RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14454
         (117 letters)



>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B
           subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
          Length = 258

 Score = 27.4 bits (60), Expect = 0.37
 Identities = 15/55 (27%), Positives = 19/55 (34%)

Query: 60  LHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKELTSLIMDMDAKH 114
           L  R E          +EK+    KL+A +R DLL D     EL           
Sbjct: 12  LRRRIEEATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNF 66


>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B
           subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 258

 Score = 27.0 bits (59), Expect = 0.52
 Identities = 15/52 (28%), Positives = 20/52 (38%)

Query: 60  LHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKELTSLIMDMD 111
           LH R+E          +EK     KL+A +R   L D     EL +L     
Sbjct: 13  LHKRREESLHPVGEDAVEKVHAKGKLTARERIYALLDEDSFVELDALAKHRS 64


>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
           subunit, PccB {Thermotoga maritima [TaxId: 2336]}
          Length = 251

 Score = 25.1 bits (54), Expect = 2.5
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 47  SYKQRLDRADADLLHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKELTSL 106
           S + +++      L   ++ I        +EK+ +  KL+A +R +LL DP    E+   
Sbjct: 2   SLRDKIEE-----LKKIEKEIEQGGGPEKVEKQHRAGKLTAWERLELLLDPGTFVEIDKF 56

Query: 107 IMDMDAKH 114
           +   +   
Sbjct: 57  VEHRNTYF 64


>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
           {Cryptosporidium parvum [TaxId: 5807]}
          Length = 223

 Score = 24.1 bits (52), Expect = 5.0
 Identities = 7/42 (16%), Positives = 18/42 (42%)

Query: 69  LTEQIANIEKELQMAKLSADDREDLLQDPKKDKELTSLIMDM 110
             + + N E  ++ A  +    E+   D ++  E T  ++ +
Sbjct: 161 KYDLLGNPEGAMKFANRAIQAAENSRSDSEQFSENTEKLLKI 202


>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase
           (transcarboxylase 12S) {Propionibacterium freudenreichii
           [TaxId: 1744]}
          Length = 253

 Score = 23.3 bits (49), Expect = 9.0
 Identities = 11/55 (20%), Positives = 21/55 (38%)

Query: 60  LHSRKENIRLTEQIANIEKELQMAKLSADDREDLLQDPKKDKELTSLIMDMDAKH 114
           L  +++ I        +EK+    K +A +R + L DP    E+ +         
Sbjct: 13  LAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLF 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.125    0.312 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 357,156
Number of extensions: 14337
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 25
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.1 bits)