RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14458
(125 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 82.9 bits (203), Expect = 1e-20
Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 24/142 (16%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLD----------------------- 37
VSG D+S L+D+R QTF H +D+ +I
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 38 -HYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI 96
T + ++++ SGRL+++G++D +C ++D + H V +
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
Query: 97 RFSPSAYYLLTGGYDNKLVLTD 118
+ + TG +D+ L + +
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
Score = 55.1 bits (131), Expect = 1e-10
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 50 PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGG 109
V +L + P RL VSG D+S L+D+R QTF H +D+ +I F P+ TG
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 110 YDNKLVL 116
D L
Sbjct: 246 DDATCRL 252
Score = 38.6 bits (88), Expect = 6e-05
Identities = 11/57 (19%), Positives = 27/57 (47%)
Query: 49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYL 105
+ + A+ RL+VS +D +++D + + ++ V + ++PS Y+
Sbjct: 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Score = 38.6 bits (88), Expect = 7e-05
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKL 114
R +T + H A + ++ + + L++ D KL
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL 79
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 71.7 bits (174), Expect = 1e-16
Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
++SG D + ++D+ L T H + V + G
Sbjct: 220 LLSGSRDKTIKMWDVSTGMCLMTLVGHD--------------------NWVRGVLFHSGG 259
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTD 118
+ ++S +D + ++D + R ++T H V S+ F +A Y++TG D + + +
Sbjct: 260 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 68.6 bits (166), Expect = 2e-15
Identities = 20/120 (16%), Positives = 43/120 (35%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+ S D + ++ + + H V I ++ + + + G
Sbjct: 158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 217
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
++SG D + ++D+ L T H VR + F ++L+ D L + D +
Sbjct: 218 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277
Score = 47.0 bits (110), Expect = 7e-08
Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 22/142 (15%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGS----------- 49
MVS ED++ ++D +T K HT V+ I DH +
Sbjct: 32 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 91
Query: 50 -----------PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRF 98
VS++ + P+G +VS D + +++++ ++TF H VR +R
Sbjct: 92 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 151
Query: 99 SPSAYYLLTGGYDNKLVLTDLQ 120
+ + + D + + +
Sbjct: 152 NQDGTLIASCSNDQTVRVWVVA 173
Score = 45.5 bits (106), Expect = 2e-07
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYY 104
SPV+ + P +MVS ED++ ++D +T K HT V+ I F S
Sbjct: 18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Score = 39.7 bits (91), Expect = 3e-05
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 77 IRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
I H + V + F P +++ D + + D +
Sbjct: 4 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE 47
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 61.4 bits (147), Expect = 7e-13
Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 14/126 (11%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VSG D S L++++ + K + + + V ++ +
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK--------DFVLSVATTQND 320
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSI------RFSPSAYYLLTGGYDNKL 114
++SG +D + +D + PL + H V S+ P TG D K
Sbjct: 321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380
Query: 115 VLTDLQ 120
+ +
Sbjct: 381 RIWKYK 386
Score = 49.4 bits (116), Expect = 1e-08
Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+ +G D + ++D ++ E+GT V ++ G
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSEN-------------ESGTGHKDSVYSVVFTRDG 266
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQ------------TFKPHTADVRSIRFSPSAYYLLTG 108
+ +VSG D S L++++ + T+ H V S+ + + Y+L+G
Sbjct: 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 326
Query: 109 GYDNKLVLTDLQ 120
D ++ D +
Sbjct: 327 SKDRGVLFWDKK 338
Score = 41.3 bits (95), Expect = 9e-06
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 55 CVDPSGRLMVSGHEDSSCVLYDIRGSR-------PLQTFKPHTADVRSIRFSPSAYYLLT 107
G+ + +G D + ++D ++ H V S+ F+ +++
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271
Query: 108 GGYDNKLVLTDLQG 121
G D + L +LQ
Sbjct: 272 GSLDRSVKLWNLQN 285
Score = 35.5 bits (80), Expect = 8e-04
Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 24/112 (21%)
Query: 17 GSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYD 76
+ + P + L H + + S V + G + +G + + +Y
Sbjct: 36 TNDYYILYNPALPREIDVEL-HKSLD----HTSVVCCVKFSNDGEYLATGC-NKTTQVYR 89
Query: 77 IRGSRPLQTFKP------------------HTADVRSIRFSPSAYYLLTGGY 110
+ + +RS+ FSP +L TG
Sbjct: 90 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 141
Score = 34.4 bits (77), Expect = 0.002
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 49 SPVSALCVDPSGRLM---VSGHEDSSCVLYDIRGSR----PLQTFKPHTADVRSIRFSPS 101
P+ +D + + + + +LY+ R L HT+ V ++FS
Sbjct: 14 KPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND 73
Query: 102 AYYLLTGGYDN 112
YL TG
Sbjct: 74 GEYLATGCNKT 84
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 60.3 bits (144), Expect = 2e-12
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 50 PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRP--LQTFKPHTADVRSIRFSPSAYYLLT 107
P+S + + + +Y+ G++ + K H V + ++P + ++T
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 108 GGYDNKLVLTD 118
G D +
Sbjct: 69 CGTDRNAYVWT 79
Score = 35.2 bits (79), Expect = 0.001
Identities = 8/78 (10%), Positives = 22/78 (28%), Gaps = 22/78 (28%)
Query: 1 MVSGHEDSSCVLYDIRGSRP--LQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDP 58
+ + +Y+ G++ + K H V+ + P
Sbjct: 22 IAICPNNHEVHIYEKSGNKWVQVHELKEHN--------------------GQVTGVDWAP 61
Query: 59 SGRLMVSGHEDSSCVLYD 76
+V+ D + ++
Sbjct: 62 DSNRIVTCGTDRNAYVWT 79
Score = 30.6 bits (67), Expect = 0.042
Identities = 16/124 (12%), Positives = 30/124 (24%), Gaps = 26/124 (20%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+ +GH D VL+ + +F + T +
Sbjct: 258 VAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD----------K 306
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP----SAYYLLTGGYDNKLVL 116
+ G + L + H V I T G D + +
Sbjct: 307 KASSEGSAAAGAGLDSL-----------HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI 355
Query: 117 TDLQ 120
D++
Sbjct: 356 WDVR 359
Score = 28.7 bits (62), Expect = 0.16
Identities = 1/29 (3%), Positives = 11/29 (37%)
Query: 93 VRSIRFSPSAYYLLTGGYDNKLVLTDLQG 121
+ ++ + ++++ + + G
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSG 38
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 55.2 bits (131), Expect = 1e-10
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 53 ALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
+L G+ VS +D+ + + K ++ V S S Y++TG D
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDK 328
Query: 113 KLVLTDL 119
K + ++
Sbjct: 329 KATVYEV 335
Score = 41.3 bits (95), Expect = 7e-06
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQT-----FKPHTADVRSIRFSPSA 102
G V A+ + R + +G ++DI +RS + P
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 103 YYLLTGGYDN 112
L+ GG +
Sbjct: 110 CTLIVGGEAS 119
Score = 38.3 bits (87), Expect = 8e-05
Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 21/77 (27%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
VS +D+ + + K S V + +
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSKES---------------------SSVLSCDISVDD 318
Query: 61 RLMVSGHEDSSCVLYDI 77
+ +V+G D +Y++
Sbjct: 319 KYIVTGSGDKKATVYEV 335
Score = 37.1 bits (84), Expect = 2e-04
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDI-RGSRPLQTFKPHTADVRSIRFSPSAYYLL 106
P + V G++ + + I R +R + T H V ++ S ++
Sbjct: 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVY 67
Query: 107 TGGYDNKLVLTDLQGTMRP 125
TGG + + D+
Sbjct: 68 TGG-KGCVKVWDISHPGNK 85
Score = 32.1 bits (71), Expect = 0.013
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 49 SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTG 108
S + +L P+G + G E S+ + + H + V S++F+ + ++
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVST 283
Query: 109 GYDNKLVLTDLQ 120
G DN L
Sbjct: 284 GKDNLLNAWRTP 295
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 54.1 bits (128), Expect = 3e-10
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 44 GTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAY 103
T +G+ V L P+G + + +S + + + H+ + SPS Y
Sbjct: 14 RTARGTAVV-LGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY 71
Query: 104 YLLTGGYDNKL 114
Y +G +
Sbjct: 72 YCASGDVHGNV 82
Score = 44.9 bits (104), Expect = 4e-07
Identities = 10/116 (8%), Positives = 31/116 (26%), Gaps = 1/116 (0%)
Query: 5 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMV 64
+ + D + + V L P G +
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254
Query: 65 SGHEDSSCVLYDIRGSRPLQTFKPHT-ADVRSIRFSPSAYYLLTGGYDNKLVLTDL 119
S D + ++++ + +T T + + + + L++ + + +
Sbjct: 255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
Score = 34.5 bits (77), Expect = 0.002
Identities = 7/77 (9%), Positives = 21/77 (27%), Gaps = 19/77 (24%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+ S D + ++++ + +T T L + +
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGT-------------------RIEDQQLGIIWTK 293
Query: 61 RLMVSGHEDSSCVLYDI 77
+ +VS + +
Sbjct: 294 QALVSISANGFINFVNP 310
Score = 29.1 bits (63), Expect = 0.13
Identities = 10/96 (10%), Positives = 20/96 (20%), Gaps = 22/96 (22%)
Query: 7 DSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSG 66
+S + + + H+ + PSG SG
Sbjct: 37 GTSVYTVPVGSLTDTEIYTEHS--------------------HQTTVAKTSPSGYYCASG 76
Query: 67 HEDSS--CVLYDIRGSRPLQTFKPHTADVRSIRFSP 100
+ T + V+ I +
Sbjct: 77 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 51.0 bits (120), Expect = 3e-09
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 21/86 (24%)
Query: 19 RPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR 78
+ + K H V + C+ G +VSG +D++ ++
Sbjct: 7 KSPKVLKGHDDHVIT---------------------CLQFCGNRIVSGSDDNTLKVWSAV 45
Query: 79 GSRPLQTFKPHTADVRSIRFSPSAYY 104
+ L+T HT V S + +
Sbjct: 46 TGKCLRTLVGHTGGVWSSQMRDNIII 71
Score = 49.4 bits (116), Expect = 1e-08
Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 30/153 (19%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGS----------- 49
+VSG D+S ++D+ + T H + + L +G +
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC 249
Query: 50 ----------PVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK-----PHTADVR 94
+ C+ + +++ +D + L+D++ ++ V
Sbjct: 250 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 309
Query: 95 SIRFSPSAYYLLTGGYDN----KLVLTDLQGTM 123
IR S + G + KL++ D M
Sbjct: 310 RIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 342
Score = 41.0 bits (94), Expect = 9e-06
Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 24/123 (19%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+VSG D ++D L T + HT V S+ D G
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD----------------------G 187
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
+VSG D+S ++D+ + T H + + + L++G D+ + + D++
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIK 245
Query: 121 GTM 123
Sbjct: 246 TGQ 248
Score = 34.0 bits (76), Expect = 0.002
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
+ + K H V + +++G DN L +
Sbjct: 7 KSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAV 45
Score = 33.6 bits (75), Expect = 0.004
Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 20/138 (14%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH------------------YTTE 42
+VSG +D++ ++ + L+T HT V S +
Sbjct: 30 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGEC 89
Query: 43 AGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSA 102
T G + C+ + +VSG D++ ++DI + L H A VR +++
Sbjct: 90 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR- 148
Query: 103 YYLLTGGYDNKLVLTDLQ 120
+++G YD + + D +
Sbjct: 149 -RVVSGAYDFMVKVWDPE 165
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 49.9 bits (117), Expect = 9e-09
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 55 CVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
C+ +++G +D +YD + L H V +++++ L++G D
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDR 74
Score = 44.9 bits (104), Expect = 4e-07
Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 34 IHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQ-TFKPHTAD 92
+ Y+ + + + S ++VSG ++ +Y++R + +
Sbjct: 268 WDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQ 326
Query: 93 VRSIRFSPSAYYLLTGGYDNKLVLTDL 119
+ S+ F + D + L L
Sbjct: 327 IWSVNFKGK-TLVAAVEKDGQSFLEIL 352
Score = 32.6 bits (72), Expect = 0.007
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDH 38
+++G +D +YD + L H V ++ H
Sbjct: 26 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63
Score = 29.1 bits (63), Expect = 0.12
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 85 TFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
T + H V + Y++TG D + + D
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSI 41
Score = 24.5 bits (51), Expect = 4.4
Identities = 3/38 (7%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQ-TFKPHTADVRSIHLD 37
++ ++ +Y++R + + + S++
Sbjct: 296 ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK 333
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 47.3 bits (110), Expect = 7e-08
Identities = 10/68 (14%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 52 SALCVDPSGRLMVSGHEDSSCVLYDIR-GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
A + L+ +G D++ +Y ++ + ++ H V ++ + + L++ G
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA 277
Query: 111 DNKLVLTD 118
D + +
Sbjct: 278 DACIKRWN 285
Score = 38.0 bits (86), Expect = 1e-04
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQGT 122
L+T H + ++ +P L++G YD +++
Sbjct: 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM 41
Score = 35.3 bits (79), Expect = 0.001
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 22/78 (28%)
Query: 1 MVSGHEDSSCVLYDIR-GSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPS 59
+ +G D++ +Y ++ + ++ H V+ L +
Sbjct: 230 VATGSLDTNIFIYSVKRPMKIIKALNAHK--------------------DGVNNLLWETP 269
Query: 60 GRLMVSGHEDSSCVLYDI 77
L VS D+ +++
Sbjct: 270 STL-VSSGADACIKRWNV 286
Score = 32.6 bits (72), Expect = 0.008
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 29/86 (33%)
Query: 19 RPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR 78
L+T H ++AL V+P ++SG D + +
Sbjct: 4 EVLKTISGHNK--------------------GITALTVNP----LISGSYDGRIMEWSSS 39
Query: 79 GSRPLQTFKPHTADVRSIRFSPSAYY 104
+ H+ + S+ S + Y
Sbjct: 40 -----SMHQDHSNLIVSLDNSKAQEY 60
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 45.6 bits (106), Expect = 3e-07
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 51 VSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKP---HTADVRSIRFSPSAYYLLT 107
+S + + PS L++ D S +Y + + F + +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 108 GG 109
G
Sbjct: 74 VG 75
Score = 39.1 bits (89), Expect = 4e-05
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 81 RPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQG 121
+ +Q + + I+ PS LL +D L +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI 42
Score = 27.5 bits (59), Expect = 0.51
Identities = 14/81 (17%), Positives = 19/81 (23%), Gaps = 15/81 (18%)
Query: 55 CVDPSGRLMVSGHEDSSCVLYDIRGS---------------RPLQTFKPHTADVRSIRFS 99
+ D + R V SI FS
Sbjct: 201 LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS 260
Query: 100 PSAYYLLTGGYDNKLVLTDLQ 120
P +L T G D + +LQ
Sbjct: 261 PRHKFLYTAGSDGIISCWNLQ 281
Score = 25.2 bits (53), Expect = 2.4
Identities = 3/37 (8%), Positives = 8/37 (21%), Gaps = 3/37 (8%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKP---HTADVRSI 34
++ D S +Y + +
Sbjct: 26 LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 44.5 bits (103), Expect = 6e-07
Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 29/145 (20%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAG---------------- 44
+VS D + +++ ++T H + + +G
Sbjct: 151 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC 210
Query: 45 --TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR---------GSRPLQTFKPHTADV 93
+G C+ + +VSG D ++D+ G+ L+T H+ V
Sbjct: 211 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 270
Query: 94 RSIRFSPSAYYLLTGGYDNKLVLTD 118
++F +++ +D+ +++ D
Sbjct: 271 FRLQFDEF--QIVSSSHDDTILIWD 293
Score = 43.7 bits (101), Expect = 1e-06
Identities = 10/56 (17%), Positives = 22/56 (39%)
Query: 45 TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP 100
R + C+ + +VSG D++ ++D + HT V +++
Sbjct: 10 CRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Score = 34.1 bits (76), Expect = 0.003
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYT 40
+VSG D++ ++D + HT V + D
Sbjct: 28 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
Score = 29.4 bits (64), Expect = 0.098
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 79 GSRPLQTFKPHTADVRSIR-FSPSAYYLLTGGYDNKLVLTDLQ 120
G LQ + + + +++G DN + + D
Sbjct: 1 GRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN 43
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 44.6 bits (103), Expect = 6e-07
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 45 TRQG--SPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTF-KPHTADVRSIRFSPS 101
R G ++AL G+ + S + +DI + F H + I+ +
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66
Query: 102 AYYLLTGGYDN 112
D+
Sbjct: 67 GDLFTVSWDDH 77
Score = 40.4 bits (92), Expect = 2e-05
Identities = 8/67 (11%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 55 CVDPSGRLMVSGHEDSSCVLYDIR--GSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
P + +G D+S +++++ P+ H + + +++ G D+
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290
Query: 113 KLVLTDL 119
+ ++
Sbjct: 291 NIKFWNV 297
Score = 39.6 bits (90), Expect = 3e-05
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 83 LQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
Q H + ++ S L + + + D+
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 42
Score = 28.0 bits (60), Expect = 0.27
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 1/40 (2%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTF-KPHTADVRSIHLDHY 39
+ S + +DI + F H + I
Sbjct: 27 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 42.9 bits (99), Expect = 2e-06
Identities = 14/127 (11%), Positives = 30/127 (23%), Gaps = 11/127 (8%)
Query: 2 VSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSP-------VSAL 54
+ S + S + + D+ R P S
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282
Query: 55 CVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKL 114
E + YD++ + ++ +R S ++ D K+
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKI 338
Query: 115 VLTDLQG 121
L+
Sbjct: 339 YTFPLEK 345
Score = 30.6 bits (67), Expect = 0.040
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 60 GRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDN 112
G L+ + D+ G+ L+ P +R +R G
Sbjct: 15 GDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTRE 64
Score = 29.8 bits (65), Expect = 0.086
Identities = 7/83 (8%), Positives = 22/83 (26%), Gaps = 1/83 (1%)
Query: 3 SGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRL 62
E S + ++ + T T + ++ L + +
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEK-GVLLKYDVKTRKVTEVKNNLTDLRLSADRKT 328
Query: 63 MVSGHEDSSCVLYDIRGSRPLQT 85
++ +D + + +T
Sbjct: 329 VMVRKDDGKIYTFPLEKPEDERT 351
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 42.9 bits (99), Expect = 2e-06
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 14/116 (12%)
Query: 1 MVSGHEDSSCVL---YDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVD 57
+ H+ +S Y+ + + T ++ + + S V +L +
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS-------SWVMSLSFN 298
Query: 58 PSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVR----SIRFSPSAYYLLTGG 109
SG + S D +D++ + T H D+ + L G
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
Score = 31.0 bits (68), Expect = 0.033
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 84 QTFKPHTADVRSIRFSPSAYYLLTGGYDNKLVLTDLQ 120
K H AD+ S+ S + ++ D L + D +
Sbjct: 8 NAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNK 42
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 41.1 bits (94), Expect = 1e-05
Identities = 7/68 (10%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 55 CVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFK--PHTADVRSIRFSPSA-YYLLTGGYD 111
+ + D++ ++D+ S+ +Q + + + + +++ D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
Query: 112 NKLVLTDL 119
L +L
Sbjct: 318 GTLNFYEL 325
Score = 36.0 bits (81), Expect = 5e-04
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 49 SPVSALCVDPSGRLMVSGHEDSSCV-LYDIRGSR--PLQTFKPH-TADVRSIRFSP--SA 102
+ + L DP+ + S+ V D S+ P+ F H ++ V +++FSP +
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 103 YYLLTGGYDNKL 114
YL +G K+
Sbjct: 78 QYLCSGDESGKV 89
Score = 34.1 bits (76), Expect = 0.002
Identities = 9/77 (11%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+ D++ ++D+ S+ +Q + + + + + +G
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV----------------GVVATGNG 309
Query: 61 RLMVSGHEDSSCVLYDI 77
R+ +S D + Y++
Sbjct: 310 RI-ISLSLDGTLNFYEL 325
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 35.7 bits (81), Expect = 7e-04
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 56 VDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLV 115
+D V+ + L D + ++ A V R S S YLL G D ++
Sbjct: 28 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARID 86
Query: 116 LTD 118
+ D
Sbjct: 87 MID 89
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 35.1 bits (79), Expect = 0.001
Identities = 7/89 (7%), Positives = 21/89 (23%)
Query: 5 HEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMV 64
+ + +R + + L + D G +
Sbjct: 248 ADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLY 307
Query: 65 SGHEDSSCVLYDIRGSRPLQTFKPHTADV 93
G + +++ ++ K D+
Sbjct: 308 LGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
Score = 33.6 bits (75), Expect = 0.003
Identities = 9/76 (11%), Positives = 19/76 (25%), Gaps = 2/76 (2%)
Query: 45 TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYY 104
P + + YD++ + ++ + F
Sbjct: 248 ADLTELYFTGLRSPKDPNQIY-GVLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDK 305
Query: 105 LLTGGYDNKLVLTDLQ 120
L GG N L + +
Sbjct: 306 LYLGGTFNDLAVFNPD 321
Score = 24.7 bits (52), Expect = 4.0
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 98 FSPSAYYLLTGGYDNKLVLTDLQ 120
Y++ Y N L + D+
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVA 26
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 34.0 bits (76), Expect = 0.003
Identities = 12/103 (11%), Positives = 28/103 (27%), Gaps = 3/103 (2%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
V+ H + + K + V + A G + ++ V
Sbjct: 253 QVAYHRALDRIYLLVDQRDEW-RHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDE 311
Query: 61 R--LMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPS 101
+ L D + ++D L++ + I +
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 33.6 bits (76), Expect = 0.004
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 5/90 (5%)
Query: 31 VRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRP-----LQT 85
+ I Y + G V + SGR + D + D+ P ++
Sbjct: 44 IALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI 103
Query: 86 FKPHTADVRSIRFSPSAYYLLTGGYDNKLV 115
+ S Y + G Y
Sbjct: 104 GSEARSIETSKMEGWEDKYAIAGAYWPPQY 133
Score = 31.3 bits (70), Expect = 0.024
Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 56 VDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGYDNKLV 115
D V+ + L D A V R S S YL G D K+
Sbjct: 28 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVN 86
Query: 116 LTDL 119
+ DL
Sbjct: 87 MIDL 90
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 31.7 bits (70), Expect = 0.015
Identities = 8/75 (10%), Positives = 15/75 (20%)
Query: 22 QTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSR 81
+ S L+ + ++ V G + G YD
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312
Query: 82 PLQTFKPHTADVRSI 96
S+
Sbjct: 313 KKGQVDLPGNASMSL 327
Score = 31.3 bits (69), Expect = 0.024
Identities = 18/129 (13%), Positives = 31/129 (24%), Gaps = 24/129 (18%)
Query: 1 MVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSG 60
+++ V+ D + G V P G
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIAD------------------AGPTPMVPMVAPGG 45
Query: 61 R-LMVSGHEDSSCVLYDIRGSRPLQTFKPHTAD-----VRSIRFSPSAYYLLTGGYDNKL 114
R + ++ S V D+ L T + + SP L +L
Sbjct: 46 RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRL 105
Query: 115 VLTDLQGTM 123
LT +
Sbjct: 106 ELTHFEVQP 114
Score = 28.2 bits (61), Expect = 0.25
Identities = 8/63 (12%), Positives = 14/63 (22%), Gaps = 3/63 (4%)
Query: 61 RLMVSGHEDSSCVLYDIRGSRPLQTFK--PHTADVRSIRFSPSAYYLL-TGGYDNKLVLT 117
+++ V+ D + +P T LV
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 118 DLQ 120
DL
Sbjct: 62 DLV 64
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 29.5 bits (64), Expect = 0.11
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 48 GSPVSALCVDPSG-RLMVSGHEDSSCVLYDIRGSRPLQTFK 87
G + + V P G ++ V+ ++ + D + T
Sbjct: 243 GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 26.9 bits (58), Expect = 0.73
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 48 GSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLT 107
+ + L P G + V+ HE V G+ Q V + F+ + + T
Sbjct: 27 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVAT 84
Query: 108 GGYDNKL 114
G + +
Sbjct: 85 GWNADSI 91
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 26.7 bits (57), Expect = 0.98
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 35 HLDHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIR-GSRPLQTFKPHTADV 93
H+D Y T A R+ +PV+ + +V+G++++ L D+R S P + + +
Sbjct: 11 HVDWYRTYAELRETAPVTPVRFLGQDAWLVTGYDEAKAALSDLRLSSDPKKKYPGVEVEF 70
Query: 94 RSIRFSPSAYYLLTGG 109
+ P
Sbjct: 71 PAYLGFPEDVRNYFAT 86
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 25.5 bits (54), Expect = 2.2
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 37 DHYTTEAGTRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADV 93
DH+T R+G P + + V VS +L S+ + P +V
Sbjct: 10 DHHTEHRTLREGGPATWVDVLGVQAWSVSDPVLLKQLLTSSDVSKDARAHWPAFGEV 66
>d2a2la1 d.110.9.1 (A:4-145) DhaI homolog {Klebsiella pneumoniae
[TaxId: 573]}
Length = 142
Score = 24.3 bits (52), Expect = 3.7
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 42 EAGTRQGSPVSALCVDPSGRLMVSGHED 69
+ T V VD G ++ D
Sbjct: 24 KKATEINVAVVFSVVDRGGNTLLIQRMD 51
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 24.6 bits (52), Expect = 4.3
Identities = 7/67 (10%), Positives = 16/67 (23%), Gaps = 2/67 (2%)
Query: 23 TFKPHTADVRSIHLDHYTTEAGTRQGSPVSALCVDPSGR--LMVSGHEDSSCVLYDIRGS 80
+ + S+ T G A+ G + +YD
Sbjct: 288 SCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347
Query: 81 RPLQTFK 87
+ + +
Sbjct: 348 QDQSSVE 354
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 24.4 bits (51), Expect = 4.8
Identities = 8/65 (12%), Positives = 16/65 (24%), Gaps = 2/65 (3%)
Query: 53 ALCVDPSGRLMVSGHEDS--SCVLYDIRGSRPLQTFKPHTADVRSIRFSPSAYYLLTGGY 110
+ D + + + F+P R S YL+ G
Sbjct: 236 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ 295
Query: 111 DNKLV 115
+ +
Sbjct: 296 KSHHI 300
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 24.3 bits (51), Expect = 5.8
Identities = 9/56 (16%), Positives = 22/56 (39%)
Query: 45 TRQGSPVSALCVDPSGRLMVSGHEDSSCVLYDIRGSRPLQTFKPHTADVRSIRFSP 100
+++G + L D G+L + + + + + F H A+ +I+
Sbjct: 36 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 439,024
Number of extensions: 16920
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 84
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)