BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14458
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 26/119 (21%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVD----PSGRL 62
D +C L+D+ + LQ+F H ADV LC+D +G
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADV----------------------LCLDLAPSETGNT 212
Query: 63 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG 121
VSG D +++D+R + +Q F+ H +DV S+R+ PS +G D L DL+
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA 271
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 22/121 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
VSG D +++D+R + +Q F+ H +DV S+ +Y PSG
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR--YY------------------PSG 252
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTA--DVRSIRFSPSAYYLLTGGYDNKLVLTD 118
SG +D++C LYD+R R + + + S+ FS S L G D + + D
Sbjct: 253 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 312
Query: 119 L 119
+
Sbjct: 313 V 313
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS--AYYLLTG 108
+SA S +++ D +C L+D+ + LQ+F H ADV + +PS ++G
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 109 GYDNKLVLTDLQ 120
G D K ++ D++
Sbjct: 217 GCDKKAMVWDMR 228
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 45 TRQGSPVSALCVD--PSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTAD-----VRSIR 97
T +G LC+D R +VS +D +++D T K H V +
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD-----SFTTNKEHAVTMPCTWVMACA 113
Query: 98 FSPSAYYLLTGGYDNK 113
++PS + GG DNK
Sbjct: 114 YAPSGCAIACGGLDNK 129
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+V+ D++C L+DI + TF HT DV S+ L P
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA--------------------PDT 196
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
RL VSG D+S L+D+R QTF H +D+ +I F P+ TG D L DL+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 121 G 121
Sbjct: 257 A 257
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 63 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT 122
+V+ D++C L+DI + TF HT DV S+ +P ++G D L D++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 123 M 123
M
Sbjct: 217 M 217
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
RL+VS +D +++D + + ++ V + ++PS Y+ GG DN + +L+
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+V+ D++C L+DI + TF HT DV S+ L P
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA--------------------PDT 196
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
RL VSG D+S L+D+R QTF H +D+ +I F P+ TG D L DL+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 121 G 121
Sbjct: 257 A 257
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 63 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT 122
+V+ D++C L+DI + TF HT DV S+ +P ++G D L D++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 123 M 123
M
Sbjct: 217 M 217
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
RL++S +D +++D + + ++ V + ++PS Y+ GG DN + +L+
Sbjct: 68 RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+V+ D++C L+DI + TF HT DV S+ L P
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA--------------------PDT 196
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
RL VSG D+S L+D+R QTF H +D+ +I F P+ TG D L DL+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 121 G 121
Sbjct: 257 A 257
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 63 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT 122
+V+ D++C L+DI + TF HT DV S+ +P ++G D L D++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 123 M 123
M
Sbjct: 217 M 217
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
RL+VS +D +++D + + ++ V + ++PS Y+ GG DN + +L+
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+V+ D++C L+DI + TF HT DV S+ L P
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA--------------------PDT 196
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
RL VSG D+S L+D+R QTF H +D+ +I F P+ TG D L DL+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 121 G 121
Sbjct: 257 A 257
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 63 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT 122
+V+ D++C L+DI + TF HT DV S+ +P ++G D L D++
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 123 M 123
M
Sbjct: 217 M 217
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
RL++S +D +++D + + ++ V + ++PS Y+ GG DN + +L+
Sbjct: 68 RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+V+ D++C L+DI + TF HT DV S+ L P
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA--------------------PDT 207
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
RL VSG D+S L+D+R QTF H +D+ +I F P+ TG D L DL+
Sbjct: 208 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267
Query: 121 G 121
Sbjct: 268 A 268
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 63 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT 122
+V+ D++C L+DI + TF HT DV S+ +P ++G D L D++
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Query: 123 M 123
M
Sbjct: 228 M 228
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
RL+VS +D +++D + + ++ V + ++PS Y+ GG DN + +L+
Sbjct: 79 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 138
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 25/126 (19%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKP-----HTADVRSIHLDHYTTEAGTRQGSPVSALC 55
+++G D +CVL+D+ + + F HTADV S+ ++
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL---------------- 216
Query: 56 VDPSGRLMVSGHEDSSCVLYDIR-GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKL 114
+ + +SG D++ L+D+R SR ++T+ H D+ S++F P TG D
Sbjct: 217 ---NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273
Query: 115 VLTDLQ 120
L D++
Sbjct: 274 RLFDMR 279
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 1 MVSGHEDSSCVLYDIR-GSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS 59
+SG D++ L+D+R SR ++T+ H D+ S+ P
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF--------------------PD 260
Query: 60 GRLMVSGHEDSSCVLYDIRGSRPLQTF--KPHTAD-----VRSIRFSPSAYYLLTGGYDN 112
G+ +G +D +C L+D+R LQ + +P D V S+ FS S LL GY N
Sbjct: 261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSN 319
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 58 PSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLT 117
P +VS +D ++++ S+ K H V F+P+ + GG D+ +
Sbjct: 76 PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135
Query: 118 DL 119
+L
Sbjct: 136 NL 137
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VSG D S ++D++ L+T H+ PVSA+ + G
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHS--------------------DPVSAVHFNRDG 164
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTF-KPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD 118
L+VS D C ++D + L+T V ++FSP+ Y+L DN L L D
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 122
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ L+T H+ V ++ F+ +++ YD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 38/73 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 111 DNKLVLTDLQGTM 123
D + + D++ M
Sbjct: 131 DESVRIWDVKTGM 143
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D+ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 216 DNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 258
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 259 SEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
VS + + +G VS D S L++++ + F HT DV S+ FSP +++GG
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 111 DNKLVLTDLQG 121
DN L + +++G
Sbjct: 130 DNALRVWNVKG 140
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 21/105 (20%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VSG D+ ++D+ R + K HT V S+ V P G
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV--------------------TVSPDG 208
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYL 105
L S +D L+D+ L A + I FSP+ Y++
Sbjct: 209 SLCASSDKDGVARLWDLTKGEALSEMAA-GAPINQICFSPNRYWM 252
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 25/143 (17%)
Query: 2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHL--DHYTTEAGTRQGS---------- 49
VS D S L++++ + F HT DV S+ D+ +G R +
Sbjct: 83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGEC 142
Query: 50 -----------PVSALCVDPS--GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI 96
VS + PS ++VSG D+ ++D+ R + K HT V S+
Sbjct: 143 MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Query: 97 RFSPSAYYLLTGGYDNKLVLTDL 119
SP + D L DL
Sbjct: 203 TVSPDGSLCASSDKDGVARLWDL 225
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
MVS ED++ ++D +T K HT V+ I DH SG
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH--------------------SG 162
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
+L+ S D + L+D +G ++T H +V S+ P+ ++++ D + + ++Q
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%)
Query: 49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTG 108
SPV+ + P +MVS ED++ ++D +T K HT V+ I F S L +
Sbjct: 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC 168
Query: 109 GYDNKLVLTDLQG 121
D + L D QG
Sbjct: 169 SADMTIKLWDFQG 181
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL 119
G ++SG D + ++D+ L T H VR + F ++L+ D L + D
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 120 Q 120
+
Sbjct: 368 K 368
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 45 TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYY 104
T G C+ RL+VSG D++ L+DI L+ + H VR IRF
Sbjct: 291 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-- 348
Query: 105 LLTGGYDNKLVLTDLQGTMRP 125
+++G YD K+ + DL + P
Sbjct: 349 IVSGAYDGKIKVWDLVAALDP 369
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 52 SALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
S LC+ R++++G DS+ ++D+ L T H V +RF+ ++T D
Sbjct: 175 SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKD 232
Query: 112 NKLVLTDL 119
+ + D+
Sbjct: 233 RSIAVWDM 240
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 27/117 (23%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQG------------ 48
+VSG D++ L+DI L+ + H VR I D+ +G G
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD 368
Query: 49 --SPVSALC----VDPSGRL---------MVSGHEDSSCVLYDIRGSRPLQTFKPHT 90
+P LC V+ SGR+ +VS D + +++D Q P +
Sbjct: 369 PRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQAEPPRS 425
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 39 YTTEAGTRQ------GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTAD 92
+ E+G ++ G + ++ P G+ + SG D ++DI + L T + H
Sbjct: 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 208
Query: 93 VRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
+RS+ FSP + L+T D + + D+Q
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 20/100 (20%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+ SG D ++DI + L T + H P+ +L P
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTLEGHAM--------------------PIRSLTFSPDS 218
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP 100
+L+V+ +D +YD++ + T H + V ++ F P
Sbjct: 219 QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 47 QGSPVSALCVDPSGRLMVSGHE--DSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYY 104
+G + + VD S L ++ D+ L+D+ + +++ D ++ FSP + Y
Sbjct: 77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 136
Query: 105 LLTGGYDNKL 114
L TG + K+
Sbjct: 137 LATGTHVGKV 146
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 20/138 (14%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQ------------- 47
++SG D + +++ + T HT+ VR +HL +G+R
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 231
Query: 48 -----GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA 102
G + CV GR +VSG D ++D L T + HT V S++F
Sbjct: 232 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG 289
Query: 103 YYLLTGGYDNKLVLTDLQ 120
++++G D + + D++
Sbjct: 290 IHVVSGSLDTSIRVWDVE 307
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 23/141 (16%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGT----------RQGSP 50
+VSG D ++D L T + HT V S+ D +G+ G+
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC 311
Query: 51 VSALC--------VDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK---PHTADVRSIRFS 99
+ L ++ ++VSG+ DS+ ++DI+ + LQT + H + V ++F+
Sbjct: 312 IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 371
Query: 100 PSAYYLLTGGYDNKLVLTDLQ 120
+ +++T D + L DL+
Sbjct: 372 KN--FVITSSDDGTVKLWDLK 390
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+ ++C P G+ + +G ED ++DI + + + H D+ S+ + PS L++G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 111 DNKLVLTDLQ 120
D + + DL+
Sbjct: 186 DRTVRIWDLR 195
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 122
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 131 DESVRIWDVK 140
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 258
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 178 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 237
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 238 ANFSVTGGKWIVSGSEDNLVYIWNLQ 263
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 115
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 166
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 124 DESVRIWDVK 133
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 209 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 251
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 252 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 297
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 125
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 134 DESVRIWDVK 143
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 261
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 307
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 240
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 241 ANFSVTGGKWIVSGSEDNLVYIWNLQ 266
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 118
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 169
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 127 DESVRIWDVK 136
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 212 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 254
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 255 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 300
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 242 ANFSVTGGKWIVSGSEDNLVYIWNLQ 267
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 119
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 128 DESVRIWDVK 137
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 255
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 301
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 125
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 134 DESVRIWDVK 143
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 261
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 307
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 125
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 134 DESVRIWDVK 143
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 261
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 307
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 122
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 131 DESVRIWDVK 140
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 258
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 122
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 131 DESVRIWDVK 140
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 258
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 242 ANFSVTGGKWIVSGSEDNLVYIWNLQ 267
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 119
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 128 DESVRIWDVK 137
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 255
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 301
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 199 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 258
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 259 ANFSVTGGKWIVSGSEDNLVYIWNLQ 284
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 136
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 187
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 145 DESVRIWDVK 154
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 230 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 272
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 273 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 318
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 206 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 265
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 266 ANFSVTGGKWIVSGSEDNLVYIWNLQ 291
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 143
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 194
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 152 DESVRIWDVK 161
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 279
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 280 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 325
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 204 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 263
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 264 ANFSVTGGKWIVSGSEDNLVYIWNLQ 289
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 141
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 150 DESVRIWDVK 159
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 277
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 323
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 183 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 242
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 243 ANFSVTGGKWIVSGSEDNLVYIWNLQ 268
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 120
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 171
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 129 DESVRIWDVK 138
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 214 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 256
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 257 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 302
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ + L+T H+ V ++H + + T +G
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 187 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 246
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 247 ANFSVTGGKWIVSGSEDNLVYIWNLQ 272
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 124
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ + L+T H+ V ++ F+ +++ YD
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 175
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 111 DNKLVLTDLQ 120
D + + D++
Sbjct: 133 DESVRIWDVK 142
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 218 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 260
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 261 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 306
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQG------------ 48
+ G + L+D++ + L+ H+A V S+ + Y +G+R G
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 141
Query: 49 ---------SPVSALCVDPSGRLMVSGHEDSSCVLYDIR----GSRPLQTFKPHTADVRS 95
V L P GR + SG D+ ++ G PLQTF H V++
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201
Query: 96 IRFSP-SAYYLLTGG 109
+ + P + L TGG
Sbjct: 202 VAWCPWQSNVLATGG 216
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLT 107
G +S++ G + G + L+D++ + L+ H+A V S+ ++ Y+L+
Sbjct: 67 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILS 123
Query: 108 GG 109
G
Sbjct: 124 SG 125
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH----------------YTTEAG 44
+VSG D S ++D++ L+T H+ V ++H + + T +G
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 45 T-------RQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI- 96
PVS + P+G+ +++ D++ L+D + L+T+ H + I
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 97 -RFSPS-AYYLLTGGYDNKLVLTDLQ 120
FS + ++++G DN + + +LQ
Sbjct: 245 ANFSVTGGKWIVSGSEDNMVYIWNLQ 270
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 20/111 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VS +D + ++D+ + L+T K H+ V + + P
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN--------------------PQS 122
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYD 111
L+VSG D S ++D++ L+T H+ V ++ F+ +++ YD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 38/73 (52%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+S + L+VS +D + ++D+ + L+T K H+ V F+P + +++G +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 111 DNKLVLTDLQGTM 123
D + + D++ M
Sbjct: 131 DESVRIWDVKTGM 143
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
D++ L+D + L+T+ H + I + T G+ +VSG
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT-----------------GGKWIVSG 258
Query: 67 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
ED+ +++++ +Q + HT V S P+ + + +N
Sbjct: 259 SEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 22/120 (18%)
Query: 12 LYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQG---------------------SP 50
+YD+ L+T H A V + + + +G+R G S
Sbjct: 160 IYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE 219
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLL-TGG 109
V L G + SG D+ ++D R S P T H A V+++ + P LL TGG
Sbjct: 220 VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG 279
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQG------------ 48
+ G + L+D++ + L+ H+A V S+ + Y +G+R G
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 221
Query: 49 ---------SPVSALCVDPSGRLMVSGHEDSSCVLYDIR----GSRPLQTFKPHTADVRS 95
V L P GR + SG D+ ++ G PLQTF H V++
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 96 IRFSP-SAYYLLTGG 109
+ + P + L TGG
Sbjct: 282 VAWCPWQSNVLATGG 296
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQG------------ 48
+ G + L+D++ + L+ H+A V S+ + Y +G+R G
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 232
Query: 49 ---------SPVSALCVDPSGRLMVSGHEDSSCVLYDIR----GSRPLQTFKPHTADVRS 95
V L P GR + SG D+ ++ G PLQTF H V++
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 96 IRFSP-SAYYLLTGG 109
+ + P + L TGG
Sbjct: 293 VAWCPWQSNVLATGG 307
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 85 TFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTMRP 125
TFK H ++V + SP+ Y+ TGG D KL++ D+ P
Sbjct: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 15/125 (12%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFK-PHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS 59
++SG D + +++ + F PH A H VS L +
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF--------------VSDLALSQE 87
Query: 60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL 119
+S D + L+D+R + F H ++V S+ FSP +L+ G + ++ L ++
Sbjct: 88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Query: 120 QGTMR 124
G +
Sbjct: 148 LGECK 152
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 9 SCVLYD--IRGSRPLQTFKPHTADV-RSIHLDHYTTEAGTR-----QGSPVSALCVDPSG 60
SCV Y ++ + +Q F P+ A V L + T R S V+ L + P+G
Sbjct: 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNG 225
Query: 61 RLMVSGHEDSSCVLYDIRG-SRPLQTFKPHTADVRSIRFSPSAYYLLTG 108
+ + +G +D +++DI + P + F + + I F+P ++ G
Sbjct: 226 KYIATGGKDKKLLIWDILNLTYPQREFDAGST-INQIAFNPKLQWVAVG 273
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 23/144 (15%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHL-----------DHYTTEAGTRQG- 48
+ S +D + L++ R + LQT H++ V + D T + R G
Sbjct: 400 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ 458
Query: 49 ---------SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS 99
S V + P G+ + S +D + L++ R + LQT H++ VR + FS
Sbjct: 459 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 517
Query: 100 PSAYYLLTGGYDNKLVLTDLQGTM 123
P + + D + L + G +
Sbjct: 518 PDGQTIASASDDKTVKLWNRNGQL 541
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 23/144 (15%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHL-----------DHYTTEAGTRQG- 48
+ S +D + L++ R + LQT H++ VR + D T + R G
Sbjct: 359 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 417
Query: 49 ---------SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS 99
S V + P + + S +D + L++ R + LQT H++ VR + FS
Sbjct: 418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 476
Query: 100 PSAYYLLTGGYDNKLVLTDLQGTM 123
P + + D + L + G +
Sbjct: 477 PDGQTIASASDDKTVKLWNRNGQL 500
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 23/144 (15%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHL-----------DHYTTEAGTRQG- 48
+ S +D + L++ R + LQT H++ V + D T + R G
Sbjct: 113 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 171
Query: 49 ---------SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS 99
S V + P G+ + S +D + L++ R + LQT H++ VR + FS
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 230
Query: 100 PSAYYLLTGGYDNKLVLTDLQGTM 123
P + + D + L + G +
Sbjct: 231 PDGQTIASASDDKTVKLWNRNGQL 254
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 23/144 (15%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHL-----------DHYTTEAGTRQG- 48
+ S +D + L++ R + LQT H++ V + D T + R G
Sbjct: 277 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 335
Query: 49 ---------SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS 99
S V + P G+ + S +D + L++ R + LQT H++ VR + FS
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 394
Query: 100 PSAYYLLTGGYDNKLVLTDLQGTM 123
P + + D + L + G +
Sbjct: 395 PDGQTIASASDDKTVKLWNRNGQL 418
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 23/137 (16%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHL-----------DHYTTEAGTRQG- 48
+ S +D + L++ R + LQT H++ VR + D T + R G
Sbjct: 441 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 499
Query: 49 ---------SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS 99
S V + P G+ + S +D + L++ R + LQT H++ V + FS
Sbjct: 500 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS 558
Query: 100 PSAYYLLTGGYDNKLVL 116
P + + D + L
Sbjct: 559 PDGQTIASASSDKTVKL 575
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 45 TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYY 104
T S V + P G+ + S +D + L++ R + LQT H++ VR + FSP
Sbjct: 54 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT 112
Query: 105 LLTGGYDNKLVLTDLQGTM 123
+ + D + L + G +
Sbjct: 113 IASASDDKTVKLWNRNGQL 131
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 23/144 (15%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHL-----------DHYTTEAGTRQG- 48
+ S +D + L++ R + LQT H++ V + D T + R G
Sbjct: 154 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 212
Query: 49 ---------SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS 99
S V + P G+ + S +D + L++ R + LQT H++ V + F
Sbjct: 213 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFR 271
Query: 100 PSAYYLLTGGYDNKLVLTDLQGTM 123
P + + D + L + G +
Sbjct: 272 PDGQTIASASDDKTVKLWNRNGQL 295
Score = 33.5 bits (75), Expect = 0.035, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 47 QGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLL 106
S V + P G+ + S +D + L++ R + LQT H++ V + FSP +
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 107 TGGYDNKLVLTDLQGTM 123
+ D + L + G +
Sbjct: 74 SASDDKTVKLWNRNGQL 90
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 24/119 (20%)
Query: 6 EDSSCVLYDIRG---SRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRL 62
+D +++D R S+P T HTA+V + + Y S +
Sbjct: 252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY-------------------SEFI 292
Query: 63 MVSGHEDSSCVLYDIRGSR-PLQTFKPHTADVRSIRFSPSAYYLL-TGGYDNKLVLTDL 119
+ +G D + L+D+R + L +F+ H ++ +++SP +L + G D +L + DL
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 34/133 (25%)
Query: 1 MVSGHEDSSCVLYDIRGS-------RPLQTFKPHTADVRSI--HLDHYTTEAGTRQGSPV 51
++S +D + L+DI + F HTA V + HL H +
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES----------- 245
Query: 52 SALCVDPSGRLMVSGHEDSSCVLYDIRG---SRPLQTFKPHTADVRSIRFSP-SAYYLLT 107
L S +D +++D R S+P T HTA+V + F+P S + L T
Sbjct: 246 ----------LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 108 GGYDNKLVLTDLQ 120
G D + L DL+
Sbjct: 296 GSADKTVALWDLR 308
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 24/119 (20%)
Query: 6 EDSSCVLYDIRG---SRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRL 62
+D +++D R S+P T HTA+V + + Y S +
Sbjct: 254 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY-------------------SEFI 294
Query: 63 MVSGHEDSSCVLYDIRGSR-PLQTFKPHTADVRSIRFSPSAYYLL-TGGYDNKLVLTDL 119
+ +G D + L+D+R + L +F+ H ++ +++SP +L + G D +L + DL
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 34/133 (25%)
Query: 1 MVSGHEDSSCVLYDIRGS-------RPLQTFKPHTADVRSI--HLDHYTTEAGTRQGSPV 51
++S +D + L+DI + F HTA V + HL H +
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES----------- 247
Query: 52 SALCVDPSGRLMVSGHEDSSCVLYDIRG---SRPLQTFKPHTADVRSIRFSP-SAYYLLT 107
L S +D +++D R S+P T HTA+V + F+P S + L T
Sbjct: 248 ----------LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 108 GGYDNKLVLTDLQ 120
G D + L DL+
Sbjct: 298 GSADKTVALWDLR 310
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 24/119 (20%)
Query: 6 EDSSCVLYDIRG---SRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRL 62
+D +++D R S+P T HTA+V + + Y S +
Sbjct: 256 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY-------------------SEFI 296
Query: 63 MVSGHEDSSCVLYDIRGSR-PLQTFKPHTADVRSIRFSPSAYYLL-TGGYDNKLVLTDL 119
+ +G D + L+D+R + L +F+ H ++ +++SP +L + G D +L + DL
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 34/133 (25%)
Query: 1 MVSGHEDSSCVLYDIRGS-------RPLQTFKPHTADVRSI--HLDHYTTEAGTRQGSPV 51
++S +D + L+DI + F HTA V + HL H +
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES----------- 249
Query: 52 SALCVDPSGRLMVSGHEDSSCVLYDIRG---SRPLQTFKPHTADVRSIRFSP-SAYYLLT 107
L S +D +++D R S+P T HTA+V + F+P S + L T
Sbjct: 250 ----------LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 108 GGYDNKLVLTDLQ 120
G D + L DL+
Sbjct: 300 GSADKTVALWDLR 312
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
VS + + G+ +SG D + L+D+ + F HT DV S+ FS +++G
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 111 DNKLVLTDLQGTMR 124
D + L + G +
Sbjct: 149 DKTIKLWNTLGVCK 162
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYL 105
++ + V P G L SG +D +L+D+ + L T + ++ FSP+ Y+L
Sbjct: 218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWL 271
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 25/144 (17%)
Query: 2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHL--DHYTTEAGTRQGS---------- 49
+SG D + L+D+ + F HT DV S+ D+ +G+R +
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161
Query: 50 -----------PVSALCVDP--SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI 96
VS + P S ++VS D ++++ + HT + ++
Sbjct: 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Query: 97 RFSPSAYYLLTGGYDNKLVLTDLQ 120
SP +GG D + +L DL
Sbjct: 222 TVSPDGSLCASGGKDGQAMLWDLN 245
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
VS + + G+ +SG D + L+D+ + F HT DV S+ FS +++G
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 111 DNKLVLTDLQGTMR 124
D + L + G +
Sbjct: 126 DKTIKLWNTLGVCK 139
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYL 105
++ + V P G L SG +D +L+D+ + L T + ++ FSP+ Y+L
Sbjct: 195 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWL 248
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 25/144 (17%)
Query: 2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHL--DHYTTEAGTRQGS---------- 49
+SG D + L+D+ + F HT DV S+ D+ +G+R +
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 138
Query: 50 -----------PVSALCVDP--SGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI 96
VS + P S ++VS D ++++ + HT + ++
Sbjct: 139 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Query: 97 RFSPSAYYLLTGGYDNKLVLTDLQ 120
SP +GG D + +L DL
Sbjct: 199 TVSPDGSLCASGGKDGQAMLWDLN 222
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 53 ALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
AL + P ++ S D + ++D+ ++ F+ HT I S L TGG DN
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205
Query: 113 KLVLTDLQ 120
+ DL+
Sbjct: 206 TVRSWDLR 213
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYL 105
VS + V P G L SG +D +L+D+ + L + + ++ + ++ FSP+ Y+L
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWL 617
Score = 32.0 bits (71), Expect = 0.095, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 27/145 (18%)
Query: 2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI--HLDH--------------------- 38
+SG D L+D+ + F HT DV S+ LD+
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505
Query: 39 -YT-TEAGTRQGSPVSALCVDPSG--RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVR 94
YT +E G VS + P+ +VS D + ++++ + T HT V
Sbjct: 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVS 565
Query: 95 SIRFSPSAYYLLTGGYDNKLVLTDL 119
++ SP +GG D ++L DL
Sbjct: 566 TVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
V + + G+ +SG D L+D+ + F HT DV S+ FS +++
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 111 DNKLVLTDLQG 121
D + L + G
Sbjct: 493 DRTIKLWNTLG 503
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 22/99 (22%)
Query: 8 SSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGH 67
S+ V Y + G R L T HT + SI +D +T + V+G
Sbjct: 55 SASVWYSLNGER-LGTLDGHTGTIWSIDVDCFT--------------------KYCVTGS 93
Query: 68 EDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLL 106
D S L+D+ + + T+K V+ + FSP Y L
Sbjct: 94 ADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFL 131
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 60 GRLMVSGHEDSSCVLYDIRGSRP-LQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD 118
G+ +++GH+D YD+ + + + H + ++FSP Y +T D L D
Sbjct: 187 GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246
Query: 119 L 119
+
Sbjct: 247 V 247
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 50 PVSALCVDPSGRLMVSGHEDSSC-VLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTG 108
P++ + + G L+ S +DSS V Y + G R L T HT + SI Y +TG
Sbjct: 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-LGTLDGHTGTIWSIDVDCFTKYCVTG 92
Query: 109 GYDNKLVLTDL 119
D + L D+
Sbjct: 93 SADYSIKLWDV 103
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 68 EDSSCVLYDIRG---SRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQ 120
+D +++D R S+P + HTA+V + F+P S + L TG D + L DL+
Sbjct: 248 DDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 304
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 68 EDSSCVLYDIRG---SRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQ 120
+D +++D R S+P HTA+V + F+P S + L TG D + L DL+
Sbjct: 250 DDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.1 bits (74), Expect = 0.039, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 68 EDSSCVLYDIRG---SRPLQTFKPHTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQ 120
+D ++D R S+P HTA+V + F+P S + L TG D + L DL+
Sbjct: 250 DDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP-SAYYLLTGG 109
VS + V SG VSG +D ++D+ L +++ H A V + SP L+
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189
Query: 110 YDNKLVLTD 118
DN+++L D
Sbjct: 190 EDNRILLWD 198
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 32.7 bits (73), Expect = 0.052, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCV---D 57
+VSG D + ++DI+ F+ H + VR + + Y GS + L V
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 58 PSGRLMVSGHEDSSCVLYDIRGSRP--LQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLV 115
+ G E +++ P + + H A VR++ S +++G YDN L+
Sbjct: 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLI 293
Query: 116 LTDL 119
+ D+
Sbjct: 294 VWDV 297
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTE-----AGTRQGSPVSALC 55
+V+G D++ ++ + P ++ P + L +T E G +G S
Sbjct: 220 IVTGSRDNTLHVWKL----PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRT 275
Query: 56 VDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLV 115
V G ++VSG D++ +++D+ + L HT + S + ++ D +
Sbjct: 276 VSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIR 335
Query: 116 LTDLQ 120
+ DL+
Sbjct: 336 IWDLE 340
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS--PSAYYLLTGGYDNKL 114
G ++VSG D + ++DI+ F+ H + VR + + Y++TG DN L
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS---RPLQTFKPHTADVRSIRFSPSAYYL 105
+ V ++ PSG L+ + D S ++++ + HT DV+ + + PS L
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Query: 106 LTGGYDNKLVL 116
+ YD+ + L
Sbjct: 166 ASASYDDTVKL 176
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 32.7 bits (73), Expect = 0.054, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCV---D 57
+VSG D + ++DI+ F+ H + VR + + Y GS + L V
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 58 PSGRLMVSGHEDSSCVLYDIRGSRP--LQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLV 115
+ G E +++ P + + H A VR++ S +++G YDN L+
Sbjct: 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLI 293
Query: 116 LTDL 119
+ D+
Sbjct: 294 VWDV 297
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTE-----AGTRQGSPVSALC 55
+V+G D++ ++ + P ++ P + L +T E G +G S
Sbjct: 220 IVTGSRDNTLHVWKL----PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275
Query: 56 VDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLV 115
V G ++VSG D++ +++D+ + L HT + S + ++ D +
Sbjct: 276 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 335
Query: 116 LTDLQ 120
+ DL+
Sbjct: 336 IWDLE 340
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS--PSAYYLLTGGYDNKL 114
G ++VSG D + ++DI+ F+ H + VR + + Y++TG DN L
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGR 61
+S D + L+D+ Q F H +DV S+ +D
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--------------------IDKKAS 120
Query: 62 LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS 101
+++SG D + ++ I+G + L T H V +R P+
Sbjct: 121 MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPN 159
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL 119
G +S D + L+D+ Q F H +DV S+ A +++G D + + +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 120 QG 121
+G
Sbjct: 137 KG 138
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGR 61
+S D + L+D+ Q F H +DV S+ +D
Sbjct: 75 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--------------------IDKKAS 114
Query: 62 LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS 101
+++SG D + ++ I+G + L T H V +R P+
Sbjct: 115 MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPN 153
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL 119
G +S D + L+D+ Q F H +DV S+ A +++G D + + +
Sbjct: 71 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 130
Query: 120 QG 121
+G
Sbjct: 131 KG 132
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGR 61
+S D + L+D+ Q F H +DV S+ +D
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--------------------IDKKAS 120
Query: 62 LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS 101
+++SG D + ++ I+G + L T H V +R P+
Sbjct: 121 MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPN 159
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL 119
G +S D + L+D+ Q F H +DV S+ A +++G D + + +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 120 QG 121
+G
Sbjct: 137 KG 138
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGR 61
+S D + L+D+ Q F H +DV S+ +D
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--------------------IDKKAS 120
Query: 62 LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS 101
+++SG D + ++ I+G + L T H V +R P+
Sbjct: 121 MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPN 159
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL 119
G +S D + L+D+ Q F H +DV S+ A +++G D + + +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 120 QG 121
+G
Sbjct: 137 KG 138
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGR 61
+S D + L+D+ Q F H +DV S+ +D
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--------------------IDKKAS 120
Query: 62 LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS 101
+++SG D + ++ I+G + L T H V +R P+
Sbjct: 121 MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPN 159
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL 119
G +S D + L+D+ Q F H +DV S+ A +++G D + + +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 120 QG 121
+G
Sbjct: 137 KG 138
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 48 GSPVSALCVD--PSGRLMVS-GHEDSSCVLYDIR-GSRPLQTFKPHTADVRSIRFSPSA- 102
G V CVD P+ + +V+ G +D ++D+R G+ P+ K H A++ + F PS
Sbjct: 234 GDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNP 293
Query: 103 YYLLTGGYDNKLVLTD 118
+L T D L D
Sbjct: 294 EHLFTCSEDGSLWHWD 309
>pdb|1EGY|A Chain A, Cytochrome P450eryf With 9-Aminophenanthrene Bound
pdb|1EUP|A Chain A, X-Ray Crystal Structure Of Cytochrome P450eryf With
Androstendione Bound
pdb|1JIN|A Chain A, P450eryfKETOCONAZOLE
pdb|1OXA|A Chain A, Cytochrome P450 (Donor:o2 Oxidoreductase)
Length = 403
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 33 SIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS 80
S H+D Y+T A R+ +PV+ + +V+G++++ L D+R S
Sbjct: 10 SFHVDWYSTYAELRETAPVTPVRFLGQDAWLVTGYDEAKAALSDLRLS 57
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 45 TRQGSPVSALCVDPSGRL-MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY 103
T Q ++++ PS ++SG +D++ +++ + TF HT V S+R++P
Sbjct: 144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS 203
Query: 104 YLLTGGYDNKLVL 116
+ G D +VL
Sbjct: 204 LFASTGGDGTIVL 216
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPL---QTFKPHTADVRSIRFSPSAYYLLT 107
++++ +G +V+ + + Y + + L ++ HTA V + +SP L T
Sbjct: 494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 553
Query: 108 GGYDNKLVLTDL 119
G DN +++ ++
Sbjct: 554 GSLDNSVIVWNM 565
>pdb|1Z8Q|A Chain A, Ferrous Dioxygen Complex Of The A245t Cytochrome
P450eryf
Length = 404
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 33 SIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS 80
S H+D Y T A R+ +PV+ + +V+G++++ L D+R S
Sbjct: 11 SFHVDWYRTYAELRETAPVTPVRFLGQDAWLVTGYDEAKAALSDLRLS 58
>pdb|1Z8O|A Chain A, Ferrous Dioxygen Complex Of The Wild-Type Cytochrome
P450eryf
Length = 404
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 33 SIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS 80
S H+D Y T A R+ +PV+ + +V+G++++ L D+R S
Sbjct: 11 SFHVDWYRTYAELRETAPVTPVRFLGQDAWLVTGYDEAKAALSDLRLS 58
>pdb|1JIO|A Chain A, P450eryf/6deb
Length = 403
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 33 SIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS 80
S H+D Y T A R+ +PV+ + +V+G++++ L D+R S
Sbjct: 10 SFHVDWYRTYAELRETAPVTPVRFLGQDAWLVTGYDEAKAALSDLRLS 57
>pdb|1JIP|A Chain A, P450eryf(A245s)KETOCONAZOLE
Length = 403
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 33 SIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS 80
S H+D Y T A R+ +PV+ + +V+G++++ L D+R S
Sbjct: 10 SFHVDWYRTYAELRETAPVTPVRFLGQDAWLVTGYDEAKAALSDLRLS 57
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 27/145 (18%)
Query: 2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH-----------YTTEAGTRQGSP 50
+S D + L+D+ Q F H +DV S+ +D T + T +G
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQC 140
Query: 51 VSALC----------------VDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVR 94
++ L D ++S D +++ + F H +++
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNIN 200
Query: 95 SIRFSPSAYYLLTGGYDNKLVLTDL 119
++ SP + + G D ++ L +L
Sbjct: 201 TLTASPDGTLIASAGKDGEIXLWNL 225
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDL 119
G +S D + L+D+ Q F H +DV S+ A +++G D + + +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI 136
Query: 120 QG 121
+G
Sbjct: 137 KG 138
>pdb|1Z8P|A Chain A, Ferrous Dioxygen Complex Of The A245s Cytochrome
P450eryf
Length = 404
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 33 SIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGS 80
S H+D Y T A R+ +PV+ + +V+G++++ L D+R S
Sbjct: 11 SFHVDWYRTYAELRETAPVTPVRFLGQDAWLVTGYDEAKAALSDLRLS 58
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 34 IHLDHYTTEAGTRQ----GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPH 89
+ L +Y T+ R +PV A ++ G +D +++ + F+ H
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 90 TADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM 123
+RSI P+ Y+L+G D + L + +
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 34 IHLDHYTTEAGTRQ----GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPH 89
+ L +Y T+ R +PV A ++ G +D +++ + F+ H
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 90 TADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGTM 123
+RSI P+ Y+L+G D + L + +
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 23/57 (40%)
Query: 62 LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD 118
L+ +G D L+D+ T HT V RFSP L + D L L D
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 40 TTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFS 99
+ E G V+ LC P G++++S +++ QTF + +++ I S
Sbjct: 1175 SEEGAATHGGWVTDLCFSPDGKMLISA--GGYIKWWNVVTGESSQTFYTNGTNLKKIHVS 1232
Query: 100 PSAYYLLTGGYDNKLVLTDLQ 120
P +T DN +L LQ
Sbjct: 1233 PDFKTYVT--VDNLGILYILQ 1251
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
VS C+ P + G ED + + ++ +R + H VR I+F+ L++
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1030
Query: 111 DNKLVLTDLQ 120
D+ + + + Q
Sbjct: 1031 DSVIQVWNWQ 1040
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 62 LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
L+ +G D L+D+ T HT V RFSP L + D L L D++
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
VS C+ P + G ED + + ++ +R + H VR I+F+ L++
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1023
Query: 111 DNKLVLTDLQ 120
D+ + + + Q
Sbjct: 1024 DSVIQVWNWQ 1033
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 62 LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
L+ +G D L+D+ T HT V RFSP L + D L L D++
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 46 RQGSPVSALCVDPSGRLMVSGHEDSSCV----LYDIRGSRPLQTFKPHTADVRSIRFSPS 101
R SP SA+ + S + G E+ + + L D+ S L+T P A I SPS
Sbjct: 444 RLNSPGSAVSL--SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT--PLRAKPSYISISPS 499
Query: 102 AYYLLTGGYDNKLVLTDLQ 120
Y+ G K++L DLQ
Sbjct: 500 ETYIAAGDVXGKILLYDLQ 518
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 48 GSPVSALCVDP-SGRLMVSGHEDSSCVLYDIRGS 80
G ++ L ++P GR M+SG D VLYD+ S
Sbjct: 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENS 76
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 89 HTADVRSIRFSP-SAYYLLTGGYDNKLVLTDLQGTMR 124
H + ++ P Y+L+GG D +VL DL+ + R
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSR 78
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 30 DVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPH 89
+VRSI + TE R G ++ ++ G +D +++ + F+ H
Sbjct: 47 EVRSIQV----TETPVRAGKFIA------RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 90 TADVRSIRFSPSAYYLLTGGYD 111
+RSI P+ Y+L+G D
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDD 118
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 30 DVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPH 89
+VRSI + TE R G ++ ++ G +D +++ + F+ H
Sbjct: 47 EVRSIQV----TETPVRAGKFIA------RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 90 TADVRSIRFSPSAYYLLTGGYD 111
+RSI P+ Y+L+G D
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDD 118
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 46 RQGSPVSALCVDPSGRLMVSGHEDSSCV----LYDIRGSRPLQTFKPHTADVRSIRFSPS 101
R SP SA+ + S + G E+ + + L D+ S L+T P A I SPS
Sbjct: 444 RLNSPGSAVSL--SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT--PLRAKPSYISISPS 499
Query: 102 AYYLLTGGYDNKLVLTDLQ 120
Y+ G K++L DLQ
Sbjct: 500 ETYIAAGDVMGKILLYDLQ 518
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human)
Length = 470
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 102 AYYLLTGGYDNKLVLTDLQ 120
Y ++TGG DN L+L DL+
Sbjct: 336 GYKIVTGGSDNHLILVDLR 354
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 22 QTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLM-VSGHEDSSCVLYDIRGS 80
+TFK T+ + H+ ++ GT + + ALC D + +M V+G S C + +RG
Sbjct: 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG---SDCKIDFVRG- 91
Query: 81 RPLQTF 86
PL F
Sbjct: 92 -PLTNF 96
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 103 YYLLTGGYDNKLVLTDLQ 120
Y L++GG DN LVL DL+
Sbjct: 356 YSLVSGGTDNHLVLVDLR 373
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVU|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVY|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RVY|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 102 AYYLLTGGYDNKLVLTDLQ 120
Y ++TGG DN L+L DL+
Sbjct: 345 GYKIVTGGSDNHLILVDLR 363
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RV4|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV4|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV3|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 102 AYYLLTGGYDNKLVLTDLQ 120
Y ++TGG DN L+L DL+
Sbjct: 345 GYKIVTGGSDNHLILVDLR 363
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|D Chain D, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|A Chain A, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|C Chain C, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
Length = 483
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 102 AYYLLTGGYDNKLVLTDLQ 120
Y ++TGG DN L+L DL+
Sbjct: 345 GYKIVTGGSDNHLILVDLR 363
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 102 AYYLLTGGYDNKLVLTDLQ 120
Y ++TGG DN L+L DL+
Sbjct: 332 GYKIVTGGSDNHLILVDLR 350
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 102 AYYLLTGGYDNKLVLTDLQ 120
Y ++TGG DN L+L DL+
Sbjct: 340 GYKIVTGGSDNHLILXDLR 358
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIR-GSRPLQTFKPHTADVRSIRFSPSAYYLLT 107
S ++ L PSG ++S +D ++ ++ GS P +T H A V I +L+
Sbjct: 137 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP-RTLIGHRATVTDIAIIDRGRNVLS 195
Query: 108 GGYDNKLVL 116
D + L
Sbjct: 196 ASLDGTIRL 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,928,700
Number of Sequences: 62578
Number of extensions: 151292
Number of successful extensions: 708
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 273
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)