RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14454
(117 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.024
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 4 LLKNENNSER---ESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLL 60
L K E ++ E L N K L+ ++ QRQ + ++ Y ++ DR D
Sbjct: 72 LSKQEEMVQKFVEEVLRI---NYKFLMSPIKTEQRQPSMMTR----MYIEQRDRLYNDNQ 124
Query: 61 HSRKENIRLTEQIANIEKELQMAK 84
K N+ + + + L +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELR 148
Score = 26.4 bits (57), Expect = 3.4
Identities = 27/159 (16%), Positives = 48/159 (30%), Gaps = 48/159 (30%)
Query: 1 MSKLLKNENNSERESLEQELSNAKLLIER--------------LERTQRQEAARSQAELG 46
+S + + S+ + +L L+ ++ L+ E A ++ +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 47 SYKQRLDRADADLL--------------HSRKENIRLTEQIANIEKE------LQMAKLS 86
Y DL+ H + NI E++ L+ K+
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK--NIEHPERMTLFRMVFLDFRFLE-QKIR 508
Query: 87 ADDRE--------DLLQDPKKDKELTSLIMDMDAKHGRL 117
D + LQ K K I D D K+ RL
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKP---YICDNDPKYERL 544
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.1 bits (68), Expect = 0.15
Identities = 14/102 (13%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 1 MSKLLKNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLL 60
+ ++ + R ++EL K+ +ER ++ + ++ ++++D
Sbjct: 887 LKAIVYLQCCYRRMMAKRELKKLKIEARSVER-YKKLHIGLENKIMQLQRKIDEQ----- 940
Query: 61 HSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKE 102
KE L E++ N+E + L+ +++ +
Sbjct: 941 --NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAK 980
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.8 bits (67), Expect = 0.17
Identities = 15/111 (13%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 7 NENNSERESLEQELSNAKLLIERLERTQR---QEAARSQAELGSYKQRLDRADADLLHSR 63
+ +E++ ++Q++ + + +E E ++ E + ++ + + +
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT 1003
Query: 64 KENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDK-ELTSLIMDMDAK 113
KE L E+++++ L + E+ ++ K K + S+I +++ +
Sbjct: 1004 KERKLLEERVSDLTTNLA-------EEEEKAKNLTKLKNKHESMISELEVR 1047
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 29.1 bits (65), Expect = 0.33
Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 5 LKNENNSERESLEQELSNAKLLIERLERTQRQ------EAARSQAELGSYKQRLDRADAD 58
L+N N + ++ ++ L + + + + E + + E K ++DR+ A
Sbjct: 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIAL 2078
Query: 59 LLHSRKENIRLTEQIANIEKELQ 81
L + E R +Q N ++
Sbjct: 2079 LDNLNSERGRWEQQSENFNTQMS 2101
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Roseobacter denitrificans}
Length = 531
Score = 27.9 bits (63), Expect = 0.77
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 31 ERTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMAKLSADDR 90
+ K L++ L R+ RL I+ + KL+A +R
Sbjct: 5 HHHHHHSSGLVPRGSHMMKDILEQ-----LEDRRAAARLGGGQKRIDAQHGRGKLTARER 59
Query: 91 EDLLQDPKKDKELTSLIMDMDAKH 114
DLL D +E DM H
Sbjct: 60 VDLLLDEGSFEEF-----DMFVTH 78
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
accase, ligase, transferase; 2.2A {Mycobacterium
tuberculosis} PDB: 2a7s_A
Length = 548
Score = 27.2 bits (61), Expect = 1.4
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 33 TQRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMAKLSADDRED 92
+ + ++ + +L LH R+E +EK KL+A +R
Sbjct: 10 HSAERSTEHTIDIHTTAGKLAE-----LHKRREESLHPVGEDAVEKVHAKGKLTARERIY 64
Query: 93 LLQDPKKDKELTSLIMDMDAKH 114
L D EL D AKH
Sbjct: 65 ALLDEDSFVEL-----DALAKH 81
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A
{Sulfolobus tokodaii}
Length = 522
Score = 26.8 bits (60), Expect = 2.2
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 60 LHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKELTSLIMDMDAKH 114
L KE I+ + KL+A +R LL D K E+ A
Sbjct: 15 LRQLKEKAYKGGGDERIQFQHSKGKLTARERLALLFDDGKFNEI-----MTFATT 64
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A*
3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 26.0 bits (58), Expect = 3.0
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 37 EAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQD 96
E Q ++ + +L L R E +EK+ KL+A +R DLL D
Sbjct: 3 EPEEQQPDIHTTAGKLAD-----LRRRIEEATHAGSARAVEKQHAKGKLTARERIDLLLD 57
Query: 97 PKKDKELTSLIMDMDAKH 114
EL D A+H
Sbjct: 58 EGSFVEL-----DEFARH 70
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 26.0 bits (58), Expect = 3.8
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 57 ADLLHSRKENIRLTEQIANIEKELQM--AKLS 86
LL + R +++ + + KL+
Sbjct: 793 EGLLDVEEWRRRQEKRLKELLALAERSQRKLA 824
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
duplication, multienzyme complex, transcarboxylase; HET:
MCA; 1.90A {Propionibacterium freudenreichii} SCOP:
c.14.1.4 c.14.1.4 PDB: 1on9_A*
Length = 523
Score = 26.0 bits (58), Expect = 3.8
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 60 LHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKELTSLIMDMDAKH 114
L +++ I +EK+ K +A +R + L DP E+ KH
Sbjct: 19 LAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEV-----GAFRKH 68
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 25.9 bits (56), Expect = 4.5
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 3 KLLKNENNSERESLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHS 62
+ E + LEQE A+ +ER + + EA +++ EL + ++
Sbjct: 667 NSQEAAAKHEAQRLEQE---ARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAK 723
Query: 63 RKENIRLTEQIANIEKELQMAKLSADDRE 91
+ R E + AKL A
Sbjct: 724 AEAESRAEAARIEGEGSVLQAKLKAQALA 752
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 25.4 bits (56), Expect = 5.0
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 26 LIERLE-RTQRQEAARSQAELGSYKQRLDRADADLLHSRKENIR 68
L+ ++ + +A L + + +A+A+L +R R
Sbjct: 58 LLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSR 101
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima}
SCOP: c.14.1.4 c.14.1.4
Length = 527
Score = 25.6 bits (57), Expect = 5.1
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 60 LHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKELTSLIMDMDAKH 114
L ++ I +EK+ + KL+A +R +LL DP E+ D +H
Sbjct: 22 LKKIEKEIEQGGGPEKVEKQHRAGKLTAWERLELLLDPGTFVEI-----DKFVEH 71
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 5.3
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 14/44 (31%)
Query: 34 QRQEAARSQAELGSYKQRLDRADADLLHSRKENIRLTEQIANIE 77
++Q + QA L Y D A A L I+ A +E
Sbjct: 18 EKQALKKLQASLKLYAD--DSAPA-LA------IK-----ATME 47
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 24.8 bits (55), Expect = 5.8
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 15 SLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKE 65
L E+ N K L+ R + L + +L + L ++++
Sbjct: 47 RLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQD 97
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport,
biotin, glutamate fermentation, lyase; HET: COO; 1.75A
{Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Length = 588
Score = 25.0 bits (55), Expect = 6.5
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 54 RADADLLHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKELTSL 106
+A +H + + EK + +LSA R + L DP L SL
Sbjct: 32 KAVESDIHESIKKALDAGITS-EEKLNERGQLSAMQRINALIDPGTWCPLNSL 83
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 24.4 bits (54), Expect = 8.1
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 15 SLEQELSNAKLLIERLERTQRQEAARSQAELGSYKQRLDRADADLLHSRKE 65
+LE EL + + LE + + R +L ++ + + L R E
Sbjct: 49 NLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCE 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.125 0.312
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,574,097
Number of extensions: 82747
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 102
Length of query: 117
Length of database: 6,701,793
Length adjustment: 80
Effective length of query: 37
Effective length of database: 4,468,113
Effective search space: 165320181
Effective search space used: 165320181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.9 bits)