BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14456
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 3 DGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGG 61
D +R VCF D ++ GA D I + D + L GH + SL Y G
Sbjct: 123 DLYIRSVCFSPDGK-----FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 177
Query: 62 ATVLSGSHDRTVRFWDLRTRGCTNVLT 88
++SGS DRTVR WDLRT C+ L+
Sbjct: 178 DKLVSGSGDRTVRIWDLRTGQCSLTLS 204
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQAL-------SGHSGHVLSL-YNWGGATVLSGSHDRTVR 74
I+ G+ D + V D TG + L +GH V S+ + G +V+SGS DR+V+
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 75 FWDLRT 80
W+L+
Sbjct: 282 LWNLQN 287
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 26 GAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG-GATVLSGSHDRTVRFWDLRT 80
G+GD + + D TGQ LS G + G G + +GS DR VR WD T
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 48 GHSGHVLSLYN-WGGATVLSGSHDRTVRFWDLRT 80
GH VLS+ +LSGS DR V FWD ++
Sbjct: 308 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 341
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 26 GAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTN 85
GA D I V D + LSGH G V +L G ++SGS DRTVR WD++ CT+
Sbjct: 138 GADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTH 197
Query: 86 VL 87
V
Sbjct: 198 VF 199
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 22 LISGGAGDCKIYVTDCATGQAFQALSGHSGHVLS-LYNWGGATVLSGSHDRTVRFWDLRT 80
++ G+ D + V D A + LSGH+ + S +Y+ +S S D T+R WDL
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN 341
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 45 ALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
L GH V ++ G V+SGS+D T+ WD+ C +L+
Sbjct: 265 VLRGHXASVRTVSG-HGNIVVSGSYDNTLIVWDVAQXKCLYILS 307
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%)
Query: 26 GAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTN 85
GA D I V D + LSGH G V +L G ++SGS DRTVR WD++ CT+
Sbjct: 138 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTH 197
Query: 86 VL 87
V
Sbjct: 198 VF 199
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 22 LISGGAGDCKIYVTDCATGQAFQALSGHSGHVLS-LYNWGGATVLSGSHDRTVRFWDLRT 80
++ G+ D + V D A + LSGH+ + S +Y+ +S S D T+R WDL
Sbjct: 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G V+SGS+D T+ WD+ C +L+
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMKCLYILS 307
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 88 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 142
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 175
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 140 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 200 WDTASGQCLKTL 211
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 276
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 277 VSGSEDNLVYIWNLQTKEIVQKL 299
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 172 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 225
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 255
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS---HDRTVRFW 76
I G+ D +Y+ + T + Q L GH+ V+S +++ + +D+T++ W
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 69 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 123
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 124 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 156
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 121 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 181 WDTASGQCLKTL 192
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 257
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 258 VSGSEDNLVYIWNLQTKEIVQKL 280
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 153 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 206
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 236
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS---HDRTVRFW 76
I G+ D +Y+ + T + Q L GH+ V+S +++ + +D+T++ W
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 64 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 176 WDTASGQCLKTL 187
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQKL 275
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 148 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS---HDRTVRFW 76
I G+ D +Y+ + T + Q L GH+ V+S +++ + +D+T++ W
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 70 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 182 WDTASGQCLKTL 193
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKL 281
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 154 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS---HDRTVRFW 76
I G+ D +Y+ + T + Q L GH+ V+S +++ + +D+T++ W
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 81 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 135
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 136 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 168
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 133 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 193 WDTASGQCLKTL 204
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 269
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 270 VSGSEDNLVYIWNLQTKEIVQKL 292
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 165 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 218
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 248
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS---HDRTVRFW 76
I G+ D +Y+ + T + Q L GH+ V+S +++ + +D+T++ W
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 70 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 182 WDTASGQCLKTL 193
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKL 281
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 154 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS---HDRTVRFW 76
I G+ D +Y+ + T + Q L GH+ V+S +++ + +D+T++ W
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 65 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 119
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 152
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 117 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 177 WDTASGQCLKTL 188
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 253
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 254 VSGSEDNLVYIWNLQTKEIVQKL 276
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 149 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 202
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 232
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS---HDRTVRFW 76
I G+ D +Y+ + T + Q L GH+ V+S +++ + +D+T++ W
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 70 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 182 WDTASGQCLKTL 193
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKL 281
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 154 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS---HDRTVRFW 76
I G+ D +Y+ + T + Q L GH+ V+S +++ + +D+T++ W
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 64 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 176 WDTASGQCLKTL 187
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQKL 275
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 148 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS---HDRTVRFW 76
I G+ D +Y+ + T + Q L GH+ V+S +++ + +D+T++ W
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 60 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 114
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 147
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 112 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 172 WDTASGQCLKTL 183
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 248
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 249 VSGSEDNLVYIWNLQTKEIVQKL 271
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 144 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 197
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 227
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS---HDRTVRFW 76
I G+ D +Y+ + T + Q L GH+ V+S +++ + +D+T++ W
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 67 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 179 WDTASGQCLKTL 190
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKL 278
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 151 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 10 CFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS- 68
C + S I G+ D +Y+ + T + Q L GH+ V+S +++ +
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 69 --HDRTVRFW 76
+D+T++ W
Sbjct: 302 LENDKTIKLW 311
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 63 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 117
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 150
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 115 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 175 WDTASGQCLKTL 186
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 251
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 252 VSGSEDNLVYIWNLQTKEIVQKL 274
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 147 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 200
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 230
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 10 CFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS- 68
C + S I G+ D +Y+ + T + Q L GH+ V+S +++ +
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 297
Query: 69 --HDRTVRFW 76
+D+T++ W
Sbjct: 298 LENDKTIKLW 307
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 67 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 179 WDTASGQCLKTL 190
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKL 278
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 151 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 67 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 179 WDTASGQCLKTL 190
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKL 278
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 151 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 16 SNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVR 74
S+ S+LL+S + D + + D ++G+ + L GHS +V +N ++SGS D +VR
Sbjct: 96 SSDSNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 75 FWDLRTRGCTNVLTPITVP 93
WD++T C L + P
Sbjct: 155 IWDVKTGKCLKTLPAHSDP 173
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG+ + L HS V ++ +N G+ ++S S+D R
Sbjct: 138 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 198 WDTASGQCLKTL 209
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYN----WGGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ GG +
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 274
Query: 65 LSGSHDRTVRFWDLRTR 81
+SGS D V W+L+T+
Sbjct: 275 VSGSEDNLVYIWNLQTK 291
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 170 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 10 CFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS- 68
C + S I G+ D +Y+ + T + Q L GH+ V+S +++ +
Sbjct: 261 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Query: 69 --HDRTVRFW 76
+D+T++ W
Sbjct: 321 LENDKTIKLW 330
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 67 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG + L HS V ++ +N G+ ++S S+D R
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 179 WDTASGQCLKTL 190
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + D K++ D + G+ + +GH ++ N+ GG +
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKL 278
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS---HDRTVRFW 76
I G+ D +Y+ + T + Q L GH+ V+S +++ + +D+T++ W
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H + DV + D S+LL+S + D + + D ++G+ + L GHS +V +N
Sbjct: 67 HKLGISDVAWSSD----SNLLVSA-SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
++SGS D +VR WD++T C L + P
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
N S LI G+ D + + D TG + L HS V ++ +N G+ ++S S+D R
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 76 WDLRTRGCTNVL 87
WD + C L
Sbjct: 179 WDTASGQCLKTL 190
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NW---GGATV 64
V F++ + N +L + K++ D + G+ + +GH ++ N+ GG +
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 65 LSGSHDRTVRFWDLRTRGCTNVL 87
+SGS D V W+L+T+ L
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKL 278
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL--YN 58
H V V F D SL++S G C+I+ D A+GQ + L +S ++
Sbjct: 151 HSDPVSAVHFNRD----GSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 59 WGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+ + D T++ WD C T
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGS---HDRTVRFW 76
I G+ D +Y+ + T + Q L GH+ V+S +++ + +D+T++ W
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 16 SNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLS-LYNWGGATVLSGSHDRTVR 74
S K + G+ D I + D +TG L GH V L++ GG +LS + D+T+R
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 363
Query: 75 FWDLRTRGCTNVL 87
WD + + C L
Sbjct: 364 VWDYKNKRCMKTL 376
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNW-G 60
H +V+D+ F + S L++ + D I + D + + + GH +V S+
Sbjct: 149 HTDSVQDISF-----DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G ++S S D+T++ W+++T C T
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFT 231
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
HD VR V F + I A D + V D + + L+ H V SL ++
Sbjct: 337 HDNWVRGVLF-----HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 391
Query: 61 GATVLSGSHDRTVRFWDLR 79
V++GS D+TV+ W+ R
Sbjct: 392 APYVVTGSVDQTVKVWECR 410
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 33 YVTDC---ATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVL 87
+V +C A ++ ++S +G G +LSGS D+T++ WD+ T C L
Sbjct: 277 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLY-NWG 60
HD V V + + + I + D I + + TG + +GH V + N
Sbjct: 191 HDHNVSSVSIMPNGDH-----IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 61 GATVLSGSHDRTVRFWDLRTRGC 83
G + S S+D+TVR W + T+ C
Sbjct: 246 GTLIASCSNDQTVRVWVVATKEC 268
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRG 82
+ GA D + V D T L GH+ V SL + G V+SGS D ++R WD+ T
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL-QFDGIHVVSGSLDTSIRVWDVETGN 310
Query: 83 CTNVLT 88
C + LT
Sbjct: 311 CIHTLT 316
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 18 KSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGH--VLSLYNWGGATVLSGSHDRTVRF 75
K ++L+SG A D + + D TGQ Q L G + H ++ + V++ S D TV+
Sbjct: 328 KDNILVSGNA-DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKL 386
Query: 76 WDLRT 80
WDL+T
Sbjct: 387 WDLKT 391
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRG 82
+ G+ D + V D TGQ L GH V + + G V+SG++D V+ WD T
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV-QYDGRRVVSGAYDFMVKVWDPETET 270
Query: 83 CTNVL 87
C + L
Sbjct: 271 CLHTL 275
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 22 LISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTR 81
+I G+ D + V + TG+ L GH+ V ++ V+SGS D T+R WD+ T
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH-LHEKRVVSGSRDATLRVWDIETG 229
Query: 82 GCTNVL 87
C +VL
Sbjct: 230 QCLHVL 235
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRG 82
I G+ D + V TG+ + L GH+G V S ++SGS DRT++ W+ T
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS-SQMRDNIIISGSTDRTLKVWNAETGE 190
Query: 83 CTNVL 87
C + L
Sbjct: 191 CIHTL 195
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRG 82
+ G+ D I V D TG L+GH + S ++SG+ D TV+ WD++T
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSGMELKDNILVSGNADSTVKIWDIKTGQ 350
Query: 83 CTNVL 87
C L
Sbjct: 351 CLQTL 355
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 44 QALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVL 87
+ L GH HV++ + G ++SGS D T++ W T C L
Sbjct: 112 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL 155
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 23/108 (21%)
Query: 1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
MH G V DVC+ +D S + + D + D ++ QA Q ++ H V +++ W
Sbjct: 84 MHTGPVLDVCWSDDGSK-----VFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIH-WI 136
Query: 61 GA----TVLSGSHDRTVRFWDLRTRG------------CTNVLTPITV 92
A V++GS D+T++FWD R+ C +V+ P+ V
Sbjct: 137 KAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV 184
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRG 82
I G D I + D T + + L+GH+G VL L + +++GS D TVR WD+ T
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL-QYDERVIITGSSDSTVRVWDVNTGE 204
Query: 83 CTNVL 87
N L
Sbjct: 205 MLNTL 209
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRG 82
I +GD I V + +T + + L+GH + L + V+SGS D T+R WD+
Sbjct: 269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL-QYRDRLVVSGSSDNTIRLWDIECGA 327
Query: 83 CTNVL 87
C VL
Sbjct: 328 CLRVL 332
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 22 LISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDL 78
L+ G+ D I + D G + L GH ++ + ++SG++D ++ WDL
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVLEGHE-ELVRCIRFDNKRIVSGAYDGKIKVWDL 363
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSG---------HSGH 52
H+ VR + F NK I GA D KI V D +A +G HSG
Sbjct: 335 HEELVRCIRF----DNKR---IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 387
Query: 53 VLSLYNWGGATVLSGSHDRTVRFWDL 78
V L + ++S SHD T+ WD
Sbjct: 388 VFRL-QFDEFQIVSSSHDDTILIWDF 412
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 58 NWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
+ ++SG D T++ WD T C +LT
Sbjct: 140 QYDDQKIVSGLRDNTIKIWDKNTLECKRILT 170
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 15 TSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL---YNWGGATVLSGSHDR 71
T++ +L + G G C ++ D +GQ Q+ GH VL L + G T +SG D+
Sbjct: 163 TNSDMQILTASGDGTCALW--DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK 220
Query: 72 TVRFWDLRTRGCTNVL 87
WD+R+ C
Sbjct: 221 KAMVWDMRSGQCVQAF 236
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSG 67
+C S + +SGG D K V D +GQ QA H V S+ Y G SG
Sbjct: 200 LCLDLAPSETGNTFVSGGC-DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASG 258
Query: 68 SHDRTVRFWDLR 79
S D T R +DLR
Sbjct: 259 SDDATCRLYDLR 270
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 19 SSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFW 76
S L+ G D I V D G L GH V +L + G SGS D T+R W
Sbjct: 295 SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR 79
D + + D ATG+ +Q GH V+S+ + + ++SGS D+T++ W ++
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 36 DCATGQAFQALSGHSGHVLS--LYNWGGATVLSGSHDRTVRFWDLRT 80
D G ++ GHS H++ GA LS S D+T+R WD+ T
Sbjct: 51 DQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDKTLRLWDVAT 96
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR 79
D + + D ATG+ +Q GH V+S+ + + ++SGS D+T++ W ++
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 36 DCATGQAFQALSGHSGHVLS--LYNWGGATVLSGSHDRTVRFWDLRT 80
D G ++ GHS H++ GA LS S D+T+R WD+ T
Sbjct: 51 DQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDKTLRLWDVAT 96
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR 79
D + + D ATG+ +Q GH V+S+ + + ++SGS D+T++ W ++
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 131
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 36 DCATGQAFQALSGHSGHVLS--LYNWGGATVLSGSHDRTVRFWDLRT 80
D G ++ GHS H++ GA LS S D+T+R WD+ T
Sbjct: 45 DQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDKTLRLWDVAT 90
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR 79
D + + D ATG+ +Q GH V+S+ + + ++SGS D+T++ W ++
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 36 DCATGQAFQALSGHSGHVLS--LYNWGGATVLSGSHDRTVRFWDLRT 80
D G ++ GHS H++ GA LS S D+T+R WD+ T
Sbjct: 51 DQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDKTLRLWDVAT 96
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR 79
D + + D ATG+ +Q GH V+S+ + + ++SGS D+T++ W ++
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 36 DCATGQAFQALSGHSGHVLS--LYNWGGATVLSGSHDRTVRFWDLRT 80
D G ++ GHS H++ GA LS S D+T+R WD+ T
Sbjct: 51 DQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDKTLRLWDVAT 96
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQAL-----SGHSGHVLSL 56
H G ++ D + LI+G +GD + D TGQ SGH+ VLSL
Sbjct: 156 HKGYASSCQYVPDQETR---LITG-SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211
Query: 57 Y--NWGGATVLSGSHDRTVRFWDLR 79
+ +SGS D TVR WDLR
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDLR 236
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCA-TGQAFQALSGHSGHVLSL-YNWGG 61
G DV + S +++ ISG D + + D T +A + GH G + S+ + G
Sbjct: 203 GHTADVLSLSINSLNANMFISGSC-DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 62 ATVLSGSHDRTVRFWDLRT 80
+GS D T R +D+RT
Sbjct: 262 QRFGTGSDDGTCRLFDMRT 280
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H +VR V F D +S A D K GQ Q L+GHS V + ++
Sbjct: 507 HSSSVRGVAFSPDGQTIAS------ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 560
Query: 61 GATVLSGSHDRTVRFWD 77
G T+ S S D+TV+ W+
Sbjct: 561 GQTIASASSDKTVKLWN 577
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H +VR V F D +S A D K GQ Q L+GHS V + ++
Sbjct: 15 HSSSVRGVAFSPDGQTIAS------ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 61 GATVLSGSHDRTVRFWD 77
G T+ S S D+TV+ W+
Sbjct: 69 GQTIASASDDKTVKLWN 85
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H +VR V F D +S A D K GQ Q L+GHS V + ++
Sbjct: 97 HSSSVRGVAFSPDGQTIAS------ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 150
Query: 61 GATVLSGSHDRTVRFWD 77
G T+ S S D+TV+ W+
Sbjct: 151 GQTIASASDDKTVKLWN 167
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H +VR V F D +S A D K GQ Q L+GHS V + ++
Sbjct: 466 HSSSVRGVAFSPDGQTIAS------ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD 519
Query: 61 GATVLSGSHDRTVRFWD 77
G T+ S S D+TV+ W+
Sbjct: 520 GQTIASASDDKTVKLWN 536
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H +VR V F D +S A D K GQ Q L+GHS V + +
Sbjct: 220 HSSSVRGVAFSPDGQTIAS------ASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPD 273
Query: 61 GATVLSGSHDRTVRFWD 77
G T+ S S D+TV+ W+
Sbjct: 274 GQTIASASDDKTVKLWN 290
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 17/82 (20%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGG 61
H +VR V F D +S A D K GQ Q L+GHS V WG
Sbjct: 384 HSSSVRGVAFSPDGQTIAS------ASDDKTVKLWNRNGQLLQTLTGHSSSV-----WGV 432
Query: 62 A------TVLSGSHDRTVRFWD 77
A T+ S S D+TV+ W+
Sbjct: 433 AFSPDDQTIASASDDKTVKLWN 454
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H +V V F D +S A D K GQ Q L+GHS V + ++
Sbjct: 261 HSSSVNGVAFRPDGQTIAS------ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 314
Query: 61 GATVLSGSHDRTVRFWD 77
G T+ S S D+TV+ W+
Sbjct: 315 GQTIASASDDKTVKLWN 331
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H +V V F D +S A D K GQ Q L+GHS V + ++
Sbjct: 425 HSSSVWGVAFSPDDQTIAS------ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD 478
Query: 61 GATVLSGSHDRTVRFWD 77
G T+ S S D+TV+ W+
Sbjct: 479 GQTIASASDDKTVKLWN 495
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H +V V F D +S A D K GQ Q L+GHS V + ++
Sbjct: 138 HSSSVWGVAFSPDGQTIAS------ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 191
Query: 61 GATVLSGSHDRTVRFWD 77
G T+ S S D+TV+ W+
Sbjct: 192 GQTIASASDDKTVKLWN 208
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H +V V F D +S A D K GQ Q L+GHS V + ++
Sbjct: 302 HSSSVWGVAFSPDGQTIAS------ASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPD 355
Query: 61 GATVLSGSHDRTVRFWD 77
G T+ S S D+TV+ W+
Sbjct: 356 GQTIASASDDKTVKLWN 372
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H +V V F D +S A D K GQ Q L+GHS V + ++
Sbjct: 56 HSSSVWGVAFSPDGQTIAS------ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD 109
Query: 61 GATVLSGSHDRTVRFWD 77
G T+ S S D+TV+ W+
Sbjct: 110 GQTIASASDDKTVKLWN 126
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H +V V F D +S A D K GQ Q L+GHS V + ++
Sbjct: 179 HSSSVWGVAFSPDGQTIAS------ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD 232
Query: 61 GATVLSGSHDRTVRFWD 77
G T+ S S D+TV+ W+
Sbjct: 233 GQTIASASDDKTVKLWN 249
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H +V V F D +S A D K GQ Q L+GHS V + ++
Sbjct: 343 HSSSVWGVAFSPDGQTIAS------ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD 396
Query: 61 GATVLSGSHDRTVRFWD 77
G T+ S S D+TV+ W+
Sbjct: 397 GQTIASASDDKTVKLWN 413
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLR 79
D + + D ATG+ +Q GH V S+ + + ++SGS D+T++ W ++
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK 137
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 36 DCATGQAFQALSGHSGHVLS--LYNWGGATVLSGSHDRTVRFWDLRT 80
D G ++ GHS H++ GA LS S D+T+R WD+ T
Sbjct: 51 DQKFGVPVRSFKGHS-HIVQDCTLTADGAYALSASWDKTLRLWDVAT 96
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 11 FIEDT--SNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSG 67
F+ED S+ +SG + D ++ + D A G + + GH+ VLS+ ++ ++S
Sbjct: 432 FVEDVVLSSDGQFALSG-SWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 68 SHDRTVRFWD 77
S DRT++ W+
Sbjct: 491 SRDRTIKLWN 500
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 31 KIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDL 78
K+ D A G A + L+GHS V + + G LSGS D +R WDL
Sbjct: 411 KLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 8 DVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLS 66
VC I + + L+ G ++ + T L GH+ VLSL + GATV S
Sbjct: 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 301
Query: 67 GSHDRTVRFW 76
+ D T+R W
Sbjct: 302 AAADETLRLW 311
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.0 bits (71), Expect = 0.098, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVL---SGSHDRTVRFWDLR 79
I+ + D K+ + D ATG+ HS V + + L +GS+D ++ WDL
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 80 TRGCTNVL 87
+ C N +
Sbjct: 732 QKECRNTM 739
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 16 SNKSS-LLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTV 73
+NKS+ LL++ G+ D + + D + + GH+ V ++ + S S D T+
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767
Query: 74 RFWDLRT 80
R WD+R+
Sbjct: 768 RLWDVRS 774
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 29 DCKIYVTDCATGQAFQALSGHSGHVLS-LYNWGGATVLSGSHDRTVRFWDLRTRGCTN 85
D ++ V DC GH V +++ G++ L+ S D+T+R W+ + + C N
Sbjct: 870 DSRLKVADC---------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK-KVCKN 917
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.0 bits (71), Expect = 0.099, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVL---SGSHDRTVRFWDLR 79
I+ + D K+ + D ATG+ HS V + + L +GS+D ++ WDL
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 80 TRGCTNVL 87
+ C N +
Sbjct: 739 QKECRNTM 746
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 16 SNKSS-LLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTV 73
+NKS+ LL++ G+ D + + D + + GH+ V ++ + S S D T+
Sbjct: 715 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 774
Query: 74 RFWDLRT 80
R WD+R+
Sbjct: 775 RLWDVRS 781
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 29 DCKIYVTDCATGQAFQALSGHSGHVLS-LYNWGGATVLSGSHDRTVRFWDLRTRGCTN 85
D ++ V DC GH V +++ G++ L+ S D+T+R W+ + + C N
Sbjct: 877 DSRLKVADC---------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK-KVCKN 924
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 26 GAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD 77
G+ D + + D TG + GH+ VLS+ ++ ++SGS D+T++ W+
Sbjct: 81 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 40 GQAFQALSGHSGHVLS--LYNWGGATVLSGSHDRTVRFWDLRT 80
G +AL GHS H +S + + G LSGS D T+R WDL T
Sbjct: 53 GIPQRALRGHS-HFVSDVVISSDGQFALSGSWDGTLRLWDLTT 94
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 26 GAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD 77
G+ D + + D TG + GH+ VLS+ ++ ++SGS D+T++ W+
Sbjct: 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 40 GQAFQALSGHSGHVLS--LYNWGGATVLSGSHDRTVRFWDLRT 80
G +AL GHS H +S + + G LSGS D T+R WDL T
Sbjct: 76 GIPQRALRGHS-HFVSDVVISSDGQFALSGSWDGTLRLWDLTT 117
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSG 67
VC I + + L+ G ++ + T L GH+ VLSL + GATV S
Sbjct: 334 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 393
Query: 68 SHDRTVRFW 76
+ D T+R W
Sbjct: 394 AADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 9 VCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSG 67
VC I + + L+ G ++ + T L GH+ VLSL + GATV S
Sbjct: 323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 382
Query: 68 SHDRTVRFW 76
+ D T+R W
Sbjct: 383 AADETLRLW 391
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 10 CFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGS 68
C S + +++SGG D + V D ATG+ L GH+ +V S+ + G+ S
Sbjct: 157 CVRFSPSLDAPVIVSGG-WDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSD 215
Query: 69 HDRTVRFWDLRTRG 82
D R WDL T+G
Sbjct: 216 KDGVARLWDL-TKG 228
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWG 60
+H+ VR + ++D S + D I + D TG + GH V +
Sbjct: 182 IHNDVVRHLAVVDDGHFISC------SNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLP 235
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLT 88
++S DRTVR W V+T
Sbjct: 236 NGDIVSCGEDRTVRIWSKENGSLKQVIT 263
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATG--QAFQALSGHSGHVLSLYNWGG 61
G + VC+ ++ LL+ GG V AT L GH G+V SL ++
Sbjct: 60 GFLNSVCY----DSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSL-SFQD 114
Query: 62 ATVLSGSHDRTVRFW 76
V+SGS D+T + W
Sbjct: 115 GVVISGSWDKTAKVW 129
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 40 GQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT 80
G +AL+GH+ V L + +S S D+T+R WDLRT
Sbjct: 66 GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT 107
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 46 LSGHSGHVLSLY-------NWGGATVLSGSHDRTVRFWDL 78
L GHS V S+ N ++SGS D+TV W L
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL 56
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 39 TGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR 81
+ QA HS V+SL +N G T+ S D +RFWD++T+
Sbjct: 290 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 333
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 39 TGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR 81
+ QA HS V+SL +N G T+ S D +RFWD++T+
Sbjct: 280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 26 GAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD 77
G+ D +I V + TG+ H ++ S+ + VLSGS D TV+ W+
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHV-LSLYNWGGA 62
G R V +++ + + D I + D T L GH +V ++++
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 63 TVLSGSHDRTVRFWDLRTRGCTNVL 87
++SGS D T++ W+ T L
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTL 266
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 26 GAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD 77
G+ D +I V + TG+ H ++ S+ + VLSGS D TV+ W+
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHV-LSLYNWGGA 62
G R V +++ + + D I + D T L GH +V ++++
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 63 TVLSGSHDRTVRFWDLRTRGCTNVL 87
++SGS D T++ W+ T L
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTL 266
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H G V + DT L GA D + D G Q +GH + ++ +
Sbjct: 183 HTGDVMSLSLAPDTR-----LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237
Query: 61 GATVLSGSHDRTVRFWDLR 79
G +GS D T R +DLR
Sbjct: 238 GNAFATGSDDATCRLFDLR 256
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H G V + DT L GA D + D G Q +GH + ++ +
Sbjct: 183 HTGDVMSLSLAPDTR-----LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237
Query: 61 GATVLSGSHDRTVRFWDLR 79
G +GS D T R +DLR
Sbjct: 238 GNAFATGSDDATCRLFDLR 256
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H G V + DT L GA D + D G Q +GH + ++ +
Sbjct: 183 HTGDVMSLSLAPDTR-----LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237
Query: 61 GATVLSGSHDRTVRFWDLR 79
G +GS D T R +DLR
Sbjct: 238 GNAFATGSDDATCRLFDLR 256
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H G V + DT L GA D + D G Q +GH + ++ +
Sbjct: 183 HTGDVMSLSLAPDTR-----LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237
Query: 61 GATVLSGSHDRTVRFWDLR 79
G +GS D T R +DLR
Sbjct: 238 GNAFATGSDDATCRLFDLR 256
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
H G V + DT L GA D + D G Q +GH + ++ +
Sbjct: 194 HTGDVMSLSLAPDTR-----LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 248
Query: 61 GATVLSGSHDRTVRFWDLR 79
G +GS D T R +DLR
Sbjct: 249 GNAFATGSDDATCRLFDLR 267
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTR 81
++ GA D I + D ATG+ L GH+ + SL ++ +++ S D ++ +D++
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238
Query: 82 GCTNVLT 88
L+
Sbjct: 239 NLAGTLS 245
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 26 GAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD 77
G+ D +I V + TG+ H ++ S+ + VLSGS D TV+ W+
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 29 DCKIYVTDCATGQAFQALSGHSGHV-LSLYNWGGATVLSGSHDRTVRFWDLRT 80
D I + D T L GH +V ++++ ++SGS D T++ W+ T
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 64 VLSGSHDRTVRFWDLRTRGCTNVL 87
+++ S D T++ WD +T+ C L
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATL 224
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 26 GAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWD 77
G+ D +I V + TG+ H ++ S+ + VLSGS D TV+ W+
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 29 DCKIYVTDCATGQAFQALSGHSGHV-LSLYNWGGATVLSGSHDRTVRFWDLRT 80
D I + D T L GH +V ++++ ++SGS D T++ W+ T
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 64 VLSGSHDRTVRFWDLRTRGCTNVL 87
+++ S D T++ WD +T+ C L
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATL 224
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 27 AGDCKIYVTDCA---TGQAFQALSGHSGHV--LSLYNWGGATVLSGSHDRTVRFWDLR 79
A D K+ + D T + ++ H+ V LS + + +GS D+TV WDLR
Sbjct: 247 ADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRF 75
NK L+ + D V G+ L GH+G + S+ + ++GS D +++
Sbjct: 41 NKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100
Query: 76 WDLRTRGC 83
WD+ C
Sbjct: 101 WDVSNGQC 108
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 27 AGDCKIYVTDCA---TGQAFQALSGHSGHV--LSLYNWGGATVLSGSHDRTVRFWDLR 79
A D K+ + D T + + H+ V LS + + +GS D+TV WDLR
Sbjct: 251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 27 AGDCKIYVTDCA---TGQAFQALSGHSGHV--LSLYNWGGATVLSGSHDRTVRFWDLR 79
A D K+ + D T + + H+ V LS + + +GS D+TV WDLR
Sbjct: 253 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 310
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 27 AGDCKIYVTDCA---TGQAFQALSGHSGHV--LSLYNWGGATVLSGSHDRTVRFWDLR 79
A D K+ + D T + + H+ V LS + + +GS D+TV WDLR
Sbjct: 255 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 312
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 27 AGDCKIYVTDC---ATGQAFQALSGHSGHV--LSLYNWGGATVLSGSHDRTVRFWDLR 79
A D K+ + D T + + H+ V LS + + +GS D+TV WDLR
Sbjct: 249 ADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
>pdb|1NM2|A Chain A, "malonyl-Coa:acp Transacylase"
Length = 317
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGG-----AGDCKIYVTDCATGQAFQ--ALSGHSGHVL 54
H GT D I DTS LL++ G A + V D ATG F A++GHS +
Sbjct: 44 HFGTKADADEIRDTSVAQPLLVAAGILSAAALGTQTSVAD-ATGPGFTPGAVAGHSVGEI 102
Query: 55 SLYNWGGATVLSGSHDRTVRFWDLRTRG 82
+ A V +G D T +R RG
Sbjct: 103 T------AAVFAGVLDDTAALSLVRRRG 124
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 27 AGDCKIYVTDC---ATGQAFQALSGHSGHV--LSLYNWGGATVLSGSHDRTVRFWDLR 79
A D K+ + D T + + H+ V LS + + +GS D+TV WDLR
Sbjct: 249 ADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 15 TSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTV 73
T++ LL++ G+ DC + + D + + GH+ V ++ + S S D T+
Sbjct: 714 TNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTL 773
Query: 74 RFWD 77
+ WD
Sbjct: 774 KLWD 777
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 29 DCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVL---SGSHDRTVRFWDLRTRGCTN 85
D K+ + + TG+ HS V + + L +GS D ++ WDL + C N
Sbjct: 684 DKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRN 743
Query: 86 VL 87
+
Sbjct: 744 TM 745
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 17 NKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFW 76
N ++ L+ + D + + G + GHS ++S G V+S S D +VR W
Sbjct: 256 NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLW 315
Query: 77 DLR 79
L+
Sbjct: 316 SLK 318
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 20 SLLISGGAGD-CKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFW 76
LL S D K+Y + L GH V SL ++ G + S S DRTVR W
Sbjct: 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 48 GHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRT 80
HSG V L ++ G + S S D+T++ W++ T
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|K Chain K, Architecture Of Mammalian Fatty Acid Synthase
Length = 304
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ--ALSGHSGHVLSLYNW 59
H GT D I DTS LL++ G ++ A G F A++GHS ++
Sbjct: 43 HFGTKADADEIRDTSVAQPLLVAAG------ILSAAALGTGFTPGAVAGHSVGEIT---- 92
Query: 60 GGATVLSGSHDRTVRFWDLRTRG 82
A V +G D T +R RG
Sbjct: 93 --AAVFAGVLDDTAALSLVRRRG 113
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|5 Chain 5, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|6 Chain 6, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|7 Chain 7, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|8 Chain 8, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|9 Chain 9, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|M Chain M, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|N Chain N, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|O Chain O, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|P Chain P, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Q Chain Q, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|R Chain R, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 305
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQ--ALSGHSGHVLSLYNW 59
H GT D I DTS LL++ G ++ A G F A++GHS ++
Sbjct: 44 HFGTKADADEIRDTSVAQPLLVAAG------ILSAAALGTGFTPGAVAGHSVGEIT---- 93
Query: 60 GGATVLSGSHDRTVRFWDLRTRG 82
A V +G D T +R RG
Sbjct: 94 --AAVFAGVLDDTAALSLVRRRG 114
>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex
Length = 1253
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 11 FIEDTSNKSSLLISGGAGDCKIYVTDCA-------TGQAFQALSGHSGHVLSLYNW 59
FI + + S+ + G+G + TD Q Q LS S HV+ +Y+W
Sbjct: 359 FISELARYSNSEVVTGSGRQEAQKTDAEYRKLFDLALQGLQLLSQWSAHVMEVYSW 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,758,196
Number of Sequences: 62578
Number of extensions: 92417
Number of successful extensions: 539
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 238
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)