~~ 40 (80)
T d2d8da1 3 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTELGL 40 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 77899999999999998888889999999999887776
No 4
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.98 E-value=82 Score=20.55 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHH
Q psy14454 14 ESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIE 77 (117)
Q Consensus 14 deaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E 77 (117)
+++-..+.++.....+....-..++.++..++.....-++.+..+...+.++.=++...+..+.
T Consensus 87 ~~i~~~l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~ 150 (279)
T d2efka1 87 VRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLD 150 (279)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666667777777777788888888888877777777777666666655555444443
No 5
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.21 E-value=90 Score=20.38 Aligned_cols=63 Identities=10% Similarity=0.173 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhH
Q psy14454 14 ESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANI 76 (117)
Q Consensus 14 deaE~El~~~r~k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~ 76 (117)
+..-..+.++.....+....-..++.++..++......++.+..+...+-+|.-++...+..+
T Consensus 96 ~~i~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~ 158 (288)
T d2efla1 96 SQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKM 158 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555666666666666666677777777777777777777666666666555555444443
No 6
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=23.16 E-value=70 Score=18.79 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=34.0
Q ss_pred HHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 45 LGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 45 L~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
|.++|..+|..|..+...=.+=+.|+.+||..=.+.++
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~~~~ 40 (91)
T d1ecma_ 3 LLALREKISALDEKLLALLAERRELAVEVGKAKLLSHR 40 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67889999999999998888889999999999887777
No 7
>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.30 E-value=42 Score=20.36 Aligned_cols=56 Identities=11% Similarity=0.233 Sum_probs=36.4
Q ss_pred HHHHHHHHHhHHhhHHhHhHHHHhhHHHHHHhHHHHHhhhhCChhhhhhhhcCchhhHHHHHHHHHH
Q psy14454 44 ELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKELTSLIMDM 110 (117)
Q Consensus 44 EL~~~rQrLE~~q~D~~~~r~E~lrLtEqla~~E~qLhl~~~s~e~~~~~lqa~~rekELt~~iqqM 110 (117)
.|..+|+++|..|..++.-=.+=+.++.+||.+=+... . .-..+||.++-..+...
T Consensus 9 ~L~~lR~~ID~ID~~i~~LL~~R~~l~~~i~~~K~~~~--~---------v~d~~Re~~vl~~~~~~ 64 (94)
T d2h9da1 9 GLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEA--A---------IPAPERVAAMLPERARW 64 (94)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcC--C---------CCcHHHHHHHHHHHHHH
Confidence 37889999999999999888888889999987643211 1 23455676665555443
No 8
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.40 E-value=1.2e+02 Score=19.23 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=6.5
Q ss_pred HHHHHhHHHHHhhh
Q psy14454 70 TEQIANIEKELQMA 83 (117)
Q Consensus 70 tEqla~~E~qLhl~ 83 (117)
..++..++..|-.+
T Consensus 97 ~~~l~~a~~~l~~~ 110 (237)
T d1vf7a_ 97 KAAVEQARINLRYT 110 (237)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhccc
Confidence 33445555554443
No 9
>d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246 {Methanococcus jannaschii [TaxId: 2190]}
Probab=15.07 E-value=1.2e+02 Score=18.09 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhHHhhHHhH--------hHHHHhhHHHHHHhHHHHHhh
Q psy14454 43 AELGSYKQRLDRADADLLH--------SRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 43 ~EL~~~rQrLE~~q~D~~~--------~r~E~lrLtEqla~~E~qLhl 82 (117)
.+|.++|..+|.-|..+.- -=.+=+.++.++|..=+..++
T Consensus 3 ~~L~~lR~~Id~iD~~ii~~~~~~~~~Ll~~R~~l~~~I~~~K~~~~~ 50 (93)
T d2gtvx1 3 EKLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGI 50 (93)
T ss_dssp THHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3688999999999998872 234448999999999887777
No 10
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=11.32 E-value=1.6e+02 Score=17.60 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hHHhHhHHHHhhHHHHHHhHHHHHhh
Q psy14454 26 LIERLERTQRQEAARSQAELGSYKQRLDRAD-ADLLHSRKENIRLTEQIANIEKELQM 82 (117)
Q Consensus 26 k~~R~~e~~kQEveRL~~EL~~~rQrLE~~q-~D~~~~r~E~lrLtEqla~~E~qLhl 82 (117)
+++..-+...++++.|+++-+.+-..+-.+. .+...-..+.-.|.++|..+|.++.-
T Consensus 32 ~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~ 89 (110)
T d1seta1 32 ALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALRE 89 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554433332111 11222345555666666666666543
Done!