RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14456
(93 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 51.3 bits (121), Expect = 9e-10
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW 59
+ V F S LL++G D V D L+GH V L
Sbjct: 268 NIICGITSVSF----SKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322
Query: 60 GGATVLSGSHDRTVRFWD 77
G V +GS D ++ W+
Sbjct: 323 DGMAVATGSWDSFLKIWN 340
Score = 42.0 bits (97), Expect = 2e-06
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGA-GDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW 59
H+ + +CF + +G C+++ + + S+ ++
Sbjct: 225 HESDINAICF----FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280
Query: 60 GGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G +L+G D WD VL
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Score = 30.9 bits (68), Expect = 0.017
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 46 LSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
L GH + ++ + ++S S D + WD T + + +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW 99
Score = 25.5 bits (54), Expect = 1.0
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 57 YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
+SG+ D + + WD+R C T
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 50.1 bits (118), Expect = 2e-09
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
HD VR V F + ++S D + V D + + L+ H V SL ++
Sbjct: 246 HDNWVRGVLF----HSGGKFILSCAD-DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 300
Query: 61 GATVLSGSHDRTVRFWD 77
V++GS D+TV+ W+
Sbjct: 301 APYVVTGSVDQTVKVWE 317
Score = 46.7 bits (109), Expect = 3e-08
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 16 SNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVR 74
S K + G+ D I + D +TG L GH V + ++ GG +LS + D+T+R
Sbjct: 213 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 272
Query: 75 FWDLRTRGCTNVLT 88
WD + + C L
Sbjct: 273 VWDYKNKRCMKTLN 286
Score = 38.2 bits (87), Expect = 4e-05
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 44 QALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
ALSGH V + ++ + ++S S D T++ WD T L
Sbjct: 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK 56
Score = 34.7 bits (78), Expect = 7e-04
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNW 59
H V V F S+++S D I V D TG + L GH+ V +
Sbjct: 16 HRSPVTRVIF----HPVFSVMVSASE-DATIKVWDYETGDFERTLKGHTDSVQDISFD 68
Score = 29.7 bits (65), Expect = 0.035
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 22/103 (21%)
Query: 7 RDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHS---------------- 50
R+ + + +L+ S D + V AT + L H
Sbjct: 143 REWVRMVRPNQDGTLIASCS-NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 201
Query: 51 -----GHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G G +LSGS D+T++ WD+ T C L
Sbjct: 202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 48.6 bits (114), Expect = 8e-09
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 12/86 (13%)
Query: 1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL---- 56
H V V + ++SG D + D +G L GH V+S+
Sbjct: 306 GHKDFVLSVAT----TQNDEYILSGSK-DRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360
Query: 57 ---YNWGGATVLSGSHDRTVRFWDLR 79
+GS D R W +
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWKYK 386
Score = 38.6 bits (88), Expect = 3e-05
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 18/100 (18%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSG------------H 49
H +V V F + ++SG D + + + H
Sbjct: 253 HKDSVYSVVF----TRDGQSVVSGSL-DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307
Query: 50 SGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
VLS+ +LSGS DR V FWD ++ +L
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347
Score = 24.4 bits (51), Expect = 2.5
Identities = 6/51 (11%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 44 QALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPITVP 93
H+ V + ++ G + +G ++T + + + L+ +
Sbjct: 56 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAA 105
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 46.7 bits (109), Expect = 4e-08
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 36 DCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
++ + L GH HV++ + G ++SGS D T++ W T C L
Sbjct: 2 RRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54
Score = 32.1 bits (71), Expect = 0.005
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 27 AGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNV 86
A D + V D T L GH+ + + + G V+SGS D ++R WD+ T C +
Sbjct: 154 AYDFMVKVWDPETETCLHTLQGHT-NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT 212
Query: 87 LT 88
LT
Sbjct: 213 LT 214
Score = 30.6 bits (67), Expect = 0.020
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 22 LISGGAGDCKIYVTDCATGQAFQALSGHSGHV--LSLYNWGGATVLSGSHDRTVRFWDLR 79
++ G D + + D TGQ Q L G + H ++ + V++ S D TV+ WDL+
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288
Query: 80 TRGCTNVLTPITVP 93
T L +
Sbjct: 289 TGEFIRNLVTLESG 302
Score = 29.0 bits (63), Expect = 0.074
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL 56
HD V ++SG D + V TG+ + L GH+G V S
Sbjct: 15 HDDHVITCLQFCGN-----RIVSGSD-DNTLKVWSAVTGKCLRTLVGHTGGVWSS 63
Score = 28.6 bits (62), Expect = 0.079
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATV 64
T++ + + + G+ D I V D TG L+GH + +
Sbjct: 172 TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM-ELKDNIL 230
Query: 65 LSGSHDRTVRFWDLRTRGC 83
+SG+ D TV+ WD++T C
Sbjct: 231 VSGNADSTVKIWDIKTGQC 249
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 42.9 bits (99), Expect = 9e-07
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNW 59
+H+ V + F + +S G D + G + S S VLS +
Sbjct: 263 LHESCVLSLKF----AYCGKWFVSTGK-DNLLNAWRTPYGASIF-QSKESSSVLSCDISV 316
Query: 60 GGATVLSGSHDRTVRFWDL 78
+++GS D+ +++
Sbjct: 317 DDKYIVTGSGDKKATVYEV 335
Score = 28.6 bits (62), Expect = 0.092
Identities = 4/31 (12%), Positives = 8/31 (25%)
Query: 57 YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL 87
+ + G +S D + W
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303
Score = 28.2 bits (61), Expect = 0.13
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTD---CATGQAFQALSGHSGHVLSL-Y 57
H V V SN + + +GG G K++ + + ++ S
Sbjct: 50 HGEVVCAVTI----SNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL 105
Query: 58 NWGGATVLSGSHDRTVRFW 76
G T++ G T+ W
Sbjct: 106 LPDGCTLIVGGEASTLSIW 124
Score = 25.5 bits (54), Expect = 0.97
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 48 GHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLTPIT 91
H V ++ + V +G V+ WD+ G + ++ +
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD 92
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 41.0 bits (94), Expect = 4e-06
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYN-- 58
+ + F S + + S A D I + + AT + + + +
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290
Query: 59 WGGATVLSGSHDRTVRFWDL 78
W ++S S + + F +
Sbjct: 291 WTKQALVSISANGFINFVNP 310
Score = 32.2 bits (71), Expect = 0.005
Identities = 11/74 (14%), Positives = 19/74 (25%), Gaps = 3/74 (4%)
Query: 4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGA 62
T R + + + +Y + + + HS + G
Sbjct: 14 RTARGTAVVLGNTPAGDKIQY--CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY 71
Query: 63 TVLSGSHDRTVRFW 76
SG VR W
Sbjct: 72 YCASGDVHGNVRIW 85
Score = 31.8 bits (70), Expect = 0.008
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 57 YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
++ G + S S D+T++ W++ T +
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIP 277
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 40.6 bits (93), Expect = 5e-06
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 46 LSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
L GH V++ + V++G+ D+ +R +D + L+
Sbjct: 8 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS 50
Score = 34.5 bits (77), Expect = 9e-04
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGG 61
H +V ED +I+G D I V D + LSGH G V +L G
Sbjct: 11 HMTSVITCLQFEDN-----YVITGAD-DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64
Query: 62 ATVLSGSHDRTVRFWDLRTRGC 83
++SGS DRTVR WD++ C
Sbjct: 65 GILVSGSTDRTVRVWDIKKGCC 86
Score = 33.3 bits (74), Expect = 0.002
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQA-LSGHSGHVLSLYNW 59
++ I ++L+SG + + + + +G+ A + + + S+
Sbjct: 276 KFSYHHTNLSAITTFYVSDNILVSGS--ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 333
Query: 60 GGATVLSGSHDRTVRFWDL 78
G V + D L
Sbjct: 334 GKTLVAAVEKDGQSFLEIL 352
Score = 27.5 bits (59), Expect = 0.22
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 7/85 (8%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGG 61
HDG V + + +L+SG +S
Sbjct: 52 HDGGVWALKYAHG-----GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 106
Query: 62 --ATVLSGSHDRTVRFWDLRTRGCT 84
+++GS D T+ W L
Sbjct: 107 NIKYIVTGSRDNTLHVWKLPKESSV 131
Score = 26.4 bits (56), Expect = 0.64
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 49 HSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGC 83
H+ + +L + ++LR+
Sbjct: 281 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKL 315
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 40.6 bits (93), Expect = 6e-06
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 5 TVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQA---------LSGHSGHVLS 55
+ + + I GA D KI V D +A L HSG V
Sbjct: 213 VLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 272
Query: 56 LYNWGGATVLSGSHDRTVRFWD 77
L + ++S SHD T+ WD
Sbjct: 273 L-QFDEFQIVSSSHDDTILIWD 293
Score = 39.4 bits (90), Expect = 1e-05
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 41 QAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
Q S S V L + ++SG D T++ WD T C +LT
Sbjct: 6 QRIHCRSETSKGVYCL-QYDDQKIVSGLRDNTIKIWDKNTLECKRILT 52
Score = 33.7 bits (75), Expect = 0.002
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 27 AGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGC 83
+GD I V + +T + + L+GH + + V+SGS D T+R WD+ C
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIAC-LQYRDRLVVSGSSDNTIRLWDIECGAC 210
Score = 27.9 bits (60), Expect = 0.15
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 2 HDGTVRDV-CFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLS 55
T + V C D ++SG D I + D T + + L+GH+G VL
Sbjct: 11 RSETSKGVYCLQYD----DQKIVSGLR-DNTIKIWDKNTLECKRILTGHTGSVLC 60
Score = 27.1 bits (58), Expect = 0.28
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 19 SSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDL 78
L+ G+ D I + D G + L GH ++ + ++SG++D ++ WDL
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE-ELVRCIRFDNKRIVSGAYDGKIKVWDL 245
Query: 79 RT 80
Sbjct: 246 VA 247
Score = 22.9 bits (47), Expect = 9.3
Identities = 9/61 (14%), Positives = 23/61 (37%)
Query: 28 GDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVL 87
++ T + + +++ ++ ++S S DRT++ W+ T L
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174
Query: 88 T 88
Sbjct: 175 N 175
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 39.9 bits (91), Expect = 9e-06
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 1 MHDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHV----LSL 56
D + S + GA D I V D T + Q + + + +
Sbjct: 245 EDDQEPVQGGIFALSWLDSQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 303
Query: 57 YNWGGATVLSGSHDRTVRFWDL 78
G ++S S D T+ F++L
Sbjct: 304 VATGNGRIISLSLDGTLNFYEL 325
Score = 31.0 bits (68), Expect = 0.013
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 57 YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
+ D T+R WD+ T C T
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290
Score = 24.9 bits (52), Expect = 1.7
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 16 SNKSSLLISGGAGDCKIYVTD--CATGQAFQALSGHSGHVLSLYNW----GGATVLSGSH 69
++ + + D + +GH V++ + G + SG
Sbjct: 26 DPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE 85
Query: 70 DRTVRFWDLRTRGCTNVL 87
V W +N +
Sbjct: 86 SGKVIVWGWTFDKESNSV 103
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
{Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 38.8 bits (88), Expect = 2e-05
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 40 GQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
G Q GH+ + +L + G T+ S + + WD+ T V
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 51
Score = 35.3 bits (79), Expect = 4e-04
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS-GHSGHVLSLYNWG 60
H+ + + S L S A + I D +TG + + H+ + +
Sbjct: 11 HNKAITALSS----SADGKTLFSADA-EGHINSWDISTGISNRVFPDVHATMITGIKTTS 65
Query: 61 GATVLSGSHDRTVRFWDLRTRGC 83
+ + S D ++ G
Sbjct: 66 KGDLFTVSWDDHLKVVPAGGSGV 88
Score = 35.0 bits (78), Expect = 5e-04
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 26 GAGDCKIYVTDCATGQAFQALSGHSGH---VLSLYNWGGATVLSGSHDRTVRFWDL 78
G+ D + V + + + V S+ T++S D ++FW++
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
Score = 25.3 bits (53), Expect = 1.1
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 66 SGSHDRTVRFWDLRTRGCTNVLT 88
+GS D +V W++ ++
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIII 263
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 38.8 bits (88), Expect = 2e-05
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 26 GAGDCKIYVTDCAT-GQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWD 77
G+ D I++ + +AL+ H V +L +T++S D ++ W+
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285
Score = 31.9 bits (70), Expect = 0.007
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 39 TGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGC 83
+ + +SGH+ + +L ++SGS+D + W +
Sbjct: 2 HDEVLKTISGHNKGITALTV---NPLISGSYDGRIMEWSSSSMHQ 43
Score = 26.1 bits (55), Expect = 0.77
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 49 HSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRG 82
+ + V +GS D + + ++
Sbjct: 215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 248
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 38.7 bits (88), Expect = 3e-05
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 41 QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL 87
Q Q ++ + + +L S D ++ + + L
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL 49
Score = 26.0 bits (55), Expect = 0.75
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 41 QAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL 87
+ + + V S+ ++ + + D + W+L+TR
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 38.3 bits (87), Expect = 3e-05
Identities = 8/87 (9%), Positives = 24/87 (27%), Gaps = 7/87 (8%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWG 60
+ ++ + + G + D T + ++ ++ L +
Sbjct: 272 LESSILIYSVPVH--GEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSAD 325
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVL 87
TV+ D + + L +
Sbjct: 326 RKTVMVRKDDGKIYTFPLEKPEDERTV 352
Score = 26.4 bits (56), Expect = 0.61
Identities = 8/56 (14%), Positives = 17/56 (30%)
Query: 29 DCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCT 84
I+V D + F A + +S ++ + S+ D +
Sbjct: 158 MQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS 213
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 37.5 bits (85), Expect = 7e-05
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 6 VRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATV 64
+ + +++ + I + IY L H+G V + + +
Sbjct: 10 ISCHAW---NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI 66
Query: 65 LSGSHDRTVRFWD 77
++ DR W
Sbjct: 67 VTCGTDRNAYVWT 79
Score = 28.7 bits (62), Expect = 0.092
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 47 SGHSGHVLSL-----YNWGGATVLSGSHDRTVRFWDLRT 80
S H V + + + D + WD+R+
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
Score = 27.1 bits (58), Expect = 0.33
Identities = 2/28 (7%), Positives = 7/28 (25%)
Query: 61 GATVLSGSHDRTVRFWDLRTRGCTNVLT 88
+ ++ V ++ V
Sbjct: 19 RTQIAICPNNHEVHIYEKSGNKWVQVHE 46
Score = 25.6 bits (54), Expect = 1.2
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQA 42
H +V + + K S + G D + + D + ++
Sbjct: 324 HKNSVSQISVLSGGKAKCSQFCTTGM-DGGMSIWDVRSLES 363
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 36.1 bits (82), Expect = 2e-04
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 9/95 (9%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGH---------SGH 52
DG+ D + L + AG + +V+ G G SG
Sbjct: 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGS 77
Query: 53 VLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVL 87
+L + A G V +D T +
Sbjct: 78 DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI 112
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 34.4 bits (77), Expect = 9e-04
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 31 KIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
K+++ G+ H + S+ + + +S S D ++ WD + N
Sbjct: 1 KVFIATANAGK------AHDADIFSV-SACNSFTVSCSGDGYLKVWDNKLLDNENPKD 51
Score = 34.1 bits (76), Expect = 0.001
Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 21/101 (20%)
Query: 2 HDGTVRDVCFIEDTSNKSSLLISGGAGDCKIYVTDCATGQAFQALS------GHSGHV-- 53
HD + V +S +S GD + V D H +
Sbjct: 13 HDADIFSVSA------CNSFTVSCS-GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65
Query: 54 ------LSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
+ + V + S + F+ + T +
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVI 106
Score = 28.3 bits (61), Expect = 0.13
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 57 YNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
+N G T+ S D +RFWD++T+ L
Sbjct: 297 FNDSGETLCSAGWDGKLRFWDVKTKERITTLN 328
Score = 26.4 bits (56), Expect = 0.51
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 26 GAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLR 79
D K+ D T + L+ H + + A G +D++
Sbjct: 307 AGWDGKLRFWDVKTKERITTLNMHCDDI-EIEEDILAVDEHGDSLAEPGVFDVK 359
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 31.1 bits (69), Expect = 0.012
Identities = 11/74 (14%), Positives = 24/74 (32%)
Query: 15 TSNKSSLLISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVR 74
+ +L +I + D + + + + +S + G +L D +
Sbjct: 27 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARID 86
Query: 75 FWDLRTRGCTNVLT 88
DL + T V
Sbjct: 87 MIDLWAKEPTKVAE 100
Score = 24.5 bits (52), Expect = 2.6
Identities = 3/37 (8%), Positives = 11/37 (29%)
Query: 52 HVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVLT 88
L+ + ++ + D ++ V+
Sbjct: 23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID 59
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 30.5 bits (67), Expect = 0.017
Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 29 DCKIYVTDCATGQAFQALSGHSGHVLSL-YNWGGATVLSGSHDRTVRFWDLRTRGCTNVL 87
+ D + + + S+ + G+TV G + +D T +
Sbjct: 259 YNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317
Query: 88 T 88
Sbjct: 318 D 318
Score = 24.4 bits (51), Expect = 2.7
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 26 GAGDCKIYVTDCATGQAFQ--ALSGHSGHVLSL-YNWGGATVL-SGSHDRTVRFWDLRT 80
A K+ V D + ++ + GG + + ++ DL T
Sbjct: 7 PARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT 65
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 30.1 bits (67), Expect = 0.028
Identities = 12/61 (19%), Positives = 20/61 (32%)
Query: 28 GDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVL 87
+I + D +T + L +S + G + D V DL + T V
Sbjct: 40 DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 99
Query: 88 T 88
Sbjct: 100 E 100
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 30.0 bits (66), Expect = 0.034
Identities = 8/65 (12%), Positives = 14/65 (21%), Gaps = 9/65 (13%)
Query: 33 YVTDCATGQAFQALSGHS---------GHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGC 83
YV D + + G + + G+ V D T
Sbjct: 1 YVYDADAKKLLGQIDGGFGPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDH 60
Query: 84 TNVLT 88
+
Sbjct: 61 AGEIV 65
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 29.5 bits (64), Expect = 0.051
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 26 GAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVL-SGSHDRTVRFWDLRTRGC 83
+ I V D + + + S + ++ + G V + +H V D T
Sbjct: 8 NSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66
Score = 27.1 bits (58), Expect = 0.32
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 30 CKIYVTDCATGQAFQALSGHSG-HVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVL 87
+ + D T + + +++ G ++ S TV D T T +
Sbjct: 224 NTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 29.0 bits (63), Expect = 0.074
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHS---------GHVLSLYNWGGATVLSGSHDRTV 73
+ A + +V D G+ + G G ++ + + + G V
Sbjct: 21 PAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYV 80
Query: 74 RFWDLRTRGCTNVL 87
+D T T +
Sbjct: 81 EVFDPVTLLPTADI 94
Score = 25.5 bits (54), Expect = 1.3
Identities = 8/70 (11%), Positives = 18/70 (25%), Gaps = 2/70 (2%)
Query: 23 ISGGAGDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVL--SGSHDRTVRFWDLRT 80
+ V D TG+ + +L + D+T+ D +
Sbjct: 273 WRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 332
Query: 81 RGCTNVLTPI 90
+ +
Sbjct: 333 GEELRSVNQL 342
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 28.2 bits (61), Expect = 0.13
Identities = 5/61 (8%), Positives = 18/61 (29%)
Query: 28 GDCKIYVTDCATGQAFQALSGHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRTRGCTNVL 87
++ D + +A + + ++ G + G + ++ T +
Sbjct: 270 VLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329
Query: 88 T 88
Sbjct: 330 K 330
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 24.5 bits (53), Expect = 2.4
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 48 GHSGHVLSLYNWGGATVLSGSHDRTVRFWDLRT 80
+ H L+ G + +G TV +
Sbjct: 257 PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289
>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]}
Length = 306
Score = 24.6 bits (53), Expect = 2.5
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 20 SLLISGGAGDCKIYVTDCATGQAFQ 44
S+ S G ++Y + A QA
Sbjct: 20 SMFKSNGIKSMRLYAPNQAALQAVG 44
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa
acuminata), 1,3-beta-glucanase [TaxId: 4641]}
Length = 312
Score = 24.2 bits (52), Expect = 2.9
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 20 SLLISGGAGDCKIYVTDCATGQAF 43
SL S ++Y + A QA
Sbjct: 20 SLYKSNNIARMRLYDPNQAALQAL 43
>d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain
{Chlamydomonas reinhardtii [TaxId: 3055]}
Length = 64
Score = 22.8 bits (49), Expect = 4.9
Identities = 3/30 (10%), Positives = 10/30 (33%)
Query: 4 GTVRDVCFIEDTSNKSSLLISGGAGDCKIY 33
G + + + + + I G+ +
Sbjct: 9 GKIVAITALSEKKGGFEVSIEKANGEVVVD 38
>d1pm3a_ b.41.1.2 (A:) MTH1895 {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 78
Score = 22.5 bits (48), Expect = 6.8
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 1 MHDGTVRDVCFIEDTSNKSSLLISGG 26
G V+DV ++ SL++ G
Sbjct: 19 KVIGKVKDVEVDIESQAIESLVLGKG 44
>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
vulgare), 1,3-beta-glucanase [TaxId: 4513]}
Length = 306
Score = 23.0 bits (49), Expect = 7.1
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 20 SLLISGGAGDCKIYVTDCATGQAF 43
L S G +IY D A
Sbjct: 20 QLYRSKGINGMRIYFADGQALSAL 43
>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing
endo-beta-galactosidase, GngC, C-terminal domain
{Clostridium perfringens [TaxId: 1502]}
Length = 131
Score = 22.7 bits (48), Expect = 8.3
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 38 ATGQAFQALSGHSGHVLSLYNWGGATVL 65
+ +G L++ N G
Sbjct: 42 YRDGYTLLKNNETGEYLNIENQTGYIEH 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.437
Gapped
Lambda K H
0.267 0.0426 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 345,825
Number of extensions: 12643
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 89
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)