Query psy14461
Match_columns 535
No_of_seqs 520 out of 4113
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 20:28:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1249 Lpd Pyruvate/2-oxoglut 100.0 4.5E-69 9.7E-74 559.5 47.5 418 88-535 4-439 (454)
2 TIGR01421 gluta_reduc_1 glutat 100.0 7.7E-63 1.7E-67 522.8 47.9 418 89-535 3-435 (450)
3 TIGR01423 trypano_reduc trypan 100.0 7.6E-63 1.6E-67 524.7 47.7 417 89-535 4-456 (486)
4 TIGR01424 gluta_reduc_2 glutat 100.0 2.7E-62 5.8E-67 519.0 48.7 415 89-535 3-431 (446)
5 PRK06116 glutathione reductase 100.0 2.9E-62 6.4E-67 520.0 47.9 417 89-535 5-435 (450)
6 PLN02546 glutathione reductase 100.0 1.7E-62 3.6E-67 527.5 45.6 416 89-535 80-517 (558)
7 PTZ00058 glutathione reductase 100.0 1.9E-61 4.1E-66 519.0 49.4 420 89-535 49-542 (561)
8 PLN02507 glutathione reductase 100.0 1.9E-61 4E-66 517.1 48.3 416 89-535 26-468 (499)
9 PRK06467 dihydrolipoamide dehy 100.0 5.6E-61 1.2E-65 511.4 50.9 417 89-535 5-440 (471)
10 PRK06370 mercuric reductase; V 100.0 3.1E-61 6.7E-66 513.8 48.2 417 89-535 6-438 (463)
11 PRK07846 mycothione reductase; 100.0 4.5E-61 9.7E-66 509.1 46.2 411 89-534 2-429 (451)
12 TIGR01438 TGR thioredoxin and 100.0 2E-60 4.3E-65 507.3 47.8 421 89-535 3-453 (484)
13 TIGR02053 MerA mercuric reduct 100.0 3.4E-60 7.3E-65 506.0 48.4 417 89-535 1-433 (463)
14 PRK06115 dihydrolipoamide dehy 100.0 1.2E-59 2.5E-64 501.0 50.5 417 89-535 4-441 (466)
15 KOG1335|consensus 100.0 6.7E-61 1.5E-65 463.7 36.5 419 88-534 39-479 (506)
16 PRK07818 dihydrolipoamide dehy 100.0 1.2E-59 2.5E-64 501.8 49.6 416 89-535 5-441 (466)
17 PRK07845 flavoprotein disulfid 100.0 1.3E-59 2.8E-64 500.6 48.2 414 89-535 2-441 (466)
18 TIGR03452 mycothione_red mycot 100.0 9.2E-60 2E-64 499.5 46.2 411 89-534 3-432 (452)
19 PTZ00153 lipoamide dehydrogena 100.0 1E-59 2.3E-64 511.5 47.5 439 88-535 116-635 (659)
20 PRK06912 acoL dihydrolipoamide 100.0 1.8E-59 3.8E-64 499.1 48.1 413 90-535 2-433 (458)
21 PRK05249 soluble pyridine nucl 100.0 3.5E-59 7.5E-64 498.3 50.0 414 89-535 6-438 (461)
22 PRK08010 pyridine nucleotide-d 100.0 3.6E-59 7.9E-64 495.0 49.7 402 89-535 4-422 (441)
23 KOG0405|consensus 100.0 1.8E-60 3.8E-65 455.4 35.3 419 88-535 20-457 (478)
24 PRK06416 dihydrolipoamide dehy 100.0 1.1E-58 2.5E-63 494.3 49.1 414 89-535 5-437 (462)
25 PTZ00052 thioredoxin reductase 100.0 1.3E-58 2.8E-63 495.6 47.9 431 89-535 6-463 (499)
26 PRK07251 pyridine nucleotide-d 100.0 2.8E-58 6E-63 487.9 50.0 401 89-535 4-421 (438)
27 PRK14727 putative mercuric red 100.0 1.9E-58 4.1E-63 493.3 47.6 412 89-535 17-449 (479)
28 PRK14694 putative mercuric red 100.0 1.9E-58 4.1E-63 492.5 47.4 411 88-535 6-438 (468)
29 PRK06292 dihydrolipoamide dehy 100.0 2.8E-58 6E-63 491.2 47.1 414 89-535 4-435 (460)
30 PRK06327 dihydrolipoamide dehy 100.0 5.3E-58 1.1E-62 489.7 48.8 417 89-535 5-450 (475)
31 PRK05976 dihydrolipoamide dehy 100.0 1.2E-57 2.6E-62 487.1 49.5 417 88-535 4-447 (472)
32 PRK13748 putative mercuric red 100.0 1.3E-57 2.8E-62 497.7 47.5 411 89-535 99-531 (561)
33 KOG4716|consensus 100.0 4.1E-58 8.9E-63 437.3 28.4 425 89-535 20-473 (503)
34 TIGR01350 lipoamide_DH dihydro 100.0 1.2E-55 2.5E-60 471.3 50.8 416 89-535 2-436 (461)
35 PRK13512 coenzyme A disulfide 100.0 3.8E-55 8.2E-60 463.0 38.5 380 89-535 2-415 (438)
36 PRK09564 coenzyme A disulfide 100.0 3.3E-52 7.2E-57 442.7 39.8 384 90-535 2-421 (444)
37 TIGR03385 CoA_CoA_reduc CoA-di 100.0 8.8E-49 1.9E-53 414.2 38.0 369 104-535 5-408 (427)
38 PRK14989 nitrite reductase sub 100.0 1.7E-42 3.6E-47 388.1 36.3 368 90-533 5-401 (847)
39 PRK04965 NADH:flavorubredoxin 100.0 1.5E-37 3.3E-42 323.0 34.6 307 90-433 4-329 (377)
40 TIGR02374 nitri_red_nirB nitri 100.0 1.1E-37 2.4E-42 349.8 34.7 359 91-530 1-383 (785)
41 PRK09754 phenylpropionate diox 100.0 2.1E-37 4.6E-42 323.9 32.3 354 90-529 5-385 (396)
42 PRK12831 putative oxidoreducta 100.0 4E-36 8.7E-41 318.9 29.5 327 34-405 50-458 (464)
43 KOG1336|consensus 100.0 6.2E-36 1.4E-40 300.9 28.6 417 19-532 14-462 (478)
44 TIGR01316 gltA glutamate synth 100.0 1.2E-35 2.7E-40 314.6 25.8 328 33-405 37-447 (449)
45 PRK12779 putative bifunctional 100.0 7.3E-35 1.6E-39 329.4 31.5 340 21-405 194-624 (944)
46 PTZ00318 NADH dehydrogenase-li 100.0 3.8E-34 8.3E-39 301.6 30.5 275 89-405 11-345 (424)
47 PRK09853 putative selenate red 100.0 7.9E-34 1.7E-38 316.0 31.0 343 15-407 431-841 (1019)
48 TIGR03315 Se_ygfK putative sel 100.0 2.6E-33 5.6E-38 313.6 30.9 328 29-407 442-839 (1012)
49 COG1252 Ndh NADH dehydrogenase 100.0 2.7E-33 5.8E-38 284.7 27.8 276 89-405 4-329 (405)
50 TIGR03140 AhpF alkyl hydropero 100.0 3.5E-33 7.5E-38 300.9 28.7 281 88-405 212-510 (515)
51 PRK15317 alkyl hydroperoxide r 100.0 2E-32 4.3E-37 295.4 31.8 282 88-405 211-509 (517)
52 PRK11749 dihydropyrimidine deh 100.0 7.9E-33 1.7E-37 294.5 28.2 322 42-405 55-449 (457)
53 TIGR03169 Nterm_to_SelD pyridi 100.0 2.2E-32 4.9E-37 283.2 27.6 274 90-405 1-308 (364)
54 TIGR01292 TRX_reduct thioredox 100.0 4.1E-32 8.9E-37 273.2 28.8 282 89-405 1-298 (300)
55 PRK12778 putative bifunctional 100.0 1.9E-32 4.1E-37 307.6 29.2 323 42-405 344-747 (752)
56 PRK12775 putative trifunctiona 100.0 1.3E-32 2.8E-37 313.8 28.2 328 32-404 339-751 (1006)
57 PRK12810 gltD glutamate syntha 100.0 1.1E-32 2.4E-37 294.0 25.7 326 42-405 59-462 (471)
58 PRK12814 putative NADPH-depend 100.0 4.3E-32 9.2E-37 299.1 29.3 327 32-404 102-497 (652)
59 COG1251 NirB NAD(P)H-nitrite r 100.0 2.5E-32 5.4E-37 286.4 24.2 364 89-533 4-391 (793)
60 PRK10262 thioredoxin reductase 100.0 1.3E-31 2.7E-36 272.7 27.2 288 88-405 6-312 (321)
61 PRK12769 putative oxidoreducta 100.0 1.1E-31 2.3E-36 297.1 28.1 323 42-405 241-649 (654)
62 COG0492 TrxB Thioredoxin reduc 100.0 2.9E-31 6.2E-36 264.1 27.9 278 88-405 3-298 (305)
63 TIGR01318 gltD_gamma_fam gluta 100.0 2.2E-31 4.7E-36 283.2 28.2 327 34-405 50-463 (467)
64 TIGR03143 AhpF_homolog putativ 100.0 6.2E-31 1.3E-35 285.5 28.5 282 88-404 4-305 (555)
65 PRK12809 putative oxidoreducta 100.0 2.2E-30 4.7E-35 285.5 28.5 323 42-405 224-632 (639)
66 TIGR01317 GOGAT_sm_gam glutama 100.0 1.5E-30 3.2E-35 277.9 25.5 326 42-405 59-476 (485)
67 PRK12770 putative glutamate sy 100.0 1.2E-29 2.5E-34 261.4 27.2 277 89-405 19-347 (352)
68 PRK13984 putative oxidoreducta 100.0 1.6E-29 3.6E-34 278.0 26.0 329 31-405 190-599 (604)
69 PRK12771 putative glutamate sy 100.0 1.3E-28 2.9E-33 268.4 28.1 343 13-404 31-440 (564)
70 KOG0399|consensus 100.0 1.6E-29 3.6E-34 269.7 13.3 338 21-404 1690-2116(2142)
71 KOG0404|consensus 100.0 1.7E-27 3.8E-32 216.0 18.3 286 89-403 9-314 (322)
72 PLN02852 ferredoxin-NADP+ redu 100.0 2.3E-26 5.1E-31 242.4 26.3 282 89-405 27-419 (491)
73 COG0446 HcaD Uncharacterized N 99.9 1E-25 2.2E-30 236.8 30.0 377 91-534 1-408 (415)
74 KOG2495|consensus 99.9 1.3E-26 2.8E-31 229.4 19.9 278 89-404 56-393 (491)
75 COG0493 GltD NADPH-dependent g 99.9 7.1E-26 1.5E-30 236.4 15.4 331 39-404 40-447 (457)
76 COG3634 AhpF Alkyl hydroperoxi 99.9 1.7E-25 3.6E-30 215.2 15.8 288 87-406 210-513 (520)
77 TIGR01372 soxA sarcosine oxida 99.9 8.5E-23 1.8E-27 234.8 29.3 269 88-404 163-468 (985)
78 PRK06567 putative bifunctional 99.9 1E-20 2.2E-25 208.8 24.5 305 51-404 306-766 (1028)
79 KOG1346|consensus 99.9 7E-22 1.5E-26 194.1 13.2 312 89-427 179-538 (659)
80 PLN02172 flavin-containing mon 99.8 2.8E-18 6.1E-23 181.6 25.9 285 89-407 11-352 (461)
81 PF02852 Pyr_redox_dim: Pyridi 99.8 8.7E-19 1.9E-23 149.2 11.0 95 416-535 1-95 (110)
82 PF00743 FMO-like: Flavin-bind 99.7 2.1E-15 4.4E-20 162.0 25.3 300 89-407 2-396 (531)
83 PF07992 Pyr_redox_2: Pyridine 99.7 5.3E-17 1.1E-21 153.5 10.9 174 90-382 1-197 (201)
84 PF13434 K_oxygenase: L-lysine 99.7 1.2E-14 2.7E-19 148.0 21.6 250 87-341 1-340 (341)
85 COG1148 HdrA Heterodisulfide r 99.6 1.5E-14 3.1E-19 145.9 21.2 196 204-404 297-541 (622)
86 KOG2755|consensus 99.6 2.6E-15 5.7E-20 140.3 14.7 257 91-382 2-320 (334)
87 KOG3851|consensus 99.6 9.3E-15 2E-19 140.1 16.3 279 88-404 39-357 (446)
88 COG3486 IucD Lysine/ornithine 99.6 9.3E-14 2E-18 138.4 23.0 203 204-407 142-414 (436)
89 PTZ00188 adrenodoxin reductase 99.6 2.2E-13 4.7E-18 142.1 22.1 273 89-405 40-437 (506)
90 KOG1800|consensus 99.5 3.5E-13 7.6E-18 132.5 17.2 279 90-405 22-404 (468)
91 PRK05329 anaerobic glycerol-3- 99.5 3.5E-12 7.6E-17 133.1 25.0 155 244-405 218-418 (422)
92 PF13738 Pyr_redox_3: Pyridine 99.5 1E-13 2.2E-18 131.2 12.4 169 92-272 1-198 (203)
93 PF00070 Pyr_redox: Pyridine n 99.4 2.2E-12 4.9E-17 103.0 12.2 76 243-319 1-78 (80)
94 COG2072 TrkA Predicted flavopr 99.3 5.4E-12 1.2E-16 133.3 12.4 167 88-272 8-206 (443)
95 KOG1399|consensus 99.2 4.6E-10 9.9E-15 117.4 17.6 285 89-407 7-333 (448)
96 COG4529 Uncharacterized protei 98.9 2.2E-06 4.7E-11 88.6 27.0 177 89-272 2-229 (474)
97 TIGR01292 TRX_reduct thioredox 98.7 1.3E-07 2.9E-12 94.8 13.7 98 243-347 2-117 (300)
98 PRK12842 putative succinate de 98.6 4.5E-07 9.8E-12 99.6 13.7 110 231-343 147-276 (574)
99 TIGR03378 glycerol3P_GlpB glyc 98.6 2.4E-05 5.1E-10 81.3 24.8 135 264-404 247-419 (419)
100 COG2081 Predicted flavoprotein 98.5 9.6E-07 2.1E-11 89.0 12.2 96 242-343 4-170 (408)
101 COG2081 Predicted flavoprotein 98.5 1E-06 2.2E-11 88.9 11.2 133 88-221 3-171 (408)
102 KOG1752|consensus 98.5 5.3E-07 1.2E-11 74.7 7.3 65 48-114 4-68 (104)
103 PHA03050 glutaredoxin; Provisi 98.4 1.3E-06 2.8E-11 73.6 8.0 73 48-122 3-79 (108)
104 PRK09897 hypothetical protein; 98.3 2.7E-05 5.8E-10 84.0 19.2 84 178-263 116-213 (534)
105 PRK07843 3-ketosteroid-delta-1 98.3 2.1E-06 4.6E-11 93.9 10.9 106 237-345 156-273 (557)
106 TIGR03140 AhpF alkyl hydropero 98.3 5.3E-06 1.2E-10 90.0 13.9 100 240-345 211-326 (515)
107 PLN02172 flavin-containing mon 98.3 6.1E-06 1.3E-10 87.9 13.8 105 241-347 10-180 (461)
108 PF13738 Pyr_redox_3: Pyridine 98.3 3.9E-06 8.4E-11 79.2 10.8 97 245-347 1-145 (203)
109 PRK09754 phenylpropionate diox 98.3 2.7E-06 6E-11 89.2 10.5 96 241-344 3-114 (396)
110 PF03486 HI0933_like: HI0933-l 98.3 3.3E-06 7.1E-11 88.3 9.9 95 243-342 2-166 (409)
111 PRK09564 coenzyme A disulfide 98.3 4.5E-06 9.7E-11 88.9 11.3 102 242-346 1-119 (444)
112 TIGR02189 GlrX-like_plant Glut 98.3 2E-06 4.3E-11 71.4 6.6 61 52-114 2-62 (99)
113 PRK15317 alkyl hydroperoxide r 98.2 1.2E-05 2.7E-10 87.2 13.8 99 241-345 211-325 (517)
114 PF03486 HI0933_like: HI0933-l 98.2 5.5E-06 1.2E-10 86.6 10.5 131 89-219 1-166 (409)
115 PF01494 FAD_binding_3: FAD bi 98.2 1.5E-05 3.3E-10 81.5 13.5 102 243-345 3-175 (356)
116 PRK06847 hypothetical protein; 98.2 1.7E-05 3.6E-10 82.5 13.0 99 241-345 4-166 (375)
117 PRK06134 putative FAD-binding 98.2 1.3E-05 2.8E-10 88.2 12.6 230 88-343 12-279 (581)
118 PRK13512 coenzyme A disulfide 98.2 8.8E-06 1.9E-10 86.5 10.9 102 242-346 2-121 (438)
119 PTZ00318 NADH dehydrogenase-li 98.1 1.6E-05 3.4E-10 84.2 11.5 103 241-346 10-129 (424)
120 PRK04176 ribulose-1,5-biphosph 98.1 9.1E-05 2E-09 72.8 16.0 164 242-405 26-252 (257)
121 TIGR02032 GG-red-SF geranylger 98.1 3.5E-05 7.6E-10 76.9 12.4 96 243-343 2-149 (295)
122 TIGR00292 thiazole biosynthesi 98.1 7.6E-05 1.7E-09 73.1 14.2 164 241-405 21-251 (254)
123 PRK10262 thioredoxin reductase 98.1 5.8E-05 1.2E-09 76.8 14.0 99 240-346 5-121 (321)
124 PRK07236 hypothetical protein; 98.1 2.6E-05 5.6E-10 81.6 11.3 98 241-344 6-156 (386)
125 PF00743 FMO-like: Flavin-bind 98.1 3.2E-05 6.9E-10 83.7 12.2 136 242-382 2-193 (531)
126 TIGR00136 gidA glucose-inhibit 98.0 0.00024 5.3E-09 77.0 18.3 33 89-121 1-33 (617)
127 PRK12770 putative glutamate sy 98.0 1.6E-05 3.5E-10 82.0 9.1 104 238-344 15-133 (352)
128 PF07992 Pyr_redox_2: Pyridine 98.0 8.3E-06 1.8E-10 76.7 6.3 102 243-347 1-127 (201)
129 COG1252 Ndh NADH dehydrogenase 98.0 3E-05 6.6E-10 80.0 10.1 99 241-347 3-116 (405)
130 PRK04965 NADH:flavorubredoxin 98.0 4.8E-05 1E-09 79.3 11.6 96 242-346 3-115 (377)
131 PRK10824 glutaredoxin-4; Provi 98.0 2.4E-05 5.2E-10 66.3 7.5 64 46-114 3-71 (115)
132 TIGR01424 gluta_reduc_2 glutat 98.0 6.4E-05 1.4E-09 80.2 12.4 94 243-346 4-146 (446)
133 TIGR03143 AhpF_homolog putativ 98.0 8.2E-05 1.8E-09 81.5 13.4 98 242-346 5-118 (555)
134 TIGR03169 Nterm_to_SelD pyridi 98.0 3.4E-05 7.3E-10 80.0 9.9 97 243-347 1-112 (364)
135 PRK09853 putative selenate red 97.9 4.1E-05 8.9E-10 87.4 10.7 87 241-343 539-636 (1019)
136 PRK14989 nitrite reductase sub 97.9 4.4E-05 9.6E-10 87.0 11.1 98 242-347 4-118 (847)
137 PRK08244 hypothetical protein; 97.9 9.8E-05 2.1E-09 79.8 13.3 98 242-342 3-159 (493)
138 TIGR00551 nadB L-aspartate oxi 97.9 0.00023 4.9E-09 76.8 15.9 47 359-405 333-387 (488)
139 TIGR00365 monothiol glutaredox 97.9 3.9E-05 8.3E-10 63.4 7.6 61 49-114 3-68 (97)
140 PRK12779 putative bifunctional 97.9 3.2E-05 7E-10 89.1 9.5 91 240-344 305-407 (944)
141 PRK06834 hypothetical protein; 97.9 0.00013 2.7E-09 78.7 13.5 97 242-344 4-158 (488)
142 PRK06184 hypothetical protein; 97.9 0.00012 2.7E-09 79.2 13.4 97 242-341 4-167 (502)
143 PRK07364 2-octaprenyl-6-methox 97.9 0.00013 2.7E-09 77.1 12.8 101 241-344 18-183 (415)
144 PRK08773 2-octaprenyl-3-methyl 97.9 0.00013 2.8E-09 76.4 12.6 99 241-345 6-172 (392)
145 PRK07251 pyridine nucleotide-d 97.9 0.00012 2.6E-09 77.8 12.5 96 243-346 5-134 (438)
146 PF01134 GIDA: Glucose inhibit 97.9 0.00014 2.9E-09 74.9 12.3 92 243-340 1-150 (392)
147 TIGR01316 gltA glutamate synth 97.9 2.5E-05 5.5E-10 83.2 7.3 91 240-345 132-234 (449)
148 PRK08163 salicylate hydroxylas 97.8 0.00017 3.7E-09 75.5 12.9 98 241-344 4-168 (396)
149 PRK11749 dihydropyrimidine deh 97.8 3.6E-05 7.8E-10 82.3 7.8 90 239-343 138-239 (457)
150 PLN02463 lycopene beta cyclase 97.8 0.00016 3.4E-09 76.8 12.2 96 242-343 29-170 (447)
151 PF01266 DAO: FAD dependent ox 97.8 0.002 4.4E-08 65.8 20.2 57 280-343 146-204 (358)
152 PRK07333 2-octaprenyl-6-methox 97.8 0.00019 4.2E-09 75.3 12.8 96 243-344 3-169 (403)
153 PRK07588 hypothetical protein; 97.8 0.00024 5.2E-09 74.3 13.4 97 243-346 2-162 (391)
154 KOG1399|consensus 97.8 0.00037 8E-09 73.4 14.5 107 240-347 5-160 (448)
155 TIGR02374 nitri_red_nirB nitri 97.8 9.2E-05 2E-09 84.3 10.8 96 244-347 1-113 (785)
156 PRK06183 mhpA 3-(3-hydroxyphen 97.8 0.00022 4.8E-09 77.9 13.4 100 241-342 10-174 (538)
157 PRK05249 soluble pyridine nucl 97.8 0.00018 3.9E-09 77.1 12.4 97 242-345 6-152 (461)
158 TIGR01318 gltD_gamma_fam gluta 97.8 4.5E-05 9.7E-10 81.7 7.6 90 240-344 140-240 (467)
159 COG0492 TrxB Thioredoxin reduc 97.8 0.00079 1.7E-08 67.6 15.9 99 242-347 4-120 (305)
160 PRK06475 salicylate hydroxylas 97.8 0.00028 6.2E-09 74.1 13.5 101 242-345 3-170 (400)
161 COG0654 UbiH 2-polyprenyl-6-me 97.8 0.00029 6.3E-09 73.7 13.3 98 242-344 3-164 (387)
162 KOG0399|consensus 97.8 0.00033 7.1E-09 78.2 13.7 185 240-444 1784-1994(2142)
163 PRK05976 dihydrolipoamide dehy 97.8 0.00021 4.5E-09 76.8 12.4 99 242-344 5-156 (472)
164 PRK05714 2-octaprenyl-3-methyl 97.8 0.00015 3.3E-09 76.2 10.9 98 242-345 3-171 (405)
165 PRK05868 hypothetical protein; 97.8 0.00029 6.2E-09 73.3 12.8 98 242-345 2-163 (372)
166 PRK07845 flavoprotein disulfid 97.8 0.00015 3.3E-09 77.7 10.9 98 242-344 2-153 (466)
167 PRK11728 hydroxyglutarate oxid 97.8 0.0017 3.8E-08 68.0 18.6 56 280-342 148-204 (393)
168 PTZ00188 adrenodoxin reductase 97.7 8.6E-05 1.9E-09 78.3 8.4 90 239-343 37-139 (506)
169 COG0579 Predicted dehydrogenas 97.7 0.001 2.2E-08 69.3 16.1 58 281-342 153-211 (429)
170 PRK09126 hypothetical protein; 97.7 0.00039 8.5E-09 72.7 13.3 98 242-345 4-170 (392)
171 PRK06467 dihydrolipoamide dehy 97.7 0.00019 4.2E-09 77.0 11.0 95 242-343 5-149 (471)
172 PRK12831 putative oxidoreducta 97.7 7.5E-05 1.6E-09 79.9 7.6 93 239-344 138-243 (464)
173 TIGR01317 GOGAT_sm_gam glutama 97.7 0.0001 2.3E-09 79.3 8.7 89 240-343 142-242 (485)
174 PRK08243 4-hydroxybenzoate 3-m 97.7 0.00047 1E-08 72.2 13.4 102 242-345 3-166 (392)
175 PRK08010 pyridine nucleotide-d 97.7 0.00037 8E-09 74.2 12.8 96 243-346 5-135 (441)
176 TIGR01984 UbiH 2-polyprenyl-6- 97.7 0.0004 8.7E-09 72.3 12.6 95 243-343 1-163 (382)
177 PRK08132 FAD-dependent oxidore 97.7 0.00051 1.1E-08 75.3 14.0 101 241-344 23-187 (547)
178 PRK06126 hypothetical protein; 97.7 0.00048 1E-08 75.5 13.7 101 241-342 7-188 (545)
179 PRK14694 putative mercuric red 97.7 0.00049 1.1E-08 73.9 13.5 100 242-347 7-157 (468)
180 PRK06116 glutathione reductase 97.7 0.00023 5E-09 76.0 11.0 93 243-347 6-148 (450)
181 cd03028 GRX_PICOT_like Glutare 97.7 0.00013 2.7E-09 59.5 6.9 65 52-121 2-72 (90)
182 COG1148 HdrA Heterodisulfide r 97.7 0.00023 5.1E-09 73.2 10.1 76 240-316 123-213 (622)
183 PRK12409 D-amino acid dehydrog 97.7 0.0052 1.1E-07 64.7 20.9 57 282-341 198-257 (410)
184 PLN02852 ferredoxin-NADP+ redu 97.7 0.00012 2.5E-09 78.3 8.3 89 240-343 25-127 (491)
185 PRK06753 hypothetical protein; 97.7 0.00041 8.9E-09 72.0 12.3 97 243-345 2-155 (373)
186 COG3075 GlpB Anaerobic glycero 97.7 0.0025 5.5E-08 62.8 16.6 119 282-405 259-415 (421)
187 PRK07190 hypothetical protein; 97.7 0.0005 1.1E-08 74.0 12.9 94 242-341 6-164 (487)
188 COG0644 FixC Dehydrogenases (f 97.6 0.00037 8E-09 73.1 11.5 41 88-128 3-43 (396)
189 TIGR01988 Ubi-OHases Ubiquinon 97.6 0.00055 1.2E-08 71.2 12.8 96 243-344 1-165 (385)
190 PRK10157 putative oxidoreducta 97.6 0.00065 1.4E-08 72.0 13.2 95 242-342 6-164 (428)
191 PRK08013 oxidoreductase; Provi 97.6 0.00062 1.3E-08 71.5 12.8 98 242-345 4-171 (400)
192 TIGR02032 GG-red-SF geranylger 97.6 0.00047 1E-08 68.7 11.4 36 90-125 2-37 (295)
193 PRK06115 dihydrolipoamide dehy 97.6 0.00044 9.5E-09 74.2 11.7 30 243-272 5-34 (466)
194 PRK04176 ribulose-1,5-biphosph 97.6 0.00016 3.5E-09 71.0 7.6 48 76-124 14-61 (257)
195 PRK06617 2-octaprenyl-6-methox 97.6 0.00064 1.4E-08 70.7 12.6 96 243-345 3-163 (374)
196 PRK12778 putative bifunctional 97.6 0.00013 2.8E-09 82.9 7.8 90 241-344 431-532 (752)
197 PRK12810 gltD glutamate syntha 97.6 0.00015 3.3E-09 77.8 7.9 87 240-341 142-239 (471)
198 TIGR01421 gluta_reduc_1 glutat 97.6 0.00044 9.6E-09 73.8 11.4 91 243-345 4-144 (450)
199 PRK07045 putative monooxygenas 97.6 0.00089 1.9E-08 70.0 13.5 99 242-345 6-168 (388)
200 PRK08020 ubiF 2-octaprenyl-3-m 97.6 0.00046 9.9E-09 72.2 11.3 97 242-344 6-171 (391)
201 PRK12775 putative trifunctiona 97.6 0.00012 2.7E-09 85.1 7.4 91 241-344 430-532 (1006)
202 PRK06416 dihydrolipoamide dehy 97.6 0.00054 1.2E-08 73.4 11.8 94 243-344 6-148 (462)
203 TIGR03315 Se_ygfK putative sel 97.6 0.00023 4.9E-09 81.7 9.2 87 241-343 537-634 (1012)
204 PRK00711 D-amino acid dehydrog 97.6 0.005 1.1E-07 64.9 18.7 54 281-341 201-256 (416)
205 TIGR01790 carotene-cycl lycope 97.5 0.0009 1.9E-08 69.9 12.7 95 243-342 1-141 (388)
206 PRK07608 ubiquinone biosynthes 97.5 0.00087 1.9E-08 69.9 12.6 97 242-344 6-169 (388)
207 PLN02463 lycopene beta cyclase 97.5 0.00055 1.2E-08 72.7 11.1 127 88-220 28-170 (447)
208 TIGR02360 pbenz_hydroxyl 4-hyd 97.5 0.0013 2.7E-08 69.0 13.6 103 241-345 2-166 (390)
209 PRK07538 hypothetical protein; 97.5 0.0011 2.4E-08 70.0 13.1 101 243-344 2-167 (413)
210 PRK12809 putative oxidoreducta 97.5 0.0002 4.3E-09 79.8 7.7 89 240-343 309-408 (639)
211 PF13454 NAD_binding_9: FAD-NA 97.5 0.0014 3E-08 59.2 11.8 31 92-122 1-36 (156)
212 PLN02661 Putative thiazole syn 97.5 0.004 8.7E-08 63.3 16.2 162 242-405 93-325 (357)
213 PRK06370 mercuric reductase; V 97.5 0.00084 1.8E-08 72.0 12.0 93 242-346 6-149 (463)
214 PLN02697 lycopene epsilon cycl 97.5 0.0012 2.5E-08 71.5 13.0 96 242-342 109-248 (529)
215 PRK06912 acoL dihydrolipoamide 97.5 0.00097 2.1E-08 71.4 12.4 30 243-272 2-31 (458)
216 PRK08849 2-octaprenyl-3-methyl 97.5 0.0012 2.7E-08 68.8 12.7 98 242-345 4-170 (384)
217 TIGR01790 carotene-cycl lycope 97.5 0.00068 1.5E-08 70.8 10.8 126 90-219 1-141 (388)
218 PRK08850 2-octaprenyl-6-methox 97.5 0.0013 2.9E-08 69.1 12.7 97 242-344 5-170 (405)
219 PLN02507 glutathione reductase 97.5 0.0016 3.4E-08 70.5 13.4 100 242-347 26-184 (499)
220 PRK05192 tRNA uridine 5-carbox 97.4 0.0012 2.5E-08 71.9 12.2 33 89-121 5-37 (618)
221 TIGR00275 flavoprotein, HI0933 97.4 0.00096 2.1E-08 70.1 11.4 91 245-342 1-160 (400)
222 PRK01438 murD UDP-N-acetylmura 97.4 0.00028 6E-09 76.0 7.5 79 240-347 15-95 (480)
223 PRK12769 putative oxidoreducta 97.4 0.00028 6E-09 78.9 7.7 88 240-342 326-424 (654)
224 PRK12814 putative NADPH-depend 97.4 0.00024 5.2E-09 79.2 7.2 89 240-343 192-291 (652)
225 PRK06185 hypothetical protein; 97.4 0.002 4.3E-08 67.7 13.7 99 242-343 7-170 (407)
226 PRK10015 oxidoreductase; Provi 97.4 0.0018 3.8E-08 68.7 13.2 96 242-343 6-165 (429)
227 COG2072 TrkA Predicted flavopr 97.4 0.0029 6.3E-08 67.2 14.7 133 242-382 9-185 (443)
228 PRK05192 tRNA uridine 5-carbox 97.4 0.0015 3.4E-08 71.0 12.7 92 243-340 6-155 (618)
229 PRK07494 2-octaprenyl-6-methox 97.4 0.0016 3.4E-08 68.1 12.6 97 242-344 8-169 (388)
230 TIGR00292 thiazole biosynthesi 97.4 0.00024 5.2E-09 69.6 5.8 37 88-124 21-57 (254)
231 TIGR02023 BchP-ChlP geranylger 97.4 0.0026 5.6E-08 66.5 13.8 99 243-343 2-156 (388)
232 PRK09897 hypothetical protein; 97.4 0.0024 5.1E-08 69.2 13.4 97 242-343 2-167 (534)
233 PRK07818 dihydrolipoamide dehy 97.4 0.0013 2.9E-08 70.5 11.6 32 242-273 5-36 (466)
234 PRK13748 putative mercuric red 97.4 0.0021 4.5E-08 70.7 13.3 99 242-347 99-249 (561)
235 TIGR01377 soxA_mon sarcosine o 97.3 0.0091 2E-07 62.0 17.3 54 281-341 145-199 (380)
236 COG1635 THI4 Ribulose 1,5-bisp 97.3 0.0047 1E-07 57.7 12.9 165 241-405 30-257 (262)
237 PRK06996 hypothetical protein; 97.3 0.0018 4E-08 67.9 11.9 98 241-341 11-173 (398)
238 PRK05732 2-octaprenyl-6-methox 97.3 0.0025 5.5E-08 66.6 12.8 97 242-344 4-171 (395)
239 PRK06847 hypothetical protein; 97.3 0.0021 4.5E-08 66.8 11.9 34 89-122 5-38 (375)
240 KOG2495|consensus 97.3 0.00095 2.1E-08 68.0 8.7 107 240-347 54-175 (491)
241 TIGR02028 ChlP geranylgeranyl 97.3 0.0036 7.8E-08 65.7 13.5 100 243-343 2-161 (398)
242 TIGR03219 salicylate_mono sali 97.3 0.0025 5.5E-08 67.2 12.4 95 243-343 2-160 (414)
243 PRK10157 putative oxidoreducta 97.3 0.0021 4.7E-08 68.1 11.8 38 88-125 5-42 (428)
244 PRK11445 putative oxidoreducta 97.3 0.0038 8.2E-08 64.4 13.3 97 243-344 3-159 (351)
245 TIGR01372 soxA sarcosine oxida 97.3 0.0029 6.4E-08 73.9 13.8 103 241-345 163-289 (985)
246 COG0644 FixC Dehydrogenases (f 97.3 0.0031 6.7E-08 66.2 12.7 96 242-342 4-152 (396)
247 PF01134 GIDA: Glucose inhibit 97.3 0.0014 3.1E-08 67.4 9.7 34 90-123 1-35 (392)
248 KOG1336|consensus 97.2 0.0012 2.6E-08 68.2 9.0 97 241-345 74-184 (478)
249 PRK10015 oxidoreductase; Provi 97.2 0.0024 5.2E-08 67.7 11.5 37 89-125 6-42 (429)
250 PRK14727 putative mercuric red 97.2 0.0038 8.2E-08 67.3 13.2 36 237-272 12-47 (479)
251 TIGR02023 BchP-ChlP geranylger 97.2 0.0032 7E-08 65.8 12.3 32 89-120 1-32 (388)
252 PF05834 Lycopene_cycl: Lycope 97.2 0.0035 7.5E-08 65.3 12.4 95 243-343 1-143 (374)
253 TIGR01989 COQ6 Ubiquinone bios 97.2 0.0036 7.7E-08 66.6 12.4 98 243-345 2-186 (437)
254 TIGR01350 lipoamide_DH dihydro 97.2 0.0031 6.6E-08 67.6 12.0 93 89-221 171-271 (461)
255 PLN02546 glutathione reductase 97.2 0.0028 6.1E-08 69.2 11.5 30 243-272 81-110 (558)
256 PF12831 FAD_oxidored: FAD dep 97.2 0.0006 1.3E-08 72.3 6.0 38 90-127 1-38 (428)
257 TIGR01320 mal_quin_oxido malat 97.2 0.019 4.1E-07 61.8 17.5 63 280-342 177-240 (483)
258 PLN00093 geranylgeranyl diphos 97.2 0.0076 1.6E-07 64.2 14.4 105 238-343 36-200 (450)
259 COG0493 GltD NADPH-dependent g 97.1 0.0005 1.1E-08 72.7 4.9 115 204-341 92-219 (457)
260 PRK12771 putative glutamate sy 97.1 0.0013 2.8E-08 72.3 8.4 88 240-343 136-235 (564)
261 PLN02697 lycopene epsilon cycl 97.1 0.0021 4.6E-08 69.5 9.7 34 88-121 108-141 (529)
262 TIGR02028 ChlP geranylgeranyl 97.1 0.0035 7.6E-08 65.8 11.2 34 89-122 1-34 (398)
263 PRK06567 putative bifunctional 97.1 0.0012 2.7E-08 74.8 8.1 34 239-272 381-414 (1028)
264 PF00890 FAD_binding_2: FAD bi 97.1 0.0075 1.6E-07 63.6 13.7 58 285-343 145-204 (417)
265 PRK13984 putative oxidoreducta 97.1 0.0012 2.6E-08 73.3 7.9 88 240-342 282-380 (604)
266 PTZ00058 glutathione reductase 97.1 0.0054 1.2E-07 67.0 12.8 30 243-272 50-79 (561)
267 TIGR02053 MerA mercuric reduct 97.1 0.0039 8.5E-08 66.8 11.6 93 89-221 167-268 (463)
268 PLN02985 squalene monooxygenas 97.1 0.0071 1.5E-07 65.6 13.6 32 241-272 43-74 (514)
269 TIGR03385 CoA_CoA_reduc CoA-di 97.1 0.0079 1.7E-07 63.7 13.7 108 71-221 124-235 (427)
270 PRK05257 malate:quinone oxidor 97.1 0.043 9.4E-07 59.2 19.4 62 281-342 183-246 (494)
271 PF13454 NAD_binding_9: FAD-NA 97.1 0.0083 1.8E-07 54.2 11.8 41 294-340 113-155 (156)
272 TIGR03329 Phn_aa_oxid putative 97.1 0.025 5.4E-07 60.6 17.4 54 280-341 182-236 (460)
273 PRK11259 solA N-methyltryptoph 97.1 0.029 6.3E-07 58.2 17.5 55 281-342 149-204 (376)
274 COG2509 Uncharacterized FAD-de 97.0 0.014 3.1E-07 60.2 14.3 82 259-345 149-233 (486)
275 PRK06481 fumarate reductase fl 97.0 0.0074 1.6E-07 65.4 13.3 100 242-343 62-253 (506)
276 PRK08294 phenol 2-monooxygenas 97.0 0.0084 1.8E-07 66.7 13.9 100 242-341 33-209 (634)
277 COG0029 NadB Aspartate oxidase 97.0 0.0087 1.9E-07 62.5 12.9 48 360-407 342-397 (518)
278 PRK11101 glpA sn-glycerol-3-ph 97.0 0.0087 1.9E-07 65.5 13.7 31 242-272 7-37 (546)
279 TIGR00136 gidA glucose-inhibit 97.0 0.0094 2E-07 64.9 13.2 95 243-342 2-154 (617)
280 PRK13977 myosin-cross-reactive 97.0 0.014 3E-07 63.1 14.4 95 251-347 192-298 (576)
281 COG0695 GrxC Glutaredoxin and 97.0 0.0024 5.1E-08 50.7 6.5 53 59-114 2-54 (80)
282 TIGR01789 lycopene_cycl lycope 97.0 0.0036 7.8E-08 65.0 9.6 91 243-343 1-139 (370)
283 TIGR00275 flavoprotein, HI0933 97.0 0.0034 7.3E-08 65.9 9.5 32 92-123 1-32 (400)
284 PTZ00062 glutaredoxin; Provisi 97.0 0.0018 3.8E-08 61.0 6.5 65 45-114 100-169 (204)
285 COG1249 Lpd Pyruvate/2-oxoglut 97.0 0.0054 1.2E-07 65.0 10.9 93 89-221 174-274 (454)
286 PRK12266 glpD glycerol-3-phosp 97.0 0.01 2.2E-07 64.4 13.3 50 291-341 165-215 (508)
287 PRK08401 L-aspartate oxidase; 97.0 0.0081 1.8E-07 64.4 12.5 33 89-121 2-34 (466)
288 PRK06327 dihydrolipoamide dehy 96.9 0.008 1.7E-07 64.7 12.1 93 89-221 184-286 (475)
289 PTZ00052 thioredoxin reductase 96.9 0.0029 6.3E-08 68.4 8.7 30 243-272 7-36 (499)
290 PRK08958 sdhA succinate dehydr 96.9 0.042 9.2E-07 60.7 17.9 35 89-123 8-42 (588)
291 TIGR00137 gid_trmFO tRNA:m(5)U 96.9 0.0025 5.5E-08 66.7 7.8 33 243-275 2-35 (433)
292 PF12831 FAD_oxidored: FAD dep 96.9 0.00099 2.1E-08 70.6 4.9 95 243-340 1-148 (428)
293 COG1635 THI4 Ribulose 1,5-bisp 96.9 0.0016 3.5E-08 60.7 5.4 41 86-126 28-68 (262)
294 PTZ00383 malate:quinone oxidor 96.9 0.078 1.7E-06 57.1 19.1 55 281-341 211-272 (497)
295 PLN02661 Putative thiazole syn 96.9 0.0055 1.2E-07 62.3 9.6 49 76-125 81-130 (357)
296 PF00070 Pyr_redox: Pyridine n 96.9 0.0084 1.8E-07 47.4 8.8 34 90-123 1-34 (80)
297 PF05834 Lycopene_cycl: Lycope 96.9 0.0051 1.1E-07 64.0 9.6 34 90-123 1-36 (374)
298 PF13450 NAD_binding_8: NAD(P) 96.8 0.0018 3.9E-08 49.6 4.6 34 93-126 1-34 (68)
299 PRK06292 dihydrolipoamide dehy 96.8 0.0095 2.1E-07 63.8 11.9 30 243-272 5-34 (460)
300 PF04820 Trp_halogenase: Trypt 96.8 0.0085 1.8E-07 64.0 11.3 55 284-344 157-213 (454)
301 TIGR01438 TGR thioredoxin and 96.8 0.013 2.7E-07 63.2 12.7 30 243-272 4-33 (484)
302 PRK07608 ubiquinone biosynthes 96.8 0.01 2.3E-07 61.8 11.7 35 89-123 6-40 (388)
303 TIGR01813 flavo_cyto_c flavocy 96.8 0.016 3.4E-07 61.7 12.9 30 243-272 1-31 (439)
304 PRK07121 hypothetical protein; 96.8 0.018 3.8E-07 62.3 13.5 31 242-272 21-51 (492)
305 PLN00128 Succinate dehydrogena 96.8 0.07 1.5E-06 59.4 18.4 36 88-123 50-85 (635)
306 PRK01747 mnmC bifunctional tRN 96.8 0.014 3.1E-07 65.4 12.9 31 242-272 261-291 (662)
307 KOG0404|consensus 96.8 0.0095 2.1E-07 55.7 9.3 99 241-346 8-128 (322)
308 PLN00093 geranylgeranyl diphos 96.7 0.011 2.5E-07 62.9 11.4 34 89-122 40-73 (450)
309 PRK08274 tricarballylate dehyd 96.7 0.02 4.4E-07 61.4 13.5 30 243-272 6-35 (466)
310 PF01946 Thi4: Thi4 family; PD 96.6 0.046 1E-06 51.4 13.2 104 242-345 18-168 (230)
311 PLN02927 antheraxanthin epoxid 96.6 0.025 5.5E-07 62.6 13.4 34 239-272 79-112 (668)
312 TIGR02190 GlrX-dom Glutaredoxi 96.6 0.0029 6.3E-08 50.0 4.6 37 55-92 5-41 (79)
313 PRK13369 glycerol-3-phosphate 96.6 0.029 6.3E-07 60.8 13.8 31 242-272 7-37 (502)
314 PRK06184 hypothetical protein; 96.6 0.017 3.8E-07 62.5 12.1 35 89-123 4-38 (502)
315 TIGR01423 trypano_reduc trypan 96.6 0.013 2.8E-07 63.1 10.8 93 89-221 188-290 (486)
316 cd03419 GRX_GRXh_1_2_like Glut 96.6 0.0094 2E-07 47.1 7.4 61 59-121 1-62 (82)
317 PRK06834 hypothetical protein; 96.6 0.021 4.5E-07 61.7 12.2 34 89-122 4-37 (488)
318 PRK13339 malate:quinone oxidor 96.5 0.1 2.2E-06 56.1 16.9 62 281-342 184-247 (497)
319 PF06039 Mqo: Malate:quinone o 96.5 0.033 7.2E-07 58.0 12.5 89 290-381 190-290 (488)
320 COG0446 HcaD Uncharacterized N 96.5 0.017 3.7E-07 60.4 10.9 95 88-221 136-239 (415)
321 COG0578 GlpA Glycerol-3-phosph 96.5 0.08 1.7E-06 56.8 15.2 59 281-340 164-223 (532)
322 PRK07190 hypothetical protein; 96.5 0.021 4.5E-07 61.6 11.1 34 89-122 6-39 (487)
323 COG3380 Predicted NAD/FAD-depe 96.4 0.016 3.6E-07 55.8 8.7 99 243-347 3-165 (331)
324 COG3634 AhpF Alkyl hydroperoxi 96.4 0.0086 1.9E-07 59.5 7.0 97 240-341 210-324 (520)
325 PRK08244 hypothetical protein; 96.4 0.017 3.6E-07 62.6 9.9 34 89-122 3-36 (493)
326 PRK06452 sdhA succinate dehydr 96.4 0.048 1E-06 60.0 13.6 50 290-340 145-196 (566)
327 PRK07846 mycothione reductase; 96.4 0.023 4.9E-07 60.7 10.8 92 89-221 167-264 (451)
328 TIGR01373 soxB sarcosine oxida 96.4 0.2 4.3E-06 52.7 17.8 53 282-340 184-238 (407)
329 PRK10329 glutaredoxin-like pro 96.4 0.0084 1.8E-07 47.6 5.7 33 59-92 2-34 (81)
330 TIGR01811 sdhA_Bsu succinate d 96.4 0.043 9.3E-07 60.8 13.1 30 244-273 1-31 (603)
331 TIGR01789 lycopene_cycl lycope 96.3 0.027 5.9E-07 58.5 10.9 35 90-124 1-37 (370)
332 PF13450 NAD_binding_8: NAD(P) 96.3 0.0061 1.3E-07 46.7 4.5 31 246-276 1-32 (68)
333 TIGR01812 sdhA_frdA_Gneg succi 96.3 0.047 1E-06 60.1 13.3 30 243-272 1-30 (566)
334 COG0445 GidA Flavin-dependent 96.3 0.011 2.4E-07 62.4 7.6 94 242-340 5-156 (621)
335 PRK08275 putative oxidoreducta 96.3 0.056 1.2E-06 59.4 13.5 59 284-342 140-200 (554)
336 PRK01438 murD UDP-N-acetylmura 96.3 0.03 6.5E-07 60.3 11.1 76 89-221 17-92 (480)
337 PRK10638 glutaredoxin 3; Provi 96.2 0.017 3.7E-07 46.0 6.7 51 59-114 3-53 (83)
338 cd03029 GRX_hybridPRX5 Glutare 96.2 0.0071 1.5E-07 46.7 4.2 33 59-92 2-34 (72)
339 cd03027 GRX_DEP Glutaredoxin ( 96.2 0.021 4.4E-07 44.2 6.8 50 59-113 2-51 (73)
340 PRK07573 sdhA succinate dehydr 96.2 0.067 1.4E-06 59.7 13.4 50 290-340 179-230 (640)
341 PRK06854 adenylylsulfate reduc 96.1 0.074 1.6E-06 59.0 13.3 31 242-272 12-44 (608)
342 PF01946 Thi4: Thi4 family; PD 96.1 0.0069 1.5E-07 56.8 4.2 40 87-126 16-55 (230)
343 PRK09077 L-aspartate oxidase; 96.0 0.25 5.4E-06 54.0 16.9 34 89-123 9-42 (536)
344 PTZ00153 lipoamide dehydrogena 96.0 0.048 1E-06 60.7 11.3 34 90-123 314-347 (659)
345 PRK06263 sdhA succinate dehydr 96.0 0.086 1.9E-06 57.8 13.2 55 287-341 140-196 (543)
346 TIGR00551 nadB L-aspartate oxi 96.0 0.086 1.9E-06 56.9 13.0 54 287-343 134-190 (488)
347 PRK09078 sdhA succinate dehydr 96.0 0.089 1.9E-06 58.3 13.3 54 289-342 157-212 (598)
348 PF01494 FAD_binding_3: FAD bi 96.0 0.011 2.4E-07 60.2 5.7 36 89-124 2-37 (356)
349 PRK08255 salicylyl-CoA 5-hydro 95.9 0.021 4.6E-07 65.0 8.4 34 89-122 1-36 (765)
350 TIGR03452 mycothione_red mycot 95.9 0.051 1.1E-06 58.1 10.9 92 89-221 170-267 (452)
351 cd03418 GRX_GRXb_1_3_like Glut 95.9 0.029 6.3E-07 43.4 6.7 47 59-110 1-47 (75)
352 PTZ00139 Succinate dehydrogena 95.9 0.098 2.1E-06 58.1 13.1 52 290-341 175-228 (617)
353 TIGR02183 GRXA Glutaredoxin, G 95.9 0.032 6.9E-07 44.8 6.9 36 60-96 2-40 (86)
354 PRK06175 L-aspartate oxidase; 95.9 0.085 1.9E-06 56.0 12.1 54 286-342 133-189 (433)
355 TIGR02180 GRX_euk Glutaredoxin 95.8 0.023 5E-07 45.0 5.9 50 60-111 1-52 (84)
356 PRK07803 sdhA succinate dehydr 95.8 0.12 2.6E-06 57.6 13.5 30 243-272 10-39 (626)
357 PLN02464 glycerol-3-phosphate 95.8 0.13 2.8E-06 57.2 13.8 31 242-272 72-102 (627)
358 PRK05335 tRNA (uracil-5-)-meth 95.8 0.012 2.6E-07 61.4 5.3 34 242-275 3-37 (436)
359 PRK08401 L-aspartate oxidase; 95.8 0.098 2.1E-06 56.1 12.3 31 242-272 2-32 (466)
360 COG1251 NirB NAD(P)H-nitrite r 95.8 0.044 9.6E-07 59.9 9.3 99 241-347 3-118 (793)
361 cd02066 GRX_family Glutaredoxi 95.8 0.026 5.6E-07 42.8 5.7 58 59-121 1-59 (72)
362 PRK05945 sdhA succinate dehydr 95.7 0.11 2.3E-06 57.4 12.7 55 287-342 141-197 (575)
363 PTZ00367 squalene epoxidase; P 95.7 0.085 1.8E-06 57.8 11.5 31 242-272 34-64 (567)
364 PF00462 Glutaredoxin: Glutare 95.7 0.013 2.9E-07 43.3 3.7 45 60-109 1-45 (60)
365 PRK07804 L-aspartate oxidase; 95.7 0.14 3E-06 56.0 13.0 31 242-272 17-47 (541)
366 KOG1298|consensus 95.6 0.045 9.8E-07 55.3 8.2 31 242-272 46-76 (509)
367 COG4529 Uncharacterized protei 95.6 0.14 3E-06 53.7 12.1 34 242-275 2-39 (474)
368 COG3380 Predicted NAD/FAD-depe 95.6 0.016 3.5E-07 55.9 4.5 37 90-126 3-39 (331)
369 PRK07057 sdhA succinate dehydr 95.5 0.19 4E-06 55.7 13.6 31 242-272 13-43 (591)
370 PRK06069 sdhA succinate dehydr 95.5 0.16 3.5E-06 56.1 13.0 30 243-272 7-39 (577)
371 PRK08255 salicylyl-CoA 5-hydro 95.5 0.032 6.9E-07 63.6 7.7 32 243-274 2-36 (765)
372 KOG0405|consensus 95.5 0.16 3.4E-06 50.8 11.3 70 288-366 117-187 (478)
373 PRK08641 sdhA succinate dehydr 95.5 0.21 4.5E-06 55.2 13.8 31 242-272 4-34 (589)
374 KOG2614|consensus 95.5 0.099 2.1E-06 53.6 10.0 31 242-272 3-33 (420)
375 PRK08626 fumarate reductase fl 95.4 0.18 4E-06 56.4 13.2 31 242-272 6-36 (657)
376 PLN02815 L-aspartate oxidase 95.4 0.15 3.4E-06 56.2 12.3 46 294-339 169-219 (594)
377 PRK12835 3-ketosteroid-delta-1 95.4 0.22 4.8E-06 55.0 13.5 48 292-341 224-274 (584)
378 KOG2311|consensus 95.3 0.088 1.9E-06 54.7 9.1 31 242-272 29-59 (679)
379 TIGR02194 GlrX_NrdH Glutaredox 95.3 0.055 1.2E-06 41.7 6.0 55 60-119 1-56 (72)
380 PF13434 K_oxygenase: L-lysine 95.2 0.1 2.2E-06 53.4 9.6 104 243-347 4-164 (341)
381 PRK06753 hypothetical protein; 95.1 0.024 5.3E-07 58.7 4.5 34 90-123 2-35 (373)
382 PRK11200 grxA glutaredoxin 1; 95.0 0.041 8.8E-07 44.0 4.8 36 59-97 2-42 (85)
383 PRK07364 2-octaprenyl-6-methox 95.0 0.022 4.8E-07 60.0 4.1 36 88-123 18-53 (415)
384 COG1233 Phytoene dehydrogenase 95.0 0.025 5.5E-07 61.0 4.5 55 281-340 224-279 (487)
385 PRK11883 protoporphyrinogen ox 95.0 0.025 5.3E-07 60.2 4.4 38 90-127 2-41 (451)
386 TIGR01176 fum_red_Fp fumarate 94.9 0.36 7.7E-06 53.3 13.3 46 294-340 146-193 (580)
387 PRK09231 fumarate reductase fl 94.9 0.37 8.1E-06 53.2 13.5 46 294-340 147-194 (582)
388 PRK07045 putative monooxygenas 94.9 0.033 7.2E-07 58.1 4.9 36 88-123 5-40 (388)
389 PRK14106 murD UDP-N-acetylmura 94.8 0.073 1.6E-06 56.8 7.5 79 241-347 5-85 (450)
390 KOG1335|consensus 94.8 0.17 3.8E-06 51.2 9.2 94 88-221 211-316 (506)
391 PRK08205 sdhA succinate dehydr 94.7 0.42 9.1E-06 52.8 13.3 58 285-342 144-206 (583)
392 PRK12843 putative FAD-binding 94.7 0.41 8.8E-06 52.9 13.0 52 289-343 229-283 (578)
393 PRK09126 hypothetical protein; 94.6 0.032 7E-07 58.2 4.2 34 89-122 4-37 (392)
394 PF00890 FAD_binding_2: FAD bi 94.6 0.032 7E-07 58.8 4.2 35 90-124 1-35 (417)
395 TIGR02181 GRX_bact Glutaredoxi 94.6 0.045 9.8E-07 42.9 4.0 47 60-111 1-47 (79)
396 PRK08773 2-octaprenyl-3-methyl 94.6 0.038 8.1E-07 57.8 4.4 34 89-122 7-40 (392)
397 PRK08071 L-aspartate oxidase; 94.5 0.34 7.4E-06 52.6 11.9 94 243-339 5-187 (510)
398 PRK08849 2-octaprenyl-3-methyl 94.5 0.036 7.7E-07 57.9 4.1 33 89-121 4-36 (384)
399 PRK07233 hypothetical protein; 94.5 0.04 8.8E-07 58.2 4.4 55 281-341 198-253 (434)
400 KOG0029|consensus 94.4 0.042 9E-07 59.1 4.4 39 89-127 16-54 (501)
401 KOG2820|consensus 94.4 0.44 9.5E-06 47.7 11.0 31 242-272 8-38 (399)
402 PRK07395 L-aspartate oxidase; 94.4 0.27 5.9E-06 53.9 10.7 94 243-339 11-194 (553)
403 TIGR01984 UbiH 2-polyprenyl-6- 94.4 0.042 9E-07 57.1 4.2 34 90-123 1-35 (382)
404 PRK08020 ubiF 2-octaprenyl-3-m 94.3 0.043 9.3E-07 57.3 4.2 35 88-122 5-39 (391)
405 PRK07588 hypothetical protein; 94.3 0.041 8.9E-07 57.5 4.0 34 90-123 2-35 (391)
406 PRK11445 putative oxidoreducta 94.3 0.044 9.5E-07 56.5 4.2 33 89-122 2-34 (351)
407 PRK08013 oxidoreductase; Provi 94.3 0.04 8.6E-07 57.9 3.9 34 89-122 4-37 (400)
408 PRK07538 hypothetical protein; 94.3 0.045 9.8E-07 57.7 4.2 35 89-123 1-35 (413)
409 PRK05714 2-octaprenyl-3-methyl 94.2 0.041 9E-07 57.8 3.9 33 89-121 3-35 (405)
410 TIGR01988 Ubi-OHases Ubiquinon 94.2 0.044 9.6E-07 56.8 4.1 34 90-123 1-34 (385)
411 PRK08163 salicylate hydroxylas 94.2 0.051 1.1E-06 56.8 4.6 35 89-123 5-39 (396)
412 COG3349 Uncharacterized conser 94.1 0.051 1.1E-06 57.3 4.2 39 90-128 2-40 (485)
413 PRK07236 hypothetical protein; 94.1 0.051 1.1E-06 56.7 4.3 34 89-122 7-40 (386)
414 TIGR00031 UDP-GALP_mutase UDP- 94.1 0.056 1.2E-06 56.1 4.4 38 89-126 2-39 (377)
415 KOG0029|consensus 94.1 0.065 1.4E-06 57.6 5.1 36 240-275 14-50 (501)
416 PRK06617 2-octaprenyl-6-methox 94.1 0.046 9.9E-07 56.8 3.8 33 89-121 2-34 (374)
417 TIGR02360 pbenz_hydroxyl 4-hyd 94.1 0.053 1.1E-06 56.7 4.3 34 89-122 3-36 (390)
418 KOG4716|consensus 94.1 0.77 1.7E-05 45.9 11.8 31 242-272 20-50 (503)
419 PRK11883 protoporphyrinogen ox 94.1 0.065 1.4E-06 57.0 5.1 35 242-276 1-38 (451)
420 PRK07233 hypothetical protein; 94.1 0.066 1.4E-06 56.6 5.1 34 243-276 1-35 (434)
421 COG0654 UbiH 2-polyprenyl-6-me 94.1 0.045 9.8E-07 57.2 3.7 32 89-120 3-34 (387)
422 PLN02268 probable polyamine ox 94.1 0.058 1.3E-06 57.3 4.6 38 90-127 2-39 (435)
423 KOG1800|consensus 94.1 0.19 4.2E-06 50.9 7.8 85 242-342 21-120 (468)
424 PRK06481 fumarate reductase fl 94.0 0.052 1.1E-06 58.9 4.2 38 88-125 61-98 (506)
425 TIGR01813 flavo_cyto_c flavocy 94.0 0.057 1.2E-06 57.4 4.5 35 90-124 1-36 (439)
426 PRK06854 adenylylsulfate reduc 94.0 0.058 1.3E-06 59.8 4.7 39 366-404 389-428 (608)
427 PRK12845 3-ketosteroid-delta-1 94.0 0.65 1.4E-05 51.1 12.7 94 243-339 18-275 (564)
428 COG1232 HemY Protoporphyrinoge 94.0 0.055 1.2E-06 57.0 4.2 37 90-126 2-40 (444)
429 PRK12409 D-amino acid dehydrog 94.0 0.065 1.4E-06 56.4 4.8 32 242-273 2-34 (410)
430 PF01266 DAO: FAD dependent ox 94.0 0.066 1.4E-06 54.5 4.7 31 243-273 1-31 (358)
431 TIGR00562 proto_IX_ox protopor 94.0 0.06 1.3E-06 57.6 4.6 39 89-127 3-45 (462)
432 PRK08243 4-hydroxybenzoate 3-m 93.9 0.059 1.3E-06 56.4 4.3 34 89-122 3-36 (392)
433 PRK07208 hypothetical protein; 93.9 0.06 1.3E-06 58.0 4.5 38 89-126 5-42 (479)
434 KOG0685|consensus 93.9 0.071 1.5E-06 55.5 4.6 44 90-133 23-67 (498)
435 PRK08274 tricarballylate dehyd 93.9 0.056 1.2E-06 58.0 4.1 34 89-122 5-38 (466)
436 PRK07494 2-octaprenyl-6-methox 93.9 0.052 1.1E-06 56.6 3.8 34 89-122 8-41 (388)
437 PRK06475 salicylate hydroxylas 93.8 0.071 1.5E-06 56.0 4.7 34 90-123 4-37 (400)
438 PRK06185 hypothetical protein; 93.8 0.06 1.3E-06 56.5 4.0 35 88-122 6-40 (407)
439 COG0445 GidA Flavin-dependent 93.7 0.18 3.9E-06 53.6 7.2 33 89-121 5-37 (621)
440 TIGR02734 crtI_fam phytoene de 93.7 0.063 1.4E-06 58.2 4.2 55 281-341 219-275 (502)
441 PRK07121 hypothetical protein; 93.7 0.07 1.5E-06 57.7 4.5 36 89-124 21-56 (492)
442 TIGR02731 phytoene_desat phyto 93.7 0.07 1.5E-06 57.0 4.4 37 90-126 1-37 (453)
443 TIGR02485 CobZ_N-term precorri 93.7 0.53 1.2E-05 49.9 11.1 27 246-272 1-27 (432)
444 TIGR02733 desat_CrtD C-3',4' d 93.7 0.079 1.7E-06 57.2 4.8 60 281-341 232-293 (492)
445 PRK05868 hypothetical protein; 93.7 0.076 1.6E-06 55.2 4.5 35 89-123 2-36 (372)
446 PF13241 NAD_binding_7: Putati 93.7 0.058 1.2E-06 44.9 2.9 33 240-272 6-38 (103)
447 PRK07333 2-octaprenyl-6-methox 93.7 0.062 1.3E-06 56.3 3.9 34 89-122 2-37 (403)
448 PLN02576 protoporphyrinogen ox 93.6 0.07 1.5E-06 57.7 4.3 39 89-127 13-52 (496)
449 TIGR03219 salicylate_mono sali 93.6 0.081 1.7E-06 55.8 4.6 35 89-123 1-36 (414)
450 KOG2404|consensus 93.5 0.51 1.1E-05 46.9 9.5 46 295-342 159-206 (477)
451 PRK05732 2-octaprenyl-6-methox 93.5 0.062 1.4E-06 56.1 3.6 32 89-120 4-38 (395)
452 PTZ00306 NADH-dependent fumara 93.5 0.84 1.8E-05 54.7 13.3 100 238-339 406-617 (1167)
453 PF02737 3HCDH_N: 3-hydroxyacy 93.5 0.073 1.6E-06 49.3 3.6 34 243-276 1-35 (180)
454 COG1233 Phytoene dehydrogenase 93.5 0.09 1.9E-06 56.7 4.8 34 242-275 4-38 (487)
455 PRK12759 bifunctional gluaredo 93.5 0.078 1.7E-06 55.7 4.2 33 59-92 3-35 (410)
456 PRK11259 solA N-methyltryptoph 93.4 0.09 2E-06 54.5 4.6 31 242-272 4-34 (376)
457 PLN02268 probable polyamine ox 93.4 0.1 2.2E-06 55.4 5.1 35 242-276 1-36 (435)
458 PRK08275 putative oxidoreducta 93.4 0.087 1.9E-06 57.8 4.7 45 360-404 357-401 (554)
459 TIGR01377 soxA_mon sarcosine o 93.4 0.092 2E-06 54.5 4.6 30 243-272 2-31 (380)
460 KOG2415|consensus 93.4 0.078 1.7E-06 54.1 3.8 41 85-125 73-119 (621)
461 TIGR01989 COQ6 Ubiquinone bios 93.4 0.072 1.6E-06 56.6 3.8 32 90-121 2-37 (437)
462 COG3349 Uncharacterized conser 93.3 0.11 2.3E-06 55.0 4.8 35 242-276 1-36 (485)
463 PRK08850 2-octaprenyl-6-methox 93.3 0.07 1.5E-06 56.1 3.5 32 89-120 5-36 (405)
464 PRK13800 putative oxidoreducta 93.2 0.091 2E-06 61.1 4.6 47 359-405 361-407 (897)
465 PRK06719 precorrin-2 dehydroge 93.2 0.13 2.7E-06 46.5 4.6 32 240-271 12-43 (157)
466 PRK07208 hypothetical protein; 93.2 0.13 2.8E-06 55.4 5.4 36 241-276 4-40 (479)
467 TIGR02733 desat_CrtD C-3',4' d 93.1 0.12 2.6E-06 55.8 5.1 34 242-275 2-36 (492)
468 PRK06126 hypothetical protein; 93.1 0.099 2.1E-06 57.3 4.4 34 89-122 8-41 (545)
469 PRK07512 L-aspartate oxidase; 93.0 0.75 1.6E-05 50.0 11.0 100 236-339 4-194 (513)
470 TIGR02730 carot_isom carotene 92.9 0.1 2.3E-06 56.4 4.3 55 281-341 229-285 (493)
471 KOG1346|consensus 92.8 0.13 2.8E-06 52.5 4.4 46 293-346 269-315 (659)
472 PRK12837 3-ketosteroid-delta-1 92.8 0.12 2.5E-06 56.3 4.4 37 88-125 7-43 (513)
473 COG1004 Ugd Predicted UDP-gluc 92.7 0.33 7.1E-06 49.7 7.1 80 243-344 2-90 (414)
474 TIGR01812 sdhA_frdA_Gneg succi 92.7 0.1 2.3E-06 57.4 4.0 33 90-122 1-33 (566)
475 PLN02985 squalene monooxygenas 92.7 0.12 2.7E-06 56.0 4.4 35 87-121 42-76 (514)
476 PRK11728 hydroxyglutarate oxid 92.6 0.14 3.1E-06 53.5 4.7 33 243-275 4-39 (393)
477 TIGR03364 HpnW_proposed FAD de 92.6 0.14 3.1E-06 52.8 4.7 30 243-272 2-31 (365)
478 PRK07057 sdhA succinate dehydr 92.6 0.11 2.4E-06 57.5 4.0 34 89-122 13-46 (591)
479 PRK00711 D-amino acid dehydrog 92.6 0.14 3E-06 53.9 4.6 30 243-272 2-31 (416)
480 PRK08641 sdhA succinate dehydr 92.6 0.11 2.5E-06 57.3 4.1 34 89-122 4-37 (589)
481 PRK07803 sdhA succinate dehydr 92.6 0.12 2.6E-06 57.6 4.2 35 88-122 8-42 (626)
482 PTZ00139 Succinate dehydrogena 92.6 0.13 2.8E-06 57.2 4.4 36 88-123 29-64 (617)
483 TIGR02734 crtI_fam phytoene de 92.5 0.13 2.9E-06 55.6 4.5 32 244-275 1-33 (502)
484 PRK12834 putative FAD-binding 92.5 0.14 2.9E-06 56.3 4.5 33 89-121 5-37 (549)
485 PRK07804 L-aspartate oxidase; 92.5 0.12 2.6E-06 56.6 4.1 36 88-123 16-51 (541)
486 PRK06452 sdhA succinate dehydr 92.5 0.12 2.6E-06 56.9 4.0 34 89-122 6-39 (566)
487 PRK12839 hypothetical protein; 92.5 1.8 4E-05 47.7 13.2 97 243-339 10-273 (572)
488 PRK12266 glpD glycerol-3-phosp 92.4 0.14 3E-06 55.6 4.4 34 89-122 7-40 (508)
489 PRK05335 tRNA (uracil-5-)-meth 92.4 0.14 3E-06 53.6 4.2 34 89-122 3-36 (436)
490 TIGR00562 proto_IX_ox protopor 92.4 0.17 3.7E-06 54.1 5.0 34 242-275 3-41 (462)
491 PRK12835 3-ketosteroid-delta-1 92.3 0.14 3E-06 56.5 4.3 37 89-125 12-48 (584)
492 PRK06718 precorrin-2 dehydroge 92.3 0.19 4.2E-06 47.3 4.7 33 240-272 9-41 (202)
493 COG0665 DadA Glycine/D-amino a 92.3 0.18 3.8E-06 52.4 4.9 32 241-272 4-35 (387)
494 TIGR01470 cysG_Nterm siroheme 92.3 0.19 4.2E-06 47.5 4.6 33 240-272 8-40 (205)
495 PF00732 GMC_oxred_N: GMC oxid 92.2 0.2 4.3E-06 50.0 5.1 64 283-347 195-263 (296)
496 TIGR02731 phytoene_desat phyto 92.2 0.18 4E-06 53.8 5.0 33 243-275 1-34 (453)
497 PRK08132 FAD-dependent oxidore 92.2 0.12 2.7E-06 56.6 3.8 36 88-123 23-58 (547)
498 TIGR02061 aprA adenosine phosp 92.2 0.14 3E-06 56.7 4.1 33 90-122 1-37 (614)
499 PRK09078 sdhA succinate dehydr 92.1 0.14 2.9E-06 56.8 4.0 35 88-122 12-46 (598)
500 KOG3851|consensus 92.1 0.09 2E-06 51.9 2.2 98 242-347 40-150 (446)
No 1
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=4.5e-69 Score=559.53 Aligned_cols=418 Identities=23% Similarity=0.296 Sum_probs=360.0
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc-------cccccccccccccchhhccc-cccc-ccccccCHH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF-------RKKRRLYYPVAMSDLELEQD-STSA-LNVTIRNWN 158 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~-------~~~~l~~~~~~i~~~~~~~~-~~~~-~~~~~~~~~ 158 (535)
.+|++|||+||+|..+|.++...+.+|.|+|+...+++ .|.+.+.+...+........ .+.. .....+||.
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~~ 83 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDFE 83 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCHH
Confidence 47899999999999999999888888999999964332 22222222111111111111 1111 112268999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce---eEEEcceEEEeeCceecC-CCCC---Cceech
Q psy14461 159 AATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN---RSVTGFNFLLAVERRCLP-EPRN---SALISA 231 (535)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~---~~~~~d~lViATGs~p~~-~i~G---~~v~~~ 231 (535)
++++++++....+...+..+++..+|+++.|+++|.++++|.+.+ +++++|++||||||+|.. +++| ..++++
T Consensus 84 ~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~s 163 (454)
T COG1249 84 KLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDS 163 (454)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEec
Confidence 999999998888888899999999999999999999999999987 799999999999999999 8777 558899
Q ss_pred hhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS 309 (535)
Q Consensus 232 ~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~ 309 (535)
++.+.+.+.|++++|||||++|+|+|..|+++|.+||++++ ++++|.+|+++++.+.+.|++.|+++ +++.+++++..
T Consensus 164 ~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~ 243 (454)
T COG1249 164 SDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKK 243 (454)
T ss_pred hhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEec
Confidence 99887779999999999999999999999999999999999 99999999999999999999999999 99999999876
Q ss_pred CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461 310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA 389 (535)
Q Consensus 310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~ 389 (535)
+ +.+.++++ +|+..++++|.+++|+|++||++.|++++.|++++++|+|.||++++|++|+|||+|||+ ++++++
T Consensus 244 ~-~~v~v~~~---~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~-~~~~La 318 (454)
T COG1249 244 D-DGVLVTLE---DGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVI-GGPMLA 318 (454)
T ss_pred C-CeEEEEEe---cCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccC-CCcccH
Confidence 3 33777775 454337899999999999999999999999999999999999988888999999999999 888999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461 390 SMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469 (535)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (535)
|.|.+||++||+||++......++..+|+++|++|++|+||+||+||++++. ++++...++..+.++. ..
T Consensus 319 h~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~--~~~~~~~~f~~~~ra~-~~------- 388 (454)
T COG1249 319 HVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGI--DYKVGKFPFAANGRAI-TM------- 388 (454)
T ss_pred hHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCC--ceEEEEeecccchhHH-hc-------
Confidence 9999999999999998555677899999999999999999999999999966 6888888888776654 21
Q ss_pred hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
+++.||+|+++|++|++|||+|++|++|.|||++++++|++++|.+++.++
T Consensus 389 ---------------~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~ 439 (454)
T COG1249 389 ---------------GETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALT 439 (454)
T ss_pred ---------------cCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcC
Confidence 257899999999999999999999999999999999999999999999854
No 2
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=7.7e-63 Score=522.79 Aligned_cols=418 Identities=23% Similarity=0.340 Sum_probs=348.7
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccc----cccccchhhccccc--ccccccccCHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYY----PVAMSDLELEQDST--SALNVTIRNWNA 159 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~----~~~i~~~~~~~~~~--~~~~~~~~~~~~ 159 (535)
+||+|||+||+|+.+|+++...+.+|+|||++. +++.. +-+|.. +..+.......+.+ .......++|.+
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPE 81 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHH
Confidence 689999999999999999999999999999964 33221 112211 00000000011111 111122579999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC--CCCC-CceechhhHHh
Q psy14461 160 ATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP--EPRN-SALISADDLFR 236 (535)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~--~i~G-~~v~~~~~~~~ 236 (535)
+.++++++++++...+...+++.||+++.|++.+.++++|.+++..+.||+||||||++|+. ++|| +..+++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~~~~ 161 (450)
T TIGR01421 82 LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGKPSFPENIPGAELGTDSDGFFA 161 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCCCCCCCCCCCceeEcHHHhhC
Confidence 99999999999988888889999999999999998889998877789999999999999976 4788 65678899988
Q ss_pred ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE
Q psy14461 237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK 314 (535)
Q Consensus 237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~ 314 (535)
+...|++++|||||++|+|+|..|+++|.+||++++ +++++.+|+++.+.+++.|+++||++ +++.+++++.+.++.+
T Consensus 162 ~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~ 241 (450)
T TIGR01421 162 LEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKL 241 (450)
T ss_pred ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceE
Confidence 888899999999999999999999999999999999 99999999999999999999999999 9999999986533335
Q ss_pred EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHH
Q psy14461 315 GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAI 394 (535)
Q Consensus 315 ~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~ 394 (535)
.+++. +|+ .++++|.|++++|++||++.+.++..+++++++|+|.||+++||++|+|||+|||+ +.+.+++.|.+
T Consensus 242 ~v~~~---~g~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~-~~~~~~~~A~~ 316 (450)
T TIGR01421 242 VIHFE---DGK-SIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVV-GKVELTPVAIA 316 (450)
T ss_pred EEEEC---CCc-EEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecC-CCcccHHHHHH
Confidence 56663 552 37999999999999999998777889999999999999999999999999999999 88999999999
Q ss_pred HHHHHHHHHhCCC-CCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhc
Q psy14461 395 SARLIIERLYGMQ-DQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCL 473 (535)
Q Consensus 395 ~g~~aa~~i~g~~-~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (535)
||++||+||++.. ....++..+|+++|++|++|+||+||+||+++++.+.+.+...++.+..++. ..
T Consensus 317 ~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~-~~----------- 384 (450)
T TIGR01421 317 AGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAM-TS----------- 384 (450)
T ss_pred HHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHH-hc-----------
Confidence 9999999999754 3456788899999999999999999999998755445777766666544432 11
Q ss_pred cCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 474 KGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 474 ~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
+.+.||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus 385 -----------~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 435 (450)
T TIGR01421 385 -----------EKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNT 435 (450)
T ss_pred -----------CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence 257899999999999999999999999999999999999999999999864
No 3
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=7.6e-63 Score=524.69 Aligned_cols=417 Identities=22% Similarity=0.263 Sum_probs=345.5
Q ss_pred EEEEeeCCccHHHHHHHHHhhC-CCeEEEEecC--------Cccccc-------ccccccccccccchhhccccccc---
Q psy14461 89 LYLDRIGDEGILLEEELKRQTN-QRRDELQERG--------SHLSFR-------KKRRLYYPVAMSDLELEQDSTSA--- 149 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~-~~~V~lie~~--------~~~~~~-------~~~l~~~~~~i~~~~~~~~~~~~--- 149 (535)
+|++|||+|++|..+|++.... +.+|+|||++ ..+++. |.+.+.....+.....+...+..
T Consensus 4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~~~ 83 (486)
T TIGR01423 4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEFD 83 (486)
T ss_pred cCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCeecc
Confidence 6899999999999999999885 8999999984 233322 22222111111111111111111
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEeEEEEecCCEEEEce---------eEEEcceEEEeeCcee
Q psy14461 150 LNVTIRNWNAATKLIKRFCIRAKNDSMRELKA-LGIDIVRTAAAFTNPHTIKLSN---------RSVTGFNFLLAVERRC 219 (535)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~gV~~~~g~~~~~~~~~v~~~~---------~~~~~d~lViATGs~p 219 (535)
.....+||.++.+++++.+.+++..+...++. .||+++.|++.+.++++|.+.. .++.||+||||||++|
T Consensus 84 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs~p 163 (486)
T TIGR01423 84 RSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSWP 163 (486)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCCCC
Confidence 01346799999999999999998888888887 4999999999999999998852 4799999999999999
Q ss_pred cC-CCCC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhC---CCcEEEEEc-CcCCccCcHHHHHHHHHhhhc
Q psy14461 220 LP-EPRN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFL---GVPVTLVYS-RRLLKHFDQEMVRILLSSLTK 293 (535)
Q Consensus 220 ~~-~i~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~---g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~ 293 (535)
.. ++|| +.++++++++.+...|++++|||||++|+|+|..|.++ |.+||++++ +++++.+|+++.+.+.+.|++
T Consensus 164 ~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~ 243 (486)
T TIGR01423 164 QMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRA 243 (486)
T ss_pred CCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHHHH
Confidence 88 8999 77889999988888899999999999999999887665 999999999 999999999999999999999
Q ss_pred CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCC
Q psy14461 294 AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSV 372 (535)
Q Consensus 294 ~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~ 372 (535)
+||++ +++.+++++..+++...+++. +|+ ++++|.+++|+|++||++.++++.++++++++|+|.||+++||+.
T Consensus 244 ~GI~i~~~~~v~~i~~~~~~~~~v~~~---~g~--~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~ 318 (486)
T TIGR01423 244 NGINIMTNENPAKVTLNADGSKHVTFE---SGK--TLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNV 318 (486)
T ss_pred cCCEEEcCCEEEEEEEcCCceEEEEEc---CCC--EEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcCCC
Confidence 99999 999999998653333556663 566 799999999999999999887788899999999999999999999
Q ss_pred CCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEec
Q psy14461 373 GNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY 452 (535)
Q Consensus 373 ~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~ 452 (535)
|||||+|||+ +.+++++.|.+||++||+||++......++..+|+++|+.|++|+||+||+||++.+. ++.+....+
T Consensus 319 ~~IyA~GDv~-~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~~~--~~~~~~~~~ 395 (486)
T TIGR01423 319 PNIYAIGDVT-DRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFE--KVAVYESSF 395 (486)
T ss_pred CCEEEeeecC-CCcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhcCC--ceEEEEEee
Confidence 9999999999 8899999999999999999998654556777899999999999999999999998733 566665555
Q ss_pred CCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHH
Q psy14461 453 PTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAEL 532 (535)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l 532 (535)
..+.+.. +... .+.||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||
T Consensus 396 ~~~~~~~-~~~~---------------------~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl 453 (486)
T TIGR01423 396 TPLMHNI-SGSK---------------------YKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDF 453 (486)
T ss_pred Cchhhhh-ccCc---------------------cCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHH
Confidence 4433322 2110 23799999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy14461 533 DGT 535 (535)
Q Consensus 533 ~~~ 535 (535)
.++
T Consensus 454 ~~~ 456 (486)
T TIGR01423 454 YNT 456 (486)
T ss_pred hhc
Confidence 864
No 4
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=2.7e-62 Score=518.99 Aligned_cols=415 Identities=23% Similarity=0.318 Sum_probs=348.5
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---cccc----ccccccchhhccccccc-ccccccCHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLY----YPVAMSDLELEQDSTSA-LNVTIRNWNAA 160 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~----~~~~i~~~~~~~~~~~~-~~~~~~~~~~l 160 (535)
+|++|||+||+|+.+|+++...+.+|+|+|++ .+++... -+|. +.........+.+.+.. .....++|.++
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (446)
T TIGR01424 3 YDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKL 81 (446)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHH
Confidence 68999999999999999999999999999995 3433210 1221 10000011111122111 12346899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc--eeEEEcceEEEeeCceecC-CCCC-CceechhhHHh
Q psy14461 161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS--NRSVTGFNFLLAVERRCLP-EPRN-SALISADDLFR 236 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~--~~~~~~d~lViATGs~p~~-~i~G-~~v~~~~~~~~ 236 (535)
.+++++.+.++...++..+++.||+++.+++.+.+++++.+. +.++.||+||||||++|.. ++|| +..+++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~~ 161 (446)
T TIGR01424 82 LQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAFH 161 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhhc
Confidence 999999999998888889999999999999999988887773 3679999999999999988 8999 66678888888
Q ss_pred ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE
Q psy14461 237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK 314 (535)
Q Consensus 237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~ 314 (535)
+...+++++|||+|++|+|+|..|++.|.+|+++++ +.+++.+++++.+.+.+.|+++||++ +++++++++.. ++.+
T Consensus 162 l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~ 240 (446)
T TIGR01424 162 LPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKT-DDGL 240 (446)
T ss_pred ccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCeE
Confidence 888899999999999999999999999999999999 88899999999999999999999999 99999999865 3445
Q ss_pred EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHH
Q psy14461 315 GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAI 394 (535)
Q Consensus 315 ~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~ 394 (535)
.+++. +|+ ++++|.+++|+|++||++.++++..+++++++|+|.||+++||+.|+|||+|||+ +.+.+++.|.+
T Consensus 241 ~v~~~---~g~--~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~l~~~A~~ 314 (446)
T TIGR01424 241 KVTLS---HGE--EIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVT-DRINLTPVAIM 314 (446)
T ss_pred EEEEc---CCc--EeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccC-CCccchhHHHH
Confidence 56653 566 7999999999999999998777888999999999999999999999999999999 88899999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhcc
Q psy14461 395 SARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLK 474 (535)
Q Consensus 395 ~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (535)
||++||+||++....++++..+|+++|+.|++|+||+||+||++.++. ++.+....+....+.. ..
T Consensus 315 ~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~-~~~~~~~~~~~~~~~~-~~------------ 380 (446)
T TIGR01424 315 EATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTG-DILVYRAGFRPMKNTF-SG------------ 380 (446)
T ss_pred HHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCC-CEEEEEEecCchHhHh-hc------------
Confidence 999999999986555567788999999999999999999999988432 6777766665544332 11
Q ss_pred CCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 475 GGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 475 ~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
+.++||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus 381 ----------~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 431 (446)
T TIGR01424 381 ----------RQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDST 431 (446)
T ss_pred ----------CCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhc
Confidence 246899999999999999999999999999999999999999999999864
No 5
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=2.9e-62 Score=519.99 Aligned_cols=417 Identities=25% Similarity=0.359 Sum_probs=350.1
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---ccccc----ccccccchhhc-ccccc-cccccccCHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLY----YPVAMSDLELE-QDSTS-ALNVTIRNWNA 159 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~----~~~~i~~~~~~-~~~~~-~~~~~~~~~~~ 159 (535)
++++|||+||+|+.+|+++...+.+|+|||++. +++.. +-+|. +...+...... .+.+. ......++|.+
T Consensus 5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~-~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (450)
T PRK06116 5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAKR-LGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAK 83 (450)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc-hhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHH
Confidence 589999999999999999999999999999963 32211 01221 10001111111 00111 11234679999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCCC-CceechhhHHhc
Q psy14461 160 ATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPRN-SALISADDLFRL 237 (535)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~G-~~v~~~~~~~~~ 237 (535)
+.+++++.++++...+...+++.||+++.|++.++++++|++++.++.||+||||||++|.. ++|| +.++++++++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~~~ 163 (450)
T PRK06116 84 LIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGGRPSIPDIPGAEYGITSDGFFAL 163 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCCCCCCCCCcceeEchhHhhCc
Confidence 99999988888888888888899999999999999999999966789999999999999988 8999 778889999888
Q ss_pred cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE
Q psy14461 238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG 315 (535)
Q Consensus 238 ~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~ 315 (535)
...+++|+|||+|++|+|+|..|++.|.+||++++ +.+++.+++++.+.+.+.|+++||++ .++++++++.++++.+.
T Consensus 164 ~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~ 243 (450)
T PRK06116 164 EELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLT 243 (450)
T ss_pred cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEE
Confidence 88899999999999999999999999999999999 88899999999999999999999999 99999999875333356
Q ss_pred EEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHH
Q psy14461 316 VRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAIS 395 (535)
Q Consensus 316 v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~ 395 (535)
+++. +|+ ++++|.|++|+|++||++.+.++..+++++++|+|.||+++||++|+|||+|||+ +.+.+++.|++|
T Consensus 244 v~~~---~g~--~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~~~~~A~~~ 317 (450)
T PRK06116 244 LTLE---DGE--TLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVT-GRVELTPVAIAA 317 (450)
T ss_pred EEEc---CCc--EEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecC-CCcCcHHHHHHH
Confidence 6663 676 7999999999999999998766888999999999999999999999999999999 888999999999
Q ss_pred HHHHHHHHhCCCC-CCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhcc
Q psy14461 396 ARLIIERLYGMQD-QLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLK 474 (535)
Q Consensus 396 g~~aa~~i~g~~~-~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (535)
|++||+||++... ...++..+|+++|+.|++|+||+||+||++.++...+.+...++....+.. ..
T Consensus 318 g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~-~~------------ 384 (450)
T PRK06116 318 GRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTAL-TG------------ 384 (450)
T ss_pred HHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHH-hc------------
Confidence 9999999998654 456788999999999999999999999999855223777766665544432 11
Q ss_pred CCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 475 GGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 475 ~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
+.++||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus 385 ----------~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 435 (450)
T PRK06116 385 ----------HRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNT 435 (450)
T ss_pred ----------CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc
Confidence 257899999999999999999999999999999999999999999999864
No 6
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.7e-62 Score=527.45 Aligned_cols=416 Identities=24% Similarity=0.343 Sum_probs=349.6
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecC---------Cccc-------ccccccccccccccchhhccc--ccccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERG---------SHLS-------FRKKRRLYYPVAMSDLELEQD--STSAL 150 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~---------~~~~-------~~~~~l~~~~~~i~~~~~~~~--~~~~~ 150 (535)
+|++|||+|++|+.+|+++...+.+|+|||+. ..++ +.|.+.+.+...+........ +....
T Consensus 80 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~~ 159 (558)
T PLN02546 80 FDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKYE 159 (558)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcccC
Confidence 68999999999999999999999999999961 1222 222222222111111111111 11111
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCCC-Cce
Q psy14461 151 NVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPRN-SAL 228 (535)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~G-~~v 228 (535)
....+||.++.+++++.++++...+...+++.||+++.|++++++.++|.+++.++.||+||||||++|.. ++|| +.+
T Consensus 160 ~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs~p~~P~IpG~~~v 239 (558)
T PLN02546 160 TEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRPFIPDIPGIEHA 239 (558)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCCCCCCCCCCChhhc
Confidence 13468999999999999999988899999999999999999999999999877789999999999999998 8999 778
Q ss_pred echhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKV 306 (535)
Q Consensus 229 ~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i 306 (535)
+++++++.+...+++|+|||||++|+|+|..|+++|.+||++++ +.+++.+++++.+.+++.|+++||++ ++..++++
T Consensus 240 ~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i 319 (558)
T PLN02546 240 IDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAI 319 (558)
T ss_pred cCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEE
Confidence 89999998887899999999999999999999999999999999 89999999999999999999999999 99999999
Q ss_pred EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC
Q psy14461 307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP 386 (535)
Q Consensus 307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~ 386 (535)
....++.+.+.. .+++ ...+|.|++++|++||++++.++.++++++++|+|.||+++||++|+|||+|||+ +.+
T Consensus 320 ~~~~~g~v~v~~---~~g~--~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~-~~~ 393 (558)
T PLN02546 320 IKSADGSLSLKT---NKGT--VEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVT-DRI 393 (558)
T ss_pred EEcCCCEEEEEE---CCeE--EEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccC-CCc
Confidence 764334444443 2343 4558999999999999998767888999998999999999999999999999999 888
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcc
Q psy14461 387 NNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN 466 (535)
Q Consensus 387 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (535)
.+++.|.+||+++|+||++......++..+|+++|+.|++|+||+||+||++.++ ++++...++....+.+ ...
T Consensus 394 ~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~--~~~~~~~~~~~~~~~~-~~~--- 467 (558)
T PLN02546 394 NLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYG--DVDVFTANFRPLKATL-SGL--- 467 (558)
T ss_pred ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCC--CeEEEEEecccchhhh-hCC---
Confidence 9999999999999999998655456788899999999999999999999999865 6887777776544333 221
Q ss_pred hhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 467 FVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
.+.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus 468 -------------------~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~ 517 (558)
T PLN02546 468 -------------------PDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDAT 517 (558)
T ss_pred -------------------CCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence 36899999999999999999999999999999999999999999999764
No 7
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.9e-61 Score=519.01 Aligned_cols=420 Identities=21% Similarity=0.345 Sum_probs=342.5
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc-------cccccccccccccchhhcccccccccccccCHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF-------RKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAAT 161 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~-------~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 161 (535)
+|++|||+|++|+.+|++....+.+|+|||++. +++ .|.+.......+.........+.......+||..++
T Consensus 49 yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~~~ 127 (561)
T PTZ00058 49 YDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPLLV 127 (561)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHHHH
Confidence 689999999999999999999999999999973 322 222222221111111111111111112367999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEE-----------------------------ceeEEEcceEE
Q psy14461 162 KLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKL-----------------------------SNRSVTGFNFL 212 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~-----------------------------~~~~~~~d~lV 212 (535)
+++++++.++...+...++..||+++.|++.+.++++|.+ ++.+++||+||
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~lV 207 (561)
T PTZ00058 128 ERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNIL 207 (561)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCEEE
Confidence 9999999999888888899999999999999999888753 22579999999
Q ss_pred EeeCceecC-CCCC-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHH
Q psy14461 213 LAVERRCLP-EPRN-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLS 289 (535)
Q Consensus 213 iATGs~p~~-~i~G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~ 289 (535)
||||++|.. ++|| +.++++++++.+.. +++|+|||||++|+|+|..|+++|.+||++++ +++++.+|+++.+.+++
T Consensus 208 IATGS~P~~P~IpG~~~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~ 286 (561)
T PTZ00058 208 IAVGNKPIFPDVKGKEFTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELEN 286 (561)
T ss_pred EecCCCCCCCCCCCceeEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHH
Confidence 999999988 8999 66888999988766 89999999999999999999999999999999 99999999999999999
Q ss_pred hhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCC
Q psy14461 290 SLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKD 368 (535)
Q Consensus 290 ~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~ 368 (535)
.|+++||++ ++..+.+++.++++.+.+.+. ++. .++++|.|++|+|++||++.++++..++. +++|+|.||+++
T Consensus 287 ~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~---~~~-~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~l 361 (561)
T PTZ00058 287 DMKKNNINIITHANVEEIEKVKEKNLTIYLS---DGR-KYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQ 361 (561)
T ss_pred HHHHCCCEEEeCCEEEEEEecCCCcEEEEEC---CCC-EEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcCC
Confidence 999999999 999999998653334555442 232 37999999999999999999877766665 458999999999
Q ss_pred CcCCCCEEEeCCcCCC----------------------------------CCCcHHHHHHHHHHHHHHHhCCCCCCCCCC
Q psy14461 369 QTSVGNIFAVGGIVHG----------------------------------KPNNASMAAISARLIIERLYGMQDQLMDYS 414 (535)
Q Consensus 369 ~T~~~~IyA~GD~~~~----------------------------------~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~ 414 (535)
||+.|+|||+|||+ + .+++++.|.+||++||.||+|......++.
T Consensus 362 qTs~p~IYA~GDv~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~~ 440 (561)
T PTZ00058 362 RTSVKHIYAVGDCC-MVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYK 440 (561)
T ss_pred ccCCCCEEEeEecc-CccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCCC
Confidence 99999999999999 6 578999999999999999998644456778
Q ss_pred CCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEE
Q psy14461 415 FLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLV 494 (535)
Q Consensus 415 ~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli 494 (535)
.+|+++|++|++|+||+||+||++.++.+.+.+....+....++..... ....+.||+||+
T Consensus 441 ~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~g~~Kli 501 (561)
T PTZ00058 441 LIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMD-------------------PAQKEKTYLKLV 501 (561)
T ss_pred CCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhccc-------------------ccCCCCeEEEEE
Confidence 8999999999999999999999988553457776666654433320000 011367999999
Q ss_pred EECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 495 CLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 495 ~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
+|+++++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus 502 ~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~ 542 (561)
T PTZ00058 502 CVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDET 542 (561)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhc
Confidence 99999999999999999999999999999999999999864
No 8
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.9e-61 Score=517.05 Aligned_cols=416 Identities=21% Similarity=0.282 Sum_probs=348.2
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecC---------Ccccccc-------cccccccccccchhhccc--ccccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERG---------SHLSFRK-------KRRLYYPVAMSDLELEQD--STSAL 150 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~---------~~~~~~~-------~~l~~~~~~i~~~~~~~~--~~~~~ 150 (535)
+|++|||+||+|+.+|.++...+.+|+|||+. ..+++.. .+.+.+...+........ +....
T Consensus 26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~~ 105 (499)
T PLN02507 26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEIN 105 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 68999999999999999999999999999962 2233221 111111101111111111 11111
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---e--eEEEcceEEEeeCceecC-CCC
Q psy14461 151 NVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---N--RSVTGFNFLLAVERRCLP-EPR 224 (535)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---~--~~~~~d~lViATGs~p~~-~i~ 224 (535)
....++|.+++++++..+.++...++..++..||+++.|++.+++++++.+. + .++.||+||||||++|.. ++|
T Consensus 106 ~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p~ip 185 (499)
T PLN02507 106 EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIP 185 (499)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCCCCC
Confidence 1346899999999999999998888888999999999999999999888773 2 358999999999999998 899
Q ss_pred C-CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cce
Q psy14461 225 N-SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCC 301 (535)
Q Consensus 225 G-~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~ 301 (535)
| +..+++++++.+...+++++|||+|++|+|+|..|+++|.+||++++ +.+++.+++++.+.+.+.|+++||++ +++
T Consensus 186 G~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~ 265 (499)
T PLN02507 186 GKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRT 265 (499)
T ss_pred CccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCC
Confidence 9 66678888888888899999999999999999999999999999999 88999999999999999999999999 999
Q ss_pred EEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCc
Q psy14461 302 VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGI 381 (535)
Q Consensus 302 ~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~ 381 (535)
++++++.. ++.+.+++ .+|+ ++++|.|++++|++||++.+.++.++++++++|+|.||+++||+.|||||+|||
T Consensus 266 ~V~~i~~~-~~~~~v~~---~~g~--~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv 339 (499)
T PLN02507 266 NLTQLTKT-EGGIKVIT---DHGE--EFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDV 339 (499)
T ss_pred EEEEEEEe-CCeEEEEE---CCCc--EEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEc
Confidence 99999875 34556665 3666 799999999999999999877788899999899999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCC
Q psy14461 382 VHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDP 461 (535)
Q Consensus 382 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (535)
+ +.+.+++.|.+||++||+||++......++..+|+++|+.|++|+||+||+||++.++ .++.+...++.+..++. +
T Consensus 340 ~-~~~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~-~~~~~~~~~~~~~~~~~-~ 416 (499)
T PLN02507 340 T-NRINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAK-GDILVFTSSFNPMKNTI-S 416 (499)
T ss_pred C-CCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccC-CCEEEEEeecCcccccc-c
Confidence 9 8889999999999999999998765566788899999999999999999999998744 25777666666544443 2
Q ss_pred CCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 462 LLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
.. .+++|+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus 417 ~~----------------------~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~ 468 (499)
T PLN02507 417 GR----------------------QEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDST 468 (499)
T ss_pred cC----------------------CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence 22 36799999999999999999999999999999999999999999999764
No 9
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.6e-61 Score=511.40 Aligned_cols=417 Identities=16% Similarity=0.191 Sum_probs=347.8
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccc-cccchh---hcccccc-cccccccCHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPV-AMSDLE---LEQDSTS-ALNVTIRNWNAA 160 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~-~i~~~~---~~~~~~~-~~~~~~~~~~~l 160 (535)
++++|||+||+|+.+|.++...+.+|+|||+.+.+++.. +.+|.... ..+... .....+. ......+||..+
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDKM 84 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence 689999999999999999999999999999976554321 11222100 011100 0011110 012346799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---e--eEEEcceEEEeeCceecC-C-CCC--Cceech
Q psy14461 161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---N--RSVTGFNFLLAVERRCLP-E-PRN--SALISA 231 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---~--~~~~~d~lViATGs~p~~-~-i~G--~~v~~~ 231 (535)
.++++..++++...+...++..||+++.|++.+.+++++.+. + .++.||+||||||++|+. | +++ +.++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~~~ 164 (471)
T PRK06467 85 RARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDS 164 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcEECh
Confidence 999999999998888888999999999999999999988774 2 479999999999999985 4 555 568999
Q ss_pred hhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS 309 (535)
Q Consensus 232 ~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~ 309 (535)
++++.+...|++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+++.|+++ |++ +++.+++++..
T Consensus 165 ~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~ 243 (471)
T PRK06467 165 TDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAK 243 (471)
T ss_pred HHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEc
Confidence 99999888899999999999999999999999999999999 9999999999999999999988 999 99999999865
Q ss_pred CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461 310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA 389 (535)
Q Consensus 310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~ 389 (535)
++.+.+++.+ .+|+.+++++|.|++++|++||++++.++.++++++++|+|.||+++||+.|+|||+|||+ +.++++
T Consensus 244 -~~~~~v~~~~-~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~-~~~~la 320 (471)
T PRK06467 244 -EDGIYVTMEG-KKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIV-GQPMLA 320 (471)
T ss_pred -CCEEEEEEEe-CCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhc-CCcccH
Confidence 3455666542 1243457999999999999999998767888999999999999999999999999999999 888999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461 390 SMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469 (535)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (535)
+.|.+||++||.||++.. ..+++..+|+++|++|++++||+||+||++.+. ++.+...++....++. ..
T Consensus 321 ~~A~~eG~~aa~~i~g~~-~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~--~~~~~~~~~~~~~~~~-~~------- 389 (471)
T PRK06467 321 HKGVHEGHVAAEVIAGKK-HYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGI--EYETATFPWAASGRAI-AS------- 389 (471)
T ss_pred HHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCCceeEEECCHHHHHhcCC--CeEEEEEecCcchhhh-hC-------
Confidence 999999999999999864 457788899999999999999999999998843 6777777776544443 11
Q ss_pred hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
+.++||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus 390 ---------------~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~ 440 (471)
T PRK06467 390 ---------------DCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALT 440 (471)
T ss_pred ---------------CCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence 257899999999999999999999999999999999999999999999864
No 10
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=3.1e-61 Score=513.77 Aligned_cols=417 Identities=18% Similarity=0.212 Sum_probs=347.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---ccccccc----ccccchh--hcccccccccccccCHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYP----VAMSDLE--LEQDSTSALNVTIRNWNA 159 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~----~~i~~~~--~~~~~~~~~~~~~~~~~~ 159 (535)
+|++|||+||+|+.+|+++...+.+|+|||++. +++.. +-+|... ....... .+..+........+||..
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFKA 84 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHHH
Confidence 689999999999999999999999999999874 22210 1122110 0000000 011122111124679999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCCC---CceechhhH
Q psy14461 160 ATKLIKRFCIRAKNDSMRELKAL-GIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPRN---SALISADDL 234 (535)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~-gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~~ 234 (535)
+.++++..+.++...+...+++. ||+++.|++.+.+++++++++.++.||+||||||++|+. ++|| ..+++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~~~~~~ 164 (463)
T PRK06370 85 VMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGARAAIPPIPGLDEVGYLTNETI 164 (463)
T ss_pred HHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCCCCCCCCCCCCCcCceEcchHh
Confidence 99999998888777788888887 999999999999999999977789999999999999998 9999 457888888
Q ss_pred HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC
Q psy14461 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG 312 (535)
Q Consensus 235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~ 312 (535)
+.+...+++|+|||+|++|+|+|..|+++|.+|+++++ +.+++.+++++.+.+.+.|+++||++ +++++.+++.. ++
T Consensus 165 ~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~ 243 (463)
T PRK06370 165 FSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERD-GD 243 (463)
T ss_pred hCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CC
Confidence 88777899999999999999999999999999999999 99999999999999999999999999 99999999875 34
Q ss_pred cEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHH
Q psy14461 313 MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMA 392 (535)
Q Consensus 313 ~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A 392 (535)
...+.+.. ++...++++|.|++|+|++||++.++++..+++++++|+|.||+++||+.|+|||+|||+ +.+.+.+.|
T Consensus 244 ~~~v~~~~--~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~-~~~~~~~~A 320 (463)
T PRK06370 244 GIAVGLDC--NGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCN-GRGAFTHTA 320 (463)
T ss_pred EEEEEEEe--CCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecC-CCcccHHHH
Confidence 44555432 222337999999999999999986666888999999999999999999999999999999 888999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhh
Q psy14461 393 AISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC 472 (535)
Q Consensus 393 ~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (535)
.+||++||+||++......++..+|+++|++|++++||+||+||++.+. ++.+...++....++. ..
T Consensus 321 ~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~-~~---------- 387 (463)
T PRK06370 321 YNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGR--RVLVGTRPMTRVGRAV-EK---------- 387 (463)
T ss_pred HHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCC--CeEEEEEecCcchhHH-hc----------
Confidence 9999999999998645566778899999999999999999999998743 6777777776655543 11
Q ss_pred ccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 473 LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 473 ~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
+.++||+||++|++|++|||+|++|++|+|+|+.++++|++++|++||.++
T Consensus 388 ------------~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 438 (463)
T PRK06370 388 ------------GETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRA 438 (463)
T ss_pred ------------CCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence 146899999999999999999999999999999999999999999999864
No 11
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=4.5e-61 Score=509.12 Aligned_cols=411 Identities=20% Similarity=0.232 Sum_probs=338.4
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc------ccccccccccccccccchhhccccccc-ccccccCHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH------LSFRKKRRLYYPVAMSDLELEQDSTSA-LNVTIRNWNAAT 161 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~------~~~~~~~l~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~l~ 161 (535)
+|++|||+||+|..+|+++ .+.+|+|||++.. .++.|.+....+..+.......+.+.. .....+||.+++
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIV 79 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHH
Confidence 4789999999999999875 4899999998641 112222221111111111111111111 123467999999
Q ss_pred HHHHHHHHHHHHH-HHHH-HHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCceecC-CCCC---CceechhhH
Q psy14461 162 KLIKRFCIRAKND-SMRE-LKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALISADDL 234 (535)
Q Consensus 162 ~~~~~~~~~~~~~-~~~~-~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~~ 234 (535)
++++..++++... .... ++..||+++.|++.+.++++|++.+ .+++||+||||||++|+. ++|| ..+++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~~ 159 (451)
T PRK07846 80 SRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDTI 159 (451)
T ss_pred HHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEEchHHH
Confidence 9999998888553 4455 7788999999999999999999964 679999999999999988 8888 347888999
Q ss_pred HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC
Q psy14461 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG 312 (535)
Q Consensus 235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~ 312 (535)
+.+...|++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.+ +.+|++ ++.++++++.+ ++
T Consensus 160 ~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~-~~ 237 (451)
T PRK07846 160 MRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQD-GS 237 (451)
T ss_pred hhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEc-CC
Confidence 88888899999999999999999999999999999999 9999999999998887755 567999 99999999865 34
Q ss_pred cEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHH
Q psy14461 313 MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMA 392 (535)
Q Consensus 313 ~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A 392 (535)
.+.+++. +|+ ++++|.|++|+|++||+++++++..+++++++|+|.||+++||+.|+|||+|||+ +.+++.+.|
T Consensus 238 ~v~v~~~---~g~--~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~-~~~~l~~~A 311 (451)
T PRK07846 238 GVTLRLD---DGS--TVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVS-SPYQLKHVA 311 (451)
T ss_pred EEEEEEC---CCc--EeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecC-CCccChhHH
Confidence 5556652 566 7999999999999999999877888999999999999999999999999999999 888899999
Q ss_pred HHHHHHHHHHHhCCC-CCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhh
Q psy14461 393 AISARLIIERLYGMQ-DQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLV 471 (535)
Q Consensus 393 ~~~g~~aa~~i~g~~-~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (535)
.+||+++|+||++.. ....++..+|+++|++|++|+||+||+||++.+. ++.+...++....++. ..
T Consensus 312 ~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~--------- 379 (451)
T PRK07846 312 NHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAAGL--DITVKVQNYGDVAYGW-AM--------- 379 (451)
T ss_pred HHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCC--CEEEEEEecCcchhhh-hC---------
Confidence 999999999999763 3345777899999999999999999999998843 6777777776655442 11
Q ss_pred hccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcC
Q psy14461 472 CLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDG 534 (535)
Q Consensus 472 ~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~ 534 (535)
+.++||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.+
T Consensus 380 -------------~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~ 429 (451)
T PRK07846 380 -------------EDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMAR 429 (451)
T ss_pred -------------CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhh
Confidence 14689999999999999999999999999999999999999999999975
No 12
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=2e-60 Score=507.29 Aligned_cols=421 Identities=27% Similarity=0.361 Sum_probs=345.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC--------ccccc-------ccccccccccccchhhccc--cccccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS--------HLSFR-------KKRRLYYPVAMSDLELEQD--STSALN 151 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~--------~~~~~-------~~~l~~~~~~i~~~~~~~~--~~~~~~ 151 (535)
+|++|||+|++|+.+|++....+.+|+|||+.. .+++. |..+......+........ +.. ..
T Consensus 3 yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~-~~ 81 (484)
T TIGR01438 3 YDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN-VE 81 (484)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc-cC
Confidence 589999999999999999999999999999731 12221 1111111000000000011 111 11
Q ss_pred c-cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecC-CCC
Q psy14461 152 V-TIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLP-EPR 224 (535)
Q Consensus 152 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~-~i~ 224 (535)
. ..+||.++.+++++.+.++...+...++..||+++.|+++|.++++|.+.. ..+.||+||||||++|+. ++|
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ip 161 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIP 161 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCC
Confidence 2 467999999999999999988888889999999999999999999998842 479999999999999988 899
Q ss_pred C--CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cce
Q psy14461 225 N--SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCC 301 (535)
Q Consensus 225 G--~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~ 301 (535)
| +..+++++++.+...+++++|||||++|+|+|..|+++|.+||+++++.+++.+|+++.+.+++.|+++||++ +++
T Consensus 162 G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~ 241 (484)
T TIGR01438 162 GAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQF 241 (484)
T ss_pred CccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCc
Confidence 9 5567889999888889999999999999999999999999999999877789999999999999999999999 999
Q ss_pred EEEEEEEeCCCcEEEEEecCCCCC-ceEEEcCEEEEccCCCCCCCCCCccccCeeecC-CCceEcCCCCCcCCCCEEEeC
Q psy14461 302 VIEKVISSFDGMKGVRGFHPESKE-PFADVFKTVVNAMEKKFDFAALNLHHIGVDIKK-KSYVVCNEKDQTSVGNIFAVG 379 (535)
Q Consensus 302 ~v~~i~~~~~~~~~v~~~~~~~G~-~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-~G~i~vd~~~~T~~~~IyA~G 379 (535)
.+++++.. ++.+.+++. +|+ ..++++|.|++|+|++||++.++++..++++++ +|+|.||+++||+.|+|||+|
T Consensus 242 ~v~~v~~~-~~~~~v~~~---~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~G 317 (484)
T TIGR01438 242 VPIKVEQI-EAKVKVTFT---DSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVG 317 (484)
T ss_pred eEEEEEEc-CCeEEEEEe---cCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEE
Confidence 99999865 345566664 332 237999999999999999998877889999876 599999999999999999999
Q ss_pred CcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCccccc
Q psy14461 380 GIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL 459 (535)
Q Consensus 380 D~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~ 459 (535)
||+...+.+.+.|.+||+++|+||++......++..+|+++|++|++|+||+||+||+++++...+.+...++..+.++.
T Consensus 318 Dv~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~ 397 (484)
T TIGR01438 318 DILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTI 397 (484)
T ss_pred EecCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhhHh
Confidence 99833678999999999999999998655456788899999999999999999999998754335777766776555543
Q ss_pred CCCCCcchhhhhhccCCcccccccccCcceEEEEEEE-CCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCL-KGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~-~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
+.+. ..+.+|+||+++ ++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus 398 -~~~~--------------------~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~ 453 (484)
T TIGR01438 398 -PSRD--------------------NSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNT 453 (484)
T ss_pred -hCCC--------------------ccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhh
Confidence 2221 125799999996 579999999999999999999999999999999999864
No 13
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=3.4e-60 Score=506.00 Aligned_cols=417 Identities=20% Similarity=0.239 Sum_probs=344.7
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---ccccccccc-ccchhh--ccccccc-ccccccCHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPVA-MSDLEL--EQDSTSA-LNVTIRNWNAAT 161 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~~-i~~~~~--~~~~~~~-~~~~~~~~~~l~ 161 (535)
++++|||+||+|+.+|+++...+.+|+|||++. +++.. +-+|...+. .+.... +...+.. .....++|.+++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 378999999999999999999999999999975 33221 012211000 000000 0001110 123467999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHhcCcEEEEeEEEEecCCEEEEce--eEEEcceEEEeeCceecC-CCCC---CceechhhH
Q psy14461 162 KLIKRFCIRAKN-DSMRELKALGIDIVRTAAAFTNPHTIKLSN--RSVTGFNFLLAVERRCLP-EPRN---SALISADDL 234 (535)
Q Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~--~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~~ 234 (535)
.++++....+.. .+...+++.+|+++.|++.+.++++|.+.+ ..+.||+||||||++|.. ++|| .++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~ 159 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEA 159 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhh
Confidence 999988888865 366778889999999999999999999865 468999999999999988 8999 347888898
Q ss_pred HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC
Q psy14461 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG 312 (535)
Q Consensus 235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~ 312 (535)
+.+...+++++|||+|++|+|+|..|+++|.+||++++ +++++.+++++...+++.|++.||++ ++++|++++.+ ++
T Consensus 160 ~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~ 238 (463)
T TIGR02053 160 LALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVR-GG 238 (463)
T ss_pred hCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEc-CC
Confidence 88777789999999999999999999999999999999 89999999999999999999999999 99999999875 34
Q ss_pred cEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHH
Q psy14461 313 MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMA 392 (535)
Q Consensus 313 ~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A 392 (535)
...+++.. ++...++++|.|++|+|++||++.++++..+++++++|+|.||+++||+.|+|||+|||+ +.+.+++.|
T Consensus 239 ~~~v~~~~--~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~-~~~~~~~~A 315 (463)
T TIGR02053 239 GKIITVEK--PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVT-GGLQLEYVA 315 (463)
T ss_pred EEEEEEEe--CCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecC-CCcccHhHH
Confidence 45555542 233347999999999999999996666888999999999999999999999999999999 788899999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhh
Q psy14461 393 AISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVC 472 (535)
Q Consensus 393 ~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (535)
.+||++||.||++.....+++..+|+++|++|++++||+||+||++.+. ++.+...++..++++. ..
T Consensus 316 ~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~---------- 382 (463)
T TIGR02053 316 AKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGI--ECDCRTLPLTNVPRAR-IN---------- 382 (463)
T ss_pred HHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCC--CeEEEEEecccchHHH-hc----------
Confidence 9999999999998634456777899999999999999999999998843 6777776766555543 11
Q ss_pred ccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 473 LKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 473 ~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
+.+.||+||++|++|++|||+|++|++|.|+|+.++++|++++|++||.++
T Consensus 383 ------------~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 433 (463)
T TIGR02053 383 ------------RDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDT 433 (463)
T ss_pred ------------CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence 256899999999999999999999999999999999999999999999864
No 14
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-59 Score=500.98 Aligned_cols=417 Identities=17% Similarity=0.173 Sum_probs=342.4
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---ccccccccc-ccchhh--c---ccccccccccccCHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPVA-MSDLEL--E---QDSTSALNVTIRNWNA 159 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~~-i~~~~~--~---~~~~~~~~~~~~~~~~ 159 (535)
++|+|||+||+|+.+|+++...+.+|+|||+.+.+++.. +-+|....- .+.... + ...+.......++|.+
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 83 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQ 83 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHH
Confidence 689999999999999999999999999999855444321 012211000 000000 0 0111110124678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc---e--eEEEcceEEEeeCceecCCCCC-----Ccee
Q psy14461 160 ATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS---N--RSVTGFNFLLAVERRCLPEPRN-----SALI 229 (535)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~---~--~~~~~d~lViATGs~p~~~i~G-----~~v~ 229 (535)
+.++++..+.++...+...++..+|+++.|++.+.+++++.+. + .+++||+||||||++|.. +|| ..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~-ipg~~~~~~~~~ 162 (466)
T PRK06115 84 MMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP-LPGVTIDNQRII 162 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC-CCCCCCCCCeEE
Confidence 9999999999888888888888999999999999888887763 2 369999999999999864 444 4578
Q ss_pred chhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461 230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVI 307 (535)
Q Consensus 230 ~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~ 307 (535)
++++++.+...|++++|||+|++|+|+|..|+++|.+||++++ +++++.+++++.+.+++.|++.||++ +++++++++
T Consensus 163 ~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~ 242 (466)
T PRK06115 163 DSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGAT 242 (466)
T ss_pred CHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEE
Confidence 8899988877899999999999999999999999999999999 99999999999999999999999999 999999998
Q ss_pred EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCC
Q psy14461 308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPN 387 (535)
Q Consensus 308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~ 387 (535)
.+ ++.+.+.+....+|+.+++++|.|++++|++||++.++++..+++++++| +.+|++++|+.|+|||+|||+ +.++
T Consensus 243 ~~-~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~IyA~GD~~-~~~~ 319 (466)
T PRK06115 243 AG-ADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPGVWVIGDVT-SGPM 319 (466)
T ss_pred Ec-CCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCCEEEeeecC-CCcc
Confidence 65 34455555321235445799999999999999999877788889888777 678999999999999999999 8899
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcch
Q psy14461 388 NASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENF 467 (535)
Q Consensus 388 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (535)
+++.|.+||++||+||++.. ...++..+|+++|++|++++||+||+||++.+. ++.+...++..+.++. ..
T Consensus 320 la~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~----- 390 (466)
T PRK06115 320 LAHKAEDEAVACIERIAGKA-GEVNYGLIPGVIYTRPEVATVGKTEEQLKAEGR--AYKVGKFPFTANSRAK-IN----- 390 (466)
T ss_pred cHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCcccEEeeCCHHHHHHCCC--CEEEEEEecccChhhH-hc-----
Confidence 99999999999999999864 346788899999999999999999999998844 6777777776655543 11
Q ss_pred hhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 468 VKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
+++.||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus 391 -----------------~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~ 441 (466)
T PRK06115 391 -----------------HETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALT 441 (466)
T ss_pred -----------------CCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhC
Confidence 246899999999999999999999999999999999999999999999864
No 15
>KOG1335|consensus
Probab=100.00 E-value=6.7e-61 Score=463.73 Aligned_cols=419 Identities=19% Similarity=0.203 Sum_probs=366.2
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---ccccccccc-ccchh---h--cccccc-cccccccCH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPVA-MSDLE---L--EQDSTS-ALNVTIRNW 157 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~~-i~~~~---~--~~~~~~-~~~~~~~~~ 157 (535)
-+|++|||+||.|..||++....+...+.+|+...+++.. +-+|..+.. -++.- + .+..+. .+....+|.
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl 118 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDL 118 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecCH
Confidence 3788999999999999999999999999999987654321 012211000 01110 0 111111 233678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecCCCCC-----Cc
Q psy14461 158 NAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLPEPRN-----SA 227 (535)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~~i~G-----~~ 227 (535)
+.++..+...+..+...+...+++.+|+++.|...+.++++|++.. ..+.++++||||||.-. ++|| +.
T Consensus 119 ~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~-~~PGI~IDekk 197 (506)
T KOG1335|consen 119 QAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVT-PFPGITIDEKK 197 (506)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccC-CCCCeEecCce
Confidence 9999999999999999999999999999999999999999999853 67999999999999433 4667 67
Q ss_pred eechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461 228 LISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEK 305 (535)
Q Consensus 228 v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~ 305 (535)
+.+++.++.+.+.|++++|||+|++|+|++..+.|+|.+||+++. +++.+.+|.++++.+++.|.+.|++| +++++..
T Consensus 198 IVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~ 277 (506)
T KOG1335|consen 198 IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTS 277 (506)
T ss_pred EEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEE
Confidence 899999999999999999999999999999999999999999999 99999999999999999999999999 9999999
Q ss_pred EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC
Q psy14461 306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK 385 (535)
Q Consensus 306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~ 385 (535)
++...++.+.+++++..+|+..+++||.+++++|++|-+..|++++.|++.|++|++.+|+.++|.+|+||++||++ .+
T Consensus 278 a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~-~g 356 (506)
T KOG1335|consen 278 ATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVT-LG 356 (506)
T ss_pred eeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCCceEEecccC-Cc
Confidence 99886678888888877888889999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCc
Q psy14461 386 PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPE 465 (535)
Q Consensus 386 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (535)
|+++|.|..||-.+.+.|.+.. ...+|..+|.+.|+.||+++||+||+|+++++- .|.+.+.+|..+.++. .
T Consensus 357 pMLAhkAeeegI~~VE~i~g~~-~hv~ynciP~v~ythPEvawVG~TEeqlkeegi--~y~vgkfpF~aNsRak-t---- 428 (506)
T KOG1335|consen 357 PMLAHKAEEEGIAAVEGIAGGH-GHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGI--KYKVGKFPFSANSRAK-T---- 428 (506)
T ss_pred chhhhhhhhhchhheeeecccC-cccccCCCCceeecccceeeeccchhhHHhcCc--ceEeeeccccccchhh-c----
Confidence 9999999999999999999865 346777899999999999999999999999844 7888888888776654 1
Q ss_pred chhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcC
Q psy14461 466 NFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDG 534 (535)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~ 534 (535)
++..+||+|+++|++|++|||+||+||+|.|||++.++||+.|.+.+|++.
T Consensus 429 ------------------n~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvar 479 (506)
T KOG1335|consen 429 ------------------NNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVAR 479 (506)
T ss_pred ------------------cCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhh
Confidence 236799999999999999999999999999999999999999999999874
No 16
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-59 Score=501.78 Aligned_cols=416 Identities=18% Similarity=0.174 Sum_probs=341.8
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccccccc--hhhc----ccccccccccccCHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPVAMSD--LELE----QDSTSALNVTIRNWNA 159 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~~i~~--~~~~----~~~~~~~~~~~~~~~~ 159 (535)
++++|||+||+|+.+|+++...+.+|+|||++. +++.. +.+|.... +.. .... ...+.......++|..
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l-~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 82 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY-WGGVCLNVGCIPSKAL-LRNAELAHIFTKEAKTFGISGEVTFDYGA 82 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceecCCccccHHH-HhhHHHHHHHHHHHHhcCCCcCcccCHHH
Confidence 689999999999999999999999999999863 22211 01221100 100 0000 0011111234679999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecCCCCC----Cceec
Q psy14461 160 ATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLPEPRN----SALIS 230 (535)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~~i~G----~~v~~ 230 (535)
+..+++..++++...+...++..+|+.+.|++.+.+.+++.+.. .+++||+||||||++|+. +|| ..+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~-~pg~~~~~~v~~ 161 (466)
T PRK07818 83 AFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRL-LPGTSLSENVVT 161 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCC-CCCCCCCCcEEc
Confidence 99999988888877777777788999999999999999888742 479999999999999976 344 34778
Q ss_pred hhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461 231 ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS 308 (535)
Q Consensus 231 ~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~ 308 (535)
.++.+.....|++++|||+|++|+|+|..|+++|.+|+++++ +++++.+++++.+.+++.|+++||++ +++++++++.
T Consensus 162 ~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~ 241 (466)
T PRK07818 162 YEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDD 241 (466)
T ss_pred hHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEE
Confidence 777666666789999999999999999999999999999999 99999999999999999999999999 9999999986
Q ss_pred eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCc
Q psy14461 309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNN 388 (535)
Q Consensus 309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~ 388 (535)
+ ++.+.+++.. .+|+..++++|.|++|+|++||++.++++..+++++++|+|.||+++||+.|+|||+|||+ +.+++
T Consensus 242 ~-~~~~~v~~~~-~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~-~~~~l 318 (466)
T PRK07818 242 N-GSKVTVTVSK-KDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVT-AKLQL 318 (466)
T ss_pred e-CCeEEEEEEe-cCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecC-CCccc
Confidence 5 3445555532 2565457999999999999999998777888999988999999999999999999999999 88899
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCC-CCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcch
Q psy14461 389 ASMAAISARLIIERLYGMQDQLM-DYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENF 467 (535)
Q Consensus 389 ~~~A~~~g~~aa~~i~g~~~~~~-~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (535)
++.|.+||++||.||++....+. ++..+|+++|++|++|+||+||+||++.+. ++.+...++....++. .
T Consensus 319 ~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~------ 389 (466)
T PRK07818 319 AHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGY--DVKVAKFPFTANGKAH-G------ 389 (466)
T ss_pred HhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCC--cEEEEEEECCccchhh-h------
Confidence 99999999999999998654444 788899999999999999999999998843 6777777776555543 1
Q ss_pred hhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 468 VKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
.+.+.||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus 390 ----------------~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~ 441 (466)
T PRK07818 390 ----------------LGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARN 441 (466)
T ss_pred ----------------cCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcC
Confidence 1257899999999999999999999999999999999999999999999864
No 17
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1.3e-59 Score=500.56 Aligned_cols=414 Identities=20% Similarity=0.194 Sum_probs=343.5
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccc----cccchhhccccccc-c---cccccCH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPV----AMSDLELEQDSTSA-L---NVTIRNW 157 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~----~i~~~~~~~~~~~~-~---~~~~~~~ 157 (535)
.+++|||+|++|+.+|......+.+|+|||++. +++.. +-+|...+ .+.........+.. . ....+||
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 368999999999999999988899999999875 32211 01221100 00000001111111 0 1336799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEE----ecCCEEEEc---e--eEEEcceEEEeeCceecC-CCCC--
Q psy14461 158 NAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAF----TNPHTIKLS---N--RSVTGFNFLLAVERRCLP-EPRN-- 225 (535)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~----~~~~~v~~~---~--~~~~~d~lViATGs~p~~-~i~G-- 225 (535)
..+..++++..+.+...+...++..||+++.|++.+ .+++++.+. + .++.||+||||||++|.. ++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~ 160 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPD 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCCC
Confidence 999999999998888788888999999999999998 677887773 2 269999999999999987 6544
Q ss_pred -CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceE
Q psy14461 226 -SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCV 302 (535)
Q Consensus 226 -~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~ 302 (535)
+.+++..+++.+...+++++|||+|++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|+++||++ ++++
T Consensus 161 ~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~ 240 (466)
T PRK07845 161 GERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSR 240 (466)
T ss_pred CceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCE
Confidence 56888888888888889999999999999999999999999999999 99999999999999999999999999 9999
Q ss_pred EEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcC
Q psy14461 303 IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV 382 (535)
Q Consensus 303 v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~ 382 (535)
+++++.+ ++.+.+.+. +|+ ++++|.|++++|++||++.+++++++++++++|+|.||+++||+.|+|||+|||+
T Consensus 241 v~~v~~~-~~~~~v~~~---~g~--~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~ 314 (466)
T PRK07845 241 AESVERT-GDGVVVTLT---DGR--TVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCT 314 (466)
T ss_pred EEEEEEe-CCEEEEEEC---CCc--EEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEeecc
Confidence 9999865 355666663 676 7999999999999999998767888999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCC
Q psy14461 383 HGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPL 462 (535)
Q Consensus 383 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (535)
+.+++++.|..||++||.||++....+.++..+|+++|++|++|+||+||+||++.+. ++.+...++....++. .
T Consensus 315 -~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~- 389 (466)
T PRK07845 315 -GVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEV--PARTVMLPLATNPRAK-M- 389 (466)
T ss_pred -CCccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCC--ceEEEEEecccCchhh-h-
Confidence 8889999999999999999998654556788899999999999999999999998743 5777666665544432 1
Q ss_pred CCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 463 LPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
.+.++||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus 390 ---------------------~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 441 (466)
T PRK07845 390 ---------------------SGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQT 441 (466)
T ss_pred ---------------------cCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcC
Confidence 1257899999999999999999999999999999999999999999999764
No 18
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=9.2e-60 Score=499.55 Aligned_cols=411 Identities=18% Similarity=0.239 Sum_probs=332.6
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc------ccccccccccccccccchhhccccccc-ccccccCHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH------LSFRKKRRLYYPVAMSDLELEQDSTSA-LNVTIRNWNAAT 161 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~------~~~~~~~l~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~l~ 161 (535)
+|++|||+|++|..++.++ .+.+|+|||++.. .++.|.+...+...+.........+.. .....+||.+++
T Consensus 3 yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 80 (452)
T TIGR03452 3 YDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDIV 80 (452)
T ss_pred cCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHHH
Confidence 5899999999999998765 4889999998641 222222222221111111111111111 123467999999
Q ss_pred HHHHH-HHHHHHHH-HHHHH--HhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCceecC-CCCC---Cceechh
Q psy14461 162 KLIKR-FCIRAKND-SMREL--KALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALISAD 232 (535)
Q Consensus 162 ~~~~~-~~~~~~~~-~~~~~--~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~~~~ 232 (535)
+++.+ ..+.+... ....+ +..||+++.|++.+.+.++|.+.+ .+++||+||||||++|.. ++.+ ..+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~~~ 160 (452)
T TIGR03452 81 SRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTNE 160 (452)
T ss_pred HHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCEEEcHH
Confidence 99887 66666443 22222 447999999999999999999854 679999999999999987 5433 3478999
Q ss_pred hHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461 233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF 310 (535)
Q Consensus 233 ~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~ 310 (535)
+++.+...+++++|||+|++|+|+|..|+++|.+||++++ +.+++.+++++.+.+.+.+ +.+|++ ++.++++++.+
T Consensus 161 ~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~- 238 (452)
T TIGR03452 161 DIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQD- 238 (452)
T ss_pred HHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEc-
Confidence 9998888899999999999999999999999999999999 8888989999998887755 468999 99999999875
Q ss_pred CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHH
Q psy14461 311 DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNAS 390 (535)
Q Consensus 311 ~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~ 390 (535)
++.+.+++. +|+ ++++|.+++++|++||+++++++.+|++++++|+|.||+++||+.|+|||+|||+ +.+++.+
T Consensus 239 ~~~v~v~~~---~g~--~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~l~~ 312 (452)
T TIGR03452 239 GDGVTLTLD---DGS--TVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVS-SPYQLKH 312 (452)
T ss_pred CCeEEEEEc---CCC--EEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeeccc-CcccChh
Confidence 345566653 566 7999999999999999999877888999999999999999999999999999999 8889999
Q ss_pred HHHHHHHHHHHHHhCCCC-CCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461 391 MAAISARLIIERLYGMQD-QLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469 (535)
Q Consensus 391 ~A~~~g~~aa~~i~g~~~-~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (535)
.|.+||++||+||++... ...++..+|+++|++|++++||+||+||++.+. ++.+...++....++. +.
T Consensus 313 ~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~--~~~~~~~~~~~~~~~~-~~------- 382 (452)
T TIGR03452 313 VANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGH--DITVKIQNYGDVAYGW-AM------- 382 (452)
T ss_pred HHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCC--CeEEEEecCCchhhHh-hc-------
Confidence 999999999999998643 356778899999999999999999999998843 6777666666554432 11
Q ss_pred hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcC
Q psy14461 470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDG 534 (535)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~ 534 (535)
+++.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.+
T Consensus 383 ---------------~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~ 432 (452)
T TIGR03452 383 ---------------EDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMAR 432 (452)
T ss_pred ---------------CCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhh
Confidence 25689999999999999999999999999999999999999999999975
No 19
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1e-59 Score=511.45 Aligned_cols=439 Identities=16% Similarity=0.180 Sum_probs=345.6
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC-ccc-------ccccccccccccccchhhcc---ccccc-------
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGS-HLS-------FRKKRRLYYPVAMSDLELEQ---DSTSA------- 149 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~-~~~-------~~~~~l~~~~~~i~~~~~~~---~~~~~------- 149 (535)
-+|++|||+|++|..+|+.+...+.+|+|||++. .++ +.|...+.++........+. ..+..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 3689999999999999999999999999999752 232 22222222211110111110 01110
Q ss_pred -----------c-cccccCHHHHHHHHHHHHHHHHHHHHHHHHhcC-------cEEEEeEEEEecCCEEEEc--eeEEEc
Q psy14461 150 -----------L-NVTIRNWNAATKLIKRFCIRAKNDSMRELKALG-------IDIVRTAAAFTNPHTIKLS--NRSVTG 208 (535)
Q Consensus 150 -----------~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g-------V~~~~g~~~~~~~~~v~~~--~~~~~~ 208 (535)
. ....+||.++.++++..++.++..+...++..+ |+++.|.+.+.++++|.+. +.++.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i~a 275 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKV 275 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEEEC
Confidence 1 234679999999999999999888888888875 8999999999999998873 468999
Q ss_pred ceEEEeeCceecC-CCCC---CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHH
Q psy14461 209 FNFLLAVERRCLP-EPRN---SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEM 283 (535)
Q Consensus 209 d~lViATGs~p~~-~i~G---~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~ 283 (535)
|+||||||++|.. ++++ ..++++++++.+...+++|+|||||++|+|+|..|+++|.+||++++ +++++.+++++
T Consensus 276 d~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~ei 355 (659)
T PTZ00153 276 KNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADV 355 (659)
T ss_pred CEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHHH
Confidence 9999999999987 6555 56899999988888899999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhh-hcCCeEE-cceEEEEEEEeCCC-cEEEEEecCCCC----------CceEEEcCEEEEccCCCCCCCCCCcc
Q psy14461 284 VRILLSSL-TKAGVSI-QCCVIEKVISSFDG-MKGVRGFHPESK----------EPFADVFKTVVNAMEKKFDFAALNLH 350 (535)
Q Consensus 284 ~~~~~~~l-~~~gV~i-~~~~v~~i~~~~~~-~~~v~~~~~~~G----------~~~~~~~D~vi~a~G~~p~~~~l~l~ 350 (535)
.+.+.+.+ +++||++ +++.|++|+..+++ .+.+.+.+..++ +.+++++|.||+|+|++||++.++++
T Consensus 356 s~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~ 435 (659)
T PTZ00153 356 AKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLD 435 (659)
T ss_pred HHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCch
Confidence 99998875 6799999 99999999865222 244544311111 11379999999999999999998778
Q ss_pred ccCeeecCCCceEcCCCCCcC------CCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCC------------CCCCC
Q psy14461 351 HIGVDIKKKSYVVCNEKDQTS------VGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ------------DQLMD 412 (535)
Q Consensus 351 ~~gl~~~~~G~i~vd~~~~T~------~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~------------~~~~~ 412 (535)
..+++++ +|+|.||++|||+ +|+|||+|||+ +.+++++.|.+||++||+||++.. ...++
T Consensus 436 ~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~-g~~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~ 513 (659)
T PTZ00153 436 KLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFCIGDAN-GKQMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPII 513 (659)
T ss_pred hcCCccc-CCEEeECCCCCcCCCCCCCCCCEEEEEecC-CCccCHHHHHHHHHHHHHHHcCCCccccccccccccccccc
Confidence 8888886 5999999999997 69999999999 889999999999999999999862 34567
Q ss_pred CCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccC----Ccccccc--cccC
Q psy14461 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKG----GERVLGI--HVIG 486 (535)
Q Consensus 413 ~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~ 486 (535)
+..+|+++|++|++|+||+||+||++.+...++.+....|....+++ .... | .+++ +++..|- ..++
T Consensus 514 ~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~-~~~~--~----~~p~~~~~~~y~~g~~~~~~~ 586 (659)
T PTZ00153 514 YKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVL-CENN--I----SFPNNSKNNSYNKGKYNTVDN 586 (659)
T ss_pred cCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhh-hccc--c----ccccccccccccccccccccC
Confidence 88899999999999999999999999853335666667776655543 1100 0 0011 1111110 0113
Q ss_pred cceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 487 QNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 487 ~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
+.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus 587 ~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~ 635 (659)
T PTZ00153 587 TEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHM 635 (659)
T ss_pred CceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence 7899999999999999999999999999999999999999999999864
No 20
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.8e-59 Score=499.10 Aligned_cols=413 Identities=19% Similarity=0.234 Sum_probs=340.5
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc------cccccccccccccccchhhccc--cccc-ccccccCHHHH
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL------SFRKKRRLYYPVAMSDLELEQD--STSA-LNVTIRNWNAA 160 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~------~~~~~~l~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~~l 160 (535)
+++|||+|++|+.+|++....+.+|+|||++..- ++.+.+....+..+........ +... .....+||.++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 6899999999999999999899999999997521 1111111111000000000001 1111 11346799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce----eEEEcceEEEeeCceecC-CCCC---Cceechh
Q psy14461 161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN----RSVTGFNFLLAVERRCLP-EPRN---SALISAD 232 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~----~~~~~d~lViATGs~p~~-~i~G---~~v~~~~ 232 (535)
..++++.++++...+...++..+|+++.|++.+.+++++.+.. .+++||+||||||++|+. ++++ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~~ 161 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSK 161 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcch
Confidence 9999999999888888888899999999999999999888742 479999999999999987 7776 4588899
Q ss_pred hHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461 233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF 310 (535)
Q Consensus 233 ~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~ 310 (535)
+++.+...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|+++||++ +++++++++.+
T Consensus 162 ~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~- 240 (458)
T PRK06912 162 HAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSY- 240 (458)
T ss_pred HHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEc-
Confidence 9998888899999999999999999999999999999999 99999999999999999999999999 99999999864
Q ss_pred CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHH
Q psy14461 311 DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNAS 390 (535)
Q Consensus 311 ~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~ 390 (535)
+..+ .+.. +|+..++++|.|++|+|++||++.++++..+++++++| |.||+++||+.|+|||+|||+ +.+++++
T Consensus 241 ~~~v--~~~~--~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~-~~~~la~ 314 (458)
T PRK06912 241 KKQA--LFEY--EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVI-GGIQLAH 314 (458)
T ss_pred CCEE--EEEE--CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecC-CCcccHH
Confidence 2333 3332 45445799999999999999998876678888888777 999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhh
Q psy14461 391 MAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKL 470 (535)
Q Consensus 391 ~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (535)
.|.+||++||.||+|.+ ...++..+|+++|++|++++||+||+||++++. ++.+....+....++.
T Consensus 315 ~A~~~g~~aa~~~~g~~-~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~----------- 380 (458)
T PRK06912 315 VAFHEGTTAALHASGED-VKVNYHAVPRCIYTSPEIASVGLTEKQAREQYG--DIRIGEFPFTANGKAL----------- 380 (458)
T ss_pred HHHHHHHHHHHHHcCCC-CCCCcCCCCeEEecCchhEEeeCCHHHHHHCCC--CeEEEEEecCcchhHh-----------
Confidence 99999999999999854 345677899999999999999999999998854 6777666665544433
Q ss_pred hhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 471 VCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
+.+.+.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus 381 ------------~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 433 (458)
T PRK06912 381 ------------IIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDF 433 (458)
T ss_pred ------------hcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence 11257899999999999999999999999999999999999999999999864
No 21
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=3.5e-59 Score=498.27 Aligned_cols=414 Identities=19% Similarity=0.201 Sum_probs=346.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---cccccccc-ccchhh---ccccccc-ccccccCHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLYYPVA-MSDLEL---EQDSTSA-LNVTIRNWNAA 160 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~~~~~-i~~~~~---~~~~~~~-~~~~~~~~~~l 160 (535)
++|+|||+|++|+.+|+.+...+.+|+|||+.+.+++... .+|..... ...... ..+.+.. .....++|.++
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL 85 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence 6899999999999999999999999999999765543311 12211000 000000 0000100 11335689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecC-CCCC---Cceech
Q psy14461 161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLP-EPRN---SALISA 231 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~-~i~G---~~v~~~ 231 (535)
.++.+..++++...+...+++.+|+++.|++.+.+.+++++.. .++.||+||||||++|.. ++++ ..++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v~~~ 165 (461)
T PRK05249 86 LARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDS 165 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeEEcH
Confidence 9999988888877788888999999999999999988877742 379999999999999987 6665 568999
Q ss_pred hhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS 309 (535)
Q Consensus 232 ~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~ 309 (535)
++++.+...+++++|||+|++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.++++||++ +++.+++++..
T Consensus 166 ~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~ 245 (461)
T PRK05249 166 DSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGG 245 (461)
T ss_pred HHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEe
Confidence 99988888899999999999999999999999999999999 99999999999999999999999999 99999999875
Q ss_pred CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461 310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA 389 (535)
Q Consensus 310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~ 389 (535)
++.+.+++ .+|+ ++++|.|++|+|++||++.+.++..+++++++|+|.||+++||+.|+|||+|||+ +.++++
T Consensus 246 -~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~-~~~~~~ 318 (461)
T PRK05249 246 -DDGVIVHL---KSGK--KIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVI-GFPSLA 318 (461)
T ss_pred -CCeEEEEE---CCCC--EEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecC-CCcccH
Confidence 34555665 3566 7999999999999999998767888999999999999999999999999999999 888999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461 390 SMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469 (535)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (535)
+.|.+||++||.||+|.. ...++..+|+++|+.|++|+||+||+||++.+. ++.+...++....++. .
T Consensus 319 ~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~-~-------- 386 (461)
T PRK05249 319 SASMDQGRIAAQHAVGEA-TAHLIEDIPTGIYTIPEISSVGKTEQELTAAKV--PYEVGRARFKELARAQ-I-------- 386 (461)
T ss_pred hHHHHHHHHHHHHHcCCC-cccccCCCCeEEECCCcceEecCCHHHHHHcCC--CeEEEEEcccccccee-e--------
Confidence 999999999999999754 346778899999999999999999999998844 6777776776555543 1
Q ss_pred hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
.+.+.||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus 387 --------------~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 438 (461)
T PRK05249 387 --------------AGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNT 438 (461)
T ss_pred --------------cCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence 1256899999999999999999999999999999999999999999999864
No 22
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=3.6e-59 Score=495.03 Aligned_cols=402 Identities=17% Similarity=0.213 Sum_probs=333.5
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc-ccccc---cccccccccccchhhcccccccccccccCHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH-LSFRK---KRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLI 164 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~-~~~~~---~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (535)
+|++|||+|++|+.+|+++...+.+|+|||+++. +++.. ..+|.... +.. .....+|..+..++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l-~~~-----------~~~~~~~~~~~~~~ 71 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTL-VHD-----------AQQHTDFVRAIQRK 71 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHH-HHH-----------hccCCCHHHHHHHH
Confidence 6899999999999999999989999999999763 33221 11221100 000 01245788778777
Q ss_pred HHHHHHHHHHHHHHH-HhcCcEEEEeEEEEecCCEEEEc---e-eEEEcceEEEeeCceecC-CCCC----CceechhhH
Q psy14461 165 KRFCIRAKNDSMREL-KALGIDIVRTAAAFTNPHTIKLS---N-RSVTGFNFLLAVERRCLP-EPRN----SALISADDL 234 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~-~~~gV~~~~g~~~~~~~~~v~~~---~-~~~~~d~lViATGs~p~~-~i~G----~~v~~~~~~ 234 (535)
+..++.+.......+ +..+|+++.|++.+++.+++.+. + .++.||+||||||++|.. ++|| .++++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~ 151 (441)
T PRK08010 72 NEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGL 151 (441)
T ss_pred HHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHh
Confidence 766666654333334 34599999999999988887763 2 369999999999999988 8998 347888888
Q ss_pred HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC
Q psy14461 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG 312 (535)
Q Consensus 235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~ 312 (535)
+.+...+++++|||+|++|+|+|..|+++|.+||++++ +.+++.+++++.+.+.+.|+++||++ +++++++++.+ ++
T Consensus 152 ~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~ 230 (441)
T PRK08010 152 LNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHH-EN 230 (441)
T ss_pred hcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CC
Confidence 88777889999999999999999999999999999999 99999899999999999999999999 99999999875 34
Q ss_pred cEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHH
Q psy14461 313 MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMA 392 (535)
Q Consensus 313 ~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A 392 (535)
.+.++. .+| ++++|.+++|+|++||++.+.++.++++++++|+|.||+++||+.|+|||+|||+ +.+++.+.|
T Consensus 231 ~v~v~~---~~g---~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~~~~~a 303 (441)
T PRK08010 231 QVQVHS---EHA---QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVT-GGLQFTYIS 303 (441)
T ss_pred EEEEEE---cCC---eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecC-CCccchhHH
Confidence 455544 234 5899999999999999998766788999998999999999999999999999999 889999999
Q ss_pred HHHHHHHHHHHhCC-CCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhh
Q psy14461 393 AISARLIIERLYGM-QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLV 471 (535)
Q Consensus 393 ~~~g~~aa~~i~g~-~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (535)
..||++++.||+|. .....++..+|+++|++|++|+||+||+||++.+. ++.+...++....++. .
T Consensus 304 ~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~---------- 370 (441)
T PRK08010 304 LDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGA--DIQVVTLPVAAIPRAR-V---------- 370 (441)
T ss_pred HHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCC--CeEEEEEecCcChhhh-h----------
Confidence 99999999999985 33345778899999999999999999999998843 6777777777655543 1
Q ss_pred hccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 472 CLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 472 ~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
.+.+.||+||++|++|++|||+|++|++|+|+|+.++++|++++|++||.++
T Consensus 371 ------------~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 422 (441)
T PRK08010 371 ------------MNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQ 422 (441)
T ss_pred ------------cCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence 1256899999999999999999999999999999999999999999999753
No 23
>KOG0405|consensus
Probab=100.00 E-value=1.8e-60 Score=455.36 Aligned_cols=419 Identities=24% Similarity=0.384 Sum_probs=370.0
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc-------cccccccccccccccchhhcc--cccccccccccCHH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL-------SFRKKRRLYYPVAMSDLELEQ--DSTSALNVTIRNWN 158 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~-------~~~~~~l~~~~~~i~~~~~~~--~~~~~~~~~~~~~~ 158 (535)
.++..+||+|..|+++|.+....+.++.|+|..-.+ ++.|..+.+|....+.+.... .|+..-....+||.
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~ 99 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWK 99 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHH
Confidence 467789999999999999999999999999988433 333345566633233333222 24444346789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc--e---eEEEcceEEEeeCceecC-CCCC-Cceech
Q psy14461 159 AATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS--N---RSVTGFNFLLAVERRCLP-EPRN-SALISA 231 (535)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~--~---~~~~~d~lViATGs~p~~-~i~G-~~v~~~ 231 (535)
.+.+.+..++.+++.-++..+.+.+|+++.|++.+.++.+|+++ + ..+++++++||||.+|.+ .||| +.-+++
T Consensus 100 ~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gidS 179 (478)
T KOG0405|consen 100 VIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGIDS 179 (478)
T ss_pred HHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhcccc
Confidence 99999999999999999999999999999999999999877663 3 348999999999999999 9999 888999
Q ss_pred hhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS 309 (535)
Q Consensus 232 ~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~ 309 (535)
+.++++++.|+|++|||+|++|+|+|..|+.+|.+++++-| +.+|+.||+.+++.+.+.|+.+||++ .++.++++...
T Consensus 180 Dgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~ 259 (478)
T KOG0405|consen 180 DGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKT 259 (478)
T ss_pred ccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeec
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999 99999999876
Q ss_pred CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461 310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA 389 (535)
Q Consensus 310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~ 389 (535)
.++...+... .|+ ...+|.++||+|+.||+..|++++.|++++++|.|.||+|.+||+|+||++||++ +...+.
T Consensus 260 ~~g~~~~i~~---~~~--i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~-gk~~LT 333 (478)
T KOG0405|consen 260 DDGLELVITS---HGT--IEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVT-GKINLT 333 (478)
T ss_pred CCCceEEEEe---ccc--cccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEecccc-CcEecc
Confidence 4454443332 564 4569999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhC-CCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchh
Q psy14461 390 SMAAISARLIIERLYG-MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFV 468 (535)
Q Consensus 390 ~~A~~~g~~aa~~i~g-~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (535)
++|+.+|+..|+.+++ .+....+|.++|.++|+.|++++|||||+||.++||+.++.++.+.|.++.+++ ..+
T Consensus 334 PVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~-~~~----- 407 (478)
T KOG0405|consen 334 PVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAM-SGR----- 407 (478)
T ss_pred hHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHHHHHHHhCccceEEEecCCchhHhHh-hcC-----
Confidence 9999999999999998 566778999999999999999999999999999999889999999998887776 443
Q ss_pred hhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 469 KLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
..+.++||++..++.+++|+||+|+.+.|+++.|+.|+++|+|..|+.++
T Consensus 408 -----------------k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~t 457 (478)
T KOG0405|consen 408 -----------------KEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDST 457 (478)
T ss_pred -----------------CcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccc
Confidence 36889999999999999999999999999999999999999999998764
No 24
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-58 Score=494.29 Aligned_cols=414 Identities=22% Similarity=0.260 Sum_probs=343.7
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccc-cccc---hhhccccccc-ccccccCHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPV-AMSD---LELEQDSTSA-LNVTIRNWNAA 160 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~-~i~~---~~~~~~~~~~-~~~~~~~~~~l 160 (535)
++++|||+||+|+.+|+.+...+.+|+|+|++. +++.. +-+|.... ..+. .....+.+.. .....++|.++
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKV 83 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHH
Confidence 689999999999999999998999999999986 43321 11221100 0000 0000111110 11235689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEc----eeEEEcceEEEeeCceecCCCCC-----Cceech
Q psy14461 161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS----NRSVTGFNFLLAVERRCLPEPRN-----SALISA 231 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~----~~~~~~d~lViATGs~p~~~i~G-----~~v~~~ 231 (535)
.++.+..++.+...+...+++.||+++.+++.+.+++++++. +.++.||+||||||++|.. +|| ..++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~-~pg~~~~~~~v~~~ 162 (462)
T PRK06416 84 QEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRE-LPGIEIDGRVIWTS 162 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCC-CCCCCCCCCeEEcc
Confidence 999999999988888888889999999999999998888875 2679999999999999875 334 457899
Q ss_pred hhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS 309 (535)
Q Consensus 232 ~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~ 309 (535)
++++.+...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+++.|++.||++ +++++++++.+
T Consensus 163 ~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~ 242 (462)
T PRK06416 163 DEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQT 242 (462)
T ss_pred hHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEe
Confidence 99988877889999999999999999999999999999999 99999999999999999999999999 99999999876
Q ss_pred CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461 310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA 389 (535)
Q Consensus 310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~ 389 (535)
++.+.+.+.+ +|++.++++|.+++|+|++|++++++++..+++++ +|+|.||+++||+.|+|||+|||+ +.+.++
T Consensus 243 -~~~v~v~~~~--gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAiGD~~-~~~~~~ 317 (462)
T PRK06416 243 -DDGVTVTLED--GGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAIGDIV-GGPMLA 317 (462)
T ss_pred -CCEEEEEEEe--CCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEEeeecC-CCcchH
Confidence 3455666542 34445799999999999999999877788899988 899999999999999999999999 788899
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461 390 SMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469 (535)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (535)
+.|.+||++||.||++.. ..+++..+|+++|++|++++||+||+||++.+. ++.+...++....+.. .
T Consensus 318 ~~A~~~g~~aa~ni~~~~-~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~-~-------- 385 (462)
T PRK06416 318 HKASAEGIIAAEAIAGNP-HPIDYRGIPAVTYTHPEVASVGLTEAKAKEEGF--DVKVVKFPFAGNGKAL-A-------- 385 (462)
T ss_pred HHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEECCCceEEEeCCHHHHHhcCC--CeEEEEEecCcChHhH-h--------
Confidence 999999999999999854 455678899999999999999999999999843 6777776666544443 1
Q ss_pred hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
.+.++||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus 386 --------------~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 437 (462)
T PRK06416 386 --------------LGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALT 437 (462)
T ss_pred --------------cCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence 1257899999999999999999999999999999999999999999999864
No 25
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.3e-58 Score=495.61 Aligned_cols=431 Identities=25% Similarity=0.357 Sum_probs=341.0
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC--------cccccc---ccccc----ccccccchhh-cccccccccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS--------HLSFRK---KRRLY----YPVAMSDLEL-EQDSTSALNV 152 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~--------~~~~~~---~~l~~----~~~~i~~~~~-~~~~~~~~~~ 152 (535)
+|++|||+||+|+.+|+++...+.+|+|||++. .+++.. .-+|. ++..+..... ....+.....
T Consensus 6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~~ 85 (499)
T PTZ00052 6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKTS 85 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCCC
Confidence 689999999999999999999999999999732 133221 01221 1000000000 0000111111
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce----eEEEcceEEEeeCceecC-C-CCC-
Q psy14461 153 TIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN----RSVTGFNFLLAVERRCLP-E-PRN- 225 (535)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~----~~~~~d~lViATGs~p~~-~-i~G- 225 (535)
..++|.++.++++..++++...+...++..+|+++.|++.+.+.++|.+.+ ..++||+||||||++|.. + +||
T Consensus 86 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G~ 165 (499)
T PTZ00052 86 SSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGA 165 (499)
T ss_pred CCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCCc
Confidence 267999999999999999887788888889999999999999999998743 579999999999999987 4 898
Q ss_pred -CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461 226 -SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCCVI 303 (535)
Q Consensus 226 -~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v 303 (535)
...+++++++.+...+++++|||||++|+|+|..|+++|.+||+++++.+++.+++++.+.+++.|+++||++ +++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v 245 (499)
T PTZ00052 166 KEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVP 245 (499)
T ss_pred cceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeE
Confidence 4567889998888888999999999999999999999999999998866678899999999999999999999 99999
Q ss_pred EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC
Q psy14461 304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH 383 (535)
Q Consensus 304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~ 383 (535)
++++.. ++.+.+.+. +|+ ++++|.|++++|++||++++.++.++++++++|++.+++. +|+.|+|||+|||+.
T Consensus 246 ~~v~~~-~~~~~v~~~---~g~--~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv~~ 318 (499)
T PTZ00052 246 INIEKM-DDKIKVLFS---DGT--TELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDVVE 318 (499)
T ss_pred EEEEEc-CCeEEEEEC---CCC--EEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEecC
Confidence 999865 344556663 676 7899999999999999998877888999999998777777 999999999999983
Q ss_pred CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCC
Q psy14461 384 GKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLL 463 (535)
Q Consensus 384 ~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (535)
+.+.+++.|.+||+++|.||++......++..+|+++|++|++|+||+||+||++.++...+.+...++....... ..+
T Consensus 319 ~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~ 397 (499)
T PTZ00052 319 GRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAA-VHR 397 (499)
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhc-ccc
Confidence 4678999999999999999998665567888899999999999999999999998854335777666665433221 111
Q ss_pred CcchhhhhhccCCcccccc-cccCcceEEEEEEEC-CCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 464 PENFVKLVCLKGGERVLGI-HVIGQNNFVKLVCLK-GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~~Kli~~~-~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
. .- .+.....+ +...+.||+||++|+ +|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus 398 ~------~~--~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~ 463 (499)
T PTZ00052 398 E------KH--ERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSM 463 (499)
T ss_pred c------cc--cccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc
Confidence 0 00 00000000 001268999999997 48999999999999999999999999999999999864
No 26
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2.8e-58 Score=487.85 Aligned_cols=401 Identities=15% Similarity=0.166 Sum_probs=338.5
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc-cccccc----ccccccccccchhhcccccccccccccCHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH-LSFRKK----RRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKL 163 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~-~~~~~~----~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (535)
++|+|||+||+|+.+|+++...+.+|+|||+++. +++. | .+|.... +.. .....+|.++..+
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~-c~~~gciP~k~~-~~~-----------~~~~~~~~~~~~~ 70 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGT-CINIGCIPTKTL-LVA-----------AEKNLSFEQVMAT 70 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCccccee-eecCccccchHh-hhh-----------hhcCCCHHHHHHH
Confidence 6899999999999999999989999999999874 3322 2 1332210 000 0123588999888
Q ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce----eEEEcceEEEeeCceecC-CCCC----CceechhhH
Q psy14461 164 IKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN----RSVTGFNFLLAVERRCLP-EPRN----SALISADDL 234 (535)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~----~~~~~d~lViATGs~p~~-~i~G----~~v~~~~~~ 234 (535)
++....++.......+...||+++.+++.+.++++|.+.. .++.||+||||||++|+. ++|| ..++++.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~ 150 (438)
T PRK07251 71 KNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGI 150 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHH
Confidence 8888888876667778889999999999999999888742 479999999999999998 8998 358889999
Q ss_pred HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC
Q psy14461 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG 312 (535)
Q Consensus 235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~ 312 (535)
+.+...+++|+|||+|++|+|+|..|++.|.+|+++++ +++++..++++.+.+.+.++++||++ .++++++++.+ ++
T Consensus 151 ~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~ 229 (438)
T PRK07251 151 QSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKND-GD 229 (438)
T ss_pred hcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-CC
Confidence 88877899999999999999999999999999999999 99999889999999999999999999 99999999864 34
Q ss_pred cEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHH
Q psy14461 313 MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMA 392 (535)
Q Consensus 313 ~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A 392 (535)
.+.+.. +|+ ++++|.+++|+|++|+++.++++..++.++++|+|.||+++||+.|+|||+|||+ +.+++.+.|
T Consensus 230 ~v~v~~----~g~--~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~-~~~~~~~~a 302 (438)
T PRK07251 230 QVLVVT----EDE--TYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVN-GGPQFTYIS 302 (438)
T ss_pred EEEEEE----CCe--EEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecC-CCcccHhHH
Confidence 444432 565 7999999999999999998777777888888999999999999999999999999 889999999
Q ss_pred HHHHHHHHHHHhCCCC-CCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhh
Q psy14461 393 AISARLIIERLYGMQD-QLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLV 471 (535)
Q Consensus 393 ~~~g~~aa~~i~g~~~-~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (535)
..+|++++.++++... ....+..+|+++|++|++|+||+||+||++.+. ++.+....+....++. .
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~---------- 369 (438)
T PRK07251 303 LDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGL--PYAVKELLVAAMPRAH-V---------- 369 (438)
T ss_pred HHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhcCC--CeEEEEEECCcchhhh-h----------
Confidence 9999999999997643 223566799999999999999999999998843 5776666665444432 1
Q ss_pred hccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 472 CLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 472 ~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
.++++||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus 370 ------------~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 421 (438)
T PRK07251 370 ------------NNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQ 421 (438)
T ss_pred ------------cCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc
Confidence 1256899999999999999999999999999999999999999999999763
No 27
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.9e-58 Score=493.30 Aligned_cols=412 Identities=18% Similarity=0.185 Sum_probs=337.5
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc--c-cccc----cccccchhhc--ccccccccccccCHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK--R-RLYY----PVAMSDLELE--QDSTSALNVTIRNWNA 159 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~--~-l~~~----~~~i~~~~~~--~~~~~~~~~~~~~~~~ 159 (535)
++++|||+|++|+.+|.++...+.+|+|+|+++.+++... + +|.. +..+...... +.+.. ...+.++|..
T Consensus 17 ~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~-~~~~~~~~~~ 95 (479)
T PRK14727 17 LHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVE-AVAPSIDRGL 95 (479)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcc-cCCCccCHHH
Confidence 6889999999999999999999999999999855433210 1 1211 0000000000 11211 1234678999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhc-CcEEEEeEEEEecCCEEEEc--e---eEEEcceEEEeeCceecC-CCCC---Cce
Q psy14461 160 ATKLIKRFCIRAKN-DSMRELKAL-GIDIVRTAAAFTNPHTIKLS--N---RSVTGFNFLLAVERRCLP-EPRN---SAL 228 (535)
Q Consensus 160 l~~~~~~~~~~~~~-~~~~~~~~~-gV~~~~g~~~~~~~~~v~~~--~---~~~~~d~lViATGs~p~~-~i~G---~~v 228 (535)
+..+++..+.++.. .+...++.. +|+++.|++.+.+++++.+. + .++.||+||||||++|.. ++|| ..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~~~ 175 (479)
T PRK14727 96 LLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTPY 175 (479)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCccce
Confidence 99988888887754 356666655 99999999999999988774 2 469999999999999998 8999 346
Q ss_pred echhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVI 307 (535)
Q Consensus 229 ~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~ 307 (535)
++..+.+.....|++++|||+|++|+|+|..|+++|.+||+++++.+++.+++++.+.+++.|++.||++ +++++++++
T Consensus 176 ~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~ 255 (479)
T PRK14727 176 WTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVE 255 (479)
T ss_pred ecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEE
Confidence 7777777666678999999999999999999999999999998866778899999999999999999999 999999998
Q ss_pred EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCC
Q psy14461 308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPN 387 (535)
Q Consensus 308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~ 387 (535)
.+ ++.+.+.. .++ ++++|.+++|+|++||+..+.++.++++++++|+|.||+++||+.|+|||+|||+ +.+.
T Consensus 256 ~~-~~~~~v~~---~~g---~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~-~~~~ 327 (479)
T PRK14727 256 HD-DNGFVLTT---GHG---ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCS-DLPQ 327 (479)
T ss_pred Ee-CCEEEEEE---cCC---eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeecC-Ccch
Confidence 65 34455544 233 5899999999999999998767888999999999999999999999999999999 8889
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcch
Q psy14461 388 NASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENF 467 (535)
Q Consensus 388 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (535)
+.+.|..||++||.||++.. ..+++..+|+++|++|++|+||+||+||++.+. ++.+...++....+++ +..
T Consensus 328 ~~~~A~~~G~~aa~~i~g~~-~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~~---- 399 (479)
T PRK14727 328 FVYVAAAAGSRAGINMTGGN-ATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGI--ETISRVLTMENVPRAL-ANF---- 399 (479)
T ss_pred hhhHHHHHHHHHHHHHcCCC-cccccccCCcEEEecCceeeeeCCHHHHHHcCC--ceEEEEEEcccCchhh-hcC----
Confidence 99999999999999999864 456777899999999999999999999998843 6766666666555543 221
Q ss_pred hhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 468 VKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
.++||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus 400 ------------------~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 449 (479)
T PRK14727 400 ------------------ETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQ 449 (479)
T ss_pred ------------------CCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcC
Confidence 46899999999999999999999999999999999999999999999874
No 28
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.9e-58 Score=492.48 Aligned_cols=411 Identities=20% Similarity=0.249 Sum_probs=335.0
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---cccccccc----cccchhhccc---ccccccccccCH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPV----AMSDLELEQD---STSALNVTIRNW 157 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~----~i~~~~~~~~---~~~~~~~~~~~~ 157 (535)
-++++|||+|++|+++|+++...+.+|+|||++. +++.. +-+|...+ .+.......+ +.. .....++|
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~-~~~~~~~~ 83 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLS-AQAPVVDR 83 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcc-cCCCccCH
Confidence 4689999999999999999999999999999974 32210 00221100 0000000001 111 01346799
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhc-CcEEEEeEEEEecCCEEEEc--e---eEEEcceEEEeeCceecC-CCCC---C
Q psy14461 158 NAATKLIKRFCIRAKND-SMRELKAL-GIDIVRTAAAFTNPHTIKLS--N---RSVTGFNFLLAVERRCLP-EPRN---S 226 (535)
Q Consensus 158 ~~l~~~~~~~~~~~~~~-~~~~~~~~-gV~~~~g~~~~~~~~~v~~~--~---~~~~~d~lViATGs~p~~-~i~G---~ 226 (535)
..+.++.++.+..+... +...++.. +|+++.|++.+++.+.+.+. + .+++||+||||||++|+. ++|| .
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~ 163 (468)
T PRK14694 84 SALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAET 163 (468)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCCCC
Confidence 99999999888877653 55556554 99999999999887766663 2 479999999999999998 9999 3
Q ss_pred ceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461 227 ALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEK 305 (535)
Q Consensus 227 ~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~ 305 (535)
.++++++.+.+...+++++|||+|++|+|+|..|+++|.+||+++++++++.+++++.+.+++.|+++||++ .++.+++
T Consensus 164 ~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~ 243 (468)
T PRK14694 164 PYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASE 243 (468)
T ss_pred ceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 467778887777778999999999999999999999999999998877788899999999999999999999 9999999
Q ss_pred EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC
Q psy14461 306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK 385 (535)
Q Consensus 306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~ 385 (535)
++.+ ++.+.+.. ++. ++++|.|++|+|++||++++.++.++++. ++|+|.||++++|+.|+|||+|||+ +.
T Consensus 244 i~~~-~~~~~v~~----~~~--~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~-~~ 314 (468)
T PRK14694 244 VDYN-GREFILET----NAG--TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYAAGDCT-DQ 314 (468)
T ss_pred EEEc-CCEEEEEE----CCC--EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEEEeecC-CC
Confidence 9865 34344443 333 69999999999999999987667778876 4799999999999999999999999 88
Q ss_pred CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCc
Q psy14461 386 PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPE 465 (535)
Q Consensus 386 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (535)
+.+.+.|..||++||.||++.. ..+++..+|+++|++|++|+||+||+||++.+. ++.+...++....+++ +..
T Consensus 315 ~~~~~~A~~~G~~aa~~i~~~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~~-- 388 (468)
T PRK14694 315 PQFVYVAAAGGSRAAINMTGGD-ASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGY--DTDSRTLDLENVPRAL-VNF-- 388 (468)
T ss_pred cccHHHHHHHHHHHHHHhcCCC-cccccCCCCeEEECCCCeEEeeCCHHHHHHcCC--ceEEEEEecccchhhh-hcC--
Confidence 9999999999999999999864 456778899999999999999999999998844 6777777776655544 222
Q ss_pred chhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 466 NFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
.+.||+||++|++|++|||+|++|++|+|+|+.+++||++++|++||.++
T Consensus 389 --------------------~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 438 (468)
T PRK14694 389 --------------------DTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADE 438 (468)
T ss_pred --------------------CCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc
Confidence 46899999999999999999999999999999999999999999999875
No 29
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.8e-58 Score=491.19 Aligned_cols=414 Identities=22% Similarity=0.236 Sum_probs=340.0
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---cccc----ccccccchhhccccccc-ccccccCHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLY----YPVAMSDLELEQDSTSA-LNVTIRNWNAA 160 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~----~~~~i~~~~~~~~~~~~-~~~~~~~~~~l 160 (535)
++++|||+|++|+.+|+++...+.+|+|||++ .+++... -+|. ..........+.+++.. .....++|.++
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~ 82 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKLGKKVALIEKG-PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFKKV 82 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHHHH
Confidence 68999999999999999999999999999994 3332210 0111 00000001111122211 11246799999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCce-ecCCCCC------Cceechh
Q psy14461 161 TKLIKRFCIRAKNDS-MRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERR-CLPEPRN------SALISAD 232 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~-p~~~i~G------~~v~~~~ 232 (535)
.++.+.....+...+ ...++..+|+++.|++.+.+.+++.+++.++.||+||||||++ | ++|| ..+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs~~p--~ipg~~~~~~~~~~~~~ 160 (460)
T PRK06292 83 MARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSRVP--PIPGVWLILGDRLLTSD 160 (460)
T ss_pred HHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCCCCC--CCCCCcccCCCcEECch
Confidence 999998888877666 5667778999999999999999998876789999999999999 5 4454 3577888
Q ss_pred hHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461 233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF 310 (535)
Q Consensus 233 ~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~ 310 (535)
+++.+...+++++|||+|++|+|+|..|+++|.+|+++++ +++++.+++++.+.+++.|+++ |++ +++++++++.++
T Consensus 161 ~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~ 239 (460)
T PRK06292 161 DAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSG 239 (460)
T ss_pred HHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcC
Confidence 8888888899999999999999999999999999999999 9999999999999999999999 999 999999998652
Q ss_pred CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHH
Q psy14461 311 DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNAS 390 (535)
Q Consensus 311 ~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~ 390 (535)
+..+.++. .+|+..++++|.+++++|++||++.+.++.++++++++|+|.||+++||+.|+|||+|||+ +.+++++
T Consensus 240 ~~~v~~~~---~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~-~~~~~~~ 315 (460)
T PRK06292 240 DEKVEELE---KGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVN-GKPPLLH 315 (460)
T ss_pred CceEEEEE---cCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecC-CCccchh
Confidence 22344433 2455457999999999999999998767888999999999999999999999999999999 8888999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhh
Q psy14461 391 MAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKL 470 (535)
Q Consensus 391 ~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (535)
.|.+||++||.||++......++..+|+++|++|++++||+||+||++.+. ++.+...++....++. ..
T Consensus 316 ~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~-~~-------- 384 (460)
T PRK06292 316 EAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGI--DYVVGEVPFEAQGRAR-VM-------- 384 (460)
T ss_pred HHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCC--CeEEEEEecccchHHH-hc--------
Confidence 999999999999998544456777899999999999999999999998743 6777777776655543 11
Q ss_pred hhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 471 VCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
+.++||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus 385 --------------~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~ 435 (460)
T PRK06292 385 --------------GKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRM 435 (460)
T ss_pred --------------CCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence 257899999999999999999999999999999999999999999999864
No 30
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.3e-58 Score=489.65 Aligned_cols=417 Identities=16% Similarity=0.185 Sum_probs=341.8
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEec------CCccccccc---ccccccc----cccchhhc---ccccccccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQER------GSHLSFRKK---RRLYYPV----AMSDLELE---QDSTSALNV 152 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~------~~~~~~~~~---~l~~~~~----~i~~~~~~---~~~~~~~~~ 152 (535)
++++|||+|++|+.+|++....+.+|+|+|+ ...+++... .+|...+ .+...... ..+.. ...
T Consensus 5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~-~~~ 83 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH-VDG 83 (475)
T ss_pred eeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc-CCC
Confidence 6899999999999999999999999999998 122222110 1121000 00000000 01111 123
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEec----CCEEEEce---eEEEcceEEEeeCceecC-C-C
Q psy14461 153 TIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTN----PHTIKLSN---RSVTGFNFLLAVERRCLP-E-P 223 (535)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~----~~~v~~~~---~~~~~d~lViATGs~p~~-~-i 223 (535)
..+||.++.+++++.++.+...+...++..+|+++.|++.+.+ .++|.+.+ .+++||+||||||++|+. + +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~~ 163 (475)
T PRK06327 84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGV 163 (475)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCCC
Confidence 4679999999999999988888888889999999999999887 77888752 479999999999999975 4 3
Q ss_pred CC--CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-c
Q psy14461 224 RN--SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-Q 299 (535)
Q Consensus 224 ~G--~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~ 299 (535)
+. ..++++++++.+...|++|+|||+|++|+|+|..|+++|.+||++++ +.+++.+++++.+.+.+.|+++||++ +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~ 243 (475)
T PRK06327 164 PFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHL 243 (475)
T ss_pred CCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEe
Confidence 22 55788888888877899999999999999999999999999999999 99999899999999999999999999 9
Q ss_pred ceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeC
Q psy14461 300 CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG 379 (535)
Q Consensus 300 ~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~G 379 (535)
+++|++++.+ ++.+.+++.+ .+|++.++++|.+++++|++|+++.+.++.++++++++|+|.||++++|+.|+|||+|
T Consensus 244 ~~~v~~i~~~-~~~v~v~~~~-~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~G 321 (475)
T PRK06327 244 GVKIGEIKTG-GKGVSVAYTD-ADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIG 321 (475)
T ss_pred CcEEEEEEEc-CCEEEEEEEe-CCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEE
Confidence 9999999875 3455666542 2355457999999999999999997766788999999999999999999999999999
Q ss_pred CcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCccccc
Q psy14461 380 GIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL 459 (535)
Q Consensus 380 D~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~ 459 (535)
||+ +.+++++.|..||++||.||++.. ...++..+|+++|++|++++||+||+||++.+. ++.+...++....++.
T Consensus 322 D~~-~~~~~~~~A~~~G~~aa~~i~g~~-~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~ 397 (475)
T PRK06327 322 DVV-RGPMLAHKAEEEGVAVAERIAGQK-GHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGV--EYKAGKFPFMANGRAL 397 (475)
T ss_pred ecc-CCcchHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCC--CEEEEEEcccccchhh
Confidence 999 788899999999999999999854 345778899999999999999999999998833 5666666665444432
Q ss_pred CCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
. .+.+.||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus 398 -~----------------------~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 450 (475)
T PRK06327 398 -A----------------------MGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARI 450 (475)
T ss_pred -h----------------------cCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence 1 1256899999999999999999999999999999999999999999999864
No 31
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.2e-57 Score=487.08 Aligned_cols=417 Identities=21% Similarity=0.262 Sum_probs=339.6
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc---ccccccccc-ccch---hhcc--cccccccccccCHH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK---KRRLYYPVA-MSDL---ELEQ--DSTSALNVTIRNWN 158 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~---~~l~~~~~~-i~~~---~~~~--~~~~~~~~~~~~~~ 158 (535)
.++++|||+||+|+.+|+++...+.+|+|||++. +++.. +.+|...+- .+.. .... .+.. .....++|.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~-~~~~~~~~~ 81 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGIS-VSGPALDFA 81 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCcc-CCCCccCHH
Confidence 3689999999999999999999999999999963 33221 012211000 0000 0000 1111 113367999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCC-------EEEEce-----eEEEcceEEEeeCceecC-CCCC
Q psy14461 159 AATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPH-------TIKLSN-----RSVTGFNFLLAVERRCLP-EPRN 225 (535)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~-------~v~~~~-----~~~~~d~lViATGs~p~~-~i~G 225 (535)
++.++++..++.+...+...+++.||+++.|++.+++.+ ++++.. .++.||+||||||++|.. +...
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~ 161 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP 161 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCC
Confidence 999999999999888888888999999999999999888 777642 579999999999999975 3222
Q ss_pred ---CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cc
Q psy14461 226 ---SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QC 300 (535)
Q Consensus 226 ---~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~ 300 (535)
..++++++++.+...+++++|||||++|+|+|..|+++|.+||++++ +.+++.+++++.+.+.+.|+++||++ ++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~ 241 (472)
T PRK05976 162 FDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTG 241 (472)
T ss_pred CCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeC
Confidence 45788999988888899999999999999999999999999999999 99999999999999999999999999 99
Q ss_pred eEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCC
Q psy14461 301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGG 380 (535)
Q Consensus 301 ~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD 380 (535)
+++++++...++.+.+... .+|+++++++|.+++|+|++||++.++++..++..+ +|+|.||++++|+.|+|||+||
T Consensus 242 ~~v~~i~~~~~~~~~~~~~--~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~-~g~i~Vd~~l~ts~~~IyAiGD 318 (472)
T PRK05976 242 AKVLGLTLKKDGGVLIVAE--HNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVE-GGFIQIDDFCQTKERHIYAIGD 318 (472)
T ss_pred cEEEEEEEecCCCEEEEEE--eCCceEEEEeCEEEEeeCCccCCCCCCchhcCceec-CCEEEECCCcccCCCCEEEeee
Confidence 9999997521233333222 266555799999999999999998776667777654 7899999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccC
Q psy14461 381 IVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLD 460 (535)
Q Consensus 381 ~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~ 460 (535)
|+ +.+.+++.|.+||++||.||+|.....+++..+|+++|++|++++||+||+||++.+. ++.+....+....++.
T Consensus 319 ~~-~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~- 394 (472)
T PRK05976 319 VI-GEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGY--DVKVGKFPFAANGKAL- 394 (472)
T ss_pred cC-CCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCC--CEEEEEEECCcchhhh-
Confidence 99 8888999999999999999998765567777899999999999999999999998843 6777666666555543
Q ss_pred CCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 461 PLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
. .+.++||+||++|++|++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus 395 ~----------------------~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 447 (472)
T PRK05976 395 T----------------------YGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGT 447 (472)
T ss_pred h----------------------cCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence 1 1257899999999999999999999999999999999999999999999864
No 32
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.3e-57 Score=497.66 Aligned_cols=411 Identities=20% Similarity=0.219 Sum_probs=337.0
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc--cc-cccc----cccccchhh--cc-cccccccccccCHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK--KR-RLYY----PVAMSDLEL--EQ-DSTSALNVTIRNWN 158 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~--~~-l~~~----~~~i~~~~~--~~-~~~~~~~~~~~~~~ 158 (535)
++++|||+||+|+.+|+++...+.+|+|||++ .+++.. .+ +|.. +..+..... .+ ++.. ......+|.
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 176 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIA-ATVPTIDRS 176 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCcc-CCCCccCHH
Confidence 78999999999999999999999999999997 343221 00 2211 000000000 01 1211 123457899
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhc-CcEEEEeEEEEecCCEEEEc---e--eEEEcceEEEeeCceecC-CCCC-C--c
Q psy14461 159 AATKLIKRFCIRAKND-SMRELKAL-GIDIVRTAAAFTNPHTIKLS---N--RSVTGFNFLLAVERRCLP-EPRN-S--A 227 (535)
Q Consensus 159 ~l~~~~~~~~~~~~~~-~~~~~~~~-gV~~~~g~~~~~~~~~v~~~---~--~~~~~d~lViATGs~p~~-~i~G-~--~ 227 (535)
++.+++++.+.++... +...++.. +|+++.|++.+.+++++.+. + .+++||+||||||++|.. ++|| + .
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~ 256 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKETP 256 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCccc
Confidence 9999988888877653 55666665 89999999999998887773 2 369999999999999988 8999 3 4
Q ss_pred eechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461 228 LISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKV 306 (535)
Q Consensus 228 v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i 306 (535)
+++..+.+.....+++++|||+|++|+|+|..|+++|.+||+++++.+++.+++++.+.+++.|++.||++ +++.++++
T Consensus 257 ~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i 336 (561)
T PRK13748 257 YWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQV 336 (561)
T ss_pred eEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 67777777666778999999999999999999999999999999855677789999999999999999999 99999999
Q ss_pred EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC
Q psy14461 307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP 386 (535)
Q Consensus 307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~ 386 (535)
+.+ ++.+.+.. ++. ++++|.|++|+|++||+..+.++.++++++++|+|.||+++||+.|||||+|||+ +.+
T Consensus 337 ~~~-~~~~~v~~----~~~--~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~-~~~ 408 (561)
T PRK13748 337 AHV-DGEFVLTT----GHG--ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCT-DQP 408 (561)
T ss_pred Eec-CCEEEEEe----cCC--eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeecC-CCc
Confidence 865 34444544 233 5999999999999999998767888999999999999999999999999999999 888
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcc
Q psy14461 387 NNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN 466 (535)
Q Consensus 387 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (535)
.+.+.|..||++||.||+|.. ..+++..+|+++|++|++|+||+||+||++.+. ++.+...++....+++ +..
T Consensus 409 ~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~~--- 481 (561)
T PRK13748 409 QFVYVAAAAGTRAAINMTGGD-AALDLTAMPAVVFTDPQVATVGYSEAEAHHDGI--ETDSRTLTLDNVPRAL-ANF--- 481 (561)
T ss_pred cchhHHHHHHHHHHHHHcCCC-cccCCCCCCeEEEccCCceeeeCCHHHHHHcCC--CeEEEEEecccCchhh-hcC---
Confidence 999999999999999999864 456777899999999999999999999998843 5777776666555543 221
Q ss_pred hhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 467 FVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
.+.||+||++|++|++|||+|++|++|.|+|+.++++|++++|++||.++
T Consensus 482 -------------------~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 531 (561)
T PRK13748 482 -------------------DTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQ 531 (561)
T ss_pred -------------------CCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcc
Confidence 46899999999999999999999999999999999999999999999864
No 33
>KOG4716|consensus
Probab=100.00 E-value=4.1e-58 Score=437.32 Aligned_cols=425 Identities=27% Similarity=0.382 Sum_probs=373.8
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC-c--------------ccccccccccccccccchhh--ccccccccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS-H--------------LSFRKKRRLYYPVAMSDLEL--EQDSTSALN 151 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~-~--------------~~~~~~~l~~~~~~i~~~~~--~~~~~~~~~ 151 (535)
++++|||+|.+|++||-.+...+.+|.++|--. . +++.+..+.+.+.-++.... +..|+..-.
T Consensus 20 yDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~~~e 99 (503)
T KOG4716|consen 20 YDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWNVDE 99 (503)
T ss_pred ccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCCCcc
Confidence 788999999999999999999999999998532 1 11122223322211221111 112333222
Q ss_pred -ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-----eEEEcceEEEeeCceecC-CCC
Q psy14461 152 -VTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLP-EPR 224 (535)
Q Consensus 152 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-----~~~~~d~lViATGs~p~~-~i~ 224 (535)
..+.||..+.+..++.+..+++.++-.+++..|+++...++|++++++...+ +.++++++|||||.+|+. +||
T Consensus 100 ~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrYp~Ip 179 (503)
T KOG4716|consen 100 QKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYPDIP 179 (503)
T ss_pred ccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCCCCCC
Confidence 5788999999999999999999988889999999999999999999988754 578999999999999999 999
Q ss_pred C--CceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cce
Q psy14461 225 N--SALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QCC 301 (535)
Q Consensus 225 G--~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~ 301 (535)
| +..+|++|++.+...|.+.+|||+|++|+|||.+|+-.|.+||+..|+-+++.||+++.+.+.+.|+++||+| ..+
T Consensus 180 G~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~ 259 (503)
T KOG4716|consen 180 GAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKT 259 (503)
T ss_pred CceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecc
Confidence 9 8889999999999999999999999999999999999999999999988899999999999999999999999 888
Q ss_pred EEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecC-CCceEcCCCCCcCCCCEEEeCC
Q psy14461 302 VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKK-KSYVVCNEKDQTSVGNIFAVGG 380 (535)
Q Consensus 302 ~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-~G~i~vd~~~~T~~~~IyA~GD 380 (535)
.+.+++..++++..|....+..+++-+-++|.|+||+|+.++++.++|+.+|+++++ .|.|.+|+.-+|++|+|||+||
T Consensus 260 vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGD 339 (503)
T KOG4716|consen 260 VPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGD 339 (503)
T ss_pred cceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcCCCceEEecc
Confidence 889998876777788777666676667789999999999999999999999999976 6899999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccC
Q psy14461 381 IVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLD 460 (535)
Q Consensus 381 ~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~ 460 (535)
+..+.|.+.+.|++.||..|+.+++......+|..+|.++||..|++++||||++|.+.+|.++++++...|.++.+..
T Consensus 340 Il~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~f~P~E~~i- 418 (503)
T KOG4716|consen 340 ILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTI- 418 (503)
T ss_pred eecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHHHHHhCcccEEEeeccccceEEEc-
Confidence 9988899999999999999999999888899999999999999999999999999999999999999999999999987
Q ss_pred CCCCcchhhhhhccCCcccccccccCcceEEEEEEEC-CCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 461 PLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLK-GGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~-~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
|+++ ....|+|+|+++ ++.+|+|.|++||+|.|+|+.++.|++.++|..+|.++
T Consensus 419 pqrd---------------------~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~nt 473 (503)
T KOG4716|consen 419 PQRD---------------------VRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNT 473 (503)
T ss_pred cccc---------------------CCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhc
Confidence 7765 467899999988 56799999999999999999999999999999999875
No 34
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1.2e-55 Score=471.29 Aligned_cols=416 Identities=22% Similarity=0.287 Sum_probs=344.7
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---ccccccc----cccchhhccccccc-ccccccCHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLYYPV----AMSDLELEQDSTSA-LNVTIRNWNAA 160 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~~~~----~i~~~~~~~~~~~~-~~~~~~~~~~l 160 (535)
++|+|||+|++|+.+|.++...+.+|+|||+ +.+++... .+|...+ .+-........+.. .....++|..+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKM 80 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHH
Confidence 5789999999999999999999999999999 54443211 1121100 00000000111111 12346789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce----eEEEcceEEEeeCceecC-CCC-C---Cceech
Q psy14461 161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN----RSVTGFNFLLAVERRCLP-EPR-N---SALISA 231 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~----~~~~~d~lViATGs~p~~-~i~-G---~~v~~~ 231 (535)
..+.+...+++...+...++..||+++.|++.+.+++++.+.. .++.||+||||||++|+. ++| + ..++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~~ 160 (461)
T TIGR01350 81 QKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVITS 160 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEEcc
Confidence 9999989888888888889999999999999999988887753 479999999999999988 776 4 458899
Q ss_pred hhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS 309 (535)
Q Consensus 232 ~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~ 309 (535)
++.+.+...+++++|||||++|+|+|..|++.|.+||++++ +.+++.+++++.+.+.+.+++.||++ .++++++++.+
T Consensus 161 ~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~ 240 (461)
T TIGR01350 161 TGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKN 240 (461)
T ss_pred hHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEe
Confidence 99988888899999999999999999999999999999999 99999999999999999999999999 99999999875
Q ss_pred CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461 310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA 389 (535)
Q Consensus 310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~ 389 (535)
++.+.+++. +|++.++++|.+++|+|++||+..+.++..+++++++|+|.||+++||+.|+|||+|||+ +.+.++
T Consensus 241 -~~~v~v~~~---~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~-~~~~~~ 315 (461)
T TIGR01350 241 -DDQVVYENK---GGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVI-GGPMLA 315 (461)
T ss_pred -CCEEEEEEe---CCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecC-CCcccH
Confidence 455555553 564347999999999999999985545888999999999999999999999999999999 788899
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461 390 SMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469 (535)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (535)
+.|.+||+.||+||.+.....+++..+|.++|++|+++++|+++++|++.+. ++.+...++....++. .
T Consensus 316 ~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~g~--~~~~~~~~~~~~~~~~-~-------- 384 (461)
T TIGR01350 316 HVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEAGY--DVKIGKFPFAANGKAL-A-------- 384 (461)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhCCC--CeEEEEEeCccchHHH-h--------
Confidence 9999999999999998654356677899999999999999999999999843 5777666665444432 1
Q ss_pred hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
.+.+.||+||++|+++++|||+|++|++|.|+|+.+++||++++|++||.++
T Consensus 385 --------------~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 436 (461)
T TIGR01350 385 --------------LGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKT 436 (461)
T ss_pred --------------cCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence 1257899999999999999999999999999999999999999999999864
No 35
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=3.8e-55 Score=463.01 Aligned_cols=380 Identities=16% Similarity=0.178 Sum_probs=301.6
Q ss_pred EEEEeeCCccHHHHHHHHHh--hCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQ--TNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR 166 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~--~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (535)
.+|+|||+|++|+.+|.... ..+.+|+|||+++++.|.++++|++ +.+.. .++..+..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~---~~~~~-------------~~~~~~~~---- 61 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYY---IGEVV-------------EDRKYALA---- 61 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchh---hcCcc-------------CCHHHccc----
Confidence 36899999999999986553 4478999999999999999999887 33210 01111111
Q ss_pred HHHHHHHHHHHHHHhcCcEEEE-eEEEEec--CCEEEEce------eEEEcceEEEeeCceecC-CCCCCceech---hh
Q psy14461 167 FCIRAKNDSMRELKALGIDIVR-TAAAFTN--PHTIKLSN------RSVTGFNFLLAVERRCLP-EPRNSALISA---DD 233 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~gV~~~~-g~~~~~~--~~~v~~~~------~~~~~d~lViATGs~p~~-~i~G~~v~~~---~~ 233 (535)
.....+.++.||+++. .++..++ .++|.+.+ .++.||+||||||++|+. +++++.+++. .+
T Consensus 62 ------~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~ 135 (438)
T PRK13512 62 ------YTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLED 135 (438)
T ss_pred ------CCHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHH
Confidence 0112334567999876 4555544 56777643 247999999999999987 6665444443 23
Q ss_pred HHhc-----cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461 234 LFRL-----GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKV 306 (535)
Q Consensus 234 ~~~~-----~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i 306 (535)
...+ ...+++++|||||++|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|++.||++ ++.+++++
T Consensus 136 ~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i 215 (438)
T PRK13512 136 TDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAI 215 (438)
T ss_pred HHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEE
Confidence 2221 23578999999999999999999999999999999 88899999999999999999999999 99999999
Q ss_pred EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCC--
Q psy14461 307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-- 384 (535)
Q Consensus 307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~-- 384 (535)
+. . .+++. +|+ ++++|.|++|+|++||++++ +..+++++++|+|.||+++||+.|+|||+|||+ +
T Consensus 216 ~~---~--~v~~~---~g~--~~~~D~vl~a~G~~pn~~~l--~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~-~~~ 282 (438)
T PRK13512 216 NG---N--EVTFK---SGK--VEHYDMIIEGVGTHPNSKFI--ESSNIKLDDKGFIPVNDKFETNVPNIYAIGDII-TSH 282 (438)
T ss_pred eC---C--EEEEC---CCC--EEEeCEEEECcCCCcChHHH--HhcCcccCCCCcEEECCCcccCCCCEEEeeeeE-Eee
Confidence 63 2 35553 566 79999999999999999886 778898888899999999999999999999998 4
Q ss_pred --------CCCcHHHHHHHHHHHHHHHhCCCCC-CCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCc
Q psy14461 385 --------KPNNASMAAISARLIIERLYGMQDQ-LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTF 455 (535)
Q Consensus 385 --------~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~ 455 (535)
.+++++.|.+||+++|+||+|.+.. ..++..+|++.|++|++++||+||+||++. ++.+....+...
T Consensus 283 ~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~----~~~~~~~~~~~~ 358 (438)
T PRK13512 283 YRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF----DYKMVEVTQGAH 358 (438)
T ss_pred eccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccC----CcEEEEEecCCc
Confidence 2467888999999999999985432 226677999999999999999999999975 466555444322
Q ss_pred ccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCc-hhHHHHHHHHHHHCCCCHHHHcC
Q psy14461 456 DNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN-VAGMIFGYSLALRKFLTKAELDG 534 (535)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~-a~e~i~~~~~~i~~~~t~~~l~~ 534 (535)
.... + +++.||+||++|++|++|||+|++|++ |.|+|+.++++|++++|++||.+
T Consensus 359 ~~~~-~-----------------------~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~ 414 (438)
T PRK13512 359 ANYY-P-----------------------GNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTE 414 (438)
T ss_pred CCCc-C-----------------------CCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhh
Confidence 2211 1 257899999999999999999999997 89999999999999999999976
Q ss_pred C
Q psy14461 535 T 535 (535)
Q Consensus 535 ~ 535 (535)
+
T Consensus 415 ~ 415 (438)
T PRK13512 415 F 415 (438)
T ss_pred c
Confidence 3
No 36
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=3.3e-52 Score=442.69 Aligned_cols=384 Identities=20% Similarity=0.219 Sum_probs=296.7
Q ss_pred EEEeeCCccHHHHHHHHHhh--CCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461 90 YLDRIGDEGILLEEELKRQT--NQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF 167 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~--~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (535)
+|+|||+|++|+.+|..... ...+|+|||+++++.|.+++++++ +.+. .....++..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~---~~~~-------------~~~~~~~~~----- 60 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYF---VGGF-------------FDDPNTMIA----- 60 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceE---eccc-------------cCCHHHhhc-----
Confidence 68999999999999975543 356899999999988888888776 2221 001111111
Q ss_pred HHHHHHHHHHHHHhcCcEEEEe-EEEEe--cCCEEEEce----eEEE--cceEEEeeCceecC-CCCC---Cceech---
Q psy14461 168 CIRAKNDSMRELKALGIDIVRT-AAAFT--NPHTIKLSN----RSVT--GFNFLLAVERRCLP-EPRN---SALISA--- 231 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~gV~~~~g-~~~~~--~~~~v~~~~----~~~~--~d~lViATGs~p~~-~i~G---~~v~~~--- 231 (535)
...+.+++.||+++.+ .+..+ +.+++.+.+ ..+. ||+||||||++|.. ++|| +++++.
T Consensus 61 ------~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~ 134 (444)
T PRK09564 61 ------RTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSM 134 (444)
T ss_pred ------CCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCH
Confidence 1124466789998765 45544 456777743 3455 99999999999988 8888 445533
Q ss_pred hhHHhcc-----CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461 232 DDLFRLG-----AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVI 303 (535)
Q Consensus 232 ~~~~~~~-----~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v 303 (535)
.+...+. ..+++++|||+|++|+|+|..|++.|.+|+++++ +++++ .+++++.+.+.+.+++.||++ .++++
T Consensus 135 ~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v 214 (444)
T PRK09564 135 EDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFV 214 (444)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEE
Confidence 3333332 2478999999999999999999999999999999 88886 589999999999999999999 99999
Q ss_pred EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC
Q psy14461 304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH 383 (535)
Q Consensus 304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~ 383 (535)
++++.+ ++...+.. ++. ++++|.+++|+|++||++++ +.+|++++++|+|.||++++|+.|||||+|||+.
T Consensus 215 ~~i~~~-~~~~~v~~----~~~--~i~~d~vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~ 285 (444)
T PRK09564 215 KSLIGE-DKVEGVVT----DKG--EYEADVVIVATGVKPNTEFL--EDTGLKTLKNGAIIVDEYGETSIENIYAAGDCAT 285 (444)
T ss_pred EEEecC-CcEEEEEe----CCC--EEEcCEEEECcCCCcCHHHH--HhcCccccCCCCEEECCCcccCCCCEEEeeeEEE
Confidence 999753 22223333 444 69999999999999999876 7888988888999999999999999999999983
Q ss_pred C---------CCCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCC
Q psy14461 384 G---------KPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPT 454 (535)
Q Consensus 384 ~---------~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~ 454 (535)
. .+++++.|.+||+++|+||+|.+.........+...|++|++++||+||+||++.+. ++.+.......
T Consensus 286 ~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~--~~~~~~~~~~~ 363 (444)
T PRK09564 286 IYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGI--DYKTVFIKDKN 363 (444)
T ss_pred EEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCC--CeEEEEEecCC
Confidence 0 146788999999999999998654332222234566999999999999999998843 56555444321
Q ss_pred cccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCc-hhHHHHHHHHHHHCCCCHHHHc
Q psy14461 455 FDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN-VAGMIFGYSLALRKFLTKAELD 533 (535)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~-a~e~i~~~~~~i~~~~t~~~l~ 533 (535)
.+.+ . .+.+.||+||++|++|++|||+|++|++ +.++|+.++++|++++|++||.
T Consensus 364 -~~~~-~----------------------~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~ 419 (444)
T PRK09564 364 -HTNY-Y----------------------PGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELG 419 (444)
T ss_pred -CCCc-C----------------------CCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHh
Confidence 1111 0 1257899999999999999999999996 8999999999999999999997
Q ss_pred CC
Q psy14461 534 GT 535 (535)
Q Consensus 534 ~~ 535 (535)
++
T Consensus 420 ~~ 421 (444)
T PRK09564 420 MM 421 (444)
T ss_pred hc
Confidence 53
No 37
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=8.8e-49 Score=414.18 Aligned_cols=369 Identities=20% Similarity=0.171 Sum_probs=287.8
Q ss_pred HHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccC-HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14461 104 ELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRN-WNAATKLIKRFCIRAKNDSMRELKAL 182 (535)
Q Consensus 104 al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~ 182 (535)
.|++.....+|||||+++.+.|.+++++.+ ..+. .. ...+.. .....+++..
T Consensus 5 ~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~---~~g~--------------~~~~~~~~~----------~~~~~~~~~~ 57 (427)
T TIGR03385 5 RVRRLDKESDIIVFEKTEDVSFANCGLPYV---IGGV--------------IDDRNKLLA----------YTPEVFIKKR 57 (427)
T ss_pred HHHhhCCCCcEEEEEcCCceeEEcCCCCeE---eccc--------------cCCHHHccc----------CCHHHHHHhc
Confidence 355555678999999999988888888776 2221 01 111111 1112344678
Q ss_pred CcEEEEe-EEEEec--CCEEEEce----eEEE--cceEEEeeCceecC-CCCC---CceechhhHH---hc-----cCCC
Q psy14461 183 GIDIVRT-AAAFTN--PHTIKLSN----RSVT--GFNFLLAVERRCLP-EPRN---SALISADDLF---RL-----GAWP 241 (535)
Q Consensus 183 gV~~~~g-~~~~~~--~~~v~~~~----~~~~--~d~lViATGs~p~~-~i~G---~~v~~~~~~~---~~-----~~~~ 241 (535)
|++++.+ ++..++ .+++.+.+ .++. ||+||||||++|.. ++|| +.+++..++. .+ ...+
T Consensus 58 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~ 137 (427)
T TIGR03385 58 GIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKV 137 (427)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCC
Confidence 9998754 555443 56676642 3577 99999999999998 8998 4455433322 21 1346
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC-CccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEE
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL-LKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRG 318 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~-l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~ 318 (535)
++|+|||||++|+|+|..|++.|.+|+++++ +.+ .+.+++++.+.+.+.|++.||++ .+..+++++.+ +.+ +.+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~-v~~ 214 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV-KVF 214 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE-EEE
Confidence 8999999999999999999999999999999 777 46788999999999999999999 99999999764 333 344
Q ss_pred ecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCC---------CCCcH
Q psy14461 319 FHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG---------KPNNA 389 (535)
Q Consensus 319 ~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~---------~~~~~ 389 (535)
. +|+ ++++|.+++|+|++|+++++ +.++++++++|+|.||++++|+.|+|||+|||+.. .++++
T Consensus 215 ~---~g~--~i~~D~vi~a~G~~p~~~~l--~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~ 287 (427)
T TIGR03385 215 T---SGG--VYQADMVILATGIKPNSELA--KDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLA 287 (427)
T ss_pred c---CCC--EEEeCEEEECCCccCCHHHH--HhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeech
Confidence 2 676 79999999999999999876 77889988899999999999999999999999830 13578
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhh
Q psy14461 390 SMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469 (535)
Q Consensus 390 ~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (535)
+.|.+||++||+||+|.......+..+|+++|++|++++||+||+||++.+. ++.+....+....+.+ +
T Consensus 288 ~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~--~~~~~~~~~~~~~~~~-~-------- 356 (427)
T TIGR03385 288 WGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNI--DYKTVFVKAKTHANYY-P-------- 356 (427)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCC--CeEEEEEecCCCCCcC-C--------
Confidence 8999999999999998654333444678999999999999999999998733 5666554443322221 1
Q ss_pred hhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCc-hhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN-VAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~-a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
+.+.||+||++|++|++|||+|++|++ |.|+|+.++++|++++|++||.++
T Consensus 357 ---------------~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~ 408 (427)
T TIGR03385 357 ---------------GNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFF 408 (427)
T ss_pred ---------------CCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhc
Confidence 256899999999999999999999998 999999999999999999999764
No 38
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.7e-42 Score=388.08 Aligned_cols=368 Identities=16% Similarity=0.135 Sum_probs=283.1
Q ss_pred EEEeeCCccHHHHHHHHHhh----CCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461 90 YLDRIGDEGILLEEELKRQT----NQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK 165 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~----~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (535)
+|+|||+|++|+.++..... .+.+||||+++++++|.++.++.+ +++. .+.+
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~---~~~~---------------~~~~------ 60 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSY---FSHH---------------TAEE------ 60 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHh---HcCC---------------CHHH------
Confidence 68999999999998865432 357999999999999998888766 3321 1222
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeE-EEEecC--CEEEEce-eEEEcceEEEeeCceecC-CCCC---Ccee---chhhH
Q psy14461 166 RFCIRAKNDSMRELKALGIDIVRTA-AAFTNP--HTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALI---SADDL 234 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~~--~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~---~~~~~ 234 (535)
+......+++..||+++.++ +..++. +.|.+.+ .++.||+||||||++|+. ++|| .+++ +.+++
T Consensus 61 -----l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~ 135 (847)
T PRK14989 61 -----LSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDL 135 (847)
T ss_pred -----ccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHH
Confidence 11222356777899999986 444443 4565554 679999999999999998 8998 3343 55666
Q ss_pred Hhc---cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461 235 FRL---GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS 308 (535)
Q Consensus 235 ~~~---~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~ 308 (535)
..+ ...+++++|||||++|+|+|..|+++|.+|+++++ +.+++ .++++..+.+++.|+++||++ ++..+++|..
T Consensus 136 ~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~ 215 (847)
T PRK14989 136 NAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQ 215 (847)
T ss_pred HHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEe
Confidence 544 24578999999999999999999999999999999 88886 689999999999999999999 9999999975
Q ss_pred eCCC-cEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC--
Q psy14461 309 SFDG-MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK-- 385 (535)
Q Consensus 309 ~~~~-~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~-- 385 (535)
+.++ ...+.+ .+|+ ++++|.|++|+|++||++++ +.+|++++++|+|.||++|+|+.|+|||+|||+. .
T Consensus 216 ~~~~~~~~v~~---~dG~--~i~~D~Vv~A~G~rPn~~L~--~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~-~~~ 287 (847)
T PRK14989 216 EGVEARKTMRF---ADGS--ELEVDFIVFSTGIRPQDKLA--TQCGLAVAPRGGIVINDSCQTSDPDIYAIGECAS-WNN 287 (847)
T ss_pred cCCCceEEEEE---CCCC--EEEcCEEEECCCcccCchHH--hhcCccCCCCCcEEECCCCcCCCCCEEEeeccee-EcC
Confidence 4222 334666 3787 89999999999999999865 7889999999999999999999999999999994 3
Q ss_pred --CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCc-EEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCC
Q psy14461 386 --PNNASMAAISARLIIERLYGMQDQLMDYSFLP-VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPL 462 (535)
Q Consensus 386 --~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p-~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (535)
..+++.|..||++||.||+|... .+.....| ...+.+.+++++|.. ... . .+.... .+. ..
T Consensus 288 ~~~gl~~~a~~~a~vaa~~i~g~~~-~~~g~~~~~~lk~~G~~v~s~G~~----~~~-~-~~~~~~--~~~-------~~ 351 (847)
T PRK14989 288 RVFGLVAPGYKMAQVAVDHLLGSEN-AFEGADLSAKLKLLGVDVGGIGDA----HGR-T-PGARSY--VYL-------DE 351 (847)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCc-CCCCcccceEEEECCcceEecccc----cCC-C-CCceeE--EEE-------cC
Confidence 23788999999999999999753 34444445 556778899999931 111 0 011110 010 01
Q ss_pred CCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCc--hhHHHHHHHHHHHCCCCHHHHc
Q psy14461 463 LPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN--VAGMIFGYSLALRKFLTKAELD 533 (535)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~--a~e~i~~~~~~i~~~~t~~~l~ 533 (535)
.+.+|.||++++++++|||++++|+. +.++++.+...+....+.++|.
T Consensus 352 -----------------------~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~l~~~~~~l~ 401 (847)
T PRK14989 352 -----------------------SKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLI 401 (847)
T ss_pred -----------------------CCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHcCCCCccchhhee
Confidence 24789999999999999999999995 4888888877777666666654
No 39
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-37 Score=323.05 Aligned_cols=307 Identities=17% Similarity=0.141 Sum_probs=233.5
Q ss_pred EEEeeCCccHHHHHHH--HHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461 90 YLDRIGDEGILLEEEL--KRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF 167 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al--~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (535)
+++|||+|+||+.+|. ++.....+||||+++++..|.++.++++ +++ ..+..++..
T Consensus 4 ~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~---~~~--------------~~~~~~~~~----- 61 (377)
T PRK04965 4 GIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHV---FSQ--------------GQRADDLTR----- 61 (377)
T ss_pred CEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHH---HhC--------------CCCHHHhhc-----
Confidence 5799999999999875 4445678999999999887776655544 221 111222211
Q ss_pred HHHHHHHHHHHHHhcCcEEEEe-EEEEec--CCEEEEceeEEEcceEEEeeCceecC-CCCC-Cceech---hhHHhcc-
Q psy14461 168 CIRAKNDSMRELKALGIDIVRT-AAAFTN--PHTIKLSNRSVTGFNFLLAVERRCLP-EPRN-SALISA---DDLFRLG- 238 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~gV~~~~g-~~~~~~--~~~v~~~~~~~~~d~lViATGs~p~~-~i~G-~~v~~~---~~~~~~~- 238 (535)
....+++++.||+++.+ ++..++ .+.+.+++..+.||+||||||++|.. ++|| +.+++. .++..+.
T Consensus 62 -----~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~ 136 (377)
T PRK04965 62 -----QSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKSQGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAET 136 (377)
T ss_pred -----CCHHHHHHhCCCEEECCCEEEEEECCCCEEEECCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHH
Confidence 11234566789999865 455544 45677777789999999999999988 8999 444443 3333221
Q ss_pred --CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-CcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc
Q psy14461 239 --AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-FDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM 313 (535)
Q Consensus 239 --~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~ 313 (535)
..+++++|||+|++|+|+|..|++.|.+|+++++ +.+++. +++++...+++.+++.||++ .++.+++++.+ ++.
T Consensus 137 ~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~ 215 (377)
T PRK04965 137 QLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG 215 (377)
T ss_pred HhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE
Confidence 3468999999999999999999999999999999 888764 68889999999999999999 99999999875 344
Q ss_pred EEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC-CCC--CcHH
Q psy14461 314 KGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH-GKP--NNAS 390 (535)
Q Consensus 314 ~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~-~~~--~~~~ 390 (535)
..+++. +|+ ++++|.+++|+|.+|+++++ +.+|++.+ +| |.||++++|+.|+|||+|||++ .+. ....
T Consensus 216 ~~v~~~---~g~--~i~~D~vI~a~G~~p~~~l~--~~~gl~~~-~g-i~vd~~l~ts~~~VyA~GD~a~~~~~~~~~~~ 286 (377)
T PRK04965 216 IRATLD---SGR--SIEVDAVIAAAGLRPNTALA--RRAGLAVN-RG-IVVDSYLQTSAPDIYALGDCAEINGQVLPFLQ 286 (377)
T ss_pred EEEEEc---CCc--EEECCEEEECcCCCcchHHH--HHCCCCcC-CC-EEECCCcccCCCCEEEeeecEeECCceeehHH
Confidence 566663 676 89999999999999999875 66788775 46 9999999999999999999984 111 2455
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCH
Q psy14461 391 MAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSE 433 (535)
Q Consensus 391 ~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te 433 (535)
.|..||++||+||+|.+.........+...+.+.++.++|...
T Consensus 287 ~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 329 (377)
T PRK04965 287 PIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGETQ 329 (377)
T ss_pred HHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCCCC
Confidence 6899999999999997643222222345567789999999754
No 40
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.1e-37 Score=349.75 Aligned_cols=359 Identities=15% Similarity=0.135 Sum_probs=266.6
Q ss_pred EEeeCCccHHHHHHHHH--hh-CCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461 91 LDRIGDEGILLEEELKR--QT-NQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF 167 (535)
Q Consensus 91 v~iiG~G~aG~~~al~~--~~-~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (535)
|+|||+|++|+.+|... .. .+.+||||+++++++|.+..++.+ +.+. .+.+++.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~---l~g~--------------~~~~~l~------ 57 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSV---LQGE--------------ADLDDIT------ 57 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHH---HCCC--------------CCHHHcc------
Confidence 58999999999998543 32 457999999999999988777765 3321 1222221
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC---Ccee---chhhHHh
Q psy14461 168 CIRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALI---SADDLFR 236 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~---~~~~~~~ 236 (535)
....+++++.||+++.++ +..++ .++|.+.+ .++.||+||||||++|+. ++|| ++++ +.+++..
T Consensus 58 -----~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~ 132 (785)
T TIGR02374 58 -----LNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDA 132 (785)
T ss_pred -----CCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHH
Confidence 122356677899999884 55544 45677654 679999999999999998 9998 3444 3344433
Q ss_pred c---cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461 237 L---GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF 310 (535)
Q Consensus 237 ~---~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~ 310 (535)
+ ...+++++|||||++|+|+|..|+++|.+|+++++ +.+++ .++++..+.+.+.+++.||++ ++..++++..+
T Consensus 133 i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~- 211 (785)
T TIGR02374 133 IMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGA- 211 (785)
T ss_pred HHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcC-
Confidence 3 23568999999999999999999999999999999 88875 689999999999999999999 99999999764
Q ss_pred CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC--C-CCC
Q psy14461 311 DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH--G-KPN 387 (535)
Q Consensus 311 ~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~--~-~~~ 387 (535)
+....|++. +|+ ++++|+|++++|++||++++ +.++++++ |.|.||++|||+.|+|||+|||+. + ...
T Consensus 212 ~~~~~v~~~---dG~--~i~~D~Vi~a~G~~Pn~~la--~~~gl~~~--ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~g 282 (785)
T TIGR02374 212 TKADRIRFK---DGS--SLEADLIVMAAGIRPNDELA--VSAGIKVN--RGIIVNDSMQTSDPDIYAVGECAEHNGRVYG 282 (785)
T ss_pred CceEEEEEC---CCC--EEEcCEEEECCCCCcCcHHH--HhcCCccC--CCEEECCCcccCCCCEEEeeecceeCCcccc
Confidence 233456663 787 89999999999999999875 66778775 569999999999999999999984 1 123
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCCCC-CCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcc
Q psy14461 388 NASMAAISARLIIERLYGMQDQLMD-YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN 466 (535)
Q Consensus 388 ~~~~A~~~g~~aa~~i~g~~~~~~~-~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (535)
++..|..||++||.||+|....++. ........+++.+++++|...... +.... .+.+ .
T Consensus 283 l~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~-------~~~~~--~~~d-------~---- 342 (785)
T TIGR02374 283 LVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETE-------RTTSI--KIYD-------E---- 342 (785)
T ss_pred cHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCC-------CcEEE--EEEc-------C----
Confidence 6777999999999999997622222 222234557899999999765321 11111 1110 0
Q ss_pred hhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHH
Q psy14461 467 FVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKA 530 (535)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~ 530 (535)
.+..|.|++++ +++|+|++++|+.. + ...+..++.++..+.
T Consensus 343 -------------------~~~~y~kl~~~--~~rLlGavlvgd~~-~-~~~L~~li~~~~~l~ 383 (785)
T TIGR02374 343 -------------------QKGIYKKLVLS--DDKLLGAVLFGDTS-D-YGRLLDMVLKQADIS 383 (785)
T ss_pred -------------------CCCEEEEEEEE--CCEEEEEEEECCHH-H-HHHHHHHHHcCCCCC
Confidence 23579999997 46899999999743 3 345555666665443
No 41
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=323.89 Aligned_cols=354 Identities=14% Similarity=0.074 Sum_probs=256.7
Q ss_pred EEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461 90 YLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF 167 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (535)
+++|||+|+||+.+|..+... ..+|+|++++++.+|.++.++... +.+. ..+ ...
T Consensus 5 ~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~--~~~~-------------~~~--~~~------ 61 (396)
T PRK09754 5 TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSM--LLED-------------SPQ--LQQ------ 61 (396)
T ss_pred cEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHH--HCCC-------------Ccc--ccc------
Confidence 579999999999998765443 458999999998888765443210 1110 000 000
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC---Cceec---hhhHHh
Q psy14461 168 CIRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALIS---ADDLFR 236 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~~---~~~~~~ 236 (535)
+ ...+.+...+|+++.++ +..++ .+++.+.+ .++.||+||||||++|+. ++++ +++++ .+++..
T Consensus 62 ---~--~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~ 136 (396)
T PRK09754 62 ---V--LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAAR 136 (396)
T ss_pred ---c--CCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHH
Confidence 0 00134556799999885 54543 45677654 679999999999999987 7665 44554 566655
Q ss_pred cc---CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461 237 LG---AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF 310 (535)
Q Consensus 237 ~~---~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~ 310 (535)
+. ..+++++|||+|++|+|+|..|+++|.+||++++ +.+++ .+++++.+.+.+.++++||++ +++.+++++.
T Consensus 137 l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-- 214 (396)
T PRK09754 137 LREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-- 214 (396)
T ss_pred HHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--
Confidence 43 2478999999999999999999999999999999 88886 468888899999999999999 9999999975
Q ss_pred CCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC-CC----
Q psy14461 311 DGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH-GK---- 385 (535)
Q Consensus 311 ~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~-~~---- 385 (535)
++.+.+++ .+|+ ++++|.|++++|.+||+.++ +.++++.+ +.|.||+++||+.|+|||+|||+. ..
T Consensus 215 ~~~~~v~l---~~g~--~i~aD~Vv~a~G~~pn~~l~--~~~gl~~~--~gi~vd~~~~ts~~~IyA~GD~a~~~~~~g~ 285 (396)
T PRK09754 215 GEKVELTL---QSGE--TLQADVVIYGIGISANDQLA--REANLDTA--NGIVIDEACRTCDPAIFAGGDVAITRLDNGA 285 (396)
T ss_pred CCEEEEEE---CCCC--EEECCEEEECCCCChhhHHH--HhcCCCcC--CCEEECCCCccCCCCEEEccceEeeeCCCCC
Confidence 24455666 3677 79999999999999998765 56677653 459999999999999999999983 11
Q ss_pred ---CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCC
Q psy14461 386 ---PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPL 462 (535)
Q Consensus 386 ---~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (535)
+.+++.|..||++||+||+|.... +......|+.+++..+.++|.+.. . .+. ... . +
T Consensus 286 ~~~~~~~~~A~~qg~~aa~ni~g~~~~-~~~~p~~~~~~~~~~~~~~G~~~~---~-----~~~-~~~---~------~- 345 (396)
T PRK09754 286 LHRCESWENANNQAQIAAAAMLGLPLP-LLPPPWFWSDQYSDNLQFIGDMRG---D-----DWL-CRG---N------P- 345 (396)
T ss_pred EEEECcHHHHHHHHHHHHHHhcCCCCC-CCCCCceEEEeCCccEEEeeCCCC---C-----EEE-Eec---C------C-
Confidence 134678999999999999986532 233334477888999999997542 0 111 110 0 0
Q ss_pred CCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCH
Q psy14461 463 LPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTK 529 (535)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~ 529 (535)
....|+.+++ ++++|+|+..+|+. .-...+..+|+.+.++
T Consensus 346 -----------------------~~~~~~~~~~--~~~~l~g~~~~~~~--~~~~~~~~~~~~~~~~ 385 (396)
T PRK09754 346 -----------------------ETQKAIWFNL--QNGVLIGAVTLNQG--REIRPIRKWIQSGKTF 385 (396)
T ss_pred -----------------------CCceEEEEEe--eCCEEEEEEEECCH--HHHHHHHHHHHCCCCC
Confidence 1223554444 36899999999973 3345555677777664
No 42
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=4e-36 Score=318.94 Aligned_cols=327 Identities=17% Similarity=0.154 Sum_probs=238.0
Q ss_pred ccccccCCCCCCChhHHHHh------------hhcCCcEEEEeCCCchh--hHHHH---------------HHHHHh---
Q psy14461 34 TASSCDLLPSFETPPAYISR------------LSYENRILIFTHAVLRE--ENARA---------------ERYLNA--- 81 (535)
Q Consensus 34 ~~~~~~~~p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~--~~~~~---------------k~~~~~--- 81 (535)
+..+| |...+++.|+.. +.+.|++..+..+.||+ +|..+ +++..+
T Consensus 50 C~~~C---P~~~~i~~~~~~~~~~~~~~a~~~~~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~ 126 (464)
T PRK12831 50 CVKGC---PVSINIPGFISKLKEGDFEEAAKIIAKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWAR 126 (464)
T ss_pred hhhhC---CCCCCHHHHHHHHHCCCHHHHHHHHHHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHH
Confidence 33456 777788887654 45668998888999995 68764 333321
Q ss_pred -cC------CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc-cccccccccccchhhccccccccccc
Q psy14461 82 -RG------DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK-KRRLYYPVAMSDLELEQDSTSALNVT 153 (535)
Q Consensus 82 -~~------~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~ 153 (535)
.+ ....-.+|+|||+||+|+++|..+...+.+|+|||+.+.+++.. .++|.+.
T Consensus 127 ~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~------------------- 187 (464)
T PRK12831 127 ENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFR------------------- 187 (464)
T ss_pred HcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCcc-------------------
Confidence 11 11234689999999999999999988999999999987653221 1222220
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce--eEEEcceEEEeeCc-eecC-CCCC---C
Q psy14461 154 IRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN--RSVTGFNFLLAVER-RCLP-EPRN---S 226 (535)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~--~~~~~d~lViATGs-~p~~-~i~G---~ 226 (535)
+....+..+ ..+.++..||+++.++.. .+++.+++ ..+.||+||||||+ .|+. ++|| +
T Consensus 188 -l~~~~~~~~-----------~~~~~~~~gv~i~~~~~v---~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~ 252 (464)
T PRK12831 188 -LPKETVVKK-----------EIENIKKLGVKIETNVVV---GKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLN 252 (464)
T ss_pred -CCccHHHHH-----------HHHHHHHcCCEEEcCCEE---CCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCc
Confidence 011112221 124567789999888742 23444443 34679999999999 6888 9999 5
Q ss_pred ceechhhHHhcc--------------CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc-CCccCcHHHHHHHHHh
Q psy14461 227 ALISADDLFRLG--------------AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR-LLKHFDQEMVRILLSS 290 (535)
Q Consensus 227 ~v~~~~~~~~~~--------------~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~-~l~~~~~~~~~~~~~~ 290 (535)
++++..+++... ..+++|+|||||++|+|+|..|.++|.+||++++ +. .++....++ +.
T Consensus 253 gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~-----~~ 327 (464)
T PRK12831 253 GVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEV-----HH 327 (464)
T ss_pred CcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHH-----HH
Confidence 788888876431 3568999999999999999999999999999998 43 344332222 23
Q ss_pred hhcCCeEE-cceEEEEEEEeCCCcEE-EEEec-----C-C---------CCCceEEEcCEEEEccCCCCCCCCCCccc-c
Q psy14461 291 LTKAGVSI-QCCVIEKVISSFDGMKG-VRGFH-----P-E---------SKEPFADVFKTVVNAMEKKFDFAALNLHH-I 352 (535)
Q Consensus 291 l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~-----~-~---------~G~~~~~~~D~vi~a~G~~p~~~~l~l~~-~ 352 (535)
++++||++ +++.++++..+++++++ |++.. . . +|+++++++|.||+|+|+.|++.++ .. .
T Consensus 328 a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~--~~~~ 405 (464)
T PRK12831 328 AKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLIS--STTK 405 (464)
T ss_pred HHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhh--cccC
Confidence 56789999 99999999764344442 33320 0 0 3455579999999999999999876 44 6
Q ss_pred CeeecCCCceEcCCC-CCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461 353 GVDIKKKSYVVCNEK-DQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 353 gl~~~~~G~i~vd~~-~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 405 (535)
+++++++|+|.||++ ++||.|+|||+|||+ .++.+++.|+.+|+.||.+|..
T Consensus 406 gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~-~g~~~v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 406 GLKINKRGCIVADEETGLTSKEGVFAGGDAV-TGAATVILAMGAGKKAAKAIDE 458 (464)
T ss_pred CceECCCCcEEECCCCCccCCCCEEEeCCCC-CCchHHHHHHHHHHHHHHHHHH
Confidence 888888999999988 999999999999999 7788899999999999999863
No 43
>KOG1336|consensus
Probab=100.00 E-value=6.2e-36 Score=300.90 Aligned_cols=417 Identities=16% Similarity=0.157 Sum_probs=288.9
Q ss_pred hcCCccccccccCCCccccccCCCCCCChhHHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCcc
Q psy14461 19 IHAIPSFHEAKTCSPTASSCDLLPSFETPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEG 98 (535)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~ 98 (535)
=|-.||||.+||.+.++- .+.+|+++++ .++.. -.+..++.-.+++- -. ...-....+ +...+++|+|+|+
T Consensus 14 g~v~cpwhgacfn~~~gd-iedfP~~~sl-~~v~~-~~~~~~m~~~~~~~---~~-~~~~~~~~g--~~ar~fvivGgG~ 84 (478)
T KOG1336|consen 14 GRVRCPWHGACFNLSTGD-IEDFPGLDSL-SRVVV-DNDGQVMQEEKRFK---LV-IVGGGVAAG--YAARHFVIVGGGP 84 (478)
T ss_pred CcccccccceeecCCcCc-hhhCcCccce-eeEEe-cCccceeeecccee---ee-eeccccccc--cccceEEEEcCCc
Confidence 366899999999998865 5569999998 22111 11222322112110 00 000001122 5578899999999
Q ss_pred HHHHHHH--HHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHHHHHHHHHH
Q psy14461 99 ILLEEEL--KRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSM 176 (535)
Q Consensus 99 aG~~~al--~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 176 (535)
+|..|+. ++.....+++|+-++.+++|.+..|+....... ..+.....
T Consensus 85 ~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~------------------------------~~~a~r~~ 134 (478)
T KOG1336|consen 85 GGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVG------------------------------EGLAKRTP 134 (478)
T ss_pred hhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeecc------------------------------ccccccCh
Confidence 8887764 555566789999999999898876665421101 01111223
Q ss_pred HHHHhcCcEEEEeEE-EE--ecCCEEEEce-eEEEcceEEEeeCceecC-CCCC---CceechhhHHh------ccCCCC
Q psy14461 177 RELKALGIDIVRTAA-AF--TNPHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALISADDLFR------LGAWPG 242 (535)
Q Consensus 177 ~~~~~~gV~~~~g~~-~~--~~~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~~~~~~~~------~~~~~k 242 (535)
+++++.+|+++.++- +. ...+++...+ +.+.|++|+||||++|++ ++|| +++.+..++.+ .-....
T Consensus 135 e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~ 214 (478)
T KOG1336|consen 135 EFYKEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGG 214 (478)
T ss_pred hhHhhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCc
Confidence 678889999998863 33 3467777765 899999999999999999 9999 55544333322 223467
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEE
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRG 318 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~ 318 (535)
+|+++|+|++|+|+|..|...+.+||+|++ +.+++ .+.+++.+.++++++++||++ .++.+.+++..+++++ .|.+
T Consensus 215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l 294 (478)
T KOG1336|consen 215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKL 294 (478)
T ss_pred eEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEe
Confidence 899999999999999999999999999999 88887 788999999999999999999 9999999988755554 4666
Q ss_pred ecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC----------Cc
Q psy14461 319 FHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP----------NN 388 (535)
Q Consensus 319 ~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~----------~~ 388 (535)
. +|+ ++++|+|++.+|.+||+.++ +. +..++++|+|.||+++||+.|||||+||+++ .| .-
T Consensus 295 ~---dg~--~l~adlvv~GiG~~p~t~~~--~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~-fp~~~~~~~~~v~H 365 (478)
T KOG1336|consen 295 K---DGK--TLEADLVVVGIGIKPNTSFL--EK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVAT-FPLKGYGEDRRVEH 365 (478)
T ss_pred c---cCC--EeccCeEEEeeccccccccc--cc-cceecccCCEeehhceeeccCCcccccceee-cccccccccccchH
Confidence 4 788 99999999999999999998 44 7778899999999999999999999999995 21 12
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCCc--EEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcc
Q psy14461 389 ASMAAISARLIIERLYGMQDQLMDYSFLP--VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN 466 (535)
Q Consensus 389 ~~~A~~~g~~aa~~i~g~~~~~~~~~~~p--~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (535)
...|..+|+.|...+....... +..+| ++.++...+-+-|.. .+ +. +... .
T Consensus 366 ~~~A~~~g~~av~ai~~~~~~~--~~~lPyf~t~~f~~~~~~~G~g-------~~--~~-v~~G------------~--- 418 (478)
T KOG1336|consen 366 VDHARASGRQAVKAIKMAPQDA--YDYLPYFYTRFFSLSWRFAGDG-------VG--DV-VLFG------------D--- 418 (478)
T ss_pred HHHHHHHHHhhhhhhhccCccc--ccccchHHHHHhhhhccccCcC-------cc--ce-eeec------------c---
Confidence 2358888886665554433222 33344 333333322222221 00 00 0000 0
Q ss_pred hhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHH
Q psy14461 467 FVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAEL 532 (535)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l 532 (535)
.+...|+--+++ +..+|+..-|- -.+..+.++-.++++-.++.+
T Consensus 419 ------------------~e~~~f~ay~~k---~~~v~a~~~~g-~~~~~~~~a~l~~~~~~v~~~ 462 (478)
T KOG1336|consen 419 ------------------LEPGSFGAYWIK---GDKVGAVAEGG-RDEEVSQFAKLARQGPEVTSL 462 (478)
T ss_pred ------------------cccccceeeEee---ccEEEEEeccC-CChHHHHHHHHHhcCCcchhh
Confidence 022336666663 67777776654 488899999999999877643
No 44
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=1.2e-35 Score=314.64 Aligned_cols=328 Identities=16% Similarity=0.145 Sum_probs=237.0
Q ss_pred CccccccCCCCCCChhHHHHh------------hhcCCcEEEEeCCCchh--hHHHH-------------------HHHH
Q psy14461 33 PTASSCDLLPSFETPPAYISR------------LSYENRILIFTHAVLRE--ENARA-------------------ERYL 79 (535)
Q Consensus 33 ~~~~~~~~~p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~--~~~~~-------------------k~~~ 79 (535)
++..+| |.-.+++.|+.. +.+.|++.....+.||+ .|..+ +++.
T Consensus 37 ~C~~~C---P~~~~i~~~~~~~~~g~~~~A~~~~~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~ 113 (449)
T TIGR01316 37 PCIKGC---PVHVPIPEFIAKIQEGDFKGAVDIIKTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFV 113 (449)
T ss_pred ChhhhC---CCCCCHHHHHHHHHCCCHHHHHHHHHHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHH
Confidence 344568 777888888653 56668888888899995 57643 1211
Q ss_pred H----hcCC-------cceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccc
Q psy14461 80 N----ARGD-------RFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTS 148 (535)
Q Consensus 80 ~----~~~~-------~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~ 148 (535)
. ..+. ...-.+|+|||+|++|+.+|..+...+.+|+|||+.+.+++ +..+ +++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG----~l~~--gip~~-------- 179 (449)
T TIGR01316 114 ADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGG----VVTY--GIPEF-------- 179 (449)
T ss_pred HhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc----Eeee--cCCCc--------
Confidence 1 1111 11236899999999999999988888999999999875532 2211 01110
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCc-eecC-CCCC-
Q psy14461 149 ALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVER-RCLP-EPRN- 225 (535)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs-~p~~-~i~G- 225 (535)
..+ .++..+ ....++..||+++.++.. .+++++.+....||+||||||+ .|+. ++||
T Consensus 180 -----~~~-~~~~~~-----------~~~~l~~~gv~~~~~~~v---~~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~ 239 (449)
T TIGR01316 180 -----RLP-KEIVVT-----------EIKTLKKLGVTFRMNFLV---GKTATLEELFSQYDAVFIGTGAGLPKLMNIPGE 239 (449)
T ss_pred -----cCC-HHHHHH-----------HHHHHHhCCcEEEeCCcc---CCcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCC
Confidence 111 112211 124466789999988742 3445554434579999999998 6887 8999
Q ss_pred --CceechhhHHhc---------------cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC-CccCcHHHHHH
Q psy14461 226 --SALISADDLFRL---------------GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL-LKHFDQEMVRI 286 (535)
Q Consensus 226 --~~v~~~~~~~~~---------------~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~-l~~~~~~~~~~ 286 (535)
.++++..+++.. ...+++|+|||||++|+|+|..+.++|.+||++++ ++. ++... .
T Consensus 240 ~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~-----~ 314 (449)
T TIGR01316 240 ELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARV-----E 314 (449)
T ss_pred CCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCH-----H
Confidence 567887776532 12458999999999999999999999999999998 542 22221 2
Q ss_pred HHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEec------CCC---------CCceEEEcCEEEEccCCCCCCCCCCc
Q psy14461 287 LLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFH------PES---------KEPFADVFKTVVNAMEKKFDFAALNL 349 (535)
Q Consensus 287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~------~~~---------G~~~~~~~D~vi~a~G~~p~~~~l~l 349 (535)
..+.++++||++ +++.++++..++++++ .|++.. ..+ |+++++++|.||+|+|+.|++.++
T Consensus 315 ~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l-- 392 (449)
T TIGR01316 315 EIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMA-- 392 (449)
T ss_pred HHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhh--
Confidence 234567889999 9999999976434444 344431 012 344579999999999999998765
Q ss_pred cccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461 350 HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 350 ~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 405 (535)
+..+++++++|+|.||++++|+.|+|||+|||+ .++.++..|+.||+.||.+|..
T Consensus 393 ~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~-~g~~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 393 ETTRLKTSERGTIVVDEDQRTSIPGVFAGGDII-LGAATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred hccCcccCCCCeEEeCCCCccCCCCEEEecCCC-CCcHHHHHHHHHHHHHHHHHHh
Confidence 677888888999999999999999999999999 7888999999999999999853
No 45
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=7.3e-35 Score=329.43 Aligned_cols=340 Identities=14% Similarity=0.081 Sum_probs=246.4
Q ss_pred CCccccccccC---CCccccccCCCCCCChhHHHH------------hhhcCCcEEEEeCCCchh--hHHHH--------
Q psy14461 21 AIPSFHEAKTC---SPTASSCDLLPSFETPPAYIS------------RLSYENRILIFTHAVLRE--ENARA-------- 75 (535)
Q Consensus 21 ~~~~~~~~~~~---~~~~~~~~~~p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp~--~~~~~-------- 75 (535)
..||||.+.+. .....+| |..++++.|+. .+.+.|++..++.+.||+ .|..+
T Consensus 194 ~~p~C~~~~~~~~~~~~~~~C---P~~~~Ip~~i~~i~~g~~~~A~~~i~~~np~p~~~GrVCp~~~~CE~~C~~~~~pV 270 (944)
T PRK12779 194 DDKPCELGVLVQGKAEPKGGC---PVKIHIPEMLDLLGNGKHREALELIESCNPLPNVTGRVCPQELQCQGVCTHTKRPI 270 (944)
T ss_pred CCCCCCCCcccccccCcCCCC---cCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhHHhcCcCCCccCHHHhccCCCcCc
Confidence 56889876555 2234578 66677776644 467789999999999995 47654
Q ss_pred -----HHHHHhc------------C------CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-ccccc
Q psy14461 76 -----ERYLNAR------------G------DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-KKRRL 131 (535)
Q Consensus 76 -----k~~~~~~------------~------~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-~~~l~ 131 (535)
++...+. . .+..-.+|+|||+||||+++|..+...+++|||||+.+.+++. ..++|
T Consensus 271 ~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP 350 (944)
T PRK12779 271 EIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIP 350 (944)
T ss_pred chhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCC
Confidence 2211110 0 0112367899999999999999999999999999998866432 12233
Q ss_pred cccccccchhhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcce
Q psy14461 132 YYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFN 210 (535)
Q Consensus 132 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~ 210 (535)
.+ .. ..+++++. .+.++..||+|+.+.. -++++++++ ....||+
T Consensus 351 ~~--------------------rl-p~~vi~~~-----------i~~l~~~Gv~f~~n~~---vG~dit~~~l~~~~yDA 395 (944)
T PRK12779 351 EF--------------------RL-PNQLIDDV-----------VEKIKLLGGRFVKNFV---VGKTATLEDLKAAGFWK 395 (944)
T ss_pred CC--------------------cC-hHHHHHHH-----------HHHHHhhcCeEEEeEE---eccEEeHHHhccccCCE
Confidence 22 11 11233322 2556778999998874 245677665 4467999
Q ss_pred EEEeeCce-ecC-CCCC---CceechhhHHhcc----------------CCCCcEEEECCChHHHHHHHHHHhCCCcEEE
Q psy14461 211 FLLAVERR-CLP-EPRN---SALISADDLFRLG----------------AWPGKTLVLGGSLMAVEIAATLNFLGVPVTL 269 (535)
Q Consensus 211 lViATGs~-p~~-~i~G---~~v~~~~~~~~~~----------------~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtl 269 (535)
||||||++ |+. +||| ++++++.+++... ..+++|+|||||++|+|+|..+.++|++||+
T Consensus 396 V~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtl 475 (944)
T PRK12779 396 IFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTI 475 (944)
T ss_pred EEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence 99999995 777 9999 6788888887420 1358999999999999999999999999999
Q ss_pred EEc-C-cCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC-cEE-EEEe------c--------CCCCCceEEE
Q psy14461 270 VYS-R-RLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG-MKG-VRGF------H--------PESKEPFADV 330 (535)
Q Consensus 270 v~~-~-~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~-~~~-v~~~------~--------~~~G~~~~~~ 330 (535)
+++ + ..+|....++. . ..++||++ ++..+++|..++++ .++ +++. . ..+|++++++
T Consensus 476 v~rr~~~~mpa~~~e~~----~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~ 550 (944)
T PRK12779 476 VYRRTKSEMPARVEELH----H-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVP 550 (944)
T ss_pred EEecCcccccccHHHHH----H-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEE
Confidence 998 4 34554333332 2 23569999 99999999765222 231 2221 0 0135566899
Q ss_pred cCEEEEccCCCCCCCCCCccccCeeecCCCceEcCC-CCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461 331 FKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE-KDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 331 ~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 405 (535)
+|.||+|+|+.|+.... ....+++++++|.|.||+ +++||.|+|||+|||+ .++.++..|+.+|+.||.+|..
T Consensus 551 aD~VI~AiG~~p~~~l~-~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~-~G~~~vv~Ai~eGr~AA~~I~~ 624 (944)
T PRK12779 551 VDLVIMALGNTANPIMK-DAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAA-RGGSTAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred CCEEEEcCCcCCChhhh-hcccCceECCCCCEEECCCCCccCCCCEEEEEcCC-CChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997543 234578889999999996 5899999999999999 7788999999999999999964
No 46
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=3.8e-34 Score=301.59 Aligned_cols=275 Identities=16% Similarity=0.092 Sum_probs=214.2
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC 168 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (535)
.+|+|||+|.+|+.++.++.....+|||||+++++.|.+ .++++ +.+ ..+..++..
T Consensus 11 ~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~-~l~~~---~~g--------------~~~~~~~~~------ 66 (424)
T PTZ00318 11 PNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTP-LLPQT---TTG--------------TLEFRSICE------ 66 (424)
T ss_pred CeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhh-hHHHh---ccc--------------CCChHHhHH------
Confidence 468999999999999876655568999999999876653 34433 222 112222221
Q ss_pred HHHHHHHHHHHHhcCcEEEEeEEEEec--CCEEEE----------c-eeEEEcceEEEeeCceecC-CCCC--Cce---e
Q psy14461 169 IRAKNDSMRELKALGIDIVRTAAAFTN--PHTIKL----------S-NRSVTGFNFLLAVERRCLP-EPRN--SAL---I 229 (535)
Q Consensus 169 ~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~~v~~----------~-~~~~~~d~lViATGs~p~~-~i~G--~~v---~ 229 (535)
.+...++..+++++.+++..+| .+.|.+ . +.++.||+||||||++|.. ++|| +++ .
T Consensus 67 -----~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~ 141 (424)
T PTZ00318 67 -----PVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLK 141 (424)
T ss_pred -----HHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCC
Confidence 2335566678999999988765 567777 2 2579999999999999988 8999 332 2
Q ss_pred chhhHHhcc--------------------CCCCcEEEECCChHHHHHHHHHHh--------------CCCcEEEEEc-Cc
Q psy14461 230 SADDLFRLG--------------------AWPGKTLVLGGSLMAVEIAATLNF--------------LGVPVTLVYS-RR 274 (535)
Q Consensus 230 ~~~~~~~~~--------------------~~~k~vvViGgG~~g~e~A~~l~~--------------~g~~Vtlv~~-~~ 274 (535)
+.+++..+. ...++++|||||++|+|+|..|+. .+.+||++++ ++
T Consensus 142 ~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 142 EVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 333322210 012489999999999999999875 3789999999 89
Q ss_pred CCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccC
Q psy14461 275 LLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG 353 (535)
Q Consensus 275 ~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~g 353 (535)
+++.+++++.+.+++.|+++||++ .+++|+++..+ .|+++ +|+ ++++|.+++++|.+|+. ++ +.++
T Consensus 222 ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~-----~v~~~---~g~--~i~~d~vi~~~G~~~~~-~~--~~~~ 288 (424)
T PTZ00318 222 VLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK-----EVVLK---DGE--VIPTGLVVWSTGVGPGP-LT--KQLK 288 (424)
T ss_pred ccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC-----EEEEC---CCC--EEEccEEEEccCCCCcc-hh--hhcC
Confidence 999999999999999999999999 99999999742 35563 677 89999999999999984 44 6678
Q ss_pred eeecCCCceEcCCCCC-cCCCCEEEeCCcCC----CCCCcHHHHHHHHHHHHHHHhC
Q psy14461 354 VDIKKKSYVVCNEKDQ-TSVGNIFAVGGIVH----GKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 354 l~~~~~G~i~vd~~~~-T~~~~IyA~GD~~~----~~~~~~~~A~~~g~~aa~~i~g 405 (535)
++++++|+|.||+++| |+.|||||+|||+. ..++.+..|++||+++|+||.+
T Consensus 289 l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 289 VDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNN 345 (424)
T ss_pred CcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 8888899999999999 69999999999994 1366788999999999999975
No 47
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=7.9e-34 Score=316.04 Aligned_cols=343 Identities=16% Similarity=0.167 Sum_probs=244.3
Q ss_pred chhhhcCCccccccccCCCccccccCCCCCCChhHHHHh------------hhcCCcEEEEeCCCchhhHHHH-------
Q psy14461 15 GLNAIHAIPSFHEAKTCSPTASSCDLLPSFETPPAYISR------------LSYENRILIFTHAVLREENARA------- 75 (535)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~~~~~~------- 75 (535)
+-+.++..+++. .+...|+..+| |...+++.|+.. +.+.|++...+.+.||++|..+
T Consensus 431 ~~~~~~~~~p~~-~c~~aPC~~~C---P~~~dIp~yi~li~~g~~~~A~~~I~~~nPlP~icGrVCph~Ce~~C~R~~~d 506 (1019)
T PRK09853 431 ESRKVAEDLPLT-DCYVAPCVTAC---PINQDIPEYIRLVGEGRYAEALELIYQRNALPAITGHICDHQCQYNCTRLDYD 506 (1019)
T ss_pred ccccccccCCcc-CCCCCccccCC---CCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhhHhhCcCCchhHHHhcCCCCC
Confidence 334444444421 22335666778 888888888653 5667898888899999988764
Q ss_pred --------HHHHHhc-------C---C--cceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccc
Q psy14461 76 --------ERYLNAR-------G---D--RFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPV 135 (535)
Q Consensus 76 --------k~~~~~~-------~---~--~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~ 135 (535)
|+..... . . ...-.+|+|||+||+|+++|..+...+.+|+|||+.+.+++. ..+
T Consensus 507 ~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~----lr~-- 580 (1019)
T PRK09853 507 EAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGV----VKN-- 580 (1019)
T ss_pred CCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcc----eee--
Confidence 3333211 0 0 112357999999999999999998899999999998876432 211
Q ss_pred cccchhhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEe
Q psy14461 136 AMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLA 214 (535)
Q Consensus 136 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViA 214 (535)
.+++. .+. .++..+ ..+.++..||+++.++.. .+.++. ....||+||||
T Consensus 581 ~IP~~-------------Rlp-~evL~~-----------die~l~~~GVe~~~gt~V-----di~le~L~~~gYDaVILA 630 (1019)
T PRK09853 581 IIPQF-------------RIP-AELIQH-----------DIEFVKAHGVKFEFGCSP-----DLTVEQLKNEGYDYVVVA 630 (1019)
T ss_pred ecccc-------------ccc-HHHHHH-----------HHHHHHHcCCEEEeCcee-----EEEhhhheeccCCEEEEC
Confidence 02211 011 111111 124566789999988643 234433 45679999999
Q ss_pred eCceec-C-CCCC--CceechhhHHhc-------cCCCCcEEEECCChHHHHHHHHHHhC-C-CcEEEEEc-C-cCCccC
Q psy14461 215 VERRCL-P-EPRN--SALISADDLFRL-------GAWPGKTLVLGGSLMAVEIAATLNFL-G-VPVTLVYS-R-RLLKHF 279 (535)
Q Consensus 215 TGs~p~-~-~i~G--~~v~~~~~~~~~-------~~~~k~vvViGgG~~g~e~A~~l~~~-g-~~Vtlv~~-~-~~l~~~ 279 (535)
||+++. . ++|| +++++..+++.. ...+++|+|||||++|+|+|..+.+. | .+|+++++ + ..+|..
T Consensus 631 TGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~ 710 (1019)
T PRK09853 631 IGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAW 710 (1019)
T ss_pred cCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCccccccc
Confidence 999854 4 7888 457766665532 13579999999999999999999888 4 48999998 4 566766
Q ss_pred cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEE---Eec---------CCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461 280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVR---GFH---------PESKEPFADVFKTVVNAMEKKFDFAA 346 (535)
Q Consensus 280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~---~~~---------~~~G~~~~~~~D~vi~a~G~~p~~~~ 346 (535)
++++.+.+ ++||++ ++..+.++.. ++++.+. +.. ...|+.+++++|.||+|+|.+|++++
T Consensus 711 ~eEle~Al-----eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel 783 (1019)
T PRK09853 711 REEYEEAL-----EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL 783 (1019)
T ss_pred HHHHHHHH-----HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH
Confidence 55544332 469999 9999998864 2333221 100 01244458999999999999999998
Q ss_pred CCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy14461 347 LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ 407 (535)
Q Consensus 347 l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~ 407 (535)
+ +..|++++++|+|.||++++|+.|+|||+|||+ .++.++..|+.||+.||++|++..
T Consensus 784 l--e~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a-~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 784 L--KANGIPLDKKGWPVVDANGETSLTNVYMIGDVQ-RGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred H--HhcCccccCCCCEEeCCCcccCCCCEEEEeccc-cCchHHHHHHHHHHHHHHHHhhhc
Confidence 7 677888888999999999999999999999999 788899999999999999998744
No 48
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=2.6e-33 Score=313.56 Aligned_cols=328 Identities=16% Similarity=0.192 Sum_probs=238.6
Q ss_pred ccCCCccccccCCCCCCChhHHHHh------------hhcCCcEEEEeCCCchhhHHHH---------------HHHHHh
Q psy14461 29 KTCSPTASSCDLLPSFETPPAYISR------------LSYENRILIFTHAVLREENARA---------------ERYLNA 81 (535)
Q Consensus 29 ~~~~~~~~~~~~~p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~~~~~~---------------k~~~~~ 81 (535)
++..|+..+| |...+++.|+.. +.+.|+....+.+.||++|..+ |+...+
T Consensus 442 c~~aPC~~~C---P~~~dIp~yi~~i~~g~~~~A~~vi~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d 518 (1012)
T TIGR03315 442 CYVAPCTTGC---PINQDIPEYIRLVGEKRYLEALEVIYDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAE 518 (1012)
T ss_pred CCCCccccCC---CCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHh
Confidence 3446777788 888889888663 5667888888899999888764 333321
Q ss_pred c-----C-------CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc-ccccccccccchhhcccccc
Q psy14461 82 R-----G-------DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK-RRLYYPVAMSDLELEQDSTS 148 (535)
Q Consensus 82 ~-----~-------~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~-~l~~~~~~i~~~~~~~~~~~ 148 (535)
. . ....-.+|+|||+||||+++|..+...+.+|+|||+.+.+++... .+|.+
T Consensus 519 ~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~--------------- 583 (1012)
T TIGR03315 519 KGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEF--------------- 583 (1012)
T ss_pred hHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeeccccc---------------
Confidence 1 0 011235899999999999999999999999999999987643311 11211
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCceecC--CCCC
Q psy14461 149 ALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRCLP--EPRN 225 (535)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p~~--~i~G 225 (535)
.... +...+ ..+.+...||+++.+.. ..+++.. ....||+||||||+++.. +++|
T Consensus 584 -----rlp~-e~l~~-----------~ie~l~~~GVe~~~g~~-----~d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G 641 (1012)
T TIGR03315 584 -----RISA-ESIQK-----------DIELVKFHGVEFKYGCS-----PDLTVAELKNQGYKYVILAIGAWKHGPLRLEG 641 (1012)
T ss_pred -----CCCH-HHHHH-----------HHHHHHhcCcEEEEecc-----cceEhhhhhcccccEEEECCCCCCCCCCCcCC
Confidence 0111 11111 12456677999988742 1233333 456799999999998544 7888
Q ss_pred --CceechhhHHhc-------cCCCCcEEEECCChHHHHHHHHHHhC-CC-cEEEEEc-C-cCCccCcHHHHHHHHHhhh
Q psy14461 226 --SALISADDLFRL-------GAWPGKTLVLGGSLMAVEIAATLNFL-GV-PVTLVYS-R-RLLKHFDQEMVRILLSSLT 292 (535)
Q Consensus 226 --~~v~~~~~~~~~-------~~~~k~vvViGgG~~g~e~A~~l~~~-g~-~Vtlv~~-~-~~l~~~~~~~~~~~~~~l~ 292 (535)
+.+++..+++.. ...+++|+|||||++|+|+|..+.+. |. +|+++++ . ..++..++++...+
T Consensus 642 ~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~al----- 716 (1012)
T TIGR03315 642 GGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEAL----- 716 (1012)
T ss_pred CCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHH-----
Confidence 467776666542 24579999999999999999999887 75 8999998 4 55666655543332
Q ss_pred cCCeEE-cceEEEEEEEeCCCcEEEEEe------------cCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCC
Q psy14461 293 KAGVSI-QCCVIEKVISSFDGMKGVRGF------------HPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKK 359 (535)
Q Consensus 293 ~~gV~i-~~~~v~~i~~~~~~~~~v~~~------------~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~ 359 (535)
++||++ ++..+.+++ ++.+.+... ...+|++.++++|.||+|+|++|+++++ +..+++++++
T Consensus 717 eeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~ll--e~~GL~ld~~ 791 (1012)
T TIGR03315 717 EDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLL--QKNGIPLDEY 791 (1012)
T ss_pred HcCCEEEeCCceEEEE---CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHH--HhcCcccCCC
Confidence 469999 888888886 233332210 0014666689999999999999999886 6778988989
Q ss_pred CceEcCCC-CCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy14461 360 SYVVCNEK-DQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ 407 (535)
Q Consensus 360 G~i~vd~~-~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~ 407 (535)
|+|.||++ ++|+.|+|||+|||+ .+|.++..|+.||+.||.+|++..
T Consensus 792 G~I~VD~~~~~Ts~pgVFAaGD~a-~GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 792 GWPVVNQATGETNITNVFVIGDAN-RGPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred CCEEeCCCCCccCCCCEEEEeCcC-CCccHHHHHHHHHHHHHHHHhccc
Confidence 99999986 899999999999999 788899999999999999999653
No 49
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=2.7e-33 Score=284.70 Aligned_cols=276 Identities=18% Similarity=0.142 Sum_probs=217.6
Q ss_pred EEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR 166 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (535)
.+|+|+|+|.+|+.++...... +.+|||||+.++..+.+- ++.. ..+ .++..
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~pl-L~ev---a~g--------------~l~~~-------- 57 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPL-LYEV---ATG--------------TLSES-------- 57 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchh-hhhh---hcC--------------CCChh--------
Confidence 4689999999999999877654 488999999998766531 2211 111 11222
Q ss_pred HHHHHHHHHHHHHHhcC-cEEEEeEEEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC--Cc---eechhhHHh
Q psy14461 167 FCIRAKNDSMRELKALG-IDIVRTAAAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN--SA---LISADDLFR 236 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~g-V~~~~g~~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G--~~---v~~~~~~~~ 236 (535)
++...++..++..+ |+++.+++..+| .++|++++ .++.||+||||+|+.+.. .+|| ++ +.+.+|+.+
T Consensus 58 ---~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ 134 (405)
T COG1252 58 ---EIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALR 134 (405)
T ss_pred ---heeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHH
Confidence 22233446666454 999999988865 67899887 789999999999999999 9999 33 456666654
Q ss_pred cc-----------CCC-----CcEEEECCChHHHHHHHHHHhCC-------------CcEEEEEc-CcCCccCcHHHHHH
Q psy14461 237 LG-----------AWP-----GKTLVLGGSLMAVEIAATLNFLG-------------VPVTLVYS-RRLLKHFDQEMVRI 286 (535)
Q Consensus 237 ~~-----------~~~-----k~vvViGgG~~g~e~A~~l~~~g-------------~~Vtlv~~-~~~l~~~~~~~~~~ 286 (535)
++ ..+ ..++|+|||++|+|+|..|+.+- .+|+++++ ++++|.++++++++
T Consensus 135 ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~ 214 (405)
T COG1252 135 LRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKY 214 (405)
T ss_pred HHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHH
Confidence 31 112 26999999999999999886541 38999999 99999999999999
Q ss_pred HHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccc-cCeeecCCCceEc
Q psy14461 287 LLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHH-IGVDIKKKSYVVC 364 (535)
Q Consensus 287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~-~gl~~~~~G~i~v 364 (535)
.++.|++.||++ +++.|++++++ .|++. +|++ ++++|.++|++|.+++... ++ .+++.|.+|++.|
T Consensus 215 a~~~L~~~GV~v~l~~~Vt~v~~~-----~v~~~---~g~~-~I~~~tvvWaaGv~a~~~~---~~l~~~e~dr~Grl~V 282 (405)
T COG1252 215 AERALEKLGVEVLLGTPVTEVTPD-----GVTLK---DGEE-EIPADTVVWAAGVRASPLL---KDLSGLETDRRGRLVV 282 (405)
T ss_pred HHHHHHHCCCEEEcCCceEEECCC-----cEEEc---cCCe-eEecCEEEEcCCCcCChhh---hhcChhhhccCCCEEe
Confidence 999999999999 99999999864 25553 5552 5999999999999998754 44 4688888899999
Q ss_pred CCCCCc-CCCCEEEeCCcCC--C---CCCcHHHHHHHHHHHHHHHhC
Q psy14461 365 NEKDQT-SVGNIFAVGGIVH--G---KPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 365 d~~~~T-~~~~IyA~GD~~~--~---~~~~~~~A~~~g~~aa~~i~g 405 (535)
|+++++ +.|+|||+|||+. . -|+.+..|++||+.+|+||..
T Consensus 283 ~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~ 329 (405)
T COG1252 283 NPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKA 329 (405)
T ss_pred CCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence 999986 8999999999996 2 267888999999999999973
No 50
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=3.5e-33 Score=300.91 Aligned_cols=281 Identities=15% Similarity=0.113 Sum_probs=202.1
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF 167 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (535)
.++|+|||+||+|+++|+.+...+.+|+|+++. +++....... +.+ +.+ .....+.++..+
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~----~~~----~~~-----~~~~~~~~l~~~---- 272 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVG----IEN----LIS-----VPYTTGSQLAAN---- 272 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcC----ccc----ccc-----cCCCCHHHHHHH----
Confidence 378999999999999999999999999999752 3222110000 110 000 112234444333
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeE-EEEe--cC--CEEEEce-eEEEcceEEEeeCceecC-CCCC-C-----ceechhhH
Q psy14461 168 CIRAKNDSMRELKALGIDIVRTA-AAFT--NP--HTIKLSN-RSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDL 234 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~--~~v~~~~-~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~ 234 (535)
+.+.++..||+++.+. +..+ +. ..+.+.+ ..+.||+||+|||++|+. ++|| . .++.....
T Consensus 273 -------l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~ 345 (515)
T TIGR03140 273 -------LEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHC 345 (515)
T ss_pred -------HHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeecc
Confidence 2355667789988753 4333 22 2344433 579999999999999988 8888 1 12211111
Q ss_pred HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCC
Q psy14461 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTK-AGVSI-QCCVIEKVISSFD 311 (535)
Q Consensus 235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~ 311 (535)
......+++|+|||||++|+|+|..|++.+.+||++++ +.+.. ...+.+.+++ +||++ +++.++++..+ +
T Consensus 346 ~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~ 418 (515)
T TIGR03140 346 DGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------DKVLQDKLKSLPNVDILTSAQTTEIVGD-G 418 (515)
T ss_pred ChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------hHHHHHHHhcCCCCEEEECCeeEEEEcC-C
Confidence 11112468999999999999999999999999999998 76542 2345566665 69999 99999999865 3
Q ss_pred CcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCC-CcH
Q psy14461 312 GMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP-NNA 389 (535)
Q Consensus 312 ~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~-~~~ 389 (535)
+++ .|++.+..+|+++++++|.|++++|++||++++ +.. ++++++|+|.||+++||++|+|||+|||+ +.+ .++
T Consensus 419 ~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l--~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~-~~~~~~~ 494 (515)
T TIGR03140 419 DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL--KDA-VELNRRGEIVIDERGRTSVPGIFAAGDVT-TVPYKQI 494 (515)
T ss_pred CEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHH--hhh-cccCCCCeEEECCCCCCCCCCEEEccccc-CCccceE
Confidence 444 366654334555689999999999999999987 444 77888899999999999999999999999 543 567
Q ss_pred HHHHHHHHHHHHHHhC
Q psy14461 390 SMAAISARLIIERLYG 405 (535)
Q Consensus 390 ~~A~~~g~~aa~~i~g 405 (535)
..|+.+|..||.+|..
T Consensus 495 ~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 495 IIAMGEGAKAALSAFD 510 (515)
T ss_pred EEEEccHHHHHHHHHH
Confidence 8899999999999875
No 51
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=2e-32 Score=295.37 Aligned_cols=282 Identities=15% Similarity=0.086 Sum_probs=204.9
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF 167 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (535)
.++++|||+|++|+.+|+.....+.+|+||++. +++.....+ . +. ++++ ....++.++.++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~-~---~~----~~~~-----~~~~~~~~l~~~l--- 272 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM-G---IE----NFIS-----VPETEGPKLAAAL--- 272 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC-c---cc----ccCC-----CCCCCHHHHHHHH---
Confidence 368999999999999999999999999999864 222211000 0 11 0111 1123455544433
Q ss_pred HHHHHHHHHHHHHhcCcEEEEe-EEEEec----CCEEEEce-eEEEcceEEEeeCceecC-CCCC-C-----ceechhhH
Q psy14461 168 CIRAKNDSMRELKALGIDIVRT-AAAFTN----PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDL 234 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~gV~~~~g-~~~~~~----~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~ 234 (535)
...+++.+++++.+ ++..++ .+.+.+.+ .++.||+||+|||++|+. ++|| . .++.....
T Consensus 273 --------~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~ 344 (517)
T PRK15317 273 --------EEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHC 344 (517)
T ss_pred --------HHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeecc
Confidence 35667778988765 344432 23455543 579999999999999988 8888 1 12211111
Q ss_pred HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCC
Q psy14461 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTK-AGVSI-QCCVIEKVISSFD 311 (535)
Q Consensus 235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~ 311 (535)
......+++|+|||||++|+|+|..|+..+.+||++++ +.+.. + ..+.+.+.+ .||++ +++.++++..+ +
T Consensus 345 ~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gI~i~~~~~v~~i~~~-~ 417 (517)
T PRK15317 345 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA--D----QVLQDKLRSLPNVTIITNAQTTEVTGD-G 417 (517)
T ss_pred CchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc--c----HHHHHHHhcCCCcEEEECcEEEEEEcC-C
Confidence 11112468999999999999999999999999999998 66543 2 334555554 69999 99999999875 3
Q ss_pred CcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHH
Q psy14461 312 GMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNAS 390 (535)
Q Consensus 312 ~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~ 390 (535)
+.+ .+++.+..+|+++++++|.+++++|++||++++ +.. ++++++|+|.||+++||++|+|||+|||+....+++.
T Consensus 418 g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l--~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k~~~ 494 (517)
T PRK15317 418 DKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWL--KGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPYKQII 494 (517)
T ss_pred CcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHH--hhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCCCEEE
Confidence 444 366654345666689999999999999999987 444 7888889999999999999999999999933457788
Q ss_pred HHHHHHHHHHHHHhC
Q psy14461 391 MAAISARLIIERLYG 405 (535)
Q Consensus 391 ~A~~~g~~aa~~i~g 405 (535)
.|+.+|..||.++..
T Consensus 495 ~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 495 IAMGEGAKAALSAFD 509 (517)
T ss_pred EhhhhHHHHHHHHHH
Confidence 999999999999874
No 52
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=7.9e-33 Score=294.52 Aligned_cols=322 Identities=17% Similarity=0.151 Sum_probs=230.5
Q ss_pred CCCCChhHHHHh------------hhcCCcEEEEeCCCchhh--HHHH---------------HHHHHh----cC-----
Q psy14461 42 PSFETPPAYISR------------LSYENRILIFTHAVLREE--NARA---------------ERYLNA----RG----- 83 (535)
Q Consensus 42 p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~~--~~~~---------------k~~~~~----~~----- 83 (535)
|...+++.|+.. +.+.||+.....+.||+. |... ++.... .+
T Consensus 55 p~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~ 134 (457)
T PRK11749 55 PVSIDIPEFIRLIAEGNLKGAAETILETNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFK 134 (457)
T ss_pred CCcCCHHHHHHHHHCCCHHHHHHHHHHhCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCC
Confidence 777788877654 456688888889999976 7552 121111 11
Q ss_pred -CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-ccccccccccccchhhcccccccccccccCHHHHH
Q psy14461 84 -DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-KKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAAT 161 (535)
Q Consensus 84 -~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 161 (535)
......+|+|||+|++|+.+|..+...+.+|+|||+.+.++.. ..++|.+ .. ..++.
T Consensus 135 ~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~--------------------~~-~~~~~ 193 (457)
T PRK11749 135 RAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEF--------------------RL-PKDIV 193 (457)
T ss_pred CCccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCc--------------------cC-CHHHH
Confidence 1122368999999999999999888889999999998865321 1111111 00 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCce-ecC-CCCC---CceechhhHHh
Q psy14461 162 KLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERR-CLP-EPRN---SALISADDLFR 236 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~-p~~-~i~G---~~v~~~~~~~~ 236 (535)
.+ ....++..||+++.++.. .+.+++.+..+.||+||||||++ |+. ++|| .++++..+++.
T Consensus 194 ~~-----------~~~~l~~~gv~~~~~~~v---~~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~ 259 (457)
T PRK11749 194 DR-----------EVERLLKLGVEIRTNTEV---GRDITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLT 259 (457)
T ss_pred HH-----------HHHHHHHcCCEEEeCCEE---CCccCHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHH
Confidence 21 224567789999888753 23344433347899999999996 666 8888 45777666654
Q ss_pred cc---------CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-Cc-CCccCcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461 237 LG---------AWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RR-LLKHFDQEMVRILLSSLTKAGVSI-QCCVI 303 (535)
Q Consensus 237 ~~---------~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~-~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v 303 (535)
.. ..+++|+|||||++|+|+|..|.+.|. +||++++ +. .++.... ..+.++++||++ +++.+
T Consensus 260 ~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~GV~i~~~~~v 334 (457)
T PRK11749 260 RVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE-----EVEHAKEEGVEFEWLAAP 334 (457)
T ss_pred HHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HHHHHHHCCCEEEecCCc
Confidence 21 247899999999999999999999998 8999998 44 3444332 235567889999 99999
Q ss_pred EEEEEeCCCcEEEEEecC--------------CCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCC-CC
Q psy14461 304 EKVISSFDGMKGVRGFHP--------------ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE-KD 368 (535)
Q Consensus 304 ~~i~~~~~~~~~v~~~~~--------------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~ 368 (535)
.++..++++...|++... .+|+++++++|.||+|+|++|+..++ ....+++++++|+|.||+ ++
T Consensus 335 ~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~-~~~~gl~~~~~g~i~vd~~~~ 413 (457)
T PRK11749 335 VEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLIL-STTPGLELNRWGTIIADDETG 413 (457)
T ss_pred EEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhh-ccccCccCCCCCCEEeCCCCC
Confidence 999865222122333210 13445589999999999999997765 235578888899999998 88
Q ss_pred CcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461 369 QTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 369 ~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 405 (535)
+|+.|+|||+|||+ .++.++..|+.||+.||.+|..
T Consensus 414 ~Ts~~~VfA~GD~~-~~~~~~~~A~~~G~~aA~~I~~ 449 (457)
T PRK11749 414 RTSLPGVFAGGDIV-TGAATVVWAVGDGKDAAEAIHE 449 (457)
T ss_pred ccCCCCEEEeCCcC-CCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 7778899999999999999864
No 53
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=2.2e-32 Score=283.16 Aligned_cols=274 Identities=18% Similarity=0.165 Sum_probs=210.7
Q ss_pred EEEeeCCccHHHHHHHHHh---hCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461 90 YLDRIGDEGILLEEELKRQ---TNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR 166 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~---~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (535)
+|+|||+|.+|+.+|.+.. ....+|+|||++++..|.+. +|++ +.+ ..+..++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~---~~g--------------~~~~~~~------ 56 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGM---IAG--------------HYSLDEI------ 56 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHH---Hhe--------------eCCHHHh------
Confidence 4799999999999887653 45789999999998777643 4443 222 1122222
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeEEEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC--Ccee---chhhHHh-
Q psy14461 167 FCIRAKNDSMRELKALGIDIVRTAAAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN--SALI---SADDLFR- 236 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G--~~v~---~~~~~~~- 236 (535)
.....++++..||+++.+++..++ .++|.+.+ .++.||+||||||++|.. ++|| ++++ +.+++..
T Consensus 57 -----~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~ 131 (364)
T TIGR03169 57 -----RIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLAR 131 (364)
T ss_pred -----cccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHH
Confidence 222335667789999999988765 56777765 679999999999999998 8998 4433 3233322
Q ss_pred ---c------cCCCCcEEEECCChHHHHHHHHHHh----CC--CcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEE-cc
Q psy14461 237 ---L------GAWPGKTLVLGGSLMAVEIAATLNF----LG--VPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSI-QC 300 (535)
Q Consensus 237 ---~------~~~~k~vvViGgG~~g~e~A~~l~~----~g--~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i-~~ 300 (535)
+ ...+++++|||+|++|+|+|..|++ +| .+|+++..+.+++.+++++.+.+++.|++.||++ .+
T Consensus 132 ~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~ 211 (364)
T TIGR03169 132 WEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEG 211 (364)
T ss_pred HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 1 1235799999999999999999875 34 5899993377888889999999999999999999 99
Q ss_pred eEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCc-CCCCEEEeC
Q psy14461 301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQT-SVGNIFAVG 379 (535)
Q Consensus 301 ~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T-~~~~IyA~G 379 (535)
+.+++++. + .+.+. +|+ ++++|.+++|+|.+|+.. + ...+++++++|+|.||+++|| +.|+|||+|
T Consensus 212 ~~v~~i~~---~--~v~~~---~g~--~i~~D~vi~a~G~~p~~~-l--~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~G 278 (364)
T TIGR03169 212 APVTRGPD---G--ALILA---DGR--TLPADAILWATGARAPPW-L--AESGLPLDEDGFLRVDPTLQSLSHPHVFAAG 278 (364)
T ss_pred CeeEEEcC---C--eEEeC---CCC--EEecCEEEEccCCChhhH-H--HHcCCCcCCCCeEEECCccccCCCCCEEEee
Confidence 99999863 2 35553 676 899999999999999863 3 456777888899999999998 999999999
Q ss_pred CcCC----CCCCcHHHHHHHHHHHHHHHhC
Q psy14461 380 GIVH----GKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 380 D~~~----~~~~~~~~A~~~g~~aa~~i~g 405 (535)
||+. ..++....|++||+++|+||..
T Consensus 279 D~~~~~~~~~~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 279 DCAVITDAPRPKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred eeeecCCCCCCCchHHHHHhHHHHHHHHHH
Confidence 9984 1245677899999999999963
No 54
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=4.1e-32 Score=273.18 Aligned_cols=282 Identities=15% Similarity=0.102 Sum_probs=201.6
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC 168 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (535)
++++|||+|++|+.+|..+...+.+|+|||+++ .++... .. .....+|++. ......++..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~-~~-------~~~~~~~~~~----~~~~~~~~~~------ 61 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT-TT-------TEVENYPGFP----EGISGPELME------ 61 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee-ec-------ccccccCCCC----CCCChHHHHH------
Confidence 368999999999999998888899999999886 211100 00 0000011110 0011122222
Q ss_pred HHHHHHHHHHHHhcCcEEEEeEEEEecC--C--EEEEce-eEEEcceEEEeeCceecC-CCCC-C-----ceechhhHHh
Q psy14461 169 IRAKNDSMRELKALGIDIVRTAAAFTNP--H--TIKLSN-RSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDLFR 236 (535)
Q Consensus 169 ~~~~~~~~~~~~~~gV~~~~g~~~~~~~--~--~v~~~~-~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~~~ 236 (535)
.+...+++.+++++.+++..++. + .+...+ .++.||+||+|||++|.. ++|| . .+........
T Consensus 62 -----~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~ 136 (300)
T TIGR01292 62 -----KMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDG 136 (300)
T ss_pred -----HHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecCh
Confidence 23355677899998877655432 2 344443 689999999999999988 8888 2 1211111111
Q ss_pred ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcC-CeEE-cceEEEEEEEeCCCc
Q psy14461 237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKA-GVSI-QCCVIEKVISSFDGM 313 (535)
Q Consensus 237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~-gV~i-~~~~v~~i~~~~~~~ 313 (535)
....+++|+|||+|++|+|+|..|++.+.+|+++++ +.+.. . ..+.+.++++ ||++ +++.+++++.+ +..
T Consensus 137 ~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~--~----~~~~~~l~~~~gv~~~~~~~v~~i~~~-~~~ 209 (300)
T TIGR01292 137 PFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA--E----KILLDRLRKNPNIEFLWNSTVKEIVGD-NKV 209 (300)
T ss_pred hhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc--C----HHHHHHHHhCCCeEEEeccEEEEEEcc-CcE
Confidence 112468999999999999999999999999999999 65432 2 3345556666 9999 99999999864 222
Q ss_pred EEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCC-CCCcHHHH
Q psy14461 314 KGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-KPNNASMA 392 (535)
Q Consensus 314 ~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~-~~~~~~~A 392 (535)
..+++.+..+|+.+++++|.+++|+|++|+.+++ +.. ++++++|++.||++++|+.|+|||+|||+ + .++.+..|
T Consensus 210 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l--~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~-~~~~~~~~~A 285 (300)
T TIGR01292 210 EGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELL--KGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVR-DKGYRQAVTA 285 (300)
T ss_pred EEEEEEecCCCceEEEEccEEEEeeCCCCChHHH--HHh-heecCCCcEEECCCCccCCCCEEEeeccc-Ccchhhhhhh
Confidence 3455543234665689999999999999999876 444 67788899999999999999999999999 6 57888999
Q ss_pred HHHHHHHHHHHhC
Q psy14461 393 AISARLIIERLYG 405 (535)
Q Consensus 393 ~~~g~~aa~~i~g 405 (535)
+.||+.||.+|..
T Consensus 286 ~~~g~~aa~~i~~ 298 (300)
T TIGR01292 286 AGDGCIAALSAER 298 (300)
T ss_pred hhhHHHHHHHHHh
Confidence 9999999999863
No 55
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=1.9e-32 Score=307.60 Aligned_cols=323 Identities=16% Similarity=0.148 Sum_probs=233.2
Q ss_pred CCCCChhHHHHh------------hhcCCcEEEEeCCCchh--hHHHH----------------HHHHH----hcC----
Q psy14461 42 PSFETPPAYISR------------LSYENRILIFTHAVLRE--ENARA----------------ERYLN----ARG---- 83 (535)
Q Consensus 42 p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~--~~~~~----------------k~~~~----~~~---- 83 (535)
|...+++.|+.. +.+.|++..+..+.||+ .|..+ ++... ..+
T Consensus 344 p~~~~i~~~~~~~~~g~~~~a~~~~~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~ 423 (752)
T PRK12778 344 PVGIDIPRFIKNIERGNFLEAAKILKETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISV 423 (752)
T ss_pred cCCCCHHHHHHHHHCCCHHHHHHHHHhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence 777778777553 56778988888999994 46643 11111 111
Q ss_pred ---CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHH
Q psy14461 84 ---DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAA 160 (535)
Q Consensus 84 ---~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 160 (535)
....-.+|+|||+||||+++|..+...+.+|+|||+.+.+++ +..| +++.. ... .++
T Consensus 424 ~~~~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG----~l~~--gip~~-------------rlp-~~~ 483 (752)
T PRK12778 424 PEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGG----VLKY--GIPEF-------------RLP-KKI 483 (752)
T ss_pred CCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC----eeee--cCCCC-------------CCC-HHH
Confidence 011235899999999999999999889999999999765432 2211 12210 011 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCc-eecC-CCCC---CceechhhH
Q psy14461 161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVER-RCLP-EPRN---SALISADDL 234 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs-~p~~-~i~G---~~v~~~~~~ 234 (535)
..+ ..+.+++.||+++.++.. .+++++++ ....||+||||||+ .|+. ++|| ++++++.++
T Consensus 484 ~~~-----------~~~~l~~~gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~ 549 (752)
T PRK12778 484 VDV-----------EIENLKKLGVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEY 549 (752)
T ss_pred HHH-----------HHHHHHHCCCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHH
Confidence 211 124566789999887642 34555554 45679999999999 5887 8999 578888887
Q ss_pred Hhcc--------------CCCCcEEEECCChHHHHHHHHHHhCCCc-EEEEEc-Cc-CCccCcHHHHHHHHHhhhcCCeE
Q psy14461 235 FRLG--------------AWPGKTLVLGGSLMAVEIAATLNFLGVP-VTLVYS-RR-LLKHFDQEMVRILLSSLTKAGVS 297 (535)
Q Consensus 235 ~~~~--------------~~~k~vvViGgG~~g~e~A~~l~~~g~~-Vtlv~~-~~-~l~~~~~~~~~~~~~~l~~~gV~ 297 (535)
+... ..+++|+|||||++|+|+|..+.++|.+ ||++++ +. .++....++ +.++++||+
T Consensus 550 l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV~ 624 (752)
T PRK12778 550 LTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV-----KHAKEEGIE 624 (752)
T ss_pred HHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-----HHHHHcCCE
Confidence 6421 2358999999999999999999999997 999998 43 344433332 346678999
Q ss_pred E-cceEEEEEEEeCCCcE-EEEEec------C---------CCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCC
Q psy14461 298 I-QCCVIEKVISSFDGMK-GVRGFH------P---------ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS 360 (535)
Q Consensus 298 i-~~~~v~~i~~~~~~~~-~v~~~~------~---------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G 360 (535)
+ +++.+.++..++++.+ .|++.. . .+|+++++++|.||+|+|++|++.++. ...+++++++|
T Consensus 625 i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~-~~~gl~~~~~G 703 (752)
T PRK12778 625 FLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPS-SIPGLELNRKG 703 (752)
T ss_pred EEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccc-cccCceECCCC
Confidence 9 9999999976534443 233321 0 124456799999999999999987641 22478888899
Q ss_pred ceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461 361 YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 361 ~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 405 (535)
+|.||++++|+.|+|||+|||+ .++.++..|+.+|+.||.+|..
T Consensus 704 ~i~vd~~~~Ts~~gVfA~GD~~-~g~~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 704 TIVVDEEMQSSIPGIYAGGDIV-RGGATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred CEEeCCCCCCCCCCEEEeCCcc-CCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 7788899999999999999964
No 56
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=313.83 Aligned_cols=328 Identities=14% Similarity=0.089 Sum_probs=235.8
Q ss_pred CCccccccCCCCCCChhHHHH------------hhhcCCcEEEEeCCCchh--hHHHH---------------HHHHHh-
Q psy14461 32 SPTASSCDLLPSFETPPAYIS------------RLSYENRILIFTHAVLRE--ENARA---------------ERYLNA- 81 (535)
Q Consensus 32 ~~~~~~~~~~p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp~--~~~~~---------------k~~~~~- 81 (535)
.++..+| |.-.+++.|+. .+.+.|++.-+..+.||+ .|..+ ++.+.+
T Consensus 339 ~~C~~~C---P~~~dip~~~~~i~~g~~~~A~~~i~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~ 415 (1006)
T PRK12775 339 PTCIAGC---PVQIDIPVFIRHVVVRDFDGALEVIYEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDN 415 (1006)
T ss_pred ccccCCC---CCCCCHHHHHHHHHCCCHHHHHHHHHHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHH
Confidence 3444567 77777877755 356778999889999995 57764 333221
Q ss_pred ---cCCc-----ceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-ccccccccccccchhhcccccccccc
Q psy14461 82 ---RGDR-----FAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-KKRRLYYPVAMSDLELEQDSTSALNV 152 (535)
Q Consensus 82 ---~~~~-----~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-~~~l~~~~~~i~~~~~~~~~~~~~~~ 152 (535)
.+.+ ..-.+|+|||+||||+++|..+...+.+|+|||+.+.+++. ..++|.+.
T Consensus 416 ~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~r------------------ 477 (1006)
T PRK12775 416 ARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFR------------------ 477 (1006)
T ss_pred HHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccC------------------
Confidence 1110 11257999999999999999999999999999998866432 22333320
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEcee--EEEcceEEEeeCce-ecC-CCCC---
Q psy14461 153 TIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNR--SVTGFNFLLAVERR-CLP-EPRN--- 225 (535)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~--~~~~d~lViATGs~-p~~-~i~G--- 225 (535)
...++..+ ..+.++..||++..+++. ++++++.+. ...||+||||||+. |+. +|||
T Consensus 478 ---l~~e~~~~-----------~~~~l~~~Gv~~~~~~~v---g~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l 540 (1006)
T PRK12775 478 ---LPRDIIDR-----------EVQRLVDIGVKIETNKVI---GKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFA 540 (1006)
T ss_pred ---CCHHHHHH-----------HHHHHHHCCCEEEeCCcc---CCccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCC
Confidence 01122222 225577789999888642 334444331 35799999999995 777 9999
Q ss_pred CceechhhHHhcc---------------CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc--CcCCccCcHHHHHHH
Q psy14461 226 SALISADDLFRLG---------------AWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS--RRLLKHFDQEMVRIL 287 (535)
Q Consensus 226 ~~v~~~~~~~~~~---------------~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~--~~~l~~~~~~~~~~~ 287 (535)
.++++..+++... ..+++|+|||||++|+|+|..+.++|. +|+++++ ...++....++
T Consensus 541 ~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~---- 616 (1006)
T PRK12775 541 GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEI---- 616 (1006)
T ss_pred CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHH----
Confidence 6788888776421 246899999999999999999999997 5888887 33334332222
Q ss_pred HHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEec------CC--------CCCceEEEcCEEEEccCCCCCCCCCCccc
Q psy14461 288 LSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFH------PE--------SKEPFADVFKTVVNAMEKKFDFAALNLHH 351 (535)
Q Consensus 288 ~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~------~~--------~G~~~~~~~D~vi~a~G~~p~~~~l~l~~ 351 (535)
+.+++.||++ +++.+++|..+++++++ |++.. .. +|+++++++|.||+|+|+.||+.++. ..
T Consensus 617 -~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~-~~ 694 (1006)
T PRK12775 617 -RHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQ-ST 694 (1006)
T ss_pred -HHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhh-cc
Confidence 3466789999 99999999764345442 33321 01 24445799999999999999987652 23
Q ss_pred cCeeecCCCceEcCC-----CCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461 352 IGVDIKKKSYVVCNE-----KDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY 404 (535)
Q Consensus 352 ~gl~~~~~G~i~vd~-----~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~ 404 (535)
.+++++++|.|.+|+ +++||+|+|||+||++ .++.++..|+.+|+.||.+|.
T Consensus 695 ~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~-~G~~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 695 PGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIV-TGGATVILAMGAGRRAARSIA 751 (1006)
T ss_pred CCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcC-CCccHHHHHHHHHHHHHHHHH
Confidence 468888889999996 7899999999999999 788899999999999999985
No 57
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=1.1e-32 Score=294.04 Aligned_cols=326 Identities=17% Similarity=0.097 Sum_probs=227.6
Q ss_pred CCCCChhHHHHh------------hhcCCcEEEEeCCCchhhHHHH---------------HHHHHh----cCC--c---
Q psy14461 42 PSFETPPAYISR------------LSYENRILIFTHAVLREENARA---------------ERYLNA----RGD--R--- 85 (535)
Q Consensus 42 p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~~~~~~---------------k~~~~~----~~~--~--- 85 (535)
|...+.+.|+.. +.+.|++.....+.||+.|..+ ++...+ .+. .
T Consensus 59 P~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~ 138 (471)
T PRK12810 59 PVHNYIPEWNDLVYRGRWEEAAERLHQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPP 138 (471)
T ss_pred CCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCC
Confidence 777777777553 5667888888899999878764 222221 110 0
Q ss_pred --ceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-ccccccccccccchhhcccccccccccccCHHHHHH
Q psy14461 86 --FAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-KKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATK 162 (535)
Q Consensus 86 --~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (535)
..-.+|+|||+|++|+++|..+...+.+|+|||+.+.++.. ..++|.+ ... .++..
T Consensus 139 ~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~--------------------~~~-~~~~~ 197 (471)
T PRK12810 139 VKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDF--------------------KLE-KEVID 197 (471)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcc--------------------cCC-HHHHH
Confidence 11258999999999999999988889999999998866322 1222222 011 11211
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCce-ecC-CCCC---CceechhhHHh-
Q psy14461 163 LIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERR-CLP-EPRN---SALISADDLFR- 236 (535)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~-p~~-~i~G---~~v~~~~~~~~- 236 (535)
+ ..+.+.+.||+++.++.... .+........||+||||||++ |+. ++|| .++++..+++.
T Consensus 198 ~-----------~~~~~~~~gv~~~~~~~v~~---~~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~ 263 (471)
T PRK12810 198 R-----------RIELMEAEGIEFRTNVEVGK---DITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQ 263 (471)
T ss_pred H-----------HHHHHHhCCcEEEeCCEECC---cCCHHHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHH
Confidence 1 12456778999988875322 122222345899999999997 666 8998 56766554432
Q ss_pred -------------ccCCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-CcCCccC-cH----HH-HHHHHHhhhcCC
Q psy14461 237 -------------LGAWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RRLLKHF-DQ----EM-VRILLSSLTKAG 295 (535)
Q Consensus 237 -------------~~~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~~l~~~-~~----~~-~~~~~~~l~~~g 295 (535)
....+++|+|||||++|+|+|..+.++|. +|+++++ +.+.... +. .. .....+.++++|
T Consensus 264 ~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 343 (471)
T PRK12810 264 NTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEG 343 (471)
T ss_pred HHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcC
Confidence 12346899999999999999999999986 7887765 3322111 00 00 011245567789
Q ss_pred eEE-cceEEEEEEEeCCCcEE-EEEecC---------CCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEc
Q psy14461 296 VSI-QCCVIEKVISSFDGMKG-VRGFHP---------ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVC 364 (535)
Q Consensus 296 V~i-~~~~v~~i~~~~~~~~~-v~~~~~---------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~v 364 (535)
|++ ++..+++|..+ +++++ |++... ..|+++++++|.||+|+|++|+...+ ++..+++++++|++.+
T Consensus 344 V~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l-~~~~gl~~~~~g~i~v 421 (471)
T PRK12810 344 VEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGL-LAQFGVELDERGRVAA 421 (471)
T ss_pred CeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhh-ccccCcccCCCCCEEe
Confidence 999 99999999754 45442 443210 13555689999999999999996433 3777888898999999
Q ss_pred C-CCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461 365 N-EKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 365 d-~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 405 (535)
| ++++|+.|+|||+|||+ +++.++..|+.||+.||.+|..
T Consensus 422 d~~~~~Ts~~gVfa~GD~~-~g~~~~~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 422 PDNAYQTSNPKVFAAGDMR-RGQSLVVWAIAEGRQAARAIDA 462 (471)
T ss_pred CCCcccCCCCCEEEccccC-CCchhHHHHHHHHHHHHHHHHH
Confidence 8 79999999999999999 7777889999999999999863
No 58
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=4.3e-32 Score=299.14 Aligned_cols=327 Identities=19% Similarity=0.161 Sum_probs=235.4
Q ss_pred CCccccccCCCCCCChhHHHHh------------hhcCCcEEEEeCCCchhhHHHH---------------HHHHHh---
Q psy14461 32 SPTASSCDLLPSFETPPAYISR------------LSYENRILIFTHAVLREENARA---------------ERYLNA--- 81 (535)
Q Consensus 32 ~~~~~~~~~~p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~~~~~~---------------k~~~~~--- 81 (535)
.|+..+| |...+++.|+.. +.+.|++.....+.||++|... ++....
T Consensus 102 ~pC~~~C---P~~~~~~~~~~~~~~g~~~~a~~~~~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~ 178 (652)
T PRK12814 102 GPCELAC---PAGCNIPGFIAAIARGDDREAIRIIKETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDM 178 (652)
T ss_pred CccccCC---CCCCcHHHHHHHHHCCCHHHHHHHHHhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHH
Confidence 4566677 788888888663 5677899888899999988763 222221
Q ss_pred -cCC-------cceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhccccccccccc
Q psy14461 82 -RGD-------RFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVT 153 (535)
Q Consensus 82 -~~~-------~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 153 (535)
.+. .-.-.+|+|||+|++|+.+|..+...+.+|+|||+.+.+++. ..+ +++..
T Consensus 179 ~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~----l~~--gip~~------------- 239 (652)
T PRK12814 179 ESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGM----MRY--GIPRF------------- 239 (652)
T ss_pred hcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCce----eee--cCCCC-------------
Confidence 000 012358999999999999999998889999999998876332 111 11110
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceec-C-CCCC---Cce
Q psy14461 154 IRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCL-P-EPRN---SAL 228 (535)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~-~-~i~G---~~v 228 (535)
. ....+.++. .+.+...|+++..++... ..+++.+....||+||||||+++. . ++|| +++
T Consensus 240 ~-~~~~~~~~~-----------~~~l~~~Gv~i~~~~~v~---~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv 304 (652)
T PRK12814 240 R-LPESVIDAD-----------IAPLRAMGAEFRFNTVFG---RDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGV 304 (652)
T ss_pred C-CCHHHHHHH-----------HHHHHHcCCEEEeCCccc---CccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCc
Confidence 0 011122211 244567799988876421 123333323459999999999864 4 8888 457
Q ss_pred echhhHHhc------cCCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-Cc-CCccCcHHHHHHHHHhhhcCCeEE-
Q psy14461 229 ISADDLFRL------GAWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RR-LLKHFDQEMVRILLSSLTKAGVSI- 298 (535)
Q Consensus 229 ~~~~~~~~~------~~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~-~l~~~~~~~~~~~~~~l~~~gV~i- 298 (535)
++..+++.. ...+++|+|||||++|+|+|..+.++|. +||++++ +. .++..+.++.+. .++||++
T Consensus 305 ~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a-----~~eGV~i~ 379 (652)
T PRK12814 305 ISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEA-----LAEGVSLR 379 (652)
T ss_pred EeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHH-----HHcCCcEE
Confidence 777666542 2357899999999999999999999996 6999998 53 566555544332 3569999
Q ss_pred cceEEEEEEEeCCCcEEEE---Eec---C---------CCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceE
Q psy14461 299 QCCVIEKVISSFDGMKGVR---GFH---P---------ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVV 363 (535)
Q Consensus 299 ~~~~v~~i~~~~~~~~~v~---~~~---~---------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~ 363 (535)
++..+.+|..+ ++.+.++ ++. . .+|+++++++|.||+|+|+.|+++++ +..+++++++|+|.
T Consensus 380 ~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll--~~~gl~~~~~G~I~ 456 (652)
T PRK12814 380 ELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIA--EAAGIGTSRNGTVK 456 (652)
T ss_pred eccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccc--cccCccccCCCcEe
Confidence 99999998765 3443332 211 0 13455679999999999999999876 66788888889999
Q ss_pred cCC-CCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461 364 CNE-KDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY 404 (535)
Q Consensus 364 vd~-~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~ 404 (535)
||+ +++|+.|+|||+||++ .++.++..|+.||+.||.+|.
T Consensus 457 vd~~~~~Ts~pgVfA~GDv~-~g~~~v~~Ai~~G~~AA~~I~ 497 (652)
T PRK12814 457 VDPETLQTSVAGVFAGGDCV-TGADIAINAVEQGKRAAHAID 497 (652)
T ss_pred eCCCCCcCCCCCEEEcCCcC-CCchHHHHHHHHHHHHHHHHH
Confidence 996 6899999999999999 778889999999999999985
No 59
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=2.5e-32 Score=286.39 Aligned_cols=364 Identities=16% Similarity=0.146 Sum_probs=268.6
Q ss_pred EEEEeeCCccHHHHHHHHH---hhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKR---QTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK 165 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~---~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (535)
.+++|||.|.+|..+.... ......||+|-.+++..|.+..+..+ ++++ -+.++
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~v---l~~~--------------~~~ed------ 60 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSV---LAGE--------------KTAED------ 60 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccc---cCCC--------------ccHHH------
Confidence 5689999999997765433 33568899999999999998777655 4432 12222
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEce-eEEEcceEEEeeCceecC-CCCC---Ccee---chhhH
Q psy14461 166 RFCIRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN---SALI---SADDL 234 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G---~~v~---~~~~~ 234 (535)
+.....+++++.||+++.++ +.+++ .+.|+.+. ..+.||+|||||||.|+. |+|| +.++ +.+|.
T Consensus 61 -----i~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~ 135 (793)
T COG1251 61 -----ISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDV 135 (793)
T ss_pred -----HhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHH
Confidence 22223478889999999886 44444 55666654 889999999999999999 9999 3444 45555
Q ss_pred Hhc---cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-ccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461 235 FRL---GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-KHFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS 308 (535)
Q Consensus 235 ~~~---~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~ 308 (535)
..+ .+..++.+|||||..|+|+|..|.+.|.+|++++. +.++ .++|+.....+++.++++|+++ ++....++.+
T Consensus 136 ~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g 215 (793)
T COG1251 136 EAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG 215 (793)
T ss_pred HHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc
Confidence 433 23456789999999999999999999999999999 8887 5899999999999999999999 9988888876
Q ss_pred eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCC---CC
Q psy14461 309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH---GK 385 (535)
Q Consensus 309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~---~~ 385 (535)
. +....+.+. ||+ .+++|.|++|+|++||+++. ..+|+++++ | |.||++||||.|+|||+|+|++ ..
T Consensus 216 ~-~~~~~vr~~---DG~--~i~ad~VV~a~GIrPn~ela--~~aGlavnr-G-Ivvnd~mqTsdpdIYAvGEcae~~g~~ 285 (793)
T COG1251 216 E-DKVEGVRFA---DGT--EIPADLVVMAVGIRPNDELA--KEAGLAVNR-G-IVVNDYMQTSDPDIYAVGECAEHRGKV 285 (793)
T ss_pred C-cceeeEeec---CCC--cccceeEEEecccccccHhH--HhcCcCcCC-C-eeecccccccCCCeeehhhHHHhcCcc
Confidence 3 344467774 898 89999999999999999986 788999885 4 9999999999999999999996 23
Q ss_pred CCcHHHHHHHHHHHHHHHhCCCCC-CCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCC
Q psy14461 386 PNNASMAAISARLIIERLYGMQDQ-LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLP 464 (535)
Q Consensus 386 ~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (535)
+.++..+..|++++|+|+.+.... +......+...-++-++.+.|--. +.. +-+.+. |.+ +
T Consensus 286 yGLVaP~yeq~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~-e~~------~~~~iv--~~D------~--- 347 (793)
T COG1251 286 YGLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQ-ETE------GAESIV--FRD------E--- 347 (793)
T ss_pred ceehhHHHHHHHHHHHHhccCcccccccccchhhhcccccceeeccchh-hcC------CCceEE--Eec------c---
Confidence 678889999999999999987543 222211223344566777777443 111 111111 111 1
Q ss_pred cchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHc
Q psy14461 465 ENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELD 533 (535)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~ 533 (535)
....|-|++.. +++|+|+.++|+-+. =+.+-.+|..+..++++.
T Consensus 348 ---------------------~~~iYKrlvL~--dd~IvgavL~GDt~d--~~~l~~li~~~~~~se~r 391 (793)
T COG1251 348 ---------------------QRGIYKKLVLK--DDKIVGAVLYGDTSD--GGWLLDLILKGADISEIR 391 (793)
T ss_pred ---------------------cccceeEEEEe--CCeEEEEEEEeeccc--chHHHHHHhcCCCccccc
Confidence 12457788875 579999999998421 123445566666665543
No 60
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.3e-31 Score=272.69 Aligned_cols=288 Identities=13% Similarity=0.072 Sum_probs=201.8
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF 167 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (535)
..+|+|||+||+|+.+|+.....+.++++||+.+ .+......+. +. ++|+. ....+++.+.++..
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~gg~~~~~~~----~~----~~~~~----~~~~~~~~~~~~~~-- 70 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTE----VE----NWPGD----PNDLTGPLLMERMH-- 70 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CCCceecCce----EC----CCCCC----CCCCCHHHHHHHHH--
Confidence 3578999999999999999888888999999653 2211100000 00 01110 12345554444433
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeEEEEe--cCCEEEEc--eeEEEcceEEEeeCceecC-CCCC-C-----ceechhhHHh
Q psy14461 168 CIRAKNDSMRELKALGIDIVRTAAAFT--NPHTIKLS--NRSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDLFR 236 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~--~~~~v~~~--~~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~~~ 236 (535)
......++++..+++..+ ....+++. ...+.||+||||||++|+. ++|| + .++.......
T Consensus 71 ---------~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~ 141 (321)
T PRK10262 71 ---------EHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDG 141 (321)
T ss_pred ---------HHHHHCCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCH
Confidence 344445666666554332 23344443 3578999999999999988 8998 2 1222211111
Q ss_pred ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE
Q psy14461 237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK 314 (535)
Q Consensus 237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~ 314 (535)
....+++++|||+|++|+|+|..|++.+.+||++++ +.+. .++.+.+.+++.|++.||++ +++.++++..++.+..
T Consensus 142 ~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~ 219 (321)
T PRK10262 142 FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVT 219 (321)
T ss_pred HHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEE
Confidence 224578999999999999999999999999999999 6552 35677888899999999999 9999999986521222
Q ss_pred EEEEecCC-CCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCC-----CCCcCCCCEEEeCCcCCCCCCc
Q psy14461 315 GVRGFHPE-SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE-----KDQTSVGNIFAVGGIVHGKPNN 388 (535)
Q Consensus 315 ~v~~~~~~-~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-----~~~T~~~~IyA~GD~~~~~~~~ 388 (535)
.|++.+.. +++.+++++|.|++++|++||+.++ .. ++.++ +|+|.||+ +++|+.|+|||+|||+...+.+
T Consensus 220 ~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~--~~-~l~~~-~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~ 295 (321)
T PRK10262 220 GVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--EG-QLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQ 295 (321)
T ss_pred EEEEEEcCCCCeEEEEECCEEEEEeCCccChhHh--hc-ccccc-CCEEEECCCCcccccccCCCCEEECeeccCCCcce
Confidence 45554311 2334579999999999999999875 22 45554 68999997 7899999999999999323456
Q ss_pred HHHHHHHHHHHHHHHhC
Q psy14461 389 ASMAAISARLIIERLYG 405 (535)
Q Consensus 389 ~~~A~~~g~~aa~~i~g 405 (535)
...|+.+|+.||..|..
T Consensus 296 ~~~A~~~g~~Aa~~~~~ 312 (321)
T PRK10262 296 AITSAGTGCMAALDAER 312 (321)
T ss_pred EEEEehhHHHHHHHHHH
Confidence 67799999999999864
No 61
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=1.1e-31 Score=297.11 Aligned_cols=323 Identities=18% Similarity=0.132 Sum_probs=226.6
Q ss_pred CCCCChhHHHH------------hhhcCCcEEEEeCCCchh--hHHHH---------------HHHHH----hcC-----
Q psy14461 42 PSFETPPAYIS------------RLSYENRILIFTHAVLRE--ENARA---------------ERYLN----ARG----- 83 (535)
Q Consensus 42 p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp~--~~~~~---------------k~~~~----~~~----- 83 (535)
|.-++++.|+. .+.+.|++..+..+.||+ .|..+ ++... ..+
T Consensus 241 P~~~~i~~~~~~~~~g~~~~A~~~~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~ 320 (654)
T PRK12769 241 PLHNHIPQWIELVKAGNIDAAVELSHQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDL 320 (654)
T ss_pred CCCCcHHHHHHHHHCCCHHHHHHHHHHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCC
Confidence 66666666644 467789999999999993 57764 22221 111
Q ss_pred --CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHH
Q psy14461 84 --DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAAT 161 (535)
Q Consensus 84 --~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 161 (535)
....-.+|+|||+||+|+++|..+...+.+|+|||+.+.+++ ++.+ +++.. .++. ++.
T Consensus 321 ~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG----~l~~--gip~~-------------~l~~-~~~ 380 (654)
T PRK12769 321 SQVTKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG----LLTF--GIPAF-------------KLDK-SLL 380 (654)
T ss_pred cccccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc----eeee--cCCCc-------------cCCH-HHH
Confidence 011235899999999999999999889999999999886633 2222 12211 1111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceec-C-CCCC---CceechhhHH-
Q psy14461 162 KLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCL-P-EPRN---SALISADDLF- 235 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~-~-~i~G---~~v~~~~~~~- 235 (535)
.+ ..+.++..||++..++.. ...+.+......||+||+|||+.+. . ++|| .++++..+++
T Consensus 381 ~~-----------~~~~~~~~Gv~~~~~~~v---~~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~ 446 (654)
T PRK12769 381 AR-----------RREIFSAMGIEFELNCEV---GKDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLI 446 (654)
T ss_pred HH-----------HHHHHHHCCeEEECCCEe---CCcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHH
Confidence 21 125567789998876532 1223333323579999999999654 4 7887 4566543332
Q ss_pred -------hc---------cCCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-Cc-CCccCcHHHHHHHHHhhhcCCe
Q psy14461 236 -------RL---------GAWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RR-LLKHFDQEMVRILLSSLTKAGV 296 (535)
Q Consensus 236 -------~~---------~~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~-~l~~~~~~~~~~~~~~l~~~gV 296 (535)
.+ ...+++|+|||||++|+|+|..+.++|. +||++++ +. .++..+.++ +.++++||
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~-----~~~~~~Gv 521 (654)
T PRK12769 447 ANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEV-----KNAREEGA 521 (654)
T ss_pred HHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHH-----HHHHHcCC
Confidence 11 1235799999999999999999999996 7999998 54 355544432 44677899
Q ss_pred EE-cceEEEEEEEeCCCcE-EEEEecC------C---------CCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCC
Q psy14461 297 SI-QCCVIEKVISSFDGMK-GVRGFHP------E---------SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKK 359 (535)
Q Consensus 297 ~i-~~~~v~~i~~~~~~~~-~v~~~~~------~---------~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~ 359 (535)
++ ++..++++..++++++ .|++... . .|+++++++|.||+|+|+.|++..+ ++..+++++++
T Consensus 522 ~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~-~~~~gl~~~~~ 600 (654)
T PRK12769 522 NFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPW-LESHGVTVDKW 600 (654)
T ss_pred eEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccc-ccccCCcCCCC
Confidence 99 9999999975434444 2433210 1 2455689999999999999996433 36778999999
Q ss_pred CceEcCC----CCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461 360 SYVVCNE----KDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 360 G~i~vd~----~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 405 (535)
|+|.+|+ +++|+.|+|||+||++ .++.++..|+.+|+.||.+|..
T Consensus 601 G~i~vd~~~~~~~~Ts~~gVfAaGD~~-~g~~~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 601 GRIIADVESQYRYQTSNPKIFAGGDAV-RGADLVVTAMAEGRHAAQGIID 649 (654)
T ss_pred CCEEeCCCcccCcccCCCCEEEcCCcC-CCCcHHHHHHHHHHHHHHHHHH
Confidence 9999986 4899999999999999 7888999999999999999964
No 62
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-31 Score=264.05 Aligned_cols=278 Identities=18% Similarity=0.149 Sum_probs=207.7
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCe-EEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRR-DELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR 166 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~-V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (535)
.++++|||+||+|++||++..+.+.+ ++|+|+.. .+. .+.. .. .+.++|++. .......+++.+.
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg----~~~~---~~-~venypg~~----~~~~g~~L~~~~~- 68 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGG----QLTK---TT-DVENYPGFP----GGILGPELMEQMK- 68 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCC----cccc---ce-eecCCCCCc----cCCchHHHHHHHH-
Confidence 58999999999999999999999988 66666653 221 1111 11 233344442 2244555655554
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeEEEEecC----CEEEEceeEEEcceEEEeeCceecC-CCCC---------Cceechh
Q psy14461 167 FCIRAKNDSMRELKALGIDIVRTAAAFTNP----HTIKLSNRSVTGFNFLLAVERRCLP-EPRN---------SALISAD 232 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~----~~v~~~~~~~~~d~lViATGs~p~~-~i~G---------~~v~~~~ 232 (535)
++....++++....+..++. ..|.+++.++++++||||||+.++. .+|| .++.+++
T Consensus 69 ----------~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cd 138 (305)
T COG0492 69 ----------EQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCD 138 (305)
T ss_pred ----------HHHhhcCeEEEEEEEEEEeecCceEEEEECCCeEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecC
Confidence 55667899988877665432 3555555669999999999999988 7776 1233444
Q ss_pred hHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcC-CeEE-cceEEEEEEEe
Q psy14461 233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKA-GVSI-QCCVIEKVISS 309 (535)
Q Consensus 233 ~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~-gV~i-~~~~v~~i~~~ 309 (535)
. ....|+|+|||||++|+|.|.+|.+.+.+||+++| +.+.+ .+.+ .+.++++ +|++ +++.++++.++
T Consensus 139 g----~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra--~~~~----~~~l~~~~~i~~~~~~~i~ei~G~ 208 (305)
T COG0492 139 G----FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA--EEIL----VERLKKNVKIEVLTNTVVKEILGD 208 (305)
T ss_pred c----cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc--CHHH----HHHHHhcCCeEEEeCCceeEEecC
Confidence 4 12357999999999999999999999999999999 77655 3333 3444443 8999 99999999875
Q ss_pred CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcH
Q psy14461 310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA 389 (535)
Q Consensus 310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~ 389 (535)
+ ...|++++.. |++..+++|.+++++|..|+++++ ...++ ++++|+|.+|+.++||+|+|||+||++.....++
T Consensus 209 -~-v~~v~l~~~~-~~~~~~~~~gvf~~iG~~p~~~~~--~~~~~-~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~rqi 282 (305)
T COG0492 209 -D-VEGVVLKNVK-GEEKELPVDGVFIAIGHLPNTELL--KGLGV-LDENGYIVVDEEMETSVPGIFAAGDVADKNGRQI 282 (305)
T ss_pred -c-cceEEEEecC-CceEEEEeceEEEecCCCCchHHH--hhccc-cCCCCcEEcCCCcccCCCCEEEeEeeccCcccEE
Confidence 2 2356776422 777799999999999999999887 55555 7889999999999999999999999994334478
Q ss_pred HHHHHHHHHHHHHHhC
Q psy14461 390 SMAAISARLIIERLYG 405 (535)
Q Consensus 390 ~~A~~~g~~aa~~i~g 405 (535)
..|..+|.+||.++..
T Consensus 283 ~ta~~~G~~Aa~~a~~ 298 (305)
T COG0492 283 ATAAGDGAIAALSAER 298 (305)
T ss_pred eehhhhHHHHHHHHHH
Confidence 8999999999998753
No 63
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=100.00 E-value=2.2e-31 Score=283.22 Aligned_cols=327 Identities=17% Similarity=0.110 Sum_probs=230.5
Q ss_pred ccccccCCCCCCChhHHHH------------hhhcCCcEEEEeCCCch--hhHHHH---------------HHHHHh---
Q psy14461 34 TASSCDLLPSFETPPAYIS------------RLSYENRILIFTHAVLR--EENARA---------------ERYLNA--- 81 (535)
Q Consensus 34 ~~~~~~~~p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp--~~~~~~---------------k~~~~~--- 81 (535)
+..+| |.-.+++.|+. .+.+.|++.....+.|| ++|..+ ++...+
T Consensus 50 C~~~C---P~~~~~~~~~~~~~~g~~~~a~~~~~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~ 126 (467)
T TIGR01318 50 CEWKC---PVHNAIPQWLQLVQEGRIDEAAELSHQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTAL 126 (467)
T ss_pred ccccC---CCCCcHHHHHHHHHCCCHHHHHHHHHHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHH
Confidence 33456 77777777755 35667888888899998 478764 222211
Q ss_pred -cC--C-----cceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-ccccccccccccchhhcccccccccc
Q psy14461 82 -RG--D-----RFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-KKRRLYYPVAMSDLELEQDSTSALNV 152 (535)
Q Consensus 82 -~~--~-----~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-~~~l~~~~~~i~~~~~~~~~~~~~~~ 152 (535)
.+ . +..-.+|+|||+|++|+.+|..+...+.+|+|+|+.+.+++. +.++|.+
T Consensus 127 ~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~------------------- 187 (467)
T TIGR01318 127 AMGWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSF------------------- 187 (467)
T ss_pred HhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccc-------------------
Confidence 00 0 112357999999999999999888889999999999865322 1122221
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC--CCCC---Cc
Q psy14461 153 TIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP--EPRN---SA 227 (535)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~--~i~G---~~ 227 (535)
..+ .++..+ ..+.++..||+++.++.. ...+.+.+....||+||+|||+.+.. +||| ++
T Consensus 188 -~~~-~~~~~~-----------~~~~~~~~Gv~~~~~~~v---~~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~~g 251 (467)
T TIGR01318 188 -KLD-KAVLSR-----------RREIFTAMGIEFHLNCEV---GRDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPG 251 (467)
T ss_pred -cCC-HHHHHH-----------HHHHHHHCCCEEECCCEe---CCccCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCCCC
Confidence 111 112221 125677789998877532 12233333335799999999998754 8888 56
Q ss_pred eechhhHHh--------cc---------CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-Cc-CCccCcHHHHHHH
Q psy14461 228 LISADDLFR--------LG---------AWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RR-LLKHFDQEMVRIL 287 (535)
Q Consensus 228 v~~~~~~~~--------~~---------~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~-~l~~~~~~~~~~~ 287 (535)
+++..+++. +. ...++++|||+|++|+++|..+.++|. +||++++ +. .++..+.++
T Consensus 252 V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~---- 327 (467)
T TIGR01318 252 VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREV---- 327 (467)
T ss_pred cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHH----
Confidence 776544331 11 235899999999999999999999995 7999998 54 455554443
Q ss_pred HHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecC---------------CCCCceEEEcCEEEEccCCCCCCCCCCcc
Q psy14461 288 LSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHP---------------ESKEPFADVFKTVVNAMEKKFDFAALNLH 350 (535)
Q Consensus 288 ~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~---------------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~ 350 (535)
+.++++||++ +++.++++..++++++ .|++..+ .+|+++++++|.||+|+|++|+...+ ++
T Consensus 328 -~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~-~~ 405 (467)
T TIGR01318 328 -ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPW-LA 405 (467)
T ss_pred -HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccc-cc
Confidence 3456789999 9999999976433443 2333210 12445689999999999999986433 36
Q ss_pred ccCeeecCCCceEcC----CCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461 351 HIGVDIKKKSYVVCN----EKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 351 ~~gl~~~~~G~i~vd----~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 405 (535)
..+++++++|+|.+| ++++|+.|+|||+||++ +++.++..|+.+|+.||.+|..
T Consensus 406 ~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~-~~~~~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 406 GHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAV-RGADLVVTAVAEGRQAAQGILD 463 (467)
T ss_pred ccCccCCCCCCEEeCCccccCccCCCCCEEEECCcC-CCccHHHHHHHHHHHHHHHHHH
Confidence 678888889999999 68899999999999999 7788889999999999999863
No 64
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=6.2e-31 Score=285.49 Aligned_cols=282 Identities=11% Similarity=0.035 Sum_probs=197.2
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF 167 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (535)
.++|+|||+||||+.+|+.+...+.+|+|||++. +++.. ..... +. ++++. .......+.++.
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~-~~~~~---i~----~~pg~-----~~~~~~~l~~~l--- 66 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQI-TITSE---VV----NYPGI-----LNTTGPELMQEM--- 66 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceE-Eeccc---cc----cCCCC-----cCCCHHHHHHHH---
Confidence 3789999999999999999888999999999975 32221 00000 10 01111 112233333322
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeEEEEecC--C--EEEEceeEEEcceEEEeeCceecC-CCCC-C-----ceechhhHHh
Q psy14461 168 CIRAKNDSMRELKALGIDIVRTAAAFTNP--H--TIKLSNRSVTGFNFLLAVERRCLP-EPRN-S-----ALISADDLFR 236 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~--~--~v~~~~~~~~~d~lViATGs~p~~-~i~G-~-----~v~~~~~~~~ 236 (535)
...++..|++++.+++..++. + .+...+..+.||+||||||++|+. ++|| + .++.......
T Consensus 67 --------~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~ 138 (555)
T TIGR03143 67 --------RQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDG 138 (555)
T ss_pred --------HHHHHHcCCEEeccEEEEEEecCCEEEEEecCCEEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecCh
Confidence 245566789988777655432 2 344444568999999999999998 8998 2 1221111111
Q ss_pred ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE
Q psy14461 237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK 314 (535)
Q Consensus 237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~ 314 (535)
....+++|+|||||++|+|+|..|+++|.+||++++ +.+.. +.... .+.++.+||++ +++.|+++.++ +.+
T Consensus 139 ~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~--~~~~~---~~~~~~~gV~i~~~~~V~~i~~~--~~v 211 (555)
T TIGR03143 139 EFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC--AKLIA---EKVKNHPKIEVKFNTELKEATGD--DGL 211 (555)
T ss_pred hhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc--CHHHH---HHHHhCCCcEEEeCCEEEEEEcC--CcE
Confidence 123478999999999999999999999999999999 66532 23322 23344579999 99999999853 333
Q ss_pred -EEEEecCCCCCceEE--EcCE----EEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCC
Q psy14461 315 -GVRGFHPESKEPFAD--VFKT----VVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPN 387 (535)
Q Consensus 315 -~v~~~~~~~G~~~~~--~~D~----vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~ 387 (535)
.+.+.+..+|+..++ ++|. |++++|++||+.++ +. +++++++|+|.||++++|+.|+|||+|||+...+.
T Consensus 212 ~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~--~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~ 288 (555)
T TIGR03143 212 RYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELF--KG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKELR 288 (555)
T ss_pred EEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHH--hh-hcccCCCCeEEeCCccccCCCCEEEceeccCCCcc
Confidence 234433235764444 3676 99999999999876 33 57888899999999999999999999999722445
Q ss_pred cHHHHHHHHHHHHHHHh
Q psy14461 388 NASMAAISARLIIERLY 404 (535)
Q Consensus 388 ~~~~A~~~g~~aa~~i~ 404 (535)
.+..|+.||+.||.+|.
T Consensus 289 ~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 289 QVVTAVADGAIAATSAE 305 (555)
T ss_pred hheeHHhhHHHHHHHHH
Confidence 67789999999999995
No 65
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=2.2e-30 Score=285.51 Aligned_cols=323 Identities=17% Similarity=0.148 Sum_probs=227.5
Q ss_pred CCCCChhHHHH------------hhhcCCcEEEEeCCCchh--hHHHH---------------HHHHH----hcC-----
Q psy14461 42 PSFETPPAYIS------------RLSYENRILIFTHAVLRE--ENARA---------------ERYLN----ARG----- 83 (535)
Q Consensus 42 p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp~--~~~~~---------------k~~~~----~~~----- 83 (535)
|.-++++.|+. .+.+.|++..+..+.||+ .|..+ +++.. ..+
T Consensus 224 P~~~~i~~~~~~~~~g~~~~a~~~~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~ 303 (639)
T PRK12809 224 PLHNAIPDYIRLVQEGKIIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDV 303 (639)
T ss_pred CCCCcHHHHHHHHHCCCHHHHHHHHHHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCC
Confidence 66666766644 467779999999999983 57764 22221 111
Q ss_pred --CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHH
Q psy14461 84 --DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAAT 161 (535)
Q Consensus 84 --~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 161 (535)
....-.+|+|||+|++|+.+|..+...+.+|+|||+.+.+++ ++.| +++.. .++.. +.
T Consensus 304 ~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG----~l~~--gip~~-------------~l~~~-~~ 363 (639)
T PRK12809 304 SKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG----MLTF--GIPPF-------------KLDKT-VL 363 (639)
T ss_pred CcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCC----eeec--cCCcc-------------cCCHH-HH
Confidence 011236789999999999999988888999999999987632 2211 12211 12221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC--CCCC---CceechhhHHh
Q psy14461 162 KLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP--EPRN---SALISADDLFR 236 (535)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~--~i~G---~~v~~~~~~~~ 236 (535)
.+ ..+.++..||+++.++.. ...+.+.+....||+||+|||+.+.. ++|| .+++++-+++.
T Consensus 364 ~~-----------~~~~~~~~Gv~~~~~~~v---~~~~~~~~l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~ 429 (639)
T PRK12809 364 SQ-----------RREIFTAMGIDFHLNCEI---GRDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLT 429 (639)
T ss_pred HH-----------HHHHHHHCCeEEEcCCcc---CCcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHH
Confidence 11 125567789999887632 22334433446799999999997654 7888 45666533331
Q ss_pred --------cc---------CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-CcC-CccCcHHHHHHHHHhhhcCCe
Q psy14461 237 --------LG---------AWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RRL-LKHFDQEMVRILLSSLTKAGV 296 (535)
Q Consensus 237 --------~~---------~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~~-l~~~~~~~~~~~~~~l~~~gV 296 (535)
+. ..+++|+|||+|++|+++|..+.++|. +||++++ +.. ++..+.++. .++++||
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~-----~a~~eGv 504 (639)
T PRK12809 430 AHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVV-----NAREEGV 504 (639)
T ss_pred HHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHH-----HHHHcCC
Confidence 11 135899999999999999999999995 8999998 543 555544432 2467799
Q ss_pred EE-cceEEEEEEEeCCCcEE-EEEecC------C---------CCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCC
Q psy14461 297 SI-QCCVIEKVISSFDGMKG-VRGFHP------E---------SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKK 359 (535)
Q Consensus 297 ~i-~~~~v~~i~~~~~~~~~-v~~~~~------~---------~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~ 359 (535)
++ +++.+++|..+++++++ +++... . .|+++++++|.||+|+|+.|+...+ ++..+++++++
T Consensus 505 ~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~-~~~~gl~~~~~ 583 (639)
T PRK12809 505 EFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPW-LQGSGIKLDKW 583 (639)
T ss_pred eEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccc-ccccCcccCCC
Confidence 99 99999999765345443 322110 0 2456689999999999999975433 36678999989
Q ss_pred CceEcCC----CCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461 360 SYVVCNE----KDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 360 G~i~vd~----~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 405 (535)
|+|.+|+ +++|+.|+|||+||++ .++.++..|+.+|+.||.+|..
T Consensus 584 G~i~vd~~~~~~~~Ts~~gVfA~GD~~-~g~~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 584 GLIQTGDVGYLPTQTHLKKVFAGGDAV-HGADLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred CCEEeCCCcccCcccCCCCEEEcCCCC-CCchHHHHHHHHHHHHHHHHHH
Confidence 9999985 4899999999999999 7788899999999999999974
No 66
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.97 E-value=1.5e-30 Score=277.88 Aligned_cols=326 Identities=16% Similarity=0.054 Sum_probs=220.4
Q ss_pred CCCCChhHHHH------------hhhcCCcEEEEeCCCchhhHHHH---------------HHHHHh----cC-------
Q psy14461 42 PSFETPPAYIS------------RLSYENRILIFTHAVLREENARA---------------ERYLNA----RG------- 83 (535)
Q Consensus 42 p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp~~~~~~---------------k~~~~~----~~------- 83 (535)
|...+.+.|+. .+.+.|++.-...+.||+.|..+ ++...+ .+
T Consensus 59 P~~~~i~~~~~~~~~g~~~~a~~~~~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~ 138 (485)
T TIGR01317 59 PLNNLIPEFNDLVFRGRWKEALDRLHATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPP 138 (485)
T ss_pred CCCCcHHHHHHHHHCCCHHHHHHHHHhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCC
Confidence 66667766644 35667888887889999888764 222210 00
Q ss_pred CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc-ccccccccccccchhhcccccccccccccCHHHHHH
Q psy14461 84 DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR-KKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATK 162 (535)
Q Consensus 84 ~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~-~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (535)
..-.-.+++|||+|++|+.+|..+...+.+|+|||+.+.+++. +.++|.+ ..+. .+..
T Consensus 139 ~~~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~--------------------~~~~-~~~~ 197 (485)
T TIGR01317 139 SKRTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNM--------------------KLDK-AIVD 197 (485)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCc--------------------cCCH-HHHH
Confidence 0111258999999999999999888888999999998865321 1122221 0111 1211
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCce-ecC-CCCC---CceechhhHHh-
Q psy14461 163 LIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERR-CLP-EPRN---SALISADDLFR- 236 (535)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~-p~~-~i~G---~~v~~~~~~~~- 236 (535)
+ ..+.+++.||+++.++... ..+..+.....||+||||||++ |+. ++|| +++++..+++.
T Consensus 198 ~-----------~~~~~~~~Gv~~~~~~~v~---~~~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~ 263 (485)
T TIGR01317 198 R-----------RIDLLSAEGIDFVTNTEIG---VDISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPS 263 (485)
T ss_pred H-----------HHHHHHhCCCEEECCCEeC---CccCHHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHH
Confidence 1 1255677899998876432 1122222346799999999998 777 8998 46666544331
Q ss_pred -----c----------cCCCCcEEEECCChHHHHHHHHHHhCC-CcEEEEEc-CcCCccC---------cH--HHHHHHH
Q psy14461 237 -----L----------GAWPGKTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RRLLKHF---------DQ--EMVRILL 288 (535)
Q Consensus 237 -----~----------~~~~k~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~~l~~~---------~~--~~~~~~~ 288 (535)
. ...+++|+|||||++|+|+|..+.++| .+|+++++ +..+... .. ++....+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~ 343 (485)
T TIGR01317 264 ATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHE 343 (485)
T ss_pred HhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHH
Confidence 0 124689999999999999998888887 47999987 6544211 11 1222334
Q ss_pred HhhhcCCeEE--cceEEEEEEEeCCCcE-EEEE-----ecCC---------CCCceEEEcCEEEEccCCC-CCCCCCCcc
Q psy14461 289 SSLTKAGVSI--QCCVIEKVISSFDGMK-GVRG-----FHPE---------SKEPFADVFKTVVNAMEKK-FDFAALNLH 350 (535)
Q Consensus 289 ~~l~~~gV~i--~~~~v~~i~~~~~~~~-~v~~-----~~~~---------~G~~~~~~~D~vi~a~G~~-p~~~~l~l~ 350 (535)
+..+..|+.+ ++..+.+|..++++++ .+++ .... .|+++++++|.||+|+|+. |++.++ +
T Consensus 344 e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~--~ 421 (485)
T TIGR01317 344 EAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILL--D 421 (485)
T ss_pred hhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccc--c
Confidence 4444456643 5777888866422343 2332 1111 2345689999999999996 888876 6
Q ss_pred ccCeeecCCCceE-cCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461 351 HIGVDIKKKSYVV-CNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 351 ~~gl~~~~~G~i~-vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 405 (535)
..+++++++|++. +|++++|+.|+|||+|||+ .++.++..|+.+|+.||.+|..
T Consensus 422 ~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~-~g~~~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 422 DFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCR-RGQSLIVWAINEGRKAAAAVDR 476 (485)
T ss_pred ccCcccCCCCCEEecCCCceECCCCEEEeeccC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 7788888889885 4678999999999999999 7788889999999999999853
No 67
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=1.2e-29 Score=261.37 Aligned_cols=277 Identities=18% Similarity=0.132 Sum_probs=196.6
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc-cccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK-KRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF 167 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (535)
.+|+|||+|++|+.+|......+.+|+|||+.+.+++.. ..++.+ ..+...+.
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~--------------------~~~~~~~~------ 72 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEF--------------------RIPIERVR------ 72 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCccc--------------------ccCHHHHH------
Confidence 568999999999999998888899999999988653221 111110 01111111
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeEEEEec-C------CE-----EEEceeEEEcceEEEeeCce-ecC-CCCC---Cceec
Q psy14461 168 CIRAKNDSMRELKALGIDIVRTAAAFTN-P------HT-----IKLSNRSVTGFNFLLAVERR-CLP-EPRN---SALIS 230 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~-~------~~-----v~~~~~~~~~d~lViATGs~-p~~-~i~G---~~v~~ 230 (535)
.. ...+.+.+++++.++..... . .. +...+..+.||+||||||++ |.. ++|| ..+++
T Consensus 73 -----~~-~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~ 146 (352)
T PRK12770 73 -----EG-VKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYS 146 (352)
T ss_pred -----HH-HHHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCcee
Confidence 11 12344569998887644221 1 01 11112347899999999994 666 8888 45666
Q ss_pred hhhHHh-----------ccCC----CCcEEEECCChHHHHHHHHHHhCCCc-EEEEEc-CcCCccCcHHHHHHHHHhhhc
Q psy14461 231 ADDLFR-----------LGAW----PGKTLVLGGSLMAVEIAATLNFLGVP-VTLVYS-RRLLKHFDQEMVRILLSSLTK 293 (535)
Q Consensus 231 ~~~~~~-----------~~~~----~k~vvViGgG~~g~e~A~~l~~~g~~-Vtlv~~-~~~l~~~~~~~~~~~~~~l~~ 293 (535)
..++.. .... +++++|||+|++|+|+|..|.+.|.+ |+++++ +....... ....+.|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~----~~~~~~l~~ 222 (352)
T PRK12770 147 ALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAG----KYEIERLIA 222 (352)
T ss_pred HHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCC----HHHHHHHHH
Confidence 544321 1111 47999999999999999999999987 999998 53222121 233456888
Q ss_pred CCeEE-cceEEEEEEEeCCCcEEEEEecC---------------CCCCceEEEcCEEEEccCCCCCCCCCCccc-cCeee
Q psy14461 294 AGVSI-QCCVIEKVISSFDGMKGVRGFHP---------------ESKEPFADVFKTVVNAMEKKFDFAALNLHH-IGVDI 356 (535)
Q Consensus 294 ~gV~i-~~~~v~~i~~~~~~~~~v~~~~~---------------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~-~gl~~ 356 (535)
+||++ ++..+++++.. +....|++.+. .+|++.++++|.+++++|++|++.+. .. .++++
T Consensus 223 ~gi~i~~~~~v~~i~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~--~~~~g~~~ 299 (352)
T PRK12770 223 RGVEFLELVTPVRIIGE-GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFA--KECLGIEL 299 (352)
T ss_pred cCCEEeeccCceeeecC-CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhh--hcccCcee
Confidence 99999 99999999754 22223443210 13455589999999999999998765 33 78888
Q ss_pred cCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461 357 KKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 357 ~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 405 (535)
+++|+|.||++++|+.|+|||+|||+ +.+.++..|+.||+.||.+|..
T Consensus 300 ~~~g~i~vd~~~~t~~~~vyaiGD~~-~~~~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 300 NRKGEIVVDEKHMTSREGVFAAGDVV-TGPSKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred cCCCcEeeCCCcccCCCCEEEEcccc-cCcchHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999 7788999999999999999864
No 68
>PRK13984 putative oxidoreductase; Provisional
Probab=99.97 E-value=1.6e-29 Score=277.99 Aligned_cols=329 Identities=19% Similarity=0.161 Sum_probs=220.1
Q ss_pred CCCccccccCCCCCCChhHHHH------------hhhcCCcEEEEeCCCchhhHHHH---------------HHHHH-h-
Q psy14461 31 CSPTASSCDLLPSFETPPAYIS------------RLSYENRILIFTHAVLREENARA---------------ERYLN-A- 81 (535)
Q Consensus 31 ~~~~~~~~~~~p~~~~l~~~~~------------~~i~~~~v~v~~k~~cp~~~~~~---------------k~~~~-~- 81 (535)
|-.+...| |....++.++. .+.+.|+...+..+.||+.|..+ ++... .
T Consensus 190 Cg~C~~~C---P~~~~i~~~~~~i~~~~~~~a~~~~~~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~ 266 (604)
T PRK13984 190 CGICTDTC---PAHMDIPQYIKAIYKDDLEEGLRWLYKTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNV 266 (604)
T ss_pred CCcccccC---CCCCCHHHHHHHHHcCCHHHHHHHHHhcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHH
Confidence 34455566 55556665544 34566888888899999888764 11110 0
Q ss_pred ----c------CCcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhccccccccc
Q psy14461 82 ----R------GDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALN 151 (535)
Q Consensus 82 ----~------~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~ 151 (535)
. .....-.+++|||+|++|+.+|..+...+.+|+|+|+++.+++ .+.+ +++..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG----~~~~--~i~~~----------- 329 (604)
T PRK13984 267 PVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG----VMRY--GIPSY----------- 329 (604)
T ss_pred HHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc----eEee--cCCcc-----------
Confidence 0 0011245789999999999999988888999999999986532 2211 01110
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCce-ecC-CCCC---C
Q psy14461 152 VTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERR-CLP-EPRN---S 226 (535)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~-p~~-~i~G---~ 226 (535)
.. ..++..+ ..+.++..|++++.++.... .+..+.....||+||||||+. |+. ++|| .
T Consensus 330 --~~-~~~~~~~-----------~~~~~~~~gv~~~~~~~v~~---~~~~~~~~~~yD~vilAtGa~~~r~l~i~G~~~~ 392 (604)
T PRK13984 330 --RL-PDEALDK-----------DIAFIEALGVKIHLNTRVGK---DIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHP 392 (604)
T ss_pred --cC-CHHHHHH-----------HHHHHHHCCcEEECCCEeCC---cCCHHHHHhcCCEEEEEcCcCCCccCCCCCcCCc
Confidence 00 1112211 12456778999888764321 122222345799999999997 456 8999 4
Q ss_pred ceechhhHHhc-----------cCCCCcEEEECCChHHHHHHHHHHhCCC------cEEEEEc---CcCCccCcHHHHHH
Q psy14461 227 ALISADDLFRL-----------GAWPGKTLVLGGSLMAVEIAATLNFLGV------PVTLVYS---RRLLKHFDQEMVRI 286 (535)
Q Consensus 227 ~v~~~~~~~~~-----------~~~~k~vvViGgG~~g~e~A~~l~~~g~------~Vtlv~~---~~~l~~~~~~~~~~ 286 (535)
++++..+++.. ...+++|+|||||++|+|+|..|.+++. +|+++.. ...++....++
T Consensus 393 gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~--- 469 (604)
T PRK13984 393 DVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEI--- 469 (604)
T ss_pred CeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHH---
Confidence 56766665431 1236899999999999999999998853 7888743 22344333332
Q ss_pred HHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEec-----CC---------CCCceEEEcCEEEEccCCCCCCCCCCcc
Q psy14461 287 LLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFH-----PE---------SKEPFADVFKTVVNAMEKKFDFAALNLH 350 (535)
Q Consensus 287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~-----~~---------~G~~~~~~~D~vi~a~G~~p~~~~l~l~ 350 (535)
.+ +.++||++ ++..++++..+ ++++ .|++.. .. +|+++++++|.||+|+|++||++++..+
T Consensus 470 -~~-~~~~GV~i~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~ 546 (604)
T PRK13984 470 -EE-GLEEGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEE 546 (604)
T ss_pred -HH-HHHcCCEEEeCCCCEEEEcc-CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhh
Confidence 22 23579999 99888888654 3443 233321 01 2344589999999999999999876311
Q ss_pred -ccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461 351 -HIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 351 -~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 405 (535)
..+++. ++|+|.||++++|++|+|||+||++ .++.+ ..|+++|+.||.+|..
T Consensus 547 ~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~-~~~~~-v~Ai~~G~~AA~~I~~ 599 (604)
T PRK13984 547 LKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIV-HGPDI-IHGVADGYWAAEGIDM 599 (604)
T ss_pred hccCccc-cCCeEEeCCCCccCCCCEEEecCcC-CchHH-HHHHHHHHHHHHHHHH
Confidence 123555 4788999999999999999999999 66654 6799999999999863
No 69
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.97 E-value=1.3e-28 Score=268.40 Aligned_cols=343 Identities=20% Similarity=0.213 Sum_probs=233.5
Q ss_pred hcchhhhcCCccccccccCCCccccccCCCCCCChhHHHHh------------hhcCCcEEEEeCCCchhhHHHH-----
Q psy14461 13 TSGLNAIHAIPSFHEAKTCSPTASSCDLLPSFETPPAYISR------------LSYENRILIFTHAVLREENARA----- 75 (535)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~------------~i~~~~v~v~~k~~cp~~~~~~----- 75 (535)
+.+..+.+ .|.|+. ...++..+| |...+++.|+.. +.+.|++.....+.||++|..+
T Consensus 31 ~~~~~~~~-~~~~~~--~~~~C~~~C---P~~~~i~~~~~~~~~g~~~~a~~~~~~~np~~~~~grvc~~~ce~~C~r~~ 104 (564)
T PRK12771 31 ATGPWRHK-CPVYVD--QTPPCNAAC---PAGEDIRGWLALVRGGDYEYAWRRLTKDNPFPAVMGRVCYHPCESGCNRGQ 104 (564)
T ss_pred hccccccc-cccccC--CCCccccCC---CCCCcHHHHHHHHHCCCHHHHHHHHHHhCCcchHhhCcCCchhHHhccCCC
Confidence 34444433 465652 445666778 888888888664 4566888888899999888764
Q ss_pred ----------HHHHH----hcC------CcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccc
Q psy14461 76 ----------ERYLN----ARG------DRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPV 135 (535)
Q Consensus 76 ----------k~~~~----~~~------~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~ 135 (535)
++... ..+ ....-.+|+|||+||+|+.+|..+...+.+|+++|+.+.+++. +.+
T Consensus 105 ~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~----l~~-- 178 (564)
T PRK12771 105 VDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGM----MRY-- 178 (564)
T ss_pred CCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCe----eee--
Confidence 22210 000 0011246899999999999999888888899999998876432 211
Q ss_pred cccchhhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEee
Q psy14461 136 AMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV 215 (535)
Q Consensus 136 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViAT 215 (535)
+++.. .+.. ++.... .+.+.+.|+++..+.....+ +........||+||+||
T Consensus 179 gip~~-------------~~~~-~~~~~~-----------l~~~~~~Gv~~~~~~~~~~~---~~~~~~~~~~D~Vi~At 230 (564)
T PRK12771 179 GIPAY-------------RLPR-EVLDAE-----------IQRILDLGVEVRLGVRVGED---ITLEQLEGEFDAVFVAI 230 (564)
T ss_pred cCCCc-------------cCCH-HHHHHH-----------HHHHHHCCCEEEeCCEECCc---CCHHHHHhhCCEEEEee
Confidence 12211 1111 111111 13456689988776532111 11111224699999999
Q ss_pred CceecC--CCCC---CceechhhHHhc------cCCCCcEEEECCChHHHHHHHHHHhCC-CcEEEEEc-Cc-CCccCcH
Q psy14461 216 ERRCLP--EPRN---SALISADDLFRL------GAWPGKTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RR-LLKHFDQ 281 (535)
Q Consensus 216 Gs~p~~--~i~G---~~v~~~~~~~~~------~~~~k~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~-~l~~~~~ 281 (535)
|+.+.. .++| .+++...+++.. ...+++|+|||+|++|+++|..+.+++ .+|+++++ +. .++....
T Consensus 231 G~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~ 310 (564)
T PRK12771 231 GAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDE 310 (564)
T ss_pred CCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHH
Confidence 997543 7777 345555444421 234689999999999999999999998 67999988 43 3444444
Q ss_pred HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEE---ec---CC-------CCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 282 EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRG---FH---PE-------SKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 282 ~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~---~~---~~-------~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
++. ...+.||++ ++..+.++..++++.+.+++ +. .. +|+++++++|.||+|+|+.|++.++
T Consensus 311 ~~~-----~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~ 385 (564)
T PRK12771 311 EIE-----EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGL 385 (564)
T ss_pred HHH-----HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhh
Confidence 332 234579999 99999999765333322221 10 01 3555689999999999999998876
Q ss_pred Cccc-cCeeecCCCceEcCC-CCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461 348 NLHH-IGVDIKKKSYVVCNE-KDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY 404 (535)
Q Consensus 348 ~l~~-~gl~~~~~G~i~vd~-~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~ 404 (535)
+. .+++ +++|+|.+|+ +++|+.|+|||+||++ .++.++..|+.||+.||.+|.
T Consensus 386 --~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~-~g~~~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 386 --ESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMV-PGPRTVTTAIGHGKKAARNID 440 (564)
T ss_pred --hhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcC-CCchHHHHHHHHHHHHHHHHH
Confidence 43 5677 7789999998 7899999999999999 778899999999999999984
No 70
>KOG0399|consensus
Probab=99.96 E-value=1.6e-29 Score=269.71 Aligned_cols=338 Identities=14% Similarity=0.086 Sum_probs=231.8
Q ss_pred CCccccccccCCCccccc---cCCCCCCCh------hHHHHhhhcCCcEEEEeCCCchhhHHHH----------------
Q psy14461 21 AIPSFHEAKTCSPTASSC---DLLPSFETP------PAYISRLSYENRILIFTHAVLREENARA---------------- 75 (535)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~---~~~p~~~~l------~~~~~~~i~~~~v~v~~k~~cp~~~~~~---------------- 75 (535)
.+||||.. +.| |-+|.|+++ +..+..+.+.|++..|+.+.||++|.-+
T Consensus 1690 gtpfc~~~-------~gcpl~n~ip~~nelvfk~~wk~al~~ll~tnnfpeftgrvcpapcegactlgiie~pv~iksie 1762 (2142)
T KOG0399|consen 1690 GTPFCQSD-------SGCPLGNIIPKFNELVFKNQWKEALEQLLETNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIE 1762 (2142)
T ss_pred CCccccCC-------CCCccccccccHHHHHHHHHHHHHHHHHHhhCCCccccCccCCCCcCcceeeecccCCccccchh
Confidence 57888752 335 448999888 4446678999999999999999999764
Q ss_pred -----HHHHHhcCCc-----ceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhccc
Q psy14461 76 -----ERYLNARGDR-----FAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQD 145 (535)
Q Consensus 76 -----k~~~~~~~~~-----~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~ 145 (535)
+.+....=+. -.-.+|.|||+||+|++||-++...++.|+++||.+.+ +++..| +++
T Consensus 1763 ~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~----ggll~y--gip------- 1829 (2142)
T KOG0399|consen 1763 CAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV----GGLLMY--GIP------- 1829 (2142)
T ss_pred hHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc----Cceeee--cCC-------
Confidence 1111100000 11246799999999999999999999999999999976 455555 255
Q ss_pred ccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCce-ecC-CC
Q psy14461 146 STSALNVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERR-CLP-EP 223 (535)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~-p~~-~i 223 (535)
+++.|.. +++++- +++...||+|+.++ .-++.+.++...-.+|+||+|+||. |+. |+
T Consensus 1830 ------nmkldk~-vv~rrv-----------~ll~~egi~f~tn~---eigk~vs~d~l~~~~daiv~a~gst~prdlpv 1888 (2142)
T KOG0399|consen 1830 ------NMKLDKF-VVQRRV-----------DLLEQEGIRFVTNT---EIGKHVSLDELKKENDAIVLATGSTTPRDLPV 1888 (2142)
T ss_pred ------ccchhHH-HHHHHH-----------HHHHhhCceEEeec---cccccccHHHHhhccCeEEEEeCCCCCcCCCC
Confidence 4555654 444433 67888899999876 2345577666666799999999995 666 99
Q ss_pred CC---CceechhhHHhc---------------cCCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc----------Cc
Q psy14461 224 RN---SALISADDLFRL---------------GAWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS----------RR 274 (535)
Q Consensus 224 ~G---~~v~~~~~~~~~---------------~~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~----------~~ 274 (535)
|| ++++.+-+++.. ...+|+|+|||||++|.+|-..-.|+|+ .|.-++- ++
T Consensus 1889 ~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~n 1968 (2142)
T KOG0399|consen 1889 PGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDN 1968 (2142)
T ss_pred CCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCC
Confidence 99 566555554431 2357899999999999999999999986 4444432 34
Q ss_pred CCccCcH---------HHHHHHHH----------hh-hcCCeEEcceEEEEE--EEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461 275 LLKHFDQ---------EMVRILLS----------SL-TKAGVSIQCCVIEKV--ISSFDGMKGVRGFHPESKEPFADVFK 332 (535)
Q Consensus 275 ~l~~~~~---------~~~~~~~~----------~l-~~~gV~i~~~~v~~i--~~~~~~~~~v~~~~~~~G~~~~~~~D 332 (535)
++|+++. +..+..-+ .+ ...+-++++-+..++ ++++.+.+.+.- ..++++.++||
T Consensus 1969 pwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~e---i~~see~~ead 2045 (2142)
T KOG0399|consen 1969 PWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKE---INNSEEIIEAD 2045 (2142)
T ss_pred CCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEE---cCCcceeeecc
Confidence 4554431 22111111 11 111111222222222 222223333221 24566789999
Q ss_pred EEEEccCCCCCCCCCCccccCeeecCCCceEcC-CCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461 333 TVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCN-EKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY 404 (535)
Q Consensus 333 ~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd-~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~ 404 (535)
+||+|.|+......+ .++.+++.|+++.|.+- +.+.|++++|||+|||. .+..++.+|+++||.+|+.+-
T Consensus 2046 lv~lamgf~gpe~~~-~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcr-rgqslvvwai~egrq~a~~vd 2116 (2142)
T KOG0399|consen 2046 LVILAMGFVGPEKSV-IEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCR-RGQSLVVWAIQEGRQAARQVD 2116 (2142)
T ss_pred eeeeeccccCcchhh-hhhcCcccCccccccCCCccccccccceeeccccc-CCceEEEEEehhhhHHHHHHH
Confidence 999999998665554 37788999999888764 56899999999999999 888999999999999999864
No 71
>KOG0404|consensus
Probab=99.95 E-value=1.7e-27 Score=216.00 Aligned_cols=286 Identities=15% Similarity=0.098 Sum_probs=209.8
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC 168 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (535)
-+|+|||+|||+-.+|++..+...+-+|||-...-...+++.+. -...+.++|+|. ..+...+++++++
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLt----TTT~veNfPGFP----dgi~G~~l~d~mr--- 77 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLT----TTTDVENFPGFP----DGITGPELMDKMR--- 77 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceee----eeeccccCCCCC----cccccHHHHHHHH---
Confidence 47899999999999999999999999999965432222233221 122345566663 3445566777665
Q ss_pred HHHHHHHHHHHHhcCcEEEEeEEEEec----CCEEEEceeEEEcceEEEeeCceecC-CCCC--Cc-eec--------hh
Q psy14461 169 IRAKNDSMRELKALGIDIVRTAAAFTN----PHTIKLSNRSVTGFNFLLAVERRCLP-EPRN--SA-LIS--------AD 232 (535)
Q Consensus 169 ~~~~~~~~~~~~~~gV~~~~g~~~~~~----~~~v~~~~~~~~~d~lViATGs~p~~-~i~G--~~-v~~--------~~ 232 (535)
.+.++.|.+++..++..++ +..+..+.+.+.+|.||+|||+..++ .+|| +. +|. ++
T Consensus 78 --------kqs~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCD 149 (322)
T KOG0404|consen 78 --------KQSERFGTEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCD 149 (322)
T ss_pred --------HHHHhhcceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhccc
Confidence 5667789999988876543 34565566889999999999999998 8888 22 221 11
Q ss_pred hHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeC
Q psy14461 233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSF 310 (535)
Q Consensus 233 ~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~ 310 (535)
.+..+ -..|-.+|||||++++|-|.+|.+.+.+|++++| +++.. ...++ ++..+..+|++ +++.+.+..++
T Consensus 150 Gaapi-frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA--s~~Mq---~ra~~npnI~v~~nt~~~ea~gd- 222 (322)
T KOG0404|consen 150 GAAPI-FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA--SKIMQ---QRAEKNPNIEVLYNTVAVEALGD- 222 (322)
T ss_pred Ccchh-hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH--HHHHH---HHHhcCCCeEEEechhhhhhccC-
Confidence 11111 1247799999999999999999999999999999 76543 12222 23344668999 99988887764
Q ss_pred CCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCC-CCCcCCCCEEEeCCcCCCCCCc
Q psy14461 311 DGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE-KDQTSVGNIFAVGGIVHGKPNN 388 (535)
Q Consensus 311 ~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~T~~~~IyA~GD~~~~~~~~ 388 (535)
.+.+ .+.+++...|++..++++-++.++|..|++.++ +. ++++|++|+|++-+ ...||+|++||+||+......+
T Consensus 223 ~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l--~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQ 299 (322)
T KOG0404|consen 223 GKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFL--KG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQ 299 (322)
T ss_pred cccccceEEEecccCcccccccceeEEEecCCchhhHh--cC-ceeeccCceEEeccCcccccccceeeccccchHHHHH
Confidence 2222 355555568888899999999999999999998 44 79999999999984 5679999999999998545567
Q ss_pred HHHHHHHHHHHHHHH
Q psy14461 389 ASMAAISARLIIERL 403 (535)
Q Consensus 389 ~~~A~~~g~~aa~~i 403 (535)
+..|...|.+||...
T Consensus 300 AvTaAgsGciaaldA 314 (322)
T KOG0404|consen 300 AVTAAGSGCIAALDA 314 (322)
T ss_pred HHhhhccchhhhhhH
Confidence 777888888877543
No 72
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.95 E-value=2.3e-26 Score=242.37 Aligned_cols=282 Identities=15% Similarity=0.063 Sum_probs=192.7
Q ss_pred EEEEeeCCccHHHHHHHHHhh--CCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQT--NQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR 166 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~--~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (535)
.+|+|||+||||+.+|..+.. .+.+|+|||+.+.++ |+..| ++.. .......+.
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg----Glvr~--gvaP-------------~~~~~k~v~----- 82 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF----GLVRS--GVAP-------------DHPETKNVT----- 82 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc----ceEee--ccCC-------------CcchhHHHH-----
Confidence 568999999999999987654 689999999998653 33322 1110 000111111
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCcee-cC-CCCC---CceechhhHHhc----
Q psy14461 167 FCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRC-LP-EPRN---SALISADDLFRL---- 237 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p-~~-~i~G---~~v~~~~~~~~~---- 237 (535)
..+...++..+|+++.+.. . ++.+++++....||+||||||+.+ +. +||| ++++++.+++.+
T Consensus 83 ------~~~~~~~~~~~v~~~~nv~-v--g~dvtl~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~ 153 (491)
T PLN02852 83 ------NQFSRVATDDRVSFFGNVT-L--GRDVSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGH 153 (491)
T ss_pred ------HHHHHHHHHCCeEEEcCEE-E--CccccHHHHhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcc
Confidence 1122445667888776532 1 344555554457999999999986 55 8999 678888777431
Q ss_pred ------c---CCCCcEEEECCChHHHHHHHHHHhC--------------------CC-cEEEEEc-Cc-CCccCcHHHH-
Q psy14461 238 ------G---AWPGKTLVLGGSLMAVEIAATLNFL--------------------GV-PVTLVYS-RR-LLKHFDQEMV- 284 (535)
Q Consensus 238 ------~---~~~k~vvViGgG~~g~e~A~~l~~~--------------------g~-~Vtlv~~-~~-~l~~~~~~~~- 284 (535)
. ..+++|+|||+|++|+|+|..|.+. |. +|+++.| .. -.+...+++.
T Consensus 154 ~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elre 233 (491)
T PLN02852 154 PDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRE 233 (491)
T ss_pred hhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHH
Confidence 1 2468999999999999999998875 64 6999998 42 1111111111
Q ss_pred ------------------------------------HHHHHhhhc---------CCeEE-cceEEEEEEEeC--CCcE-E
Q psy14461 285 ------------------------------------RILLSSLTK---------AGVSI-QCCVIEKVISSF--DGMK-G 315 (535)
Q Consensus 285 ------------------------------------~~~~~~l~~---------~gV~i-~~~~v~~i~~~~--~~~~-~ 315 (535)
+.+.+...+ ++|.+ +...+++|...+ ++++ .
T Consensus 234 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~ 313 (491)
T PLN02852 234 LLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAG 313 (491)
T ss_pred HhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEE
Confidence 112222112 57999 999999997421 2343 3
Q ss_pred EEEecC--------------CCCCceEEEcCEEEEccCCC--CCCCC-CCccccCeeecCCCceEcCCCCCcCCCCEEEe
Q psy14461 316 VRGFHP--------------ESKEPFADVFKTVVNAMEKK--FDFAA-LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV 378 (535)
Q Consensus 316 v~~~~~--------------~~G~~~~~~~D~vi~a~G~~--p~~~~-l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~ 378 (535)
+++..+ .+|+++++++|.||.++|++ |...+ +. ...++..+++|+|.+|+.++|+.|||||+
T Consensus 314 l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~-~~~gv~~n~~G~V~~d~~~~T~ipGvyAa 392 (491)
T PLN02852 314 VKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFD-HKRGVVPNVHGRVLSSASGADTEPGLYVV 392 (491)
T ss_pred EEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccc-cCcCeeECCCceEEeCCCCccCCCCEEEe
Confidence 444311 14666789999999999998 55553 21 33467778899999998889999999999
Q ss_pred CCcCCCCCC-cHHHHHHHHHHHHHHHhC
Q psy14461 379 GGIVHGKPN-NASMAAISARLIIERLYG 405 (535)
Q Consensus 379 GD~~~~~~~-~~~~A~~~g~~aa~~i~g 405 (535)
|||. .+|. ++..++.+|+.+|.+|+.
T Consensus 393 GDi~-~Gp~gvI~t~~~dA~~ta~~i~~ 419 (491)
T PLN02852 393 GWLK-RGPTGIIGTNLTCAEETVASIAE 419 (491)
T ss_pred eeEe-cCCCCeeeecHhhHHHHHHHHHH
Confidence 9999 5554 888999999999999985
No 73
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.95 E-value=1e-25 Score=236.79 Aligned_cols=377 Identities=19% Similarity=0.118 Sum_probs=267.2
Q ss_pred EEeeCCccHHHHHHH--HHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461 91 LDRIGDEGILLEEEL--KRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC 168 (535)
Q Consensus 91 v~iiG~G~aG~~~al--~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (535)
++|+|+|.+|+.++. ++.....+++++.++....|..+.++.+ +... ..+...+...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~---~~~~-------------~~~~~~~~~~----- 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLY---VGGG-------------IASLEDLRYP----- 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchH---Hhcc-------------cCCHHHhccc-----
Confidence 478999999999886 4555778999999999888888877665 3321 0111111110
Q ss_pred HHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEceeEEEcceEEEeeCceecC-CCCC-Ccee---chhhHHhcc--
Q psy14461 169 IRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSNRSVTGFNFLLAVERRCLP-EPRN-SALI---SADDLFRLG-- 238 (535)
Q Consensus 169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~~~~~~d~lViATGs~p~~-~i~G-~~v~---~~~~~~~~~-- 238 (535)
.. ...+.++++..++ +..++ .+.+.+.+.++.||++++|||++|.. +... ..++ ...+...+.
T Consensus 60 ------~~-~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (415)
T COG0446 60 ------PR-FNRATGIDVRTGTEVTSIDPENKVVLLDDGEIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGG 132 (415)
T ss_pred ------ch-hHHhhCCEEeeCCEEEEecCCCCEEEECCCcccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHH
Confidence 00 1135578877754 44444 56777766689999999999999988 5111 2232 333333322
Q ss_pred -CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc-HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE
Q psy14461 239 -AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD-QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK 314 (535)
Q Consensus 239 -~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~-~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~ 314 (535)
...++++|+|+|++|+|+|..++++|.+|++++. +++++.+. +++.+.+.+.++++||++ .+..+.+|+... +..
T Consensus 133 ~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~-~~~ 211 (415)
T COG0446 133 AEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKG-NTL 211 (415)
T ss_pred HhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEccc-Ccc
Confidence 2258999999999999999999999999999999 99988777 899999999999999999 999999998752 222
Q ss_pred E---EEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccC-eeecCCCceEcCCCCCcC-CCCEEEeCCcCCC---C-
Q psy14461 315 G---VRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG-VDIKKKSYVVCNEKDQTS-VGNIFAVGGIVHG---K- 385 (535)
Q Consensus 315 ~---v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~g-l~~~~~G~i~vd~~~~T~-~~~IyA~GD~~~~---~- 385 (535)
. +.. .++. .+++|.+++++|.+||+.+. ...+ .....+|+|.||++++|+ .++|||+|||+.. .
T Consensus 212 ~~~~~~~---~~~~--~~~~d~~~~~~g~~p~~~l~--~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~ 284 (415)
T COG0446 212 VVERVVG---IDGE--EIKADLVIIGPGERPNVVLA--NDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAET 284 (415)
T ss_pred eeeEEEE---eCCc--EEEeeEEEEeecccccHHHH--hhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccC
Confidence 2 233 2566 89999999999999997665 3332 134567899999999997 9999999998851 0
Q ss_pred -----CCcHHHHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCCEE-EEEEecCCccccc
Q psy14461 386 -----PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLV-IYKSSYPTFDNLL 459 (535)
Q Consensus 386 -----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~-~~~~~~~~~~~~~ 459 (535)
......|..++++++.++.+. ..........+...++......|+++. .+. . +. +............
T Consensus 285 ~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~-~---~~~~~~~~~~~~~~~~ 357 (415)
T COG0446 285 GKGGRIALWAIAVAAGRIAAENIAGA-LRIPGLLGTVISDVGDLCAASTGLTEG--KER-G---IDVVLVVSGGKDPRAH 357 (415)
T ss_pred CceeeeechhhHhhhhHHHHHHhccc-cccccccCceEEEEcCeEEEEecCCcc--ccc-c---eeeeEEEeccCccccc
Confidence 224457999999999999986 222222223345667888999999998 222 2 22 1111121111111
Q ss_pred CCCCCcchhhhhhccCCcccccccccCcceEEEEEEECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcC
Q psy14461 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDG 534 (535)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~ 534 (535)
... .......|+.++.++++++|++. -. ....++.++.++..+.++.++..
T Consensus 358 -~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 408 (415)
T COG0446 358 -LYP---------------------GAELVGIKLVGDADTGRILGGQE-LE-VLKRIGALALAIGLGDTVAELDA 408 (415)
T ss_pred -ccC---------------------CCCeEEEEEEEcCcccceehhhh-HH-HHhhhhhhhhhhhhcCchhhhhh
Confidence 000 12355889999999999999999 44 77899999999999988887653
No 74
>KOG2495|consensus
Probab=99.95 E-value=1.3e-26 Score=229.45 Aligned_cols=278 Identities=14% Similarity=0.116 Sum_probs=203.8
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC 168 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (535)
.+|+|+|.|.+|++..-...+...+|+||+...++-+.+ .+|..+ ...++...+.+..+
T Consensus 56 k~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTP-LLpS~~-----------------vGTve~rSIvEPIr--- 114 (491)
T KOG2495|consen 56 KRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTP-LLPSTT-----------------VGTVELRSIVEPIR--- 114 (491)
T ss_pred ceEEEEcCchHHHHHHHhccccccceEEeccccceEEee-ccCCcc-----------------ccceeehhhhhhHH---
Confidence 567999999998888777777889999999998875542 233321 12233333443332
Q ss_pred HHHHHHHHHHHHhc--CcEEEEeEEEEec--CCEEEEce---------eEEEcceEEEeeCceecC-CCCC--Cceec--
Q psy14461 169 IRAKNDSMRELKAL--GIDIVRTAAAFTN--PHTIKLSN---------RSVTGFNFLLAVERRCLP-EPRN--SALIS-- 230 (535)
Q Consensus 169 ~~~~~~~~~~~~~~--gV~~~~g~~~~~~--~~~v~~~~---------~~~~~d~lViATGs~p~~-~i~G--~~v~~-- 230 (535)
....+. ++.++..+...+| .+.|.++. ..+.||+||+|+|+.+.. .||| ++.+.
T Consensus 115 --------~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLK 186 (491)
T KOG2495|consen 115 --------AIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLK 186 (491)
T ss_pred --------HHhhccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhh
Confidence 333332 6777777766654 45666532 578999999999999999 9999 43322
Q ss_pred -hhhHHhc-------------cC-------CCCcEEEECCChHHHHHHHHHHhC--------------CCcEEEEEc-Cc
Q psy14461 231 -ADDLFRL-------------GA-------WPGKTLVLGGSLMAVEIAATLNFL--------------GVPVTLVYS-RR 274 (535)
Q Consensus 231 -~~~~~~~-------------~~-------~~k~vvViGgG~~g~e~A~~l~~~--------------g~~Vtlv~~-~~ 274 (535)
..|+.+. .. .--++||||||++|+|+|..|+.. -.+||+++. ++
T Consensus 187 Ev~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 187 EVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 1222211 01 113689999999999999988753 258999999 99
Q ss_pred CCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccC
Q psy14461 275 LLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG 353 (535)
Q Consensus 275 ~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~g 353 (535)
+|+.|+..+.++.++.+.+.||++ .++.|+.++.+ .+.+.. .+|+..++++-+++|++|..|..-. ..+.
T Consensus 267 iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~---~I~~~~---~~g~~~~iPYG~lVWatG~~~rp~~---k~lm 337 (491)
T KOG2495|consen 267 ILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEK---TIHAKT---KDGEIEEIPYGLLVWATGNGPRPVI---KDLM 337 (491)
T ss_pred HHHHHHHHHHHHHHHHhhhccceeecccEEEeecCc---EEEEEc---CCCceeeecceEEEecCCCCCchhh---hhHh
Confidence 999999999999999999999999 99999998743 344443 3788789999999999998776432 2222
Q ss_pred eeecCCC--ceEcCCCCCc-CCCCEEEeCCcCC--CCCCcHHHHHHHHHHHHHHHh
Q psy14461 354 VDIKKKS--YVVCNEKDQT-SVGNIFAVGGIVH--GKPNNASMAAISARLIIERLY 404 (535)
Q Consensus 354 l~~~~~G--~i~vd~~~~T-~~~~IyA~GD~~~--~~~~~~~~A~~~g~~aa~~i~ 404 (535)
-.+++.| .+.||++||. +.+||||+|||+. +.+.++.+|.+||.++|+++-
T Consensus 338 ~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 338 KQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred hcCCccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHH
Confidence 3344555 7999999996 8999999999993 445588899999999999973
No 75
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.93 E-value=7.1e-26 Score=236.39 Aligned_cols=331 Identities=19% Similarity=0.114 Sum_probs=233.6
Q ss_pred cCCCCCCCh------hHHHHhhhcCCcEEEEeCCCchhh--HHHH---------------HHHHH-----------hcCC
Q psy14461 39 DLLPSFETP------PAYISRLSYENRILIFTHAVLREE--NARA---------------ERYLN-----------ARGD 84 (535)
Q Consensus 39 ~~~p~~~~l------~~~~~~~i~~~~v~v~~k~~cp~~--~~~~---------------k~~~~-----------~~~~ 84 (535)
+.+|.|..+ +..++.+.+.|....++.++||.. |..+ +.... ....
T Consensus 40 ~~IP~~~~lv~~g~~~~a~~~i~~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~ 119 (457)
T COG0493 40 NDIPEPIGLVREGVDHEAIKLIHKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPG 119 (457)
T ss_pred CcCCCHHHHHhcCCcHHHHHHHHHhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCC
Confidence 446766665 333567888999999999999965 5432 11110 1111
Q ss_pred cceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHH
Q psy14461 85 RFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLI 164 (535)
Q Consensus 85 ~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (535)
...-.+|.|||+||+|+++|..+...++.||++|+.+..+ ++..| +++.+ ..+ .++.++.
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G----Gll~y--GIP~~-------------kl~-k~i~d~~ 179 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG----GLLLY--GIPDF-------------KLP-KDILDRR 179 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc----eeEEe--cCchh-------------hcc-chHHHHH
Confidence 2233678999999999999999999999999999998763 33332 13321 111 1233322
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCc-eecC-CCCC---CceechhhHHhc--
Q psy14461 165 KRFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVER-RCLP-EPRN---SALISADDLFRL-- 237 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs-~p~~-~i~G---~~v~~~~~~~~~-- 237 (535)
.+.|++.|++|+.+... ++.+++....-.||+++||||+ .|+. ++|| ++++.+.+++..
T Consensus 180 -----------i~~l~~~Gv~~~~~~~v---G~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~ 245 (457)
T COG0493 180 -----------LELLERSGVEFKLNVRV---GRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLN 245 (457)
T ss_pred -----------HHHHHHcCeEEEEcceE---CCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHH
Confidence 36788889999887632 3345555444567999999998 5666 8999 578877777632
Q ss_pred ----c-----C----CCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc--Cc-CCccCcHHHHHHHHHhhhcCCeEE-c
Q psy14461 238 ----G-----A----WPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS--RR-LLKHFDQEMVRILLSSLTKAGVSI-Q 299 (535)
Q Consensus 238 ----~-----~----~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~--~~-~l~~~~~~~~~~~~~~l~~~gV~i-~ 299 (535)
. . .+++|+|||||.++++++....++|+ +|+.+++ .. -...++....+...+...++|+.. +
T Consensus 246 ~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~ 325 (457)
T COG0493 246 KEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLP 325 (457)
T ss_pred HHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccc
Confidence 1 1 12899999999999999999999997 8888864 11 112222222344455667788888 8
Q ss_pred ceEEEEEEEeCCCcEE-EEEe---cC-------------CCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCce
Q psy14461 300 CCVIEKVISSFDGMKG-VRGF---HP-------------ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYV 362 (535)
Q Consensus 300 ~~~v~~i~~~~~~~~~-v~~~---~~-------------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i 362 (535)
.....++..+++|++. +.+. .. ..|+++.+++|.|++|+|+.|+.........++..+.+|.+
T Consensus 326 ~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i 405 (457)
T COG0493 326 FVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRI 405 (457)
T ss_pred cCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCce
Confidence 8888888876556553 2221 10 13677899999999999999886553223336778889999
Q ss_pred EcCCCC-CcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461 363 VCNEKD-QTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY 404 (535)
Q Consensus 363 ~vd~~~-~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~ 404 (535)
.+|+.+ +|+.|++||.||+. .+..++.+|+.+||.+|+.|-
T Consensus 406 ~~~~~~~~ts~~~vfa~gD~~-~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 406 KVDENLQQTSIPGVFAGGDAV-RGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred ecccccccccCCCeeeCceec-cchhhhhhHHhhchHHHHhhh
Confidence 999998 99999999999999 668899999999999999875
No 76
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.7e-25 Score=215.20 Aligned_cols=288 Identities=15% Similarity=0.111 Sum_probs=198.6
Q ss_pred eEEEEEeeCCccHHHHHHHHHhhCCCeEE-EEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461 87 AVLYLDRIGDEGILLEEELKRQTNQRRDE-LQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK 165 (535)
Q Consensus 87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~-lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (535)
..++|.|+|+||||-++|++..+.+.+.= +-||-. ++ .....+|-++ .+.+..+.+++....+
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG---GQ----vldT~~IENf---------Isv~~teGpkl~~ale 273 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG---GQ----VLDTMGIENF---------ISVPETEGPKLAAALE 273 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC---Ce----eccccchhhe---------eccccccchHHHHHHH
Confidence 45899999999999999999888775443 334321 11 1110011111 1123345556666555
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCceecC-CCCC------Cc---eechhhH
Q psy14461 166 RFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN------SA---LISADDL 234 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G------~~---v~~~~~~ 234 (535)
.++.+...++....+...++ ... .-.+-..|++.+ -.+.++.+|||||++.+. .+|| ++ +-+++.-
T Consensus 274 ~Hv~~Y~vDimn~qra~~l~--~a~-~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGP 350 (520)
T COG3634 274 AHVKQYDVDVMNLQRASKLE--PAA-VEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP 350 (520)
T ss_pred HHHhhcCchhhhhhhhhcce--ecC-CCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCc
Confidence 44444333332222222221 000 001123566654 679999999999999998 9999 12 2233333
Q ss_pred HhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCC
Q psy14461 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTK-AGVSI-QCCVIEKVISSFD 311 (535)
Q Consensus 235 ~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~ 311 (535)
+ -.+|+|+|||||++|+|+|..|+-.-..||+++- +.+-. |. .+++.++. .++++ ++...++|.++ +
T Consensus 351 L---F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA--D~----VLq~kl~sl~Nv~ii~na~Ttei~Gd-g 420 (520)
T COG3634 351 L---FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA--DA----VLQDKLRSLPNVTIITNAQTTEVKGD-G 420 (520)
T ss_pred c---cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh--HH----HHHHHHhcCCCcEEEecceeeEEecC-C
Confidence 2 2369999999999999999999988889999986 44321 22 33444433 58999 99999999986 3
Q ss_pred CcE-EEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCCCCcHH
Q psy14461 312 GMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNAS 390 (535)
Q Consensus 312 ~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~ 390 (535)
.++ -+.+.+..+|+++.++-+-|++-+|-.||++|| +.. ++++++|.|.||....||+|+|||+|||+....+++.
T Consensus 421 ~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WL--kg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yKQII 497 (520)
T COG3634 421 DKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWL--KGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYKQII 497 (520)
T ss_pred ceecceEEEeccCCceeEEEeeeeEEEEecccChhHh--hch-hhcCcCccEEEecCCCcCCCceeecCcccCCccceEE
Confidence 444 366666678888889999999999999999998 555 8999999999999999999999999999955567788
Q ss_pred HHHHHHHHHHHHHhCC
Q psy14461 391 MAAISARLIIERLYGM 406 (535)
Q Consensus 391 ~A~~~g~~aa~~i~g~ 406 (535)
.|+.+|..|+.+.+..
T Consensus 498 IamG~GA~AaL~AFDy 513 (520)
T COG3634 498 IAMGEGAKASLSAFDY 513 (520)
T ss_pred EEecCcchhhhhhhhh
Confidence 8999999888877653
No 77
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.91 E-value=8.5e-23 Score=234.79 Aligned_cols=269 Identities=13% Similarity=0.043 Sum_probs=182.9
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF 167 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (535)
..+|+|||+||||+++|+.....+.+|+|+|+++.+++. .++. ... ....+..++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~----~~~~---~~~-----------~~g~~~~~~~~~---- 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGS----LLSE---AET-----------IDGKPAADWAAA---- 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCe----eecc---ccc-----------cCCccHHHHHHH----
Confidence 468999999999999999999999999999999876432 2220 000 001111111111
Q ss_pred HHHHHHHHHHHHHhc-CcEEEEeEEE-EecC-CEEEE----------------ce--eEEEcceEEEeeCceecC-CCCC
Q psy14461 168 CIRAKNDSMRELKAL-GIDIVRTAAA-FTNP-HTIKL----------------SN--RSVTGFNFLLAVERRCLP-EPRN 225 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~-gV~~~~g~~~-~~~~-~~v~~----------------~~--~~~~~d~lViATGs~p~~-~i~G 225 (535)
....++.. +|+++.++.. .+.. ..+.. .+ .++.||+||||||+.++. ++||
T Consensus 221 -------~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG 293 (985)
T TIGR01372 221 -------TVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFAN 293 (985)
T ss_pred -------HHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCC
Confidence 12334444 5887765422 2211 11110 01 268999999999999998 9998
Q ss_pred ---CceechhhHHhc----c-CCCCcEEEECCChHHHHHHHHHHhCCC-cEEEEEc-CcCCccCcHHHHHHHHHhhhcCC
Q psy14461 226 ---SALISADDLFRL----G-AWPGKTLVLGGSLMAVEIAATLNFLGV-PVTLVYS-RRLLKHFDQEMVRILLSSLTKAG 295 (535)
Q Consensus 226 ---~~v~~~~~~~~~----~-~~~k~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~g 295 (535)
+++++...+..+ . ..+++|+|||+|++|+|+|..|++.|. .|+++++ +.+. ..+.+.+++.|
T Consensus 294 ~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~--------~~l~~~L~~~G 365 (985)
T TIGR01372 294 NDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS--------PEARAEARELG 365 (985)
T ss_pred CCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh--------HHHHHHHHHcC
Confidence 567766443322 1 246899999999999999999999995 5788876 5432 23556788899
Q ss_pred eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccC--eeecCC--CceEcCCCCCc
Q psy14461 296 VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG--VDIKKK--SYVVCNEKDQT 370 (535)
Q Consensus 296 V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~g--l~~~~~--G~i~vd~~~~T 370 (535)
|++ +++.++++..+ +....|++.. .+|+..++++|.|++++|++||++++ ..++ +..++. +++. .|
T Consensus 366 V~i~~~~~v~~i~g~-~~v~~V~l~~-~~g~~~~i~~D~V~va~G~~Pnt~L~--~~lg~~~~~~~~~~~~~~-----~t 436 (985)
T TIGR01372 366 IEVLTGHVVAATEGG-KRVSGVAVAR-NGGAGQRLEADALAVSGGWTPVVHLF--SQRGGKLAWDAAIAAFLP-----GD 436 (985)
T ss_pred CEEEcCCeEEEEecC-CcEEEEEEEe-cCCceEEEECCEEEEcCCcCchhHHH--HhcCCCeeeccccCceec-----CC
Confidence 999 99999999864 2222455542 13444589999999999999999876 4444 333321 2221 37
Q ss_pred CCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461 371 SVGNIFAVGGIVHGKPNNASMAAISARLIIERLY 404 (535)
Q Consensus 371 ~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~ 404 (535)
+.|+||++||++ +. ..+..|+.+|+.||..|+
T Consensus 437 ~v~gVyaaGD~~-g~-~~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 437 AVQGCILAGAAN-GL-FGLAAALADGAAAGAAAA 468 (985)
T ss_pred CCCCeEEeeccC-Cc-cCHHHHHHHHHHHHHHHH
Confidence 899999999998 54 466679999999999985
No 78
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.87 E-value=1e-20 Score=208.77 Aligned_cols=305 Identities=12% Similarity=0.007 Sum_probs=186.5
Q ss_pred HHhhhcCCcEEEEeC-CCchhhHHHH--------------HHHHHh-----------------c---------CCcceEE
Q psy14461 51 ISRLSYENRILIFTH-AVLREENARA--------------ERYLNA-----------------R---------GDRFAVL 89 (535)
Q Consensus 51 ~~~~i~~~~v~v~~k-~~cp~~~~~~--------------k~~~~~-----------------~---------~~~~~~~ 89 (535)
+..+.++||....+. +.|| .|..+ |+...+ . .....-.
T Consensus 306 l~ii~~~NP~p~~~G~RVCp-~CE~aC~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgK 384 (1028)
T PRK06567 306 LAIIVIDNPMVAATGHRICN-DCSKACIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNY 384 (1028)
T ss_pred HHHHHHhCCChHhhCCccCc-chHHHhcCCCCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCC
Confidence 344678899988887 9999 79875 332211 0 0112335
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc--------cccccccccccchhhccc---ccccccccccCHH
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK--------KRRLYYPVAMSDLELEQD---STSALNVTIRNWN 158 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~--------~~l~~~~~~i~~~~~~~~---~~~~~~~~~~~~~ 158 (535)
+|+|||+||||+.+|..+...+++|||||+.+..+... ... +.+. +. .+.+ |........++|.
T Consensus 385 KVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~-~~~~-L~---er~p~~~GG~~~yGIp~R~~ 459 (1028)
T PRK06567 385 NILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHE-YKNL-LS---ERMPRGFGGVAEYGITVRWD 459 (1028)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhh-hccc-hh---hhccccCCcccccCccccch
Confidence 89999999999999999988999999999864321100 000 0000 00 0000 0000001112332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCc-eecC-CCCC---Cceech
Q psy14461 159 AATKLIKRFCIRAKNDSMRELKA-LGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVER-RCLP-EPRN---SALISA 231 (535)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~-~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs-~p~~-~i~G---~~v~~~ 231 (535)
+ ..++. ....++. .+++++.|.. -+.++++++ ....||+|+||||+ +|+. +||| .+++++
T Consensus 460 k------~~l~~----i~~il~~g~~v~~~~gv~---lG~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA 526 (1028)
T PRK06567 460 K------NNLDI----LRLILERNNNFKYYDGVA---LDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTA 526 (1028)
T ss_pred H------HHHHH----HHHHHhcCCceEEECCeE---ECccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEH
Confidence 1 11111 1122222 3466555653 223344444 45789999999999 6888 9999 678888
Q ss_pred hhHHhcc--------------CCCCcEEEECCChHHHHHHHHHHh-----------------------------------
Q psy14461 232 DDLFRLG--------------AWPGKTLVLGGSLMAVEIAATLNF----------------------------------- 262 (535)
Q Consensus 232 ~~~~~~~--------------~~~k~vvViGgG~~g~e~A~~l~~----------------------------------- 262 (535)
.+++... ..+++|+|||||++|+|+|....+
T Consensus 527 ~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~ 606 (1028)
T PRK06567 527 SDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKL 606 (1028)
T ss_pred HHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHh
Confidence 8865431 135799999999999999984332
Q ss_pred ----------------CCCcEEEEEc-C-cCCccC---cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEe
Q psy14461 263 ----------------LGVPVTLVYS-R-RLLKHF---DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGF 319 (535)
Q Consensus 263 ----------------~g~~Vtlv~~-~-~~l~~~---~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~ 319 (535)
.|. |++++| . .-+|.. .+++.. ..++||.+ .+..+.+|..+++++++ +++.
T Consensus 607 ~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~~~eEv~~-----A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~ 680 (1028)
T PRK06567 607 FKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKLNHEELIY-----ALALGVDFKENMQPLRINVDKYGHVESVEFE 680 (1028)
T ss_pred hcchhccchhhhhhccCCc-eEEEecCChhhCCCCCCCHHHHHH-----HHHcCcEEEecCCcEEEEecCCCeEEEEEEE
Confidence 222 888888 2 334432 333322 23569999 99999999765445543 3332
Q ss_pred cC------------CCC-------------CceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCC
Q psy14461 320 HP------------ESK-------------EPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGN 374 (535)
Q Consensus 320 ~~------------~~G-------------~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~ 374 (535)
.. ..+ ++.+++||.||+|+|..||+..+. .+..+-++.++
T Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~---------------~~~s~~~d~~~ 745 (1028)
T PRK06567 681 NRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE---------------DKYSYFGDCNP 745 (1028)
T ss_pred EEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccccc---------------cccccccCCCC
Confidence 10 012 557899999999999999997630 01123345566
Q ss_pred EEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461 375 IFAVGGIVHGKPNNASMAAISARLIIERLY 404 (535)
Q Consensus 375 IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~ 404 (535)
+|+. .+..|+.+|+.++.+|.
T Consensus 746 ~f~G---------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 746 KYSG---------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred cccc---------HHHHHHHHHHhHHHHHH
Confidence 6664 56789999999999994
No 79
>KOG1346|consensus
Probab=99.87 E-value=7e-22 Score=194.15 Aligned_cols=312 Identities=16% Similarity=0.140 Sum_probs=212.6
Q ss_pred EEEEeeCCccHHHHHH--HHHhhCCCeEEEEecCCcccccccccc----cccccccchhhccccccc--------ccccc
Q psy14461 89 LYLDRIGDEGILLEEE--LKRQTNQRRDELQERGSHLSFRKKRRL----YYPVAMSDLELEQDSTSA--------LNVTI 154 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~a--l~~~~~~~~V~lie~~~~~~~~~~~l~----~~~~~i~~~~~~~~~~~~--------~~~~~ 154 (535)
+...|||+|.+..+++ ++....+..|.+|..++.++|.+..|. +|+-.-+....++..+.- .+...
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ff 258 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFF 258 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcce
Confidence 4557899988866654 455567788999999999888876432 221000000001111000 00001
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEEce-eEEEcceEEEeeCceecC-C-CCC---
Q psy14461 155 RNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKLSN-RSVTGFNFLLAVERRCLP-E-PRN--- 225 (535)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~~~-~~~~~d~lViATGs~p~~-~-i~G--- 225 (535)
++.+++ .....-||-+..|. ++.++ ++.|.+++ .++.||+++||||.+|+. + +..
T Consensus 259 vspeDL----------------p~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~ 322 (659)
T KOG1346|consen 259 VSPEDL----------------PKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASE 322 (659)
T ss_pred eChhHC----------------cccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCH
Confidence 111110 11233488888886 33333 55677765 899999999999999997 4 332
Q ss_pred ------CceechhhHHhccC---CCCcEEEECCChHHHHHHHHHHhC----CCcEEEEEc-CcCC-ccCcHHHHHHHHHh
Q psy14461 226 ------SALISADDLFRLGA---WPGKTLVLGGSLMAVEIAATLNFL----GVPVTLVYS-RRLL-KHFDQEMVRILLSS 290 (535)
Q Consensus 226 ------~~v~~~~~~~~~~~---~~k~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~-~~~l-~~~~~~~~~~~~~~ 290 (535)
..+....|+.++++ ..++|.|||+|++|.|+|..|.+. |.+|+.+-. ...+ .-+++.+++.-.+.
T Consensus 323 evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ek 402 (659)
T KOG1346|consen 323 EVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEK 402 (659)
T ss_pred HhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHH
Confidence 23456778776643 247999999999999999999765 678888766 4333 45677788888899
Q ss_pred hhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCC-CceEcCCCC
Q psy14461 291 LTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKK-SYVVCNEKD 368 (535)
Q Consensus 291 l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~-G~i~vd~~~ 368 (535)
+++.||.+ .+..|.++... .+++.+.+ .||. ++..|+|++|+|-.||+++. +..|+++|++ |.+.||..+
T Consensus 403 ir~~GV~V~pna~v~sv~~~-~~nl~lkL---~dG~--~l~tD~vVvavG~ePN~ela--~~sgLeiD~~lGGfrvnaeL 474 (659)
T KOG1346|consen 403 IRKGGVDVRPNAKVESVRKC-CKNLVLKL---SDGS--ELRTDLVVVAVGEEPNSELA--EASGLEIDEKLGGFRVNAEL 474 (659)
T ss_pred HHhcCceeccchhhhhhhhh-ccceEEEe---cCCC--eeeeeeEEEEecCCCchhhc--ccccceeecccCcEEeehee
Confidence 99999999 99999998766 35667777 4898 89999999999999999987 7788998874 778999888
Q ss_pred CcCCCCEEEeCCcCC------CCCCcHH--HHHHHHHHHHHHHhCCCCCCCCCCCCcEEEEcCCcee
Q psy14461 369 QTSVGNIFAVGGIVH------GKPNNAS--MAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFG 427 (535)
Q Consensus 369 ~T~~~~IyA~GD~~~------~~~~~~~--~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a 427 (535)
+.. .|||++||++. |.-...| .|.-.||.|++||.|... ++..+.+.|... +|+++
T Consensus 475 ~ar-~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAak-py~hqsmFWsdl-gP~ig 538 (659)
T KOG1346|consen 475 KAR-ENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAK-PYKHQSMFWSDL-GPEIG 538 (659)
T ss_pred ecc-cceeeecchhhhhcccccceeccccccceeeceecccccccccC-Cccccceeeecc-Ccccc
Confidence 754 79999999874 1111222 488889999999998543 333333444433 34443
No 80
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.82 E-value=2.8e-18 Score=181.64 Aligned_cols=285 Identities=10% Similarity=0.017 Sum_probs=170.7
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccccccc-------------------ccc---cccchhhcccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLY-------------------YPV---AMSDLELEQDS 146 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~-------------------~~~---~i~~~~~~~~~ 146 (535)
.+|+|||+|++|+.+|..+...+.+|+|||+++.+++...-.+. |.. .++...-.+..
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~d 90 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYRD 90 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCCC
Confidence 56799999999999999888889999999999876533211000 000 00000000111
Q ss_pred ccccc---------ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcE--EEEe-EEEEec--C--CEEEEce-----eE
Q psy14461 147 TSALN---------VTIRNWNAATKLIKRFCIRAKNDSMRELKALGID--IVRT-AAAFTN--P--HTIKLSN-----RS 205 (535)
Q Consensus 147 ~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g-~~~~~~--~--~~v~~~~-----~~ 205 (535)
+.... ...+...++.++.+ ...+..+++ +..+ +|..++ . .+|++.+ .+
T Consensus 91 fp~~~~~~~~~~~~~~fp~~~ev~~YL~-----------~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~ 159 (461)
T PLN02172 91 FPFVPRFDDESRDSRRYPSHREVLAYLQ-----------DFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKD 159 (461)
T ss_pred CCCCcccccccCcCCCCCCHHHHHHHHH-----------HHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEE
Confidence 11000 11122333444443 444455655 3333 233322 2 2444431 24
Q ss_pred EEcceEEEeeC--ceecC-CCCC-C----ceechhhHHhcc-CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461 206 VTGFNFLLAVE--RRCLP-EPRN-S----ALISADDLFRLG-AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL 275 (535)
Q Consensus 206 ~~~d~lViATG--s~p~~-~i~G-~----~v~~~~~~~~~~-~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~ 275 (535)
..||+||+||| +.|+. ++|| + ..+++.++.... ..+|+|+|||+|.+|+|+|..|++.+.+|++++| ..+
T Consensus 160 ~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~ 239 (461)
T PLN02172 160 EIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASES 239 (461)
T ss_pred EEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccc
Confidence 67999999999 67887 8888 2 233444443222 2468999999999999999999999999999998 533
Q ss_pred CccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccC-
Q psy14461 276 LKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG- 353 (535)
Q Consensus 276 l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~g- 353 (535)
... ..+......+ .+..|..+.. ++ .|+++ ||+ .+++|.||+|||++|+.++| +..+
T Consensus 240 ~~~----------~~~~~~~~~v~~~~~I~~~~~--~g--~V~f~---DG~--~~~~D~Ii~~TGy~~~~pfL--~~~~~ 298 (461)
T PLN02172 240 DTY----------EKLPVPQNNLWMHSEIDTAHE--DG--SIVFK---NGK--VVYADTIVHCTGYKYHFPFL--ETNGY 298 (461)
T ss_pred ccc----------ccCcCCCCceEECCcccceec--CC--eEEEC---CCC--CccCCEEEECCcCCcccccc--Ccccc
Confidence 210 1111122344 5555665543 23 36674 787 68899999999999999987 3322
Q ss_pred eeecCCCceEcCCC-CCcC-CCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy14461 354 VDIKKKSYVVCNEK-DQTS-VGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ 407 (535)
Q Consensus 354 l~~~~~G~i~vd~~-~~T~-~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~ 407 (535)
+..+++.-...-++ +-.. .|+++.+|=.. .....+.+..|++.+|+-+.|+.
T Consensus 299 i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~--~~~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 299 MRIDENRVEPLYKHVFPPALAPGLSFIGLPA--MGIQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred eeeCCCcchhhHHhhcCCCCCCcEEEEeccc--cccCchhHHHHHHHHHHHHcCCC
Confidence 33332210011111 1223 48999999543 23345678999999999998864
No 81
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=99.78 E-value=8.7e-19 Score=149.24 Aligned_cols=95 Identities=29% Similarity=0.388 Sum_probs=83.2
Q ss_pred CcEEEEcCCceeeecCCHHHHHHhcCCCCEEEEEEecCCcccccCCCCCcchhhhhhccCCcccccccccCcceEEEEEE
Q psy14461 416 LPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVC 495 (535)
Q Consensus 416 ~p~~~~~~~~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~ 495 (535)
+|+++|++|++|+||+||+||++.+. ++++....+....+.. .. +++.||+||++
T Consensus 1 vP~~vft~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~-~~----------------------~~~~g~~Kli~ 55 (110)
T PF02852_consen 1 VPTVVFTDPEIASVGLTEEEARKQGI--DYEVVTVPFKSNDRAR-YY----------------------PETEGFVKLIF 55 (110)
T ss_dssp CEEEEESSSEEEEEES-HHHHHHHTS--GEEEEEEEEGGEHHHH-HT----------------------TTTEEEEEEEE
T ss_pred CCEEEECCCceEEEccCHHHHHhccC--ceeeeeecccccchhc-cc----------------------CCcceeeEEEE
Confidence 69999999999999999999999955 6888888887766654 11 14789999999
Q ss_pred ECCCCeEEEEEEEcCchhHHHHHHHHHHHCCCCHHHHcCC
Q psy14461 496 LKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535 (535)
Q Consensus 496 ~~~~~~ilGa~~~G~~a~e~i~~~~~~i~~~~t~~~l~~~ 535 (535)
|++|++|||+|++|++|.|+|+.++++|++++|+++|.++
T Consensus 56 d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~ 95 (110)
T PF02852_consen 56 DKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADD 95 (110)
T ss_dssp ETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTS
T ss_pred EeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCC
Confidence 9999999999999999999999999999999999998753
No 82
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.71 E-value=2.1e-15 Score=162.02 Aligned_cols=300 Identities=12% Similarity=0.058 Sum_probs=155.1
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccc--------cccccc---cccchhhccccccc--cccccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKR--------RLYYPV---AMSDLELEQDSTSA--LNVTIR 155 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~--------l~~~~~---~i~~~~~~~~~~~~--~~~~~~ 155 (535)
.+|+|||+|++|++++-..+..+.++++||+++.+++...- .+.|+. .++.+.-.+.++.. -.+..+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 36899999999999998888889999999999987544210 001100 01111111222211 112244
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEec------CCEEEEce----eEEEcceEEEeeCc--eecCC-
Q psy14461 156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTN------PHTIKLSN----RSVTGFNFLLAVER--RCLPE- 222 (535)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~------~~~v~~~~----~~~~~d~lViATGs--~p~~~- 222 (535)
...++.++.+.+.+.+... . .-+.+-++.. ++..+ ..+|+++. .+..||+||+|||- .|..|
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~--~-~I~fnt~V~~--v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLR--K-HIRFNTEVVS--VERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPE 156 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGG--G-GEETSEEEEE--EEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB--
T ss_pred CHHHHHHHHHHHHhhhCCc--c-eEEEccEEeE--eeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCCh
Confidence 5677888887776654321 0 0111222221 11111 13455532 45679999999995 56552
Q ss_pred --CCC-----CceechhhHHhcc-CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc--CcCCccCc------------
Q psy14461 223 --PRN-----SALISADDLFRLG-AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS--RRLLKHFD------------ 280 (535)
Q Consensus 223 --i~G-----~~v~~~~~~~~~~-~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~--~~~l~~~~------------ 280 (535)
+|| ..++++.++.... -.+|+|+|||+|.+|+++|..|++...+|++..| ..++|...
T Consensus 157 ~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~ 236 (531)
T PF00743_consen 157 PSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFST 236 (531)
T ss_dssp ---CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------------
T ss_pred hhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccccccccc
Confidence 788 3477788776543 3479999999999999999999999999999887 33333211
Q ss_pred -----------HHHHHHH-HHhhh------cCCeE------------------------E-cceEEEEEEEeCCCcEEEE
Q psy14461 281 -----------QEMVRIL-LSSLT------KAGVS------------------------I-QCCVIEKVISSFDGMKGVR 317 (535)
Q Consensus 281 -----------~~~~~~~-~~~l~------~~gV~------------------------i-~~~~v~~i~~~~~~~~~v~ 317 (535)
..+.+.+ .+.+. ..|+. + ....|+++.+ -.|.
T Consensus 237 R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~-----~~v~ 311 (531)
T PF00743_consen 237 RFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTE-----NSVI 311 (531)
T ss_dssp --------------------------------------------------------------EE-EEEE-S-----SEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccc
Confidence 0011111 01110 01111 0 1111222221 1245
Q ss_pred EecCCCCCceE-EEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCC---CcCCCCEEEeCCcCCCCCCcHHHHH
Q psy14461 318 GFHPESKEPFA-DVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKD---QTSVGNIFAVGGIVHGKPNNASMAA 393 (535)
Q Consensus 318 ~~~~~~G~~~~-~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~---~T~~~~IyA~GD~~~~~~~~~~~A~ 393 (535)
+ .||+ + .++|.||+|||++...++|. ..-+... ++.+..-.++ .-..|.+..+|=+. ......+.+.
T Consensus 312 F---~DGs--~~e~vD~II~~TGY~~~fpFL~--~~~~~~~-~~~~~LYk~vfp~~~~~ptLafIG~~~-~~g~~fp~~E 382 (531)
T PF00743_consen 312 F---EDGS--TEEDVDVIIFCTGYKFSFPFLD--ESLIKVD-DNRVRLYKHVFPPNLDHPTLAFIGLVQ-PFGSIFPIFE 382 (531)
T ss_dssp E---TTSE--EEEE-SEEEE---EE---TTB---TTTT-S--SSSSSEETTTEETETTSTTEEESS-SB-SSS-HHHHHH
T ss_pred c---cccc--cccccccccccccccccccccc--ccccccc-ccccccccccccccccccccccccccc-cccccccccc
Confidence 5 3776 4 46999999999999988873 3223322 2333333332 12458999999775 3223556799
Q ss_pred HHHHHHHHHHhCCC
Q psy14461 394 ISARLIIERLYGMQ 407 (535)
Q Consensus 394 ~~g~~aa~~i~g~~ 407 (535)
.|++.+|+-+.|..
T Consensus 383 lQArw~a~v~sG~~ 396 (531)
T PF00743_consen 383 LQARWAARVFSGRV 396 (531)
T ss_dssp HHHHHHHHHHTTSS
T ss_pred cccccccccccccc
Confidence 99999999998864
No 83
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.70 E-value=5.3e-17 Score=153.45 Aligned_cols=174 Identities=18% Similarity=0.202 Sum_probs=115.5
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHHH
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCI 169 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (535)
+|+|||+|++|+.+|......+.+|+|+|+.+..++....++.. .. ............
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~---~~-------------------~~~~~~~~~~~~ 58 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSP---LL-------------------VEIAPHRHEFLP 58 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHH---HH-------------------HHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccccccc---cc-------------------cccccccccccc
Confidence 58999999999999999999999999999988654433322221 00 000000000000
Q ss_pred HHH-HHHHHHHHhcCcEEEE-eEEEEe--cCCE-------EEE----ceeEEEcceEEEeeCceecC-CCCC-C------
Q psy14461 170 RAK-NDSMRELKALGIDIVR-TAAAFT--NPHT-------IKL----SNRSVTGFNFLLAVERRCLP-EPRN-S------ 226 (535)
Q Consensus 170 ~~~-~~~~~~~~~~gV~~~~-g~~~~~--~~~~-------v~~----~~~~~~~d~lViATGs~p~~-~i~G-~------ 226 (535)
.. ..+.+.++..++++.. ..+..+ ..+. +.. +..++.||+||||||+.|.. ++|| +
T Consensus 59 -~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~ 137 (201)
T PF07992_consen 59 -ARLFKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLR 137 (201)
T ss_dssp -HHHGHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTT
T ss_pred -ccccccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccc
Confidence 00 0223344556777732 333222 2332 211 12689999999999999988 8888 2
Q ss_pred ceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCccCcHHHHHHHHHhhhcCCeEEcceEEEEE
Q psy14461 227 ALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKV 306 (535)
Q Consensus 227 ~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i 306 (535)
.+.++.+++.....+++++|||
T Consensus 138 ~~~~~~~~~~~~~~~~~v~VvG---------------------------------------------------------- 159 (201)
T PF07992_consen 138 GVDDAQRFLELLESPKRVAVVG---------------------------------------------------------- 159 (201)
T ss_dssp SEEHHHHHHTHSSTTSEEEEES----------------------------------------------------------
T ss_pred cccccccccccccccccccccc----------------------------------------------------------
Confidence 3556677776666677999999
Q ss_pred EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCCCCCcCCCCEEEeCCcC
Q psy14461 307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV 382 (535)
Q Consensus 307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~ 382 (535)
+.+|. +..+++++++|++.||+++||+.|||||+|||+
T Consensus 160 -------------------------------------~~~l~-~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a 197 (201)
T PF07992_consen 160 -------------------------------------TEFLA-EKLGVELDENGFIKVDENLQTSVPGIYAAGDCA 197 (201)
T ss_dssp -------------------------------------TTTST-HHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGB
T ss_pred -------------------------------------ccccc-ccccccccccccccccccccccccccccccccc
Confidence 34443 566788889999999999999999999999998
No 84
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.65 E-value=1.2e-14 Score=148.00 Aligned_cols=250 Identities=16% Similarity=0.094 Sum_probs=131.9
Q ss_pred eEEEEEeeCCccHHHHHHHHHh-hCCCeEEEEecCCcccccccccc-ccccc---ccchhhcccccccccccccCHHHHH
Q psy14461 87 AVLYLDRIGDEGILLEEELKRQ-TNQRRDELQERGSHLSFRKKRRL-YYPVA---MSDLELEQDSTSALNVTIRNWNAAT 161 (535)
Q Consensus 87 ~~~~v~iiG~G~aG~~~al~~~-~~~~~V~lie~~~~~~~~~~~l~-~~~~~---i~~~~~~~~~~~~~~~~~~~~~~l~ 161 (535)
+.+|++.||.||++++-|.... ....++..+|+.+...|.++.++ ..... +.+...-.++ ...++|....
T Consensus 1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P-----~s~~sflnYL 75 (341)
T PF13434_consen 1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDP-----TSPFSFLNYL 75 (341)
T ss_dssp -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-T-----TSTTSHHHHH
T ss_pred CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCC-----CCcccHHHHH
Confidence 3688999999999987665333 23689999999998777765432 11111 1111111111 1123444333
Q ss_pred HHHHHHHHHHH-----------HHHHHHHH-hcCcEEEEe-EEEEe---c-C----CEEEEc-----eeEEEcceEEEee
Q psy14461 162 KLIKRFCIRAK-----------NDSMRELK-ALGIDIVRT-AAAFT---N-P----HTIKLS-----NRSVTGFNFLLAV 215 (535)
Q Consensus 162 ~~~~~~~~~~~-----------~~~~~~~~-~~gV~~~~g-~~~~~---~-~----~~v~~~-----~~~~~~d~lViAT 215 (535)
....+..+-+. ..+..+.. ...-.+..+ +|..+ . . ..|.+. ...+.+++|||||
T Consensus 76 ~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~ 155 (341)
T PF13434_consen 76 HEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLAT 155 (341)
T ss_dssp HHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE--
T ss_pred HHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECc
Confidence 33322222110 12222222 223223333 23222 1 2 356662 3789999999999
Q ss_pred CceecC-C----CCC-CceechhhHHhcc---CCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEEc-CcCCcc-----
Q psy14461 216 ERRCLP-E----PRN-SALISADDLFRLG---AWPGKTLVLGGSLMAVEIAATLNFLGV--PVTLVYS-RRLLKH----- 278 (535)
Q Consensus 216 Gs~p~~-~----i~G-~~v~~~~~~~~~~---~~~k~vvViGgG~~g~e~A~~l~~~g~--~Vtlv~~-~~~l~~----- 278 (535)
|..|.. + .++ +.++++.+++... ..+++|+|||||.+|.|++..|.+.+. +|+++.| ..+.+.
T Consensus 156 G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f 235 (341)
T PF13434_consen 156 GGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPF 235 (341)
T ss_dssp --EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CC
T ss_pred CCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccc
Confidence 999876 2 233 6688888877542 456899999999999999999998864 8999999 655442
Q ss_pred ----CcHH-------------------------------HHHHHHHhh------hcCCeEE-cceEEEEEEEeCCCcEEE
Q psy14461 279 ----FDQE-------------------------------MVRILLSSL------TKAGVSI-QCCVIEKVISSFDGMKGV 316 (535)
Q Consensus 279 ----~~~~-------------------------------~~~~~~~~l------~~~gV~i-~~~~v~~i~~~~~~~~~v 316 (535)
++++ +.+.+.+.+ .+..+.+ .+++|++++..+++.+.+
T Consensus 236 ~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l 315 (341)
T PF13434_consen 236 VNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRL 315 (341)
T ss_dssp HHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEE
T ss_pred hhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEE
Confidence 2222 222222221 2335789 999999999885468899
Q ss_pred EEecCCCCCceEEEcCEEEEccCCC
Q psy14461 317 RGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 317 ~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
++.+...|+..++++|.||+|||++
T Consensus 316 ~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 316 TLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEETTT--EEEEEESEEEE---EE
T ss_pred EEEECCCCCeEEEecCEEEEcCCcc
Confidence 9887667888899999999999975
No 85
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.65 E-value=1.5e-14 Score=145.93 Aligned_cols=196 Identities=14% Similarity=0.075 Sum_probs=137.0
Q ss_pred eEEEcceEEEeeCceecC--CCC--C----CceechhhHHhcc----------------CCCCcEEEE---CCCh-----
Q psy14461 204 RSVTGFNFLLAVERRCLP--EPR--N----SALISADDLFRLG----------------AWPGKTLVL---GGSL----- 251 (535)
Q Consensus 204 ~~~~~d~lViATGs~p~~--~i~--G----~~v~~~~~~~~~~----------------~~~k~vvVi---GgG~----- 251 (535)
.++..-.+|+|||-.+.. ..+ | ++++|.-++.++- +.||+|+.| |+-+
T Consensus 297 ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n 376 (622)
T COG1148 297 VELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGN 376 (622)
T ss_pred EEEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCC
Confidence 367888999999987765 121 2 6788877766542 357888875 5543
Q ss_pred ---------HHHHHHHHHHhC--CCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEEe
Q psy14461 252 ---------MAVEIAATLNFL--GVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGF 319 (535)
Q Consensus 252 ---------~g~e~A~~l~~~--g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~~ 319 (535)
.++.-|...+++ ..+|++++. -+-...+-+++..+.+ ++.||++...++.+|...+++.+.|..+
T Consensus 377 ~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG~~yEefY~~~Q---~~~gV~fIRGrvaei~e~p~~~l~V~~E 453 (622)
T COG1148 377 PYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFGKDYEEFYVRSQ---EDYGVRFIRGRVAEIAEFPKKKLIVRVE 453 (622)
T ss_pred hhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccCccHHHHHHhhh---hhhchhhhcCChHHheeCCCCeeEEEEE
Confidence 122333344433 468999987 4433333333333333 3669999555777877665666788888
Q ss_pred cCCCCCceEEEcCEEEEccCCCCCCCCCCc-cccCeeecCCCceEcC-CCC---CcCCCCEEEeCCcCCCCCCcHHHHHH
Q psy14461 320 HPESKEPFADVFKTVVNAMEKKFDFAALNL-HHIGVDIKKKSYVVCN-EKD---QTSVGNIFAVGGIVHGKPNNASMAAI 394 (535)
Q Consensus 320 ~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l-~~~gl~~~~~G~i~vd-~~~---~T~~~~IyA~GD~~~~~~~~~~~A~~ 394 (535)
+|..|+..++++|+|++++|..|....-.+ +.+|++.+++||++-. +.+ +|+.+|||.+|-+. +|+-+..++.
T Consensus 454 dTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aq--gPkdI~~sia 531 (622)
T COG1148 454 DTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQ--GPKDIADSIA 531 (622)
T ss_pred eccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeeccc--CCccHHHHHH
Confidence 888898889999999999999986543111 4568899999999876 444 57999999999876 7999999988
Q ss_pred HHHHHHHHHh
Q psy14461 395 SARLIIERLY 404 (535)
Q Consensus 395 ~g~~aa~~i~ 404 (535)
||..||....
T Consensus 532 qa~aAA~kA~ 541 (622)
T COG1148 532 QAKAAAAKAA 541 (622)
T ss_pred HhHHHHHHHH
Confidence 8888776653
No 86
>KOG2755|consensus
Probab=99.65 E-value=2.6e-15 Score=140.25 Aligned_cols=257 Identities=15% Similarity=0.102 Sum_probs=146.6
Q ss_pred EEeeCCccHHHHHHHH--HhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461 91 LDRIGDEGILLEEELK--RQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC 168 (535)
Q Consensus 91 v~iiG~G~aG~~~al~--~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (535)
.+|+|||-||+.||-+ ...+..+|+|+..++.+--. .-|.+ ++.... ++|. ++.-.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksv---tn~~~--i~~yle-----------kfdv------~eq~~ 59 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV---TNYQK--IGQYLE-----------KFDV------KEQNC 59 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH---hhHHH--HHHHHH-----------hcCc------cccch
Confidence 4789999999999854 44567889999988743110 00000 111000 0000 00011
Q ss_pred HHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCceecCCCCC--Cc---eechhhHHhcc---C
Q psy14461 169 IRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRCLPEPRN--SA---LISADDLFRLG---A 239 (535)
Q Consensus 169 ~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p~~~i~G--~~---v~~~~~~~~~~---~ 239 (535)
.++....+..+.. +.-.. ...+-+.+.+ .++.|++|++|||++|..-.+| .. ..+.+....++ .
T Consensus 60 ~elg~~f~~~~~~--v~~~~-----s~ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~ 132 (334)
T KOG2755|consen 60 HELGPDFRRFLND--VVTWD-----SSEHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLV 132 (334)
T ss_pred hhhcccHHHHHHh--hhhhc-----cccceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHh
Confidence 1121122222222 11111 2345555543 7899999999999999872222 22 22333333222 4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-cCcHHHHHHHHHhhhcC------------CeEE-c-----
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-HFDQEMVRILLSSLTKA------------GVSI-Q----- 299 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~~~~~l~~~------------gV~i-~----- 299 (535)
..|+|.|+|.|-+++|++..+. +.+|++... +.+.. .+++.+.+.+...|... .++. +
T Consensus 133 kaK~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n 210 (334)
T KOG2755|consen 133 KAKIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEEN 210 (334)
T ss_pred hcceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCccccc
Confidence 5789999999999999998885 568998887 66553 34555444443333100 0000 0
Q ss_pred -------------------------------ceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCC
Q psy14461 300 -------------------------------CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALN 348 (535)
Q Consensus 300 -------------------------------~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~ 348 (535)
+.-+..-.+ .....++..++..|....+.+|.++.|+|..||++++
T Consensus 211 ~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~--~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~- 287 (334)
T KOG2755|consen 211 NVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDT--SDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWA- 287 (334)
T ss_pred CcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccc--hhhcccccccccccccceeeeeEEEeccccCcCceEE-
Confidence 000000000 0111122111123333368899999999999999965
Q ss_pred ccccCeeecCCCceEcCCCCCcCCCCEEEeCCcC
Q psy14461 349 LHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIV 382 (535)
Q Consensus 349 l~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~ 382 (535)
-...+...++|.+.||+.|+|+.|++||+||+.
T Consensus 288 -~~~~lq~~edggikvdd~m~tslpdvFa~gDvc 320 (334)
T KOG2755|consen 288 -MNKMLQITEDGGIKVDDAMETSLPDVFAAGDVC 320 (334)
T ss_pred -ecChhhhccccCeeehhhccccccceeeeccee
Confidence 333466778899999999999999999999987
No 87
>KOG3851|consensus
Probab=99.63 E-value=9.3e-15 Score=140.13 Aligned_cols=279 Identities=12% Similarity=0.139 Sum_probs=167.7
Q ss_pred EEEEEeeCCccHHHHHH--HHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461 88 VLYLDRIGDEGILLEEE--LKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK 165 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~a--l~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (535)
..++.|+|||.+|+..| +.+..+..+|.++|..+...|++.-.+.. .++.....+......+-+....|
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvG-gGl~~l~~srr~~a~liP~~a~w-------- 109 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVG-GGLKSLDSSRRKQASLIPKGATW-------- 109 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEec-cchhhhhhccCcccccccCCcHH--------
Confidence 46789999887666655 56666778999999998777765422111 00110000000000000001111
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEce-eEEEcceEEEeeCceecC-CCCC-------Cceec---h--
Q psy14461 166 RFCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-RSVTGFNFLLAVERRCLP-EPRN-------SALIS---A-- 231 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~-~~~~~d~lViATGs~p~~-~i~G-------~~v~~---~-- 231 (535)
+.+..++.+ .+.++|.+++ ++++||++|||+|...+. .|+| +++.+ .
T Consensus 110 ---------i~ekv~~f~----------P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpky 170 (446)
T KOG3851|consen 110 ---------IKEKVKEFN----------PDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKY 170 (446)
T ss_pred ---------HHHHHHhcC----------CCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHH
Confidence 111111111 5667777765 899999999999998887 7888 22221 1
Q ss_pred -h----hHHhcc------CCCCcEE-EECCChHHHHHHH-HHHhCCC--cEEEEEc---CcCCccCcHHHHHHHHHhhhc
Q psy14461 232 -D----DLFRLG------AWPGKTL-VLGGSLMAVEIAA-TLNFLGV--PVTLVYS---RRLLKHFDQEMVRILLSSLTK 293 (535)
Q Consensus 232 -~----~~~~~~------~~~k~vv-ViGgG~~g~e~A~-~l~~~g~--~Vtlv~~---~~~l~~~~~~~~~~~~~~l~~ 293 (535)
+ .+.+.+ ..|...+ .-|+-.-.+-++. .++++|. ++.++.. +.++. -+...+.+++..++
T Consensus 171 vdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg--Vk~Y~~AL~k~~~~ 248 (446)
T KOG3851|consen 171 VDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG--VKHYADALEKVIQE 248 (446)
T ss_pred HHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec--HHHHHHHHHHHHHh
Confidence 1 111111 1222222 2355555555554 5666674 5666654 33332 25577888898999
Q ss_pred CCeEE-cceEEEEEEEeCCCcEEEEEecCC-CCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCC-CCC-
Q psy14461 294 AGVSI-QCCVIEKVISSFDGMKGVRGFHPE-SKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE-KDQ- 369 (535)
Q Consensus 294 ~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~-~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~- 369 (535)
++|++ ....+.++..+ ++. ..+++.+ -|..++++++++-+....++.... ..+.+ .|+.||+.||. .+|
T Consensus 249 rni~vn~krnLiEV~~~--~~~-AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l---~~s~~-adktGfvdVD~~TlQs 321 (446)
T KOG3851|consen 249 RNITVNYKRNLIEVRTN--DRK-AVFENLDKPGVTEEIEYSLLHVTPPMSTPEVL---ANSDL-ADKTGFVDVDQSTLQS 321 (446)
T ss_pred cceEeeeccceEEEecc--chh-hHHHhcCCCCceeEEeeeeeeccCCCCChhhh---hcCcc-cCcccceecChhhhcc
Confidence 99999 99999998764 222 2233222 388889999999887766655432 44444 47789999995 555
Q ss_pred cCCCCEEEeCCcCCCCCC--cHHHHHHHHHHHHHHHh
Q psy14461 370 TSVGNIFAVGGIVHGKPN--NASMAAISARLIIERLY 404 (535)
Q Consensus 370 T~~~~IyA~GD~~~~~~~--~~~~A~~~g~~aa~~i~ 404 (535)
+..||||++|||. +.|. .+..+..|..++-+|+.
T Consensus 322 ~kypNVFgiGDc~-n~PnsKTaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 322 KKYPNVFGIGDCM-NLPNSKTAAAVAAQSPVVDKNLT 357 (446)
T ss_pred ccCCCceeecccc-CCCchhhHHHHHhcCchhhhhHH
Confidence 5899999999999 5554 44445677788888875
No 88
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.62 E-value=9.3e-14 Score=138.44 Aligned_cols=203 Identities=17% Similarity=0.115 Sum_probs=144.0
Q ss_pred eEEEcceEEEeeCceecC-C----CCCCceechhhHHhcc-C--CCCcEEEECCChHHHHHHHHHHhC----CCcEEEEE
Q psy14461 204 RSVTGFNFLLAVERRCLP-E----PRNSALISADDLFRLG-A--WPGKTLVLGGSLMAVEIAATLNFL----GVPVTLVY 271 (535)
Q Consensus 204 ~~~~~d~lViATGs~p~~-~----i~G~~v~~~~~~~~~~-~--~~k~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~ 271 (535)
.++.+++|||++|.+|.. + ++++.++++.+++.-. + ..++|.|||+|.+|.|+-..|... ..++.++.
T Consensus 142 ~~y~ar~lVlg~G~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~wit 221 (436)
T COG3486 142 TVYRARNLVLGVGTQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWIT 221 (436)
T ss_pred cEEEeeeEEEccCCCcCCChHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeee
Confidence 589999999999999986 2 2335788888887432 1 234599999999999999888654 34688999
Q ss_pred c-CcCCccC---------cHHHH------------------------------HHHHHhh-------hcCCeEE-cceEE
Q psy14461 272 S-RRLLKHF---------DQEMV------------------------------RILLSSL-------TKAGVSI-QCCVI 303 (535)
Q Consensus 272 ~-~~~l~~~---------~~~~~------------------------------~~~~~~l-------~~~gV~i-~~~~v 303 (535)
| ..++|.. .++.. ..+.+.| .+..|.+ .++++
T Consensus 222 R~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev 301 (436)
T COG3486 222 RSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEV 301 (436)
T ss_pred ccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccce
Confidence 9 7776532 12221 1122222 2356889 99999
Q ss_pred EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC-CCCccccCeeecCCCceEcCCCCCcC-----CCCEEE
Q psy14461 304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA-ALNLHHIGVDIKKKSYVVCNEKDQTS-----VGNIFA 377 (535)
Q Consensus 304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~-~l~l~~~gl~~~~~G~i~vd~~~~T~-----~~~IyA 377 (535)
..++..++|++.+.+.+..+|+.+++++|.||+|||++...+ ++..-...+.++++|...|++.++.. .-.||+
T Consensus 302 ~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifv 381 (436)
T COG3486 302 QSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFV 381 (436)
T ss_pred eeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEE
Confidence 999988666677877766678888999999999999996655 44211123667889999999876531 136999
Q ss_pred eCCcCC----CCCCcHHHHHHHHHHHHHHHhCCC
Q psy14461 378 VGGIVH----GKPNNASMAAISARLIIERLYGMQ 407 (535)
Q Consensus 378 ~GD~~~----~~~~~~~~A~~~g~~aa~~i~g~~ 407 (535)
.|-..+ +.|.+.-.|.+.+.++ +.++|..
T Consensus 382 qn~e~htHGig~pdLsl~a~Raa~I~-~~L~g~~ 414 (436)
T COG3486 382 QNAELHTHGIGAPDLSLGAWRAAVIL-NSLLGRE 414 (436)
T ss_pred ecccccccccCCccchHHHHHHHHHH-HHHhCcC
Confidence 998765 4566777788877765 5666654
No 89
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.58 E-value=2.2e-13 Score=142.11 Aligned_cols=273 Identities=12% Similarity=0.039 Sum_probs=156.8
Q ss_pred EEEEeeCCccHHHHHHHHHh-hCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQ-TNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF 167 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~-~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (535)
.+|+|||+||+|+.+|...+ ..+.+|+|||+.+.+. |+..| +++. .......+...
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg----GLvR~--GVaP-------------dh~~~k~v~~~---- 96 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY----GLIRY--GVAP-------------DHIHVKNTYKT---- 96 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc----cEEEE--eCCC-------------CCccHHHHHHH----
Confidence 56899999999999987543 4588999999998763 34433 1221 11122222221
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC-CCC----------CC-------cee
Q psy14461 168 CIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP-EPR----------NS-------ALI 229 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~-~i~----------G~-------~v~ 229 (535)
+...+...+++++ +.+.+ +..+++++..-.||+||+|||+.+.. +|+ |+ +++
T Consensus 97 -------f~~~~~~~~v~f~-gnv~V--G~Dvt~eeL~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf 166 (506)
T PTZ00188 97 -------FDPVFLSPNYRFF-GNVHV--GVDLKMEELRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIF 166 (506)
T ss_pred -------HHHHHhhCCeEEE-eeeEe--cCccCHHHHHhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEE
Confidence 2233445688877 33322 23444544334899999999998665 411 21 344
Q ss_pred chhhHHhc-----------------c--CCCCcEEEECCChHHHHHHHHH--------------------HhCCC-cEEE
Q psy14461 230 SADDLFRL-----------------G--AWPGKTLVLGGSLMAVEIAATL--------------------NFLGV-PVTL 269 (535)
Q Consensus 230 ~~~~~~~~-----------------~--~~~k~vvViGgG~~g~e~A~~l--------------------~~~g~-~Vtl 269 (535)
++.++..+ . ...++++|||+|++|+++|..| ++.+. +|+|
T Consensus 167 ~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~i 246 (506)
T PTZ00188 167 HARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYI 246 (506)
T ss_pred ehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEE
Confidence 44333211 0 1236899999999999999974 33333 6888
Q ss_pred EEc-CcC--------------Ccc----C-cHH-----------------------HHHHHHHhhh----------cCCe
Q psy14461 270 VYS-RRL--------------LKH----F-DQE-----------------------MVRILLSSLT----------KAGV 296 (535)
Q Consensus 270 v~~-~~~--------------l~~----~-~~~-----------------------~~~~~~~~l~----------~~gV 296 (535)
+-| ... ++. + +.+ ..+.+.+... .+.+
T Consensus 247 vgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i 326 (506)
T PTZ00188 247 VGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKII 326 (506)
T ss_pred EEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEE
Confidence 876 211 010 0 011 1112222221 1446
Q ss_pred EE-cceEEEEEEEeCCCcE-EEEEecC--------CCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCC
Q psy14461 297 SI-QCCVIEKVISSFDGMK-GVRGFHP--------ESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE 366 (535)
Q Consensus 297 ~i-~~~~v~~i~~~~~~~~-~v~~~~~--------~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~ 366 (535)
.+ +..++.+|.+. ++++ .|+++.+ .+|+.+++++|+|+-|+|++...- + |+..|.+ +....
T Consensus 327 ~l~F~~sP~ei~~~-~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~----~--g~pFd~~--~~n~~ 397 (506)
T PTZ00188 327 EFIFYFEIRQIRPI-DGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF----A--ENLYNQS--VQMFK 397 (506)
T ss_pred EEEccCCceEEECC-CCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC----C--CCCcccc--CCCCC
Confidence 77 88888888753 3444 3555421 256667899999999999986531 1 2334422 22221
Q ss_pred CCC--cCCCCEEEeCCcCCCCCC-cHHHHHHHHHHHHHHHhC
Q psy14461 367 KDQ--TSVGNIFAVGGIVHGKPN-NASMAAISARLIIERLYG 405 (535)
Q Consensus 367 ~~~--T~~~~IyA~GD~~~~~~~-~~~~A~~~g~~aa~~i~g 405 (535)
.+ +..|++|++|.+. .+|. .+..-+.++.-.+.+|+.
T Consensus 398 -grv~~~~~g~Y~~GWiK-rGP~GvIgtn~~da~~t~~~v~~ 437 (506)
T PTZ00188 398 -EDIGQHKFAIFKAGWFD-KGPKGNIASQILNSKNSTHLVLN 437 (506)
T ss_pred -CcccCCCCCcEEeeecC-cCCCceeccCcccHHHHHHHHHH
Confidence 11 1379999999998 4443 444444555555666554
No 90
>KOG1800|consensus
Probab=99.53 E-value=3.5e-13 Score=132.45 Aligned_cols=279 Identities=13% Similarity=0.062 Sum_probs=158.9
Q ss_pred EEEeeCCccHHHHHHHHHhh--CCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461 90 YLDRIGDEGILLEEELKRQT--NQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF 167 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~--~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (535)
+|.|||+||||+-+|-..+. .+..|+|+|+.+.+ .|+..| +++. |-+++. ..
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP----FGLvRy--GVAP----------------DHpEvK----nv 75 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP----FGLVRY--GVAP----------------DHPEVK----NV 75 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc----cceeee--ccCC----------------CCcchh----hH
Confidence 57999999999988865544 56899999999854 233322 1221 111111 01
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC--CCCC---CceechhhHHhcc----
Q psy14461 168 CIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP--EPRN---SALISADDLFRLG---- 238 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~--~i~G---~~v~~~~~~~~~~---- 238 (535)
++.+ ...++.....|+-+. .-+..+.+...+-.||.||||+|+.-.+ +||| .++++++++..+-
T Consensus 76 intF----t~~aE~~rfsf~gNv---~vG~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P 148 (468)
T KOG1800|consen 76 INTF----TKTAEHERFSFFGNV---KVGRDVSLKELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLP 148 (468)
T ss_pred HHHH----HHHhhccceEEEecc---eecccccHHHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCC
Confidence 1111 133344455544432 1234466665667899999999996544 9999 6788888776542
Q ss_pred --------CCCCcEEEECCChHHHHHHHHHHhC-------------------C---CcEEEEEc-CcCCccC--------
Q psy14461 239 --------AWPGKTLVLGGSLMAVEIAATLNFL-------------------G---VPVTLVYS-RRLLKHF-------- 279 (535)
Q Consensus 239 --------~~~k~vvViGgG~~g~e~A~~l~~~-------------------g---~~Vtlv~~-~~~l~~~-------- 279 (535)
-...+|+|||.|++++++|..|... . .+|+|+.| .-.-..|
T Consensus 149 ~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~ 228 (468)
T KOG1800|consen 149 ENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREV 228 (468)
T ss_pred cccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHH
Confidence 1257899999999999999887432 0 26888876 3110000
Q ss_pred ----------c--------------------HHHHHHHHHhhhc---------CCe---EE-cceEEEEEEEeCCC--cE
Q psy14461 280 ----------D--------------------QEMVRILLSSLTK---------AGV---SI-QCCVIEKVISSFDG--MK 314 (535)
Q Consensus 280 ----------~--------------------~~~~~~~~~~l~~---------~gV---~i-~~~~v~~i~~~~~~--~~ 314 (535)
+ +++.+.+.+.+.+ .+. .+ +...+.+|.+..++ .+
T Consensus 229 ~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~ 308 (468)
T KOG1800|consen 229 LELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGV 308 (468)
T ss_pred hCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccccce
Confidence 0 1111222221111 111 11 22233333332111 11
Q ss_pred E--EEE-e---cCCCCCceEEEcCEEEEccCCCCCCC--CCCc-cccCeeecCCCceEcCCCCCcCCCCEEEeCCcCCCC
Q psy14461 315 G--VRG-F---HPESKEPFADVFKTVVNAMEKKFDFA--ALNL-HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGK 385 (535)
Q Consensus 315 ~--v~~-~---~~~~G~~~~~~~D~vi~a~G~~p~~~--~l~l-~~~gl~~~~~G~i~vd~~~~T~~~~IyA~GD~~~~~ 385 (535)
. ++. + ....|...+++|++++.++|++...- .++. ...|+-.+.+|++.+.. -.|++|+.|-+.+|.
T Consensus 309 ~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~~gipFd~~kgvv~n~~GrV~~s~----~~pglY~sGW~k~GP 384 (468)
T KOG1800|consen 309 RFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVDSGIPFDDKKGVVPNVNGRVLVSG----CSPGLYASGWVKHGP 384 (468)
T ss_pred EEEeeeehhhcccccCceEeeccceeEeeeeecccccCCCCCcccccCcccCCCceEEeec----cCCceEEEeeeccCC
Confidence 1 111 1 11246667899999999999875432 1111 12233334455554211 349999999999555
Q ss_pred CCcHHHHHHHHHHHHHHHhC
Q psy14461 386 PNNASMAAISARLIIERLYG 405 (535)
Q Consensus 386 ~~~~~~A~~~g~~aa~~i~g 405 (535)
...+..++.++..+|+.|..
T Consensus 385 ~GvIattm~dAf~v~d~I~q 404 (468)
T KOG1800|consen 385 TGVIATTMQDAFEVADTIVQ 404 (468)
T ss_pred cceeeehhhhHHHHHHHHHH
Confidence 56777888888888888864
No 91
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.52 E-value=3.5e-12 Score=133.10 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=118.8
Q ss_pred EEEECCChHHHHHH-HHHH----hCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEE
Q psy14461 244 TLVLGGSLMAVEIA-ATLN----FLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGV 316 (535)
Q Consensus 244 vvViGgG~~g~e~A-~~l~----~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v 316 (535)
=+|++.+.+|+|.+ ..++ ++|.+|+++.. +..++.. ++.+.+.+.+++.|+++ ++++|.+++.. ++.+.+
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~ 294 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTA 294 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEE
Confidence 37789999999999 6665 56999999988 7777754 78888999999999999 99999999876 454543
Q ss_pred EEecCCCCCceEEEcCEEEEccCCCCCCCCC---------------------------------CccccCeeecCCCceE
Q psy14461 317 RGFHPESKEPFADVFKTVVNAMEKKFDFAAL---------------------------------NLHHIGVDIKKKSYVV 363 (535)
Q Consensus 317 ~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l---------------------------------~l~~~gl~~~~~G~i~ 363 (535)
... .+|++..+++|.+++|+|+.+...+. .+...|+.+|++ ...
T Consensus 295 v~~--~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p 371 (422)
T PRK05329 295 VWT--RNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRP 371 (422)
T ss_pred EEe--eCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCc
Confidence 332 35665679999999999987654331 113446666543 555
Q ss_pred cCCCCCcCCCCEEEeCCcCCCCCCcHH------HHHHHHHHHHHHHhC
Q psy14461 364 CNEKDQTSVGNIFAVGGIVHGKPNNAS------MAAISARLIIERLYG 405 (535)
Q Consensus 364 vd~~~~T~~~~IyA~GD~~~~~~~~~~------~A~~~g~~aa~~i~g 405 (535)
+|...++..+|+||+|++. +++..+. +|+..|-.||++|..
T Consensus 372 ~~~~g~~~~~nl~a~G~vl-~g~d~~~~~~g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 372 LDSQGGPVIENLYAAGAVL-GGYDPIREGCGSGVALATALHAAEQIAE 418 (422)
T ss_pred ccCCCCeeccceEEeeehh-cCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence 6777777899999999999 7776653 688999999998874
No 92
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.52 E-value=1e-13 Score=131.22 Aligned_cols=169 Identities=17% Similarity=0.100 Sum_probs=94.4
Q ss_pred EeeCCccHHHHHHHHHhhCCCe-EEEEecCCcccccccccc-----cccccccchhhccccccc----------cccccc
Q psy14461 92 DRIGDEGILLEEELKRQTNQRR-DELQERGSHLSFRKKRRL-----YYPVAMSDLELEQDSTSA----------LNVTIR 155 (535)
Q Consensus 92 ~iiG~G~aG~~~al~~~~~~~~-V~lie~~~~~~~~~~~l~-----~~~~~i~~~~~~~~~~~~----------~~~~~~ 155 (535)
+|||+|++|+++|..+...+.+ |+|+|+++.++......+ ..|...... ..++.+.. ......
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSD-FGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGG-SS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCcccccc-ccCCcccccccccCCCCCCCcccC
Confidence 5899999999999988888888 999999976543221110 010000000 00000000 001112
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeE-EEE----ecCCEEEEce-eEEEcceEEEeeCc--eecC-CCCC-
Q psy14461 156 NWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTA-AAF----TNPHTIKLSN-RSVTGFNFLLAVER--RCLP-EPRN- 225 (535)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-~~~----~~~~~v~~~~-~~~~~d~lViATGs--~p~~-~i~G- 225 (535)
..+++.++. +...++.++++..++ ++. .+...|++.+ .++.+|+||+|||. .|.. ++||
T Consensus 80 ~~~~v~~yl-----------~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~ 148 (203)
T PF13738_consen 80 SGEEVLDYL-----------QEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGS 148 (203)
T ss_dssp BHHHHHHHH-----------HHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTG
T ss_pred CHHHHHHHH-----------HHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccc
Confidence 333333333 344555566654432 222 2245677766 48999999999996 7777 7888
Q ss_pred --CceechhhHHhcc-CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 226 --SALISADDLFRLG-AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 226 --~~v~~~~~~~~~~-~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
...+++.++.... ..+++|+|||+|.+|+++|..|.+.|.+|+++.|
T Consensus 149 ~~~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R 198 (203)
T PF13738_consen 149 AFRPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTR 198 (203)
T ss_dssp GCSEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEES
T ss_pred cccceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEec
Confidence 3456666665433 3469999999999999999999999999999998
No 93
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.43 E-value=2.2e-12 Score=102.99 Aligned_cols=76 Identities=33% Similarity=0.488 Sum_probs=71.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEe
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGF 319 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~ 319 (535)
+++|||||++|+|+|..|+++|.+||++++ +.+++.+++++.+.+.+.|+++||++ +++.+++++.++++ ++|+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~V~~~ 78 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VEVTLE 78 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EEEEEe
Confidence 689999999999999999999999999999 99999999999999999999999999 99999999988545 667775
No 94
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.35 E-value=5.4e-12 Score=133.32 Aligned_cols=167 Identities=16% Similarity=0.099 Sum_probs=104.3
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCe-EEEEecCCcccccc---------cccccccccccchhhcccccccc-cccccC
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRR-DELQERGSHLSFRK---------KRRLYYPVAMSDLELEQDSTSAL-NVTIRN 156 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~-V~lie~~~~~~~~~---------~~l~~~~~~i~~~~~~~~~~~~~-~~~~~~ 156 (535)
..+++|||+|++|++++..+...+.. ++++||.+.++... +..|.... .++..... ......
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~-------~~~~~p~~~~~~~~~ 80 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLL-------GFPFLPFRWDEAFAP 80 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchhee-------ccCCCccCCcccCCC
Confidence 46789999999999999888877777 99999997554221 11111100 01111110 011112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc----EEEEeE--EEEec---CCEEEEce-e--EEEcceEEEeeCc--eecC-
Q psy14461 157 WNAATKLIKRFCIRAKNDSMRELKALGI----DIVRTA--AAFTN---PHTIKLSN-R--SVTGFNFLLAVER--RCLP- 221 (535)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~~~gV----~~~~g~--~~~~~---~~~v~~~~-~--~~~~d~lViATGs--~p~~- 221 (535)
+..+.++.. ..++.+++ .+.+.. +.+.+ ..+|++++ . ++.+|+||+|||- .|..
T Consensus 81 ~~~~~~y~~-----------~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP 149 (443)
T COG2072 81 FAEIKDYIK-----------DYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIP 149 (443)
T ss_pred cccHHHHHH-----------HHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCC
Confidence 222233332 33333333 332222 22222 23566654 2 2679999999995 6766
Q ss_pred CCCC-----CceechhhHHhc-cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 222 EPRN-----SALISADDLFRL-GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 222 ~i~G-----~~v~~~~~~~~~-~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
+|+| ..++++.++... .-.+|+|+|||+|.+|+++|..|.+.|.+||++.|
T Consensus 150 ~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qR 206 (443)
T COG2072 150 DFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQR 206 (443)
T ss_pred CCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEec
Confidence 7888 235566655543 44679999999999999999999999999999999
No 95
>KOG1399|consensus
Probab=99.21 E-value=4.6e-10 Score=117.40 Aligned_cols=285 Identities=12% Similarity=0.023 Sum_probs=156.1
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccccc--------ccc-cc--cccchhhcccccccc---cccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRR--------LYY-PV--AMSDLELEQDSTSAL---NVTI 154 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l--------~~~-~~--~i~~~~~~~~~~~~~---~~~~ 154 (535)
.+++|||+|++||++|..+...+.+++++||.+.+++...-. ..| .. .++.+--.++.+... ....
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~~ 86 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRYF 86 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcccC
Confidence 467999999999999998888999999999998764322111 101 00 011111111111111 1112
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEE--Eec--CCEEEEce-----eEEEcceEEEeeCce--ecC-C
Q psy14461 155 RNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAA--FTN--PHTIKLSN-----RSVTGFNFLLAVERR--CLP-E 222 (535)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~--~~~--~~~v~~~~-----~~~~~d~lViATGs~--p~~-~ 222 (535)
.+..++.++.+.+.+.+.... -|.+-...+. ..+ ...|...+ .+.-||.|++|||-. |+. .
T Consensus 87 p~~~e~~~YL~~yA~~F~l~~-------~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 87 PSHREVLEYLRDYAKHFDLLK-------MINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred CCHHHHHHHHHHHHHhcChhh-------heEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCc
Confidence 344566666665554443210 1222221111 122 34555532 467899999999976 655 5
Q ss_pred CCC-------CceechhhHHhcc-CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc---CcCCccCcHHHHHHHHHhh
Q psy14461 223 PRN-------SALISADDLFRLG-AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS---RRLLKHFDQEMVRILLSSL 291 (535)
Q Consensus 223 i~G-------~~v~~~~~~~~~~-~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~---~~~l~~~~~~~~~~~~~~l 291 (535)
++| ..++++.++...+ -..|+|+|||.|++|+|+|..+++...+|++..+ ....+. ..+
T Consensus 160 ~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~----------~~~ 229 (448)
T KOG1399|consen 160 IPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPP----------EIL 229 (448)
T ss_pred CCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeeccccccccc----------cee
Confidence 665 1356666665433 3468999999999999999999998888888752 000000 000
Q ss_pred hcCCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccC--eeecCCCceEcCCCCC
Q psy14461 292 TKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG--VDIKKKSYVVCNEKDQ 369 (535)
Q Consensus 292 ~~~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~g--l~~~~~G~i~vd~~~~ 369 (535)
..++..... ++.+..+ + ..+. +++. ...+|.+|+|||+.-...++ +..+ ...+++ ... -..
T Consensus 230 -~~~~~~~~~-i~~~~e~--~---~~~~--~~~~--~~~~D~ii~ctgy~y~fPfl--~~~~~~~~~~~~-~~p---l~k 292 (448)
T KOG1399|consen 230 -GENLWQVPS-IKSFTED--G---SVFE--KGGP--VERVDRIIFCTGYKYKFPFL--ETLGLGTVRDNI-VGP---LYK 292 (448)
T ss_pred -ecceEEccc-cccccCc--c---eEEE--cCce--eEEeeeEEEeeeeEeeccee--ccCCceeeccCc-ccc---hhe
Confidence 112222111 4444322 1 2232 2565 78899999999999887776 2221 111111 000 111
Q ss_pred cCCCCEEEeCCcCCCCC---CcHHHHHHHHHHHHHHHhCCC
Q psy14461 370 TSVGNIFAVGGIVHGKP---NNASMAAISARLIIERLYGMQ 407 (535)
Q Consensus 370 T~~~~IyA~GD~~~~~~---~~~~~A~~~g~~aa~~i~g~~ 407 (535)
.-.|..++-|....+-+ ...+.-..|++.+++-+.|..
T Consensus 293 ~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~ 333 (448)
T KOG1399|consen 293 KVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRL 333 (448)
T ss_pred eccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCC
Confidence 22344444452210111 234567788888888888764
No 96
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.86 E-value=2.2e-06 Score=88.63 Aligned_cols=177 Identities=12% Similarity=0.079 Sum_probs=95.2
Q ss_pred EEEEeeCCccHHHHHHHHHh---hCCCeEEEEecCCcccccccccccccccccchhhcccccc-cccccccC-HHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQ---TNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTS-ALNVTIRN-WNAATKL 163 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~---~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~-~~~~~~~~-~~~l~~~ 163 (535)
.+|+|||+|+.|+..|..++ .....|.|||+...++ +|++|.... +....+.+... ... ..| .....+|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G---~GiaYs~~~-p~~~lNv~a~~mS~~--~pD~p~~F~~W 75 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG---QGIAYSTEE-PEHLLNVPAARMSAF--APDIPQDFVRW 75 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC---CCccCCCCC-chhhhcccccccccc--CCCCchHHHHH
Confidence 46899999999988764332 2333499999988653 334443110 00000111000 000 001 1112222
Q ss_pred HHHH-----------------------HHHHHHHHHHHHHhcC---cEEEEeEEEEecC------CEEEEce-eEEEcce
Q psy14461 164 IKRF-----------------------CIRAKNDSMRELKALG---IDIVRTAAAFTNP------HTIKLSN-RSVTGFN 210 (535)
Q Consensus 164 ~~~~-----------------------~~~~~~~~~~~~~~~g---V~~~~g~~~~~~~------~~v~~~~-~~~~~d~ 210 (535)
.+.. -..+...+..+++... |.+++.++..... ..++..+ ....+|-
T Consensus 76 L~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~ 155 (474)
T COG4529 76 LQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADI 155 (474)
T ss_pred HHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeE
Confidence 2221 1122233334444433 7777766544211 1222222 6678999
Q ss_pred EEEeeCceecC-C-----CCC-C----ceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCC--cEEEEEc
Q psy14461 211 FLLAVERRCLP-E-----PRN-S----ALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGV--PVTLVYS 272 (535)
Q Consensus 211 lViATGs~p~~-~-----i~G-~----~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~--~Vtlv~~ 272 (535)
+|+|||-.+.. + .+| . ..+.++.+..++ ...+|+|+|+|.+-++....|+++|. +||++.|
T Consensus 156 ~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~-~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSR 229 (474)
T COG4529 156 IVLATGHSAPPADPAARDLKGSPRLIADPYPANALDGVD-ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISR 229 (474)
T ss_pred EEEeccCCCCCcchhhhccCCCcceeccccCCccccccc-CCCceEEecCCchhHHHHHHHhccCCccceEEEec
Confidence 99999975544 2 233 1 123332222223 34569999999999999999999884 8999988
No 97
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.74 E-value=1.3e-07 Score=94.77 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=78.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc---C--------CccC-----cHHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR---L--------LKHF-----DQEMVRILLSSLTKAGVSI-QCCVIE 304 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~---~--------l~~~-----~~~~~~~~~~~l~~~gV~i-~~~~v~ 304 (535)
+|+|||||+.|+++|..|++.|.+|+++++ +. + .|.+ +.++...+++.+++.|+++ . .++.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 599999999999999999999999999997 41 1 1222 3678888888888999999 8 8899
Q ss_pred EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
+++.. ++.+.+++. +|+ ++.+|.+++|+|..|+...+
T Consensus 81 ~v~~~-~~~~~v~~~---~~~--~~~~d~liiAtG~~~~~~~i 117 (300)
T TIGR01292 81 KVDLS-DRPFKVKTG---DGK--EYTAKAVIIATGASARKLGI 117 (300)
T ss_pred EEEec-CCeeEEEeC---CCC--EEEeCEEEECCCCCcccCCC
Confidence 99875 455566653 565 79999999999999876543
No 98
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.60 E-value=4.5e-07 Score=99.58 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=83.2
Q ss_pred hhhHHhccCCCCcEEEECCCh--HHHHHHHHHHhCCCcEEEEEc-CcCCccCc--------------HHHHHHHHHhhhc
Q psy14461 231 ADDLFRLGAWPGKTLVLGGSL--MAVEIAATLNFLGVPVTLVYS-RRLLKHFD--------------QEMVRILLSSLTK 293 (535)
Q Consensus 231 ~~~~~~~~~~~k~vvViGgG~--~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~--------------~~~~~~~~~~l~~ 293 (535)
.+++.++...++++.|+|+++ ++.+++..+...+..++++.+ ..+++.++ ..+...+.+.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~ 226 (574)
T PRK12842 147 GKDMARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD 226 (574)
T ss_pred hhhHHhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh
Confidence 566777777889999999998 899999999999998888766 55554332 4566777888888
Q ss_pred CCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcC-EEEEccCCCCC
Q psy14461 294 AGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFK-TVVNAMEKKFD 343 (535)
Q Consensus 294 ~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D-~vi~a~G~~p~ 343 (535)
.|+++ .++.++++..+ ++++. |...+ .+.+..+.++ .||+|+|..++
T Consensus 227 ~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 227 LGIPILTGTPARELLTE-GGRVVGARVID--AGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred CCCEEEeCCEEEEEEee-CCEEEEEEEEc--CCceEEEEeCCEEEEcCCCccc
Confidence 99999 99999999865 45543 55542 2333457886 79999997764
No 99
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.58 E-value=2.4e-05 Score=81.33 Aligned_cols=135 Identities=11% Similarity=0.078 Sum_probs=84.5
Q ss_pred CCcEEEEEcCcCCc-cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 264 GVPVTLVYSRRLLK-HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 264 g~~Vtlv~~~~~l~-~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
|+.|.-+-. +-| .....+.+.+.+.+++.|+++ .+.+|.++..+ ++++..... .++.+..+.+|.+|+|+|.-
T Consensus 247 g~~v~E~pt--lPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t--~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 247 GLTLCELPT--MPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHT--RNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred CCCEEeCCC--CCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEe--cCCccceEECCEEEEccCCC
Confidence 665554432 222 235677888889999999999 99999998876 455543222 24433479999999999965
Q ss_pred -CCCC-----CCCccccCeee---------------cC----CCceEcCCCCCc-----CCCCEEEeCCcCCCCCCcH--
Q psy14461 342 -FDFA-----ALNLHHIGVDI---------------KK----KSYVVCNEKDQT-----SVGNIFAVGGIVHGKPNNA-- 389 (535)
Q Consensus 342 -p~~~-----~l~l~~~gl~~---------------~~----~G~i~vd~~~~T-----~~~~IyA~GD~~~~~~~~~-- 389 (535)
.+.- .+.-.-.++++ ++ .=.|.+|+++|. ..+|+||+|-+. ++...+
T Consensus 322 ~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL-~G~d~~~~ 400 (419)
T TIGR03378 322 FSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVL-GGYDPIFE 400 (419)
T ss_pred cCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhh-cCCChHhc
Confidence 2210 00000001111 00 112778888873 378999999998 554332
Q ss_pred ----HHHHHHHHHHHHHHh
Q psy14461 390 ----SMAAISARLIIERLY 404 (535)
Q Consensus 390 ----~~A~~~g~~aa~~i~ 404 (535)
-+|+..|-.||++|.
T Consensus 401 gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 401 GCGSGVAVSTALHAAEQII 419 (419)
T ss_pred CCCchhHHHHHHHHHHhhC
Confidence 268888888888873
No 100
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.51 E-value=9.6e-07 Score=89.04 Aligned_cols=96 Identities=20% Similarity=0.189 Sum_probs=77.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC-----------------------------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF----------------------------------------- 279 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~----------------------------------------- 279 (535)
..|+|||||+.|+-+|..++++|.+|+++++ +.+...+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 4699999999999999999999999999987 6432210
Q ss_pred --------------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461 280 --------------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK 332 (535)
Q Consensus 280 --------------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D 332 (535)
..++.+.+.+.+++.||++ ++++|.+|+.+ +....+.+ .+|+ ++.||
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~~~f~l~t---~~g~--~i~~d 157 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD-DSGFRLDT---SSGE--TVKCD 157 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec-CceEEEEc---CCCC--EEEcc
Confidence 0345667788899999999 99999999986 34566766 4787 89999
Q ss_pred EEEEccC--CCCC
Q psy14461 333 TVVNAME--KKFD 343 (535)
Q Consensus 333 ~vi~a~G--~~p~ 343 (535)
.+|+|+| .-|.
T Consensus 158 ~lilAtGG~S~P~ 170 (408)
T COG2081 158 SLILATGGKSWPK 170 (408)
T ss_pred EEEEecCCcCCCC
Confidence 9999999 4453
No 101
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.48 E-value=1e-06 Score=88.91 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=78.6
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc-------cccccccccccccccchhhccccccc-c--cccccCH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL-------SFRKKRRLYYPVAMSDLELEQDSTSA-L--NVTIRNW 157 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~-------~~~~~~l~~~~~~i~~~~~~~~~~~~-~--~~~~~~~ 157 (535)
..+|+|||+||||+-||......+++|+|||+++.+ +..+|++...-. ......+.|+... + --..++.
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~-~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA-PDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc-HHHHHHhCCCcchHHHHHHHhCCH
Confidence 368899999999999999999999999999999853 233343322100 0111112221100 0 0012233
Q ss_pred HHHHHHHHHH------------------HHHHHHHHHHHHHhcCcEEEEeEEEE-e--cC--CEEEEce-eEEEcceEEE
Q psy14461 158 NAATKLIKRF------------------CIRAKNDSMRELKALGIDIVRTAAAF-T--NP--HTIKLSN-RSVTGFNFLL 213 (535)
Q Consensus 158 ~~l~~~~~~~------------------~~~~~~~~~~~~~~~gV~~~~g~~~~-~--~~--~~v~~~~-~~~~~d~lVi 213 (535)
.+++++..++ ...+...+...+++.||+++..+... + ++ ..+.+.+ .++.+|.+||
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEE
Confidence 3344333322 12344455567788899998876432 2 22 3444444 4799999999
Q ss_pred eeC--ceecC
Q psy14461 214 AVE--RRCLP 221 (535)
Q Consensus 214 ATG--s~p~~ 221 (535)
||| |.|..
T Consensus 162 AtGG~S~P~l 171 (408)
T COG2081 162 ATGGKSWPKL 171 (408)
T ss_pred ecCCcCCCCC
Confidence 999 67754
No 102
>KOG1752|consensus
Probab=98.46 E-value=5.3e-07 Score=74.73 Aligned_cols=65 Identities=28% Similarity=0.320 Sum_probs=57.8
Q ss_pred hHHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461 48 PAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD 114 (535)
Q Consensus 48 ~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V 114 (535)
...+..++.+++|++|+|++|| ||.++|.++...+..+.+++++....|.. ++.+|.+.+++++|
T Consensus 4 ~~~v~~~i~~~~VVifSKs~C~-~c~~~k~ll~~~~v~~~vvELD~~~~g~e-iq~~l~~~tg~~tv 68 (104)
T KOG1752|consen 4 EAKVRKMISENPVVIFSKSSCP-YCHRAKELLSDLGVNPKVVELDEDEDGSE-IQKALKKLTGQRTV 68 (104)
T ss_pred HHHHHHHhhcCCEEEEECCcCc-hHHHHHHHHHhCCCCCEEEEccCCCCcHH-HHHHHHHhcCCCCC
Confidence 3467889999999999999999 99999999999999999999999988875 99999988776644
No 103
>PHA03050 glutaredoxin; Provisional
Probab=98.39 E-value=1.3e-06 Score=73.60 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=56.8
Q ss_pred hHHHHhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCC---cceEEEEEeeCCccHHHHHHHHHhhCCCeE-EEEecCCc
Q psy14461 48 PAYISRLSYENRILIFTHAVLREENARAERYLNARGD---RFAVLYLDRIGDEGILLEEELKRQTNQRRD-ELQERGSH 122 (535)
Q Consensus 48 ~~~~~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~---~~~~~~v~iiG~G~aG~~~al~~~~~~~~V-~lie~~~~ 122 (535)
+.+++.++++++|++|++++|| ||.++++++++.+. .++++++.-.+.+.. ++.++...++..+| .||-.+.+
T Consensus 3 ~~~v~~~i~~~~V~vys~~~CP-yC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~-~~~~l~~~tG~~tVP~IfI~g~~ 79 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKFTCP-FCRNALDILNKFSFKRGAYEIVDIKEFKPENE-LRDYFEQITGGRTVPRIFFGKTS 79 (108)
T ss_pred HHHHHHHhccCCEEEEECCCCh-HHHHHHHHHHHcCCCcCCcEEEECCCCCCCHH-HHHHHHHHcCCCCcCEEEECCEE
Confidence 4688999999999999999999 99999999999887 566777775555444 88888887776655 34444443
No 104
>PRK09897 hypothetical protein; Provisional
Probab=98.35 E-value=2.7e-05 Score=84.02 Aligned_cols=84 Identities=11% Similarity=-0.015 Sum_probs=49.4
Q ss_pred HHHhcC--cEEEEe-EEEEe--cCC--EEEEce--eEEEcceEEEeeCceecCCCCC-----CceechhhHHhccCCCCc
Q psy14461 178 ELKALG--IDIVRT-AAAFT--NPH--TIKLSN--RSVTGFNFLLAVERRCLPEPRN-----SALISADDLFRLGAWPGK 243 (535)
Q Consensus 178 ~~~~~g--V~~~~g-~~~~~--~~~--~v~~~~--~~~~~d~lViATGs~p~~~i~G-----~~v~~~~~~~~~~~~~k~ 243 (535)
.+...| ++++.. +++.+ ++. .+.+.+ ..+.+|+||||||..+....++ ..-|.. +..... .+.+
T Consensus 116 ~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p~~~~~~~~yi~~pw~~-~~~~~i-~~~~ 193 (534)
T PRK09897 116 QARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSG-LMEAKV-DACN 193 (534)
T ss_pred HHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCCCCChhhccccCCCCcc-hhhcCC-CCCe
Confidence 344455 566544 44433 223 333322 5689999999999743221122 112221 122111 2589
Q ss_pred EEEECCChHHHHHHHHHHhC
Q psy14461 244 TLVLGGSLMAVEIAATLNFL 263 (535)
Q Consensus 244 vvViGgG~~g~e~A~~l~~~ 263 (535)
|+|+|.|.++++++..|..+
T Consensus 194 V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 194 VGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred EEEECCCHHHHHHHHHHHhc
Confidence 99999999999999998865
No 105
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.35 E-value=2.1e-06 Score=93.89 Aligned_cols=106 Identities=18% Similarity=0.145 Sum_probs=79.6
Q ss_pred ccCCCCcEEEECCChHHHHHHHH-------HHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461 237 LGAWPGKTLVLGGSLMAVEIAAT-------LNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVI 307 (535)
Q Consensus 237 ~~~~~k~vvViGgG~~g~e~A~~-------l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~ 307 (535)
+...|+.++++|++++++|.+.. +.++|.+|+++.. +..+..+...+...+.+.+++.|+++ +++.++++.
T Consensus 156 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~ 235 (557)
T PRK07843 156 YGKVPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLY 235 (557)
T ss_pred cccccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEE
Confidence 34568889999999999998865 6677788887665 55555567778888889999999999 999999998
Q ss_pred EeCCCcEE-EEEecCCCCCceEEEcC-EEEEccC-CCCCCC
Q psy14461 308 SSFDGMKG-VRGFHPESKEPFADVFK-TVVNAME-KKFDFA 345 (535)
Q Consensus 308 ~~~~~~~~-v~~~~~~~G~~~~~~~D-~vi~a~G-~~p~~~ 345 (535)
.+ ++++. |.... +|++..+.++ .||+|+| +.+|.+
T Consensus 236 ~~-~g~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n~~ 273 (557)
T PRK07843 236 VE-DGRVTGVHAAE--SGEPQLIRARRGVILASGGFEHNEQ 273 (557)
T ss_pred Ee-CCEEEEEEEEe--CCcEEEEEeceeEEEccCCcCcCHH
Confidence 65 45543 54442 5666678886 6889775 555443
No 106
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.35 E-value=5.3e-06 Score=89.98 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=79.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc---CcCC-----------c-cCcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS---RRLL-----------K-HFDQEMVRILLSSLTKAGVSI-QCCVI 303 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~---~~~l-----------~-~~~~~~~~~~~~~l~~~gV~i-~~~~v 303 (535)
...+|+|||||+.|+.+|..+++.|.+|++++. .++. + ...+++.+.+.+.+++.|+++ .+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 347899999999999999999999999999963 1111 1 234667788888888899999 99999
Q ss_pred EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461 304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA 345 (535)
Q Consensus 304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~ 345 (535)
++++.. ++...+++. +|+ .+.+|.+++|+|..|...
T Consensus 291 ~~I~~~-~~~~~v~~~---~g~--~i~~d~lIlAtGa~~~~~ 326 (515)
T TIGR03140 291 KKIETE-DGLIVVTLE---SGE--VLKAKSVIVATGARWRKL 326 (515)
T ss_pred EEEEec-CCeEEEEEC---CCC--EEEeCEEEECCCCCcCCC
Confidence 999765 345566663 666 799999999999987543
No 107
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.34 E-value=6.1e-06 Score=87.89 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=79.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc------------------------------------------
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK------------------------------------------ 277 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~------------------------------------------ 277 (535)
.++|+|||+|++|+-+|..|++.|.+|+++++ +.+..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 58999999999999999999999999999987 53210
Q ss_pred ---c---------------CcHHHHHHHHHhhhcCCeE--E-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEE
Q psy14461 278 ---H---------------FDQEMVRILLSSLTKAGVS--I-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN 336 (535)
Q Consensus 278 ---~---------------~~~~~~~~~~~~l~~~gV~--i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~ 336 (535)
. -..++.+++++..+..|+. + ++++|++++.. ++++.|++.+ .++...+..+|.||+
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~~w~V~~~~-~~~~~~~~~~d~VIv 167 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DGKWRVQSKN-SGGFSKDEIFDAVVV 167 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec-CCeEEEEEEc-CCCceEEEEcCEEEE
Confidence 0 0045667777777788887 8 99999999876 5667787753 123333568999999
Q ss_pred ccC--CCCCCCCC
Q psy14461 337 AME--KKFDFAAL 347 (535)
Q Consensus 337 a~G--~~p~~~~l 347 (535)
|+| ..|+...+
T Consensus 168 AtG~~~~P~~P~i 180 (461)
T PLN02172 168 CNGHYTEPNVAHI 180 (461)
T ss_pred eccCCCCCcCCCC
Confidence 999 56765543
No 108
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.33 E-value=3.9e-06 Score=79.19 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=65.6
Q ss_pred EEECCChHHHHHHHHHHhCCCc-EEEEEc-CcCCc--------------c-------------C----------------
Q psy14461 245 LVLGGSLMAVEIAATLNFLGVP-VTLVYS-RRLLK--------------H-------------F---------------- 279 (535)
Q Consensus 245 vViGgG~~g~e~A~~l~~~g~~-Vtlv~~-~~~l~--------------~-------------~---------------- 279 (535)
+|||+|+.|+-+|..|.+.|.+ |+++++ +.+.. . +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999998 999998 54310 0 0
Q ss_pred cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC--CCCCCCC
Q psy14461 280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK--KFDFAAL 347 (535)
Q Consensus 280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~--~p~~~~l 347 (535)
.+++.+++++..++.++++ .+++|+++... ++...|++. +++ ++.+|.||+|+|. .|+...+
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~-~~~w~v~~~---~~~--~~~a~~VVlAtG~~~~p~~p~~ 145 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRD-GDGWTVTTR---DGR--TIRADRVVLATGHYSHPRIPDI 145 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEE-TTTEEEEET---TS---EEEEEEEEE---SSCSB---S-
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEe-ccEEEEEEE---ecc--eeeeeeEEEeeeccCCCCcccc
Confidence 1345567778888889999 99999999988 456888884 664 7889999999996 5655433
No 109
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.32 E-value=2.7e-06 Score=89.19 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=69.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCC--cEEEEEc-CcC-C--ccCcHHHH-----H----HHHHhhhcCCeEE-cceEEE
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGV--PVTLVYS-RRL-L--KHFDQEMV-----R----ILLSSLTKAGVSI-QCCVIE 304 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~--~Vtlv~~-~~~-l--~~~~~~~~-----~----~~~~~l~~~gV~i-~~~~v~ 304 (535)
.++|+|||||+.|+.+|..|++.|. +|+++++ +.+ . +.+.+.+. + .-.+.+.+.||++ .++.+.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999999875 7999987 332 1 22222211 0 0123356679999 999999
Q ss_pred EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461 305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF 344 (535)
Q Consensus 305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~ 344 (535)
.++.. ...|.+. +|+ ++.+|.+++|||.+|..
T Consensus 83 ~id~~---~~~v~~~---~g~--~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGRD---TRELVLT---NGE--SWHWDQLFIATGAAARP 114 (396)
T ss_pred EEECC---CCEEEEC---CCC--EEEcCEEEEccCCCCCC
Confidence 99764 2345553 676 79999999999999864
No 110
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.28 E-value=3.3e-06 Score=88.27 Aligned_cols=95 Identities=23% Similarity=0.270 Sum_probs=62.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC------------------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF------------------------------------------ 279 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~------------------------------------------ 279 (535)
+|+|||||+.|+-+|..+++.|.+|+|+++ +++...+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 589999999999999999999999999998 6432110
Q ss_pred --------------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461 280 --------------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK 332 (535)
Q Consensus 280 --------------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D 332 (535)
..++.+.+++.+++.||++ ++++|.+|+..+++.+.|.++ +++ .+.+|
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~---~~~--~~~a~ 156 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTK---NGG--EYEAD 156 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEET---TTE--EEEES
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeecc---Ccc--cccCC
Confidence 0345566777888899999 999999998863333677762 444 89999
Q ss_pred EEEEccCCCC
Q psy14461 333 TVVNAMEKKF 342 (535)
Q Consensus 333 ~vi~a~G~~p 342 (535)
.||+|+|-..
T Consensus 157 ~vILAtGG~S 166 (409)
T PF03486_consen 157 AVILATGGKS 166 (409)
T ss_dssp EEEE----SS
T ss_pred EEEEecCCCC
Confidence 9999999654
No 111
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.28 E-value=4.5e-06 Score=88.95 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=71.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcC------CccC-----c--HHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRL------LKHF-----D--QEMVRILLSSLTKAGVSI-QCCVIE 304 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~------l~~~-----~--~~~~~~~~~~l~~~gV~i-~~~~v~ 304 (535)
++|+|||||+.|+.+|..|++++ .+|+++++ +.+ ++.+ + .++.....+.+++.||++ .++.++
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 47999999999999999999886 48999998 643 1211 1 122333345577789999 999999
Q ss_pred EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461 305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346 (535)
Q Consensus 305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~ 346 (535)
+|+.+ +.. |++.+..+|+...+++|.+++|+|.+|+...
T Consensus 81 ~id~~-~~~--v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 119 (444)
T PRK09564 81 KVDAK-NKT--ITVKNLKTGSIFNDTYDKLMIATGARPIIPP 119 (444)
T ss_pred EEECC-CCE--EEEEECCCCCEEEecCCEEEECCCCCCCCCC
Confidence 99865 333 4443212355223349999999999987654
No 112
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.27 E-value=2e-06 Score=71.37 Aligned_cols=61 Identities=21% Similarity=0.166 Sum_probs=48.0
Q ss_pred HhhhcCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461 52 SRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD 114 (535)
Q Consensus 52 ~~~i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V 114 (535)
.++|++++|++|++++|| +|.++|+++.+.+.++.+++|+..-.+.. +..++...++..+|
T Consensus 2 ~~~i~~~~Vvvysk~~Cp-~C~~ak~~L~~~~i~~~~vdid~~~~~~~-~~~~l~~~tg~~tv 62 (99)
T TIGR02189 2 RRMVSEKAVVIFSRSSCC-MCHVVKRLLLTLGVNPAVHEIDKEPAGKD-IENALSRLGCSPAV 62 (99)
T ss_pred hhhhccCCEEEEECCCCH-HHHHHHHHHHHcCCCCEEEEcCCCccHHH-HHHHHHHhcCCCCc
Confidence 467899999999999999 99999999999999988888775544333 66677665555443
No 113
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.24 E-value=1.2e-05 Score=87.24 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=79.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc---CcC---------C---ccCcHHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS---RRL---------L---KHFDQEMVRILLSSLTKAGVSI-QCCVIE 304 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~---~~~---------l---~~~~~~~~~~~~~~l~~~gV~i-~~~~v~ 304 (535)
..+|+|||||+.|+.+|..+++.|.+|+++.. ... . ....+++.+.+.+.+++.|+++ .++++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 35899999999999999999999999999964 111 0 1234678888888899999999 999999
Q ss_pred EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461 305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA 345 (535)
Q Consensus 305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~ 345 (535)
++... ++...|.+. +|+ ++.+|.+++|+|.+|...
T Consensus 291 ~I~~~-~~~~~V~~~---~g~--~i~a~~vViAtG~~~r~~ 325 (517)
T PRK15317 291 KLEPA-AGLIEVELA---NGA--VLKAKTVILATGARWRNM 325 (517)
T ss_pred EEEec-CCeEEEEEC---CCC--EEEcCEEEECCCCCcCCC
Confidence 99875 355666663 666 799999999999987643
No 114
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.23 E-value=5.5e-06 Score=86.56 Aligned_cols=131 Identities=13% Similarity=0.091 Sum_probs=61.1
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc-------ccccccccccccccchhhccccc-cccc--ccccCHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS-------FRKKRRLYYPVAMSDLELEQDST-SALN--VTIRNWN 158 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~-------~~~~~l~~~~~~i~~~~~~~~~~-~~~~--~~~~~~~ 158 (535)
++|+|||+|++|+.||+.+...+.+|+|+|+++.++ ..+|.+.............++.. ..+. -..++..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 478999999999999999999999999999997531 22333221000000000000000 0000 0011222
Q ss_pred HHHHHHHHH------------------HHHHHHHHHHHHHhcCcEEEEeE-EEEe--cCC---EEEE-ceeEEEcceEEE
Q psy14461 159 AATKLIKRF------------------CIRAKNDSMRELKALGIDIVRTA-AAFT--NPH---TIKL-SNRSVTGFNFLL 213 (535)
Q Consensus 159 ~l~~~~~~~------------------~~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~---~v~~-~~~~~~~d~lVi 213 (535)
++..+..+. ...+...+...+++.||+++.++ +..+ ++. .|.+ ++..+.+|+|||
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEE
Confidence 222222211 12344445566778899998775 3332 232 3566 458999999999
Q ss_pred eeCcee
Q psy14461 214 AVERRC 219 (535)
Q Consensus 214 ATGs~p 219 (535)
|||...
T Consensus 161 AtGG~S 166 (409)
T PF03486_consen 161 ATGGKS 166 (409)
T ss_dssp ----SS
T ss_pred ecCCCC
Confidence 999643
No 115
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.23 E-value=1.5e-05 Score=81.50 Aligned_cols=102 Identities=19% Similarity=0.087 Sum_probs=75.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC------------------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF------------------------------------------ 279 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~------------------------------------------ 279 (535)
+|+|||||+.|+-+|..|++.|.+|+|+++ +.+.+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 599999999999999999999999999998 5321100
Q ss_pred ---------------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEc
Q psy14461 280 ---------------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVF 331 (535)
Q Consensus 280 ---------------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~ 331 (535)
..++.+.+.+.+++.|+++ .++++..++.+ ++.+.+.+....+|+.+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d-~~~~~~~~~~~~~g~~~~i~a 161 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQD-DDGVTVVVRDGEDGEEETIEA 161 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEE-TTEEEEEEEETCTCEEEEEEE
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccc-ccccccccccccCCceeEEEE
Confidence 0345556667777789999 99999999877 455666665444677668999
Q ss_pred CEEEEccCCCCCCC
Q psy14461 332 KTVVNAMEKKFDFA 345 (535)
Q Consensus 332 D~vi~a~G~~p~~~ 345 (535)
|+||-|-|......
T Consensus 162 dlvVgADG~~S~vR 175 (356)
T PF01494_consen 162 DLVVGADGAHSKVR 175 (356)
T ss_dssp SEEEE-SGTT-HHH
T ss_pred eeeecccCcccchh
Confidence 99999999886543
No 116
>PRK06847 hypothetical protein; Provisional
Probab=98.19 E-value=1.7e-05 Score=82.48 Aligned_cols=99 Identities=20% Similarity=0.205 Sum_probs=76.4
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc------------------------------------------
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK------------------------------------------ 277 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~------------------------------------------ 277 (535)
.++|+|||||+.|+-+|..|++.|.+|+++++ +.+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 46899999999999999999999999999997 43100
Q ss_pred ---cC-----------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEE
Q psy14461 278 ---HF-----------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN 336 (535)
Q Consensus 278 ---~~-----------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~ 336 (535)
.+ ..++.+.+.+.+++.|+++ .++++++++.+ ++.+.+.+. +|+ ++.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~ad~vI~ 157 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQD-DDGVTVTFS---DGT--TGRYDLVVG 157 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCEEEEEEc---CCC--EEEcCEEEE
Confidence 00 0233455666667789999 99999999875 455667663 676 799999999
Q ss_pred ccCCCCCCC
Q psy14461 337 AMEKKFDFA 345 (535)
Q Consensus 337 a~G~~p~~~ 345 (535)
|.|..+...
T Consensus 158 AdG~~s~~r 166 (375)
T PRK06847 158 ADGLYSKVR 166 (375)
T ss_pred CcCCCcchh
Confidence 999887654
No 117
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.19 E-value=1.3e-05 Score=88.25 Aligned_cols=230 Identities=16% Similarity=0.056 Sum_probs=127.1
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc---ccccccccccch-hhcccccccccccccCHHHHHHH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK---RRLYYPVAMSDL-ELEQDSTSALNVTIRNWNAATKL 163 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~---~l~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~l~~~ 163 (535)
..+|+|||+|.+|+.+|+.....+.+|+|+||.+.+++... +... +++. .....+ ...+.+.+.++
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~----~~~~~~~~~~g------~~~~~~~~~~~ 81 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMW----IPRNPLARRAG------IVEDIEQPRTY 81 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccCceee----cCccHHhhhcc------ccchHHHHHHH
Confidence 36789999999999999998888999999999875433211 1110 0100 000000 01112222211
Q ss_pred HHH---------HHHHHH---HHHHHHHHh-cCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC--CCCCCce
Q psy14461 164 IKR---------FCIRAK---NDSMRELKA-LGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP--EPRNSAL 228 (535)
Q Consensus 164 ~~~---------~~~~~~---~~~~~~~~~-~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~--~i~G~~v 228 (535)
... .+..+. ....++++. .++++..... . ..+.....-.++|.++.. +++|..
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~s~~~~~wl~~~~gv~~~~~~~---------~--~d~~~~~~~~~~ggr~~~~~~~~g~~- 149 (581)
T PRK06134 82 LRHELGARYDAARIDAFLEAGPHMVAFFERHTALRFADGNA---------I--PDYHGDTPGAATGGRSLIAAPFDGRE- 149 (581)
T ss_pred HHHHhCcCCCHHHHHHHHhccHHHHHHHHhcCCceeeecCC---------C--CCCCCCCCCCCCCCCeeccCCCChhh-
Confidence 111 111111 112234544 3555421100 0 011112222455655543 445410
Q ss_pred echhhHHhccCCCCcEEEECCChHH-HHHHHHHHhCCCcEEEEEc-CcCCcc--------------CcHHHHHHHHHhhh
Q psy14461 229 ISADDLFRLGAWPGKTLVLGGSLMA-VEIAATLNFLGVPVTLVYS-RRLLKH--------------FDQEMVRILLSSLT 292 (535)
Q Consensus 229 ~~~~~~~~~~~~~k~vvViGgG~~g-~e~A~~l~~~g~~Vtlv~~-~~~l~~--------------~~~~~~~~~~~~l~ 292 (535)
..+++..+...+.++.++|++.++ .+++..+...+..+.+..+ ..+++. ....+...+.+.++
T Consensus 150 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~ 228 (581)
T PRK06134 150 -LGALLERLRKPLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAE 228 (581)
T ss_pred -hhHHHHHhccccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHH
Confidence 114555566667788889988876 7788777766665555433 322221 23456677888888
Q ss_pred cCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEc-CEEEEccCCCCC
Q psy14461 293 KAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVF-KTVVNAMEKKFD 343 (535)
Q Consensus 293 ~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~-D~vi~a~G~~p~ 343 (535)
+.|+++ .++.++++..+ ++++. |..+. ++...++.+ +.||+|+|--.+
T Consensus 229 ~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 229 DLGVRIWESAPARELLRE-DGRVAGAVVET--PGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred hCCCEEEcCCEEEEEEEe-CCEEEEEEEEE--CCcEEEEEeCCEEEEcCCCccc
Confidence 999999 99999998765 45543 44442 344446888 999999986543
No 118
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.18 E-value=8.8e-06 Score=86.52 Aligned_cols=102 Identities=10% Similarity=0.131 Sum_probs=69.2
Q ss_pred CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCC--c-cCcHHH-------HHHH----HHhhhcCCeEE-cceEE
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLL--K-HFDQEM-------VRIL----LSSLTKAGVSI-QCCVI 303 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l--~-~~~~~~-------~~~~----~~~l~~~gV~i-~~~~v 303 (535)
++|+|||||+.|+.+|..|+++ +.+|+|+++ +.+. + .++.-. .+.+ ....++.||++ .+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 4799999999999999999887 579999998 5321 1 111100 0111 22235579999 99999
Q ss_pred EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461 304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346 (535)
Q Consensus 304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~ 346 (535)
++|+.+ +. .|.+.+..+++..++++|.+++|||.+|+...
T Consensus 82 ~~Id~~-~~--~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~ 121 (438)
T PRK13512 82 IAINDE-RQ--TVTVLNRKTNEQFEESYDKLILSPGASANSLG 121 (438)
T ss_pred EEEECC-CC--EEEEEECCCCcEEeeecCEEEECCCCCCCCCC
Confidence 999875 33 34443212234345789999999999997543
No 119
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.13 E-value=1.6e-05 Score=84.25 Aligned_cols=103 Identities=12% Similarity=0.040 Sum_probs=72.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--ccC---------cHHHHHHHHHhhhcCCeEEcceEEEEEEE
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--KHF---------DQEMVRILLSSLTKAGVSIQCCVIEKVIS 308 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--~~~---------~~~~~~~~~~~l~~~gV~i~~~~v~~i~~ 308 (535)
.++|||||||+.|+.+|..|.+.+.+||+|++ +.+. +.+ ..++...+.+.++..++++...+|++|+.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~Id~ 89 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDVDF 89 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEEEc
Confidence 46899999999999999999776789999998 5432 211 12333445566777788885578999987
Q ss_pred eCCCcEEEEEecC-----CCCCceEEEcCEEEEccCCCCCCCC
Q psy14461 309 SFDGMKGVRGFHP-----ESKEPFADVFKTVVNAMEKKFDFAA 346 (535)
Q Consensus 309 ~~~~~~~v~~~~~-----~~G~~~~~~~D~vi~a~G~~p~~~~ 346 (535)
+ +..+.+..... .+|+ ++++|.+++|+|..|+...
T Consensus 90 ~-~~~v~~~~~~~~~~~~~~g~--~i~yD~LViAtGs~~~~~~ 129 (424)
T PTZ00318 90 E-EKRVKCGVVSKSNNANVNTF--SVPYDKLVVAHGARPNTFN 129 (424)
T ss_pred C-CCEEEEecccccccccCCce--EecCCEEEECCCcccCCCC
Confidence 5 34343321100 1344 7999999999999987543
No 120
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.13 E-value=9.1e-05 Score=72.76 Aligned_cols=164 Identities=17% Similarity=0.196 Sum_probs=98.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc--------------------------------------CcHH
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH--------------------------------------FDQE 282 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~--------------------------------------~~~~ 282 (535)
-+|+|||+|+.|+-+|..|++.|.+|.++++ ..+... ...+
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~ 105 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVE 105 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHH
Confidence 5799999999999999999999999999998 543110 0123
Q ss_pred HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecC---CCC---CceEEEcCEEEEccCCCCCCCCCCccc---
Q psy14461 283 MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHP---ESK---EPFADVFKTVVNAMEKKFDFAALNLHH--- 351 (535)
Q Consensus 283 ~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~---~~G---~~~~~~~D~vi~a~G~~p~~~~l~l~~--- 351 (535)
+...+.+...+.|+++ .++.+.++..++++++ -+....+ .+| +..++.++.||.|+|........-.+.
T Consensus 106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~~ 185 (257)
T PRK04176 106 AAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGPE 185 (257)
T ss_pred HHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcCC
Confidence 4445566667789999 9999999876533343 2332210 011 235799999999999644321100000
Q ss_pred cCeeecCCCceEcC--C-----CCCcCCCCEEEeCCcCC---CCCCcHHH--H-HHHHHHHHHHHhC
Q psy14461 352 IGVDIKKKSYVVCN--E-----KDQTSVGNIFAVGGIVH---GKPNNASM--A-AISARLIIERLYG 405 (535)
Q Consensus 352 ~gl~~~~~G~i~vd--~-----~~~T~~~~IyA~GD~~~---~~~~~~~~--A-~~~g~~aa~~i~g 405 (535)
.+...-.......+ + +.+-=.||+|++|=+++ +.|...+. + .-.|+.||+-|+.
T Consensus 186 ~~~~~~g~~~~~~~~~e~~v~~~t~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 186 LGIEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred cccccCCccccccCchHHHHHhcCCeEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHH
Confidence 00100000111111 1 11113799999998765 44444332 2 4478888887764
No 121
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.09 E-value=3.5e-05 Score=76.87 Aligned_cols=96 Identities=17% Similarity=0.051 Sum_probs=73.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-------------------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------------------------------------------- 278 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------------------------------------------- 278 (535)
+|+|||||+.|+-+|..|++.|.+|+++++ +.+...
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 589999999999999999999999999998 432100
Q ss_pred ------C-cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 279 ------F-DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 279 ------~-~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
+ ..++.+.+.+.+++.|+++ .+++++++..+ ++.+.+.+. .++. ++++|.||.|+|....
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~-~~~~~~~~~--~~~~--~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIH-DDRVVVIVR--GGEG--TVTAKIVIGADGSRSI 149 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEe-CCEEEEEEc--CccE--EEEeCEEEECCCcchH
Confidence 0 1345566677777889999 99999998776 455566553 1333 7999999999998654
No 122
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.08 E-value=7.6e-05 Score=73.10 Aligned_cols=164 Identities=18% Similarity=0.225 Sum_probs=100.3
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC----------cc----------------------------CcH
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL----------KH----------------------------FDQ 281 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l----------~~----------------------------~~~ 281 (535)
.-+|+|||+|+.|+-+|..|++.|.+|.++++ ..+. +. ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 35799999999999999999999999999998 5431 00 012
Q ss_pred HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC-cE-EEEEecC---CCC---CceEEEcCEEEEccCCCCCC-CCCCccc
Q psy14461 282 EMVRILLSSLTKAGVSI-QCCVIEKVISSFDG-MK-GVRGFHP---ESK---EPFADVFKTVVNAMEKKFDF-AALNLHH 351 (535)
Q Consensus 282 ~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~-~~-~v~~~~~---~~G---~~~~~~~D~vi~a~G~~p~~-~~l~l~~ 351 (535)
++.+.+.+...+.|+++ .++.+.++..+++. ++ -|.+... .+| +..+++++.||.|+|..... .++ .+.
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l-~~~ 179 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC-AKK 179 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH-HHH
Confidence 34445556667789999 99999998765332 23 2333210 012 23579999999999965432 222 122
Q ss_pred cCeeecC---CC--ceEcCC-------CCCcCCCCEEEeCCcCC---CCCCcHHH--H-HHHHHHHHHHHhC
Q psy14461 352 IGVDIKK---KS--YVVCNE-------KDQTSVGNIFAVGGIVH---GKPNNASM--A-AISARLIIERLYG 405 (535)
Q Consensus 352 ~gl~~~~---~G--~i~vd~-------~~~T~~~~IyA~GD~~~---~~~~~~~~--A-~~~g~~aa~~i~g 405 (535)
.++.... .| ....+. +.+-=.||+|++|=.++ +.|...+. + .-.|+.||+-|+.
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 1211111 01 111111 11124799999998765 44444432 3 4478888887764
No 123
>PRK10262 thioredoxin reductase; Provisional
Probab=98.08 E-value=5.8e-05 Score=76.82 Aligned_cols=99 Identities=15% Similarity=0.080 Sum_probs=70.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc---C--------Ccc-----CcHHHHHHHHHhhhcCCeEE-cce
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR---L--------LKH-----FDQEMVRILLSSLTKAGVSI-QCC 301 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~---~--------l~~-----~~~~~~~~~~~~l~~~gV~i-~~~ 301 (535)
..++|+|||||+.|+.+|..++++|.++++++. +. + +|. ..+++.+.+.+.....++++ .+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 357899999999999999999999999999865 21 1 111 12345666677777777777 54
Q ss_pred EEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461 302 VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346 (535)
Q Consensus 302 ~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~ 346 (535)
.+..++.. ++.+.++. +.. .+.+|.||+|+|..|+...
T Consensus 84 ~v~~v~~~-~~~~~v~~----~~~--~~~~d~vilAtG~~~~~~~ 121 (321)
T PRK10262 84 HINKVDLQ-NRPFRLTG----DSG--EYTCDALIIATGASARYLG 121 (321)
T ss_pred EEEEEEec-CCeEEEEe----cCC--EEEECEEEECCCCCCCCCC
Confidence 56667654 34444443 223 5899999999999987543
No 124
>PRK07236 hypothetical protein; Provisional
Probab=98.06 E-value=2.6e-05 Score=81.56 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=71.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc------CcHHHHHHHHHh-----------------------
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------FDQEMVRILLSS----------------------- 290 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------~~~~~~~~~~~~----------------------- 290 (535)
+.+|+|||||++|+.+|..|++.|.+|+|+++ +...+. +.+...+.+.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 47899999999999999999999999999999 644321 233333322221
Q ss_pred --------------------hhc--CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461 291 --------------------LTK--AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF 344 (535)
Q Consensus 291 --------------------l~~--~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~ 344 (535)
|.+ .++++ .++++++++.+ ++.++|+++ +|+ ++.+|+||.|-|.....
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQD-GDRVTARFA---DGR--RETADLLVGADGGRSTV 156 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEec-CCeEEEEEC---CCC--EEEeCEEEECCCCCchH
Confidence 110 13568 89999999876 456777774 677 79999999999987654
No 125
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.06 E-value=3.2e-05 Score=83.73 Aligned_cols=136 Identities=18% Similarity=0.145 Sum_probs=86.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC-----------------------------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF----------------------------------------- 279 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~----------------------------------------- 279 (535)
|+|+|||+|.+|+-.|..|.+.|.+++++++ +.+...+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 7999999999999999999999999999998 6542110
Q ss_pred -cHHHHHHHHHhhhcCCe--EE-cceEEEEEEEeCC----CcEEEEEecCCCCCceEEEcCEEEEccCCC--CCCCCCCc
Q psy14461 280 -DQEMVRILLSSLTKAGV--SI-QCCVIEKVISSFD----GMKGVRGFHPESKEPFADVFKTVVNAMEKK--FDFAALNL 349 (535)
Q Consensus 280 -~~~~~~~~~~~l~~~gV--~i-~~~~v~~i~~~~~----~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~--p~~~~l~l 349 (535)
.+++.+++++..+.-++ .+ ++++|.+++..++ ++..|+.. .+|+..+..+|.|++|+|.- |+.+.-
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~--~~g~~~~~~fD~VvvatG~~~~P~~P~~-- 157 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE--NDGKEETEEFDAVVVATGHFSKPNIPEP-- 157 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET--TTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee--cCCeEEEEEeCeEEEcCCCcCCCCCChh--
Confidence 15677888888777776 47 8999999987533 35667764 36766677899999999973 554420
Q ss_pred cccCeeecCCCceEcCCCCCc----CCCCEEEeCCcC
Q psy14461 350 HHIGVDIKKKSYVVCNEKDQT----SVGNIFAVGGIV 382 (535)
Q Consensus 350 ~~~gl~~~~~G~i~vd~~~~T----~~~~IyA~GD~~ 382 (535)
.-.|++.- +|.+.=...++. ..++|-++|-..
T Consensus 158 ~~~G~e~F-~G~i~HS~~yr~~~~f~gKrVlVVG~g~ 193 (531)
T PF00743_consen 158 SFPGLEKF-KGEIIHSKDYRDPEPFKGKRVLVVGGGN 193 (531)
T ss_dssp --CTGGGH-CSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred hhhhhhcC-CeeEEccccCcChhhcCCCEEEEEeCCH
Confidence 01123211 354433333332 345788888644
No 126
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.04 E-value=0.00024 Score=76.97 Aligned_cols=33 Identities=15% Similarity=-0.021 Sum_probs=30.0
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS 121 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~ 121 (535)
++|+|||+|++|+.+|......+.+|+|+|++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 368999999999999999988899999999874
No 127
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.04 E-value=1.6e-05 Score=81.96 Aligned_cols=104 Identities=18% Similarity=0.030 Sum_probs=69.1
Q ss_pred cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc---------CcHHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461 238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH---------FDQEMVRILLSSLTKAGVSI-QCCVIEKV 306 (535)
Q Consensus 238 ~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~---------~~~~~~~~~~~~l~~~gV~i-~~~~v~~i 306 (535)
...+++|+|||+|+.|+++|..|++.|.+|+++++ +.+... .+.+......+.+.+.|+++ .++.+..+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~ 94 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG 94 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence 45678999999999999999999999999999998 665321 22333334445566679999 88888655
Q ss_pred EE---eCCCcEEEEEecCCCCCceEEEcCEEEEccCCC-CCC
Q psy14461 307 IS---SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK-FDF 344 (535)
Q Consensus 307 ~~---~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~-p~~ 344 (535)
.. ..++....... +.+...+.+|.|++|+|.. |..
T Consensus 95 ~~~~~~~~~~~~~~~~---~~~~~~~~~d~lviAtGs~~~~~ 133 (352)
T PRK12770 95 EPLHEEEGDEFVERIV---SLEELVKKYDAVLIATGTWKSRK 133 (352)
T ss_pred cccccccccccccccC---CHHHHHhhCCEEEEEeCCCCCCc
Confidence 32 10111111110 1111147899999999983 543
No 128
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.03 E-value=8.3e-06 Score=76.68 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=71.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---ccCc-----------HHHH--H--HHHHhhhcCCeEE-cceE
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---KHFD-----------QEMV--R--ILLSSLTKAGVSI-QCCV 302 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---~~~~-----------~~~~--~--~~~~~l~~~gV~i-~~~~ 302 (535)
+|+|||||+.|+.+|..|++.+.+|+++++ +... .... .... . .+.+.+...++++ .+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999976 4211 1000 0111 1 3344456789999 9999
Q ss_pred EEEEEEeCCCc-----EEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 303 IEKVISSFDGM-----KGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 303 v~~i~~~~~~~-----~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
+.+++.. .+. ..+.... .++..++.+|.+++|+|..|+...+
T Consensus 81 v~~i~~~-~~~~~~~~~~~~~~~--~~~~~~~~~d~lviAtG~~~~~~~i 127 (201)
T PF07992_consen 81 VVSIDPE-SKRVVCPAVTIQVVE--TGDGREIKYDYLVIATGSRPRTPNI 127 (201)
T ss_dssp EEEEEES-TTEEEETCEEEEEEE--TTTEEEEEEEEEEEESTEEEEEESS
T ss_pred ccccccc-ccccccCcccceeec--cCCceEecCCeeeecCccccceeec
Confidence 9999875 342 1222221 4445589999999999999876644
No 129
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.00 E-value=3e-05 Score=79.98 Aligned_cols=99 Identities=19% Similarity=0.199 Sum_probs=75.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcC-Cc-cC---------cHHHHHHHHHhhhcCC-eEEcceEEEE
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRL-LK-HF---------DQEMVRILLSSLTKAG-VSIQCCVIEK 305 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~-l~-~~---------~~~~~~~~~~~l~~~g-V~i~~~~v~~ 305 (535)
.++|||||||+.|+.+|..|.+.- .+||+|++ +.. +. .+ +.++...+.+.++..+ |++...+|++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ 82 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTD 82 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEEE
Confidence 578999999999999999999874 89999998 443 22 21 2445556777777555 8886678999
Q ss_pred EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
|+.+ ..+|++. ++. .+++|.+++|+|..++....
T Consensus 83 ID~~---~k~V~~~---~~~--~i~YD~LVvalGs~~~~fgi 116 (405)
T COG1252 83 IDRD---AKKVTLA---DLG--EISYDYLVVALGSETNYFGI 116 (405)
T ss_pred Eccc---CCEEEeC---CCc--cccccEEEEecCCcCCcCCC
Confidence 9864 2456664 444 79999999999999987654
No 130
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.99 E-value=4.8e-05 Score=79.29 Aligned_cols=96 Identities=9% Similarity=0.139 Sum_probs=69.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCC---ccCc---------HHHHH-HHHHhhhcCCeEE-cceEEE
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLL---KHFD---------QEMVR-ILLSSLTKAGVSI-QCCVIE 304 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l---~~~~---------~~~~~-~~~~~l~~~gV~i-~~~~v~ 304 (535)
++++|||||+.|+.+|..|++.+ .+||++.+ +... +.+. .++.. ...+.+++.||++ .+++|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 58999999999999999998864 58999987 4321 2221 12211 1234456779999 999999
Q ss_pred EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461 305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346 (535)
Q Consensus 305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~ 346 (535)
+++.+ . ..|.+ +|+ ++++|.+++|||.+|....
T Consensus 83 ~id~~--~-~~v~~----~~~--~~~yd~LVlATG~~~~~p~ 115 (377)
T PRK04965 83 DIDAE--A-QVVKS----QGN--QWQYDKLVLATGASAFVPP 115 (377)
T ss_pred EEECC--C-CEEEE----CCe--EEeCCEEEECCCCCCCCCC
Confidence 99864 2 24444 455 7999999999999987544
No 131
>PRK10824 glutaredoxin-4; Provisional
Probab=97.98 E-value=2.4e-05 Score=66.27 Aligned_cols=64 Identities=28% Similarity=0.259 Sum_probs=51.9
Q ss_pred ChhHHHHhhhcCCcEEEEeCC-----CchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461 46 TPPAYISRLSYENRILIFTHA-----VLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD 114 (535)
Q Consensus 46 ~l~~~~~~~i~~~~v~v~~k~-----~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V 114 (535)
....+++.+|++++|++|+|+ +|| ||.++++++.+.+.++.++++. .. + .+..++...++..+|
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cp-yc~~ak~lL~~~~i~~~~idi~--~d-~-~~~~~l~~~sg~~TV 71 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCG-FSAQAVQALSACGERFAYVDIL--QN-P-DIRAELPKYANWPTF 71 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCc-hHHHHHHHHHHcCCCceEEEec--CC-H-HHHHHHHHHhCCCCC
Confidence 457789999999999999995 999 9999999999999887666554 22 3 488888887766554
No 132
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.97 E-value=6.4e-05 Score=80.17 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=65.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCcc------------------------------------Cc------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKH------------------------------------FD------ 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~------------------------------------~~------ 280 (535)
.|+|||||+.|+.+|..++++|.+|++++++.+... ++
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 83 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKLLQ 83 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHHHH
Confidence 599999999999999999999999999987322110 00
Q ss_pred ------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461 281 ------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346 (535)
Q Consensus 281 ------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~ 346 (535)
.++.+.+++.+++.||++ .+ ++..++. ..+.+. .+|+ ++.+|.+|+|||.+|+...
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~---~~v~v~----~~g~--~~~~d~lIiATGs~p~~p~ 146 (446)
T TIGR01424 84 KKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP---NTVEVL----QDGT--TYTAKKILIAVGGRPQKPN 146 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC---CEEEEe----cCCe--EEEcCEEEEecCCcCCCCC
Confidence 112334455677789999 55 5555542 223332 2565 7999999999999997544
No 133
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.97 E-value=8.2e-05 Score=81.49 Aligned_cols=98 Identities=9% Similarity=0.018 Sum_probs=72.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCC------------cc----CcHHHHHHHHHhhhcCCeEEcceEEEE
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLL------------KH----FDQEMVRILLSSLTKAGVSIQCCVIEK 305 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l------------~~----~~~~~~~~~~~~l~~~gV~i~~~~v~~ 305 (535)
-.|+|||||+.|+.+|..|++.|.+|+++++..+. +. ..+++.+.+.+.+++.|+++.+..+..
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~V~~ 84 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAEVLD 84 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccEEEE
Confidence 36999999999999999999999999999972211 11 124566777777888899995567888
Q ss_pred EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461 306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346 (535)
Q Consensus 306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~ 346 (535)
++.. +....|... +| .+.+|.+|+|+|..|....
T Consensus 85 i~~~-~~~~~V~~~---~g---~~~a~~lVlATGa~p~~~~ 118 (555)
T TIGR03143 85 VDFD-GDIKTIKTA---RG---DYKTLAVLIATGASPRKLG 118 (555)
T ss_pred EEec-CCEEEEEec---CC---EEEEeEEEECCCCccCCCC
Confidence 8764 233445542 44 5889999999999987643
No 134
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.96 E-value=3.4e-05 Score=79.96 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=69.8
Q ss_pred cEEEECCChHHHHHHHHHHhC---CCcEEEEEc-CcCC--ccC---------cHHHHHHHHHhhhcCCeEEcceEEEEEE
Q psy14461 243 KTLVLGGSLMAVEIAATLNFL---GVPVTLVYS-RRLL--KHF---------DQEMVRILLSSLTKAGVSIQCCVIEKVI 307 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~---g~~Vtlv~~-~~~l--~~~---------~~~~~~~~~~~l~~~gV~i~~~~v~~i~ 307 (535)
+|||||||+.|+.+|..|+++ +.+|+++++ +... +.+ ..++...+.+.+++.||++...++++|+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id 80 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID 80 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence 589999999999999999644 579999998 4321 211 1233334456677789999334789998
Q ss_pred EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
.+ + ..|.+. +|+ ++++|.+|+|+|.+|+...+
T Consensus 81 ~~--~-~~V~~~---~g~--~~~yD~LviAtG~~~~~~~i 112 (364)
T TIGR03169 81 PD--R-RKVLLA---NRP--PLSYDVLSLDVGSTTPLSGV 112 (364)
T ss_pred cc--c-CEEEEC---CCC--cccccEEEEccCCCCCCCCC
Confidence 64 2 256663 676 69999999999999986544
No 135
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.94 E-value=4.1e-05 Score=87.36 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=64.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------cc--CcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------KH--FDQEMVRILLSSLTKAGVSI-QCCVIEKVISS 309 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~~--~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~ 309 (535)
+++|+|||||+.|+.+|..|++.|.+|+++++ +.+. |. ++.+....-.+.+++.||++ .++.+ .+.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~-- 615 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT-- 615 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE--
Confidence 47899999999999999999999999999998 6542 21 24455555556677889999 88776 222
Q ss_pred CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
++ +.. ...+|.||+|||..+.
T Consensus 616 --------le---~L~--~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 616 --------VE---QLK--NEGYDYVVVAIGADKN 636 (1019)
T ss_pred --------hh---hhe--eccCCEEEECcCCCCC
Confidence 11 222 4568999999999854
No 136
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.94 E-value=4.4e-05 Score=87.05 Aligned_cols=98 Identities=10% Similarity=0.135 Sum_probs=71.2
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCcEEEEEc-CcCC--c-cCc--------HHHHHHHHHhhhcCCeEE-cceEEE
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFL----GVPVTLVYS-RRLL--K-HFD--------QEMVRILLSSLTKAGVSI-QCCVIE 304 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~-~~~l--~-~~~--------~~~~~~~~~~l~~~gV~i-~~~~v~ 304 (535)
++|||||+|+.|+.+|..|+++ +.+||++++ +++. + .+. +++.....+.+++.||++ .+..+.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 5899999999999999999765 468999988 5432 1 111 122222244567789999 999999
Q ss_pred EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
+|+.. ...|.+ .+|+ ++++|.+|+|||.+|....+
T Consensus 84 ~Id~~---~~~V~~---~~G~--~i~yD~LVIATGs~p~~p~i 118 (847)
T PRK14989 84 TINRQ---EKVIHS---SAGR--TVFYDKLIMATGSYPWIPPI 118 (847)
T ss_pred EEeCC---CcEEEE---CCCc--EEECCEEEECCCCCcCCCCC
Confidence 99753 234555 3676 79999999999999876543
No 137
>PRK08244 hypothetical protein; Provisional
Probab=97.94 E-value=9.8e-05 Score=79.84 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=72.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----C------------------------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----F------------------------------------ 279 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----~------------------------------------ 279 (535)
-.|+|||||++|+-+|..|++.|.+|+|+++ +.+.+. +
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 3699999999999999999999999999997 432110 0
Q ss_pred ----------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 280 ----------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 280 ----------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
...+.+.+.+.+++.|+++ .++++++++.+ ++.+.+++.+ .+| ..++.+|+||.|.|..+
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~~-~~g-~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQD-GDGVEVVVRG-PDG-LRTLTSSYVVGADGAGS 159 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEc-CCeEEEEEEe-CCc-cEEEEeCEEEECCCCCh
Confidence 0123344555566779999 99999999876 4566777653 235 24799999999999765
No 138
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.93 E-value=0.00023 Score=76.82 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=36.2
Q ss_pred CCceEcCCCCCcCCCCEEEeCCcCC-CCC---Cc----HHHHHHHHHHHHHHHhC
Q psy14461 359 KSYVVCNEKDQTSVGNIFAVGGIVH-GKP---NN----ASMAAISARLIIERLYG 405 (535)
Q Consensus 359 ~G~i~vd~~~~T~~~~IyA~GD~~~-~~~---~~----~~~A~~~g~~aa~~i~g 405 (535)
.|.|.+|...||++||+||+|+++. +.. .+ ...|.-.|++|++++..
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred cCCEEECCCCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999962 111 12 23577889999999875
No 139
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.93 E-value=3.9e-05 Score=63.41 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=47.8
Q ss_pred HHHHhhhcCCcEEEEeC-----CCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461 49 AYISRLSYENRILIFTH-----AVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD 114 (535)
Q Consensus 49 ~~~~~~i~~~~v~v~~k-----~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V 114 (535)
.++..++++++|++|+| ++|| ||.++++++.+.+.++..+++ . ..++ +..++...++..+|
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp-~C~~ak~lL~~~~i~~~~~di--~-~~~~-~~~~l~~~tg~~tv 68 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCG-FSARAVQILKACGVPFAYVNV--L-EDPE-IRQGIKEYSNWPTI 68 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCc-hHHHHHHHHHHcCCCEEEEEC--C-CCHH-HHHHHHHHhCCCCC
Confidence 57788999999999998 7899 999999999999988765544 3 3344 77778776665444
No 140
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.92 E-value=3.2e-05 Score=89.06 Aligned_cols=91 Identities=16% Similarity=0.125 Sum_probs=69.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---------cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---------HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS 308 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---------~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~ 308 (535)
.+++|+|||+|+.|+.+|..|++.|.+||++++ +.+.. .++.++.+...+.+++.||++ +++.+-.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence 468999999999999999999999999999998 65422 245677777778888899999 8875421
Q ss_pred eCCCcEEEEEecCCCCCceEEEcCEEEEccCCC-CCC
Q psy14461 309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK-FDF 344 (535)
Q Consensus 309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~-p~~ 344 (535)
.++++ +.. ...+|.|++|+|.. |..
T Consensus 382 ------dit~~---~l~--~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 382 ------TATLE---DLK--AAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred ------EEeHH---Hhc--cccCCEEEEeCCCCCCCc
Confidence 23332 333 45799999999984 553
No 141
>PRK06834 hypothetical protein; Provisional
Probab=97.92 E-value=0.00013 Score=78.70 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=73.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---c---cCc----------------------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---K---HFD---------------------------------- 280 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---~---~~~---------------------------------- 280 (535)
..|+|||+|++|+-+|..|++.|.+|+++++ +.+. + .+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 4699999999999999999999999999998 4321 1 000
Q ss_pred ----------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 281 ----------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 281 ----------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
..+.+.+.+.+++.|+++ .++++++++.+ ++.+.+++. +|+ ++.+|+||.|.|..+.
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~-~~~v~v~~~---~g~--~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQD-DTGVDVELS---DGR--TLRAQYLVGCDGGRSL 157 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCeEEEEEC---CCC--EEEeCEEEEecCCCCC
Confidence 112233445556679999 99999999876 456667663 565 7999999999998765
Q ss_pred C
Q psy14461 344 F 344 (535)
Q Consensus 344 ~ 344 (535)
.
T Consensus 158 v 158 (488)
T PRK06834 158 V 158 (488)
T ss_pred c
Confidence 4
No 142
>PRK06184 hypothetical protein; Provisional
Probab=97.91 E-value=0.00012 Score=79.22 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=71.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----Cc-----------------------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----FD----------------------------------- 280 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----~~----------------------------------- 280 (535)
-+|+|||||++|+-+|..|++.|.+|+++++ +.+.+. +.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 3699999999999999999999999999988 533110 00
Q ss_pred -------------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEE
Q psy14461 281 -------------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTV 334 (535)
Q Consensus 281 -------------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~v 334 (535)
..+.+.+.+.+.+.|+++ .++++++++.+ ++.+.+++....+++ ++.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~-~~~v~v~~~~~~~~~--~i~a~~v 160 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQD-ADGVTARVAGPAGEE--TVRARYL 160 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEc-CCcEEEEEEeCCCeE--EEEeCEE
Confidence 011233455566679999 99999999876 455667664322333 7999999
Q ss_pred EEccCCC
Q psy14461 335 VNAMEKK 341 (535)
Q Consensus 335 i~a~G~~ 341 (535)
|.|.|..
T Consensus 161 VgADG~~ 167 (502)
T PRK06184 161 VGADGGR 167 (502)
T ss_pred EECCCCc
Confidence 9999965
No 143
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.89 E-value=0.00013 Score=77.06 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=71.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC----c---cCc--------------------------------
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL----K---HFD-------------------------------- 280 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l----~---~~~-------------------------------- 280 (535)
..+|+|||||+.|+-+|..|++.|.+|+|+++ +.+. + .+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 35799999999999999999999999999998 4321 0 000
Q ss_pred -----------------------HHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEE
Q psy14461 281 -----------------------QEMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV 335 (535)
Q Consensus 281 -----------------------~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi 335 (535)
..+.+.+.+.+.+ .+|++ .++++++++.+ ++.+.|++++ +++..++.+|+||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~-~~~~~v~~~~--~~~~~~i~adlvI 174 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQ-QDAATVTLEI--EGKQQTLQSKLVV 174 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CCeeEEEEcc--CCcceEEeeeEEE
Confidence 1111222333333 37999 89999999776 4566777752 3433479999999
Q ss_pred EccCCCCCC
Q psy14461 336 NAMEKKFDF 344 (535)
Q Consensus 336 ~a~G~~p~~ 344 (535)
.|.|.....
T Consensus 175 gADG~~S~v 183 (415)
T PRK07364 175 AADGARSPI 183 (415)
T ss_pred EeCCCCchh
Confidence 999987755
No 144
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.88 E-value=0.00013 Score=76.41 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=73.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-----c-----cCc-----------------------------
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-----K-----HFD----------------------------- 280 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-----~-----~~~----------------------------- 280 (535)
..+|+|||||+.|+-+|..|++.|.+|+++++ +.+- + .+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 35799999999999999999999999999998 4210 0 000
Q ss_pred ---------------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461 281 ---------------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK 332 (535)
Q Consensus 281 ---------------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D 332 (535)
..+.+.+.+.+++.|+++ .++++++++.+ ++.+.|++. +|+ ++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~a~ 159 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRVRLRLD---DGR--RLEAA 159 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeEEEEEC---CCC--EEEeC
Confidence 112233444556679999 99999999876 455667663 676 79999
Q ss_pred EEEEccCCCCCCC
Q psy14461 333 TVVNAMEKKFDFA 345 (535)
Q Consensus 333 ~vi~a~G~~p~~~ 345 (535)
.||.|.|..++..
T Consensus 160 ~vV~AdG~~S~vr 172 (392)
T PRK08773 160 LAIAADGAASTLR 172 (392)
T ss_pred EEEEecCCCchHH
Confidence 9999999988643
No 145
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.88 E-value=0.00012 Score=77.83 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=62.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-------Cc--------------HHH-----------HHHHHH
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-------FD--------------QEM-----------VRILLS 289 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-------~~--------------~~~-----------~~~~~~ 289 (535)
+|+|||||+.|+.+|..++++|.+|+++++ +.++.. .+ +++ .....+
T Consensus 5 dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (438)
T PRK07251 5 DLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNYA 84 (438)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999998 532110 00 111 111223
Q ss_pred hhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461 290 SLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346 (535)
Q Consensus 290 ~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~ 346 (535)
.+.+.||++ .+.. ..++ +. +|++.. .+...++.+|.+|+|||.+|+...
T Consensus 85 ~~~~~gV~~~~g~~-~~~~---~~--~v~v~~--~~~~~~~~~d~vViATGs~~~~p~ 134 (438)
T PRK07251 85 MLAGSGVDLYDAEA-HFVS---NK--VIEVQA--GDEKIELTAETIVINTGAVSNVLP 134 (438)
T ss_pred HHHhCCCEEEEEEE-EEcc---CC--EEEEee--CCCcEEEEcCEEEEeCCCCCCCCC
Confidence 456678888 5442 2221 22 344431 222347999999999999987644
No 146
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.88 E-value=0.00014 Score=74.92 Aligned_cols=92 Identities=22% Similarity=0.264 Sum_probs=65.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc--CcCCc-----c-------------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS--RRLLK-----H------------------------------------- 278 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~--~~~l~-----~------------------------------------- 278 (535)
+|+|||||..|+|+|..+++.|.+|.++.. +.+.. .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 489999999999999999999999999954 33211 0
Q ss_pred -----------Cc-HHHHHHHHHhhhc-CCeEEcceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCC
Q psy14461 279 -----------FD-QEMVRILLSSLTK-AGVSIQCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEK 340 (535)
Q Consensus 279 -----------~~-~~~~~~~~~~l~~-~gV~i~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~ 340 (535)
.| ..+.+.+++.+++ .++++...+|+++..+ ++++ .|.+ .+|+ .+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e-~~~v~GV~~---~~g~--~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVE-NGKVKGVVT---KDGE--EIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEEC-TTEEEEEEE---TTSE--EEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEec-CCeEEEEEe---CCCC--EEecCEEEEeccc
Confidence 01 2344556666665 6899955689999876 4554 3555 4787 8999999999998
No 147
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.88 E-value=2.5e-05 Score=83.22 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=68.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS 308 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~ 308 (535)
.+++|+|||+|+.|+.+|..|++.|.+|+++++ +.+. + .+++++.....+.+++.||++ .+..+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~---- 207 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG---- 207 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC----
Confidence 357899999999999999999999999999998 6541 2 245677777777788899999 887441
Q ss_pred eCCCcEEEEEecCCCCCceEEEcCEEEEccCC-CCCCC
Q psy14461 309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEK-KFDFA 345 (535)
Q Consensus 309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~-~p~~~ 345 (535)
..+.+. +. ...+|.||+|+|. .|...
T Consensus 208 -----~~v~~~---~~---~~~yd~viiAtGa~~p~~~ 234 (449)
T TIGR01316 208 -----KTATLE---EL---FSQYDAVFIGTGAGLPKLM 234 (449)
T ss_pred -----CcCCHH---HH---HhhCCEEEEeCCCCCCCcC
Confidence 113331 22 2468999999997 56543
No 148
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.85 E-value=0.00017 Score=75.50 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=71.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc------------------C-c--------------------
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------------------F-D-------------------- 280 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------------------~-~-------------------- 280 (535)
+.+|+|||||..|+-+|..|++.|.+|+++++ +.+... + +
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 56899999999999999999999999999998 532110 0 0
Q ss_pred -------------------------HHHHHHHHHhhhcC-CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCE
Q psy14461 281 -------------------------QEMVRILLSSLTKA-GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKT 333 (535)
Q Consensus 281 -------------------------~~~~~~~~~~l~~~-gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~ 333 (535)
.++.+.+.+.+.+. ++++ .++.+++++.+ ++.+.+++. +|+ ++.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~ad~ 157 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGVTVFDQ---QGN--RWTGDA 157 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCceEEEEc---CCC--EEecCE
Confidence 01112233333344 4899 99999999865 455666663 676 799999
Q ss_pred EEEccCCCCCC
Q psy14461 334 VVNAMEKKFDF 344 (535)
Q Consensus 334 vi~a~G~~p~~ 344 (535)
||.|.|.....
T Consensus 158 vV~AdG~~S~~ 168 (396)
T PRK08163 158 LIGCDGVKSVV 168 (396)
T ss_pred EEECCCcChHH
Confidence 99999987655
No 149
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.84 E-value=3.6e-05 Score=82.34 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=68.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEE
Q psy14461 239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVI 307 (535)
Q Consensus 239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~ 307 (535)
..+++|+|||||+.|+++|..|++.|.+|+++++ +.+. | ..+.++.....+.+++.||++ .++.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-- 215 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-- 215 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC--
Confidence 4568999999999999999999999999999998 6542 2 135677777778888899999 8876521
Q ss_pred EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC-CC
Q psy14461 308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK-FD 343 (535)
Q Consensus 308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~-p~ 343 (535)
.+++. +. .+.+|.|++|+|.. |.
T Consensus 216 -------~v~~~---~~---~~~~d~vvlAtGa~~~~ 239 (457)
T PRK11749 216 -------DITLD---EL---RAGYDAVFIGTGAGLPR 239 (457)
T ss_pred -------ccCHH---HH---HhhCCEEEEccCCCCCC
Confidence 12221 22 36799999999985 44
No 150
>PLN02463 lycopene beta cyclase
Probab=97.83 E-value=0.00016 Score=76.76 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=71.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC-Ccc-C---------------------------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL-LKH-F--------------------------------------- 279 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~-l~~-~--------------------------------------- 279 (535)
-+|+|||||+.|+-+|..|++.|.+|.++++ +.. .|. .
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 3799999999999999999999999999987 421 111 0
Q ss_pred ----cHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 280 ----DQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 280 ----~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
..++.+.+.+.+.+.|+++...+|++|+.. ++...|++. +|+ ++++|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~-~~~~~V~~~---dG~--~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHE-ESKSLVVCD---DGV--KIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEc-CCeEEEEEC---CCC--EEEcCEEEECcCCCcC
Confidence 012224445555667899844688888876 455667763 676 7999999999998764
No 151
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.82 E-value=0.002 Score=65.79 Aligned_cols=57 Identities=19% Similarity=0.136 Sum_probs=43.2
Q ss_pred cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
...+.+.+.+.+++.|+++ .+++|++|..+ ++.+. |.+. +| .+.+|.||+|+|...+
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~---~g---~i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTS---DG---EIRADRVVLAAGAWSP 204 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEET---TE---EEEECEEEE--GGGHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhc-cccccccccc---cc---ccccceeEecccccce
Confidence 4667788888888899999 99999999987 56665 7773 55 4999999999997543
No 152
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.82 E-value=0.00019 Score=75.28 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=71.9
Q ss_pred cEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCCcc-------C---------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLLKH-------F--------------------------------- 279 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l~~-------~--------------------------------- 279 (535)
+|+|||||+.|+-+|..|++.| .+|+++++ +...+. +
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5999999999999999999995 89999997 431100 0
Q ss_pred ---------------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEc
Q psy14461 280 ---------------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVF 331 (535)
Q Consensus 280 ---------------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~ 331 (535)
..++.+.+.+.+.+.|+++ .++++++++.+ ++.+.|++. +|+ ++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~a 156 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETR-DEGVTVTLS---DGS--VLEA 156 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEEEEEEC---CCC--EEEe
Confidence 0122344455566679999 99999999876 455667763 676 7999
Q ss_pred CEEEEccCCCCCC
Q psy14461 332 KTVVNAMEKKFDF 344 (535)
Q Consensus 332 D~vi~a~G~~p~~ 344 (535)
|+||.|.|..+..
T Consensus 157 d~vI~AdG~~S~v 169 (403)
T PRK07333 157 RLLVAADGARSKL 169 (403)
T ss_pred CEEEEcCCCChHH
Confidence 9999999987654
No 153
>PRK07588 hypothetical protein; Provisional
Probab=97.82 E-value=0.00024 Score=74.35 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=70.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc----------------Cc-------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH----------------FD------------------------- 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~----------------~~------------------------- 280 (535)
+|+|||||+.|+-+|..|++.|.+|+++++ +.+-+. ++
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 699999999999999999999999999997 432110 00
Q ss_pred ---------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEcc
Q psy14461 281 ---------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM 338 (535)
Q Consensus 281 ---------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~ 338 (535)
.++.+.+.+.+ ..++++ .++++++++.+ ++.+.|+++ +|+ ++++|+||-|.
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~~d~vIgAD 154 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEH-RDGVRVTFE---RGT--PRDFDLVIGAD 154 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEEC-CCeEEEEEC---CCC--EEEeCEEEECC
Confidence 00111122222 346999 99999999876 456777774 677 68999999999
Q ss_pred CCCCCCCC
Q psy14461 339 EKKFDFAA 346 (535)
Q Consensus 339 G~~p~~~~ 346 (535)
|.......
T Consensus 155 G~~S~vR~ 162 (391)
T PRK07588 155 GLHSHVRR 162 (391)
T ss_pred CCCccchh
Confidence 98776643
No 154
>KOG1399|consensus
Probab=97.82 E-value=0.00037 Score=73.42 Aligned_cols=107 Identities=15% Similarity=0.083 Sum_probs=77.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC---------------------------------------
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF--------------------------------------- 279 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~--------------------------------------- 279 (535)
.+++|+|||+|++|+-.|..|.+.|.+|++++| +.+...+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 368999999999999999999999999999998 6442100
Q ss_pred ---c-HHHHHHHHHhhhcCCe--EE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC--CCCCCC
Q psy14461 280 ---D-QEMVRILLSSLTKAGV--SI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK--FDFAAL 347 (535)
Q Consensus 280 ---~-~~~~~~~~~~l~~~gV--~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~--p~~~~l 347 (535)
. .++.++++...+.-++ .+ .++.+.+++...+++..|...+...+ ..+.-+|.|++|+|.- |+.+..
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~-~~~~ifd~VvVctGh~~~P~~P~~ 160 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ-IEEEIFDAVVVCTGHYVEPRIPQI 160 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc-eeEEEeeEEEEcccCcCCCCCCcC
Confidence 0 2566677777666665 45 77777888776226788888642121 2477899999999987 555543
No 155
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.81 E-value=9.2e-05 Score=84.28 Aligned_cols=96 Identities=8% Similarity=0.054 Sum_probs=70.3
Q ss_pred EEEECCChHHHHHHHHHHhCC---CcEEEEEc-CcCC--c-cCc---------HHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461 244 TLVLGGSLMAVEIAATLNFLG---VPVTLVYS-RRLL--K-HFD---------QEMVRILLSSLTKAGVSI-QCCVIEKV 306 (535)
Q Consensus 244 vvViGgG~~g~e~A~~l~~~g---~~Vtlv~~-~~~l--~-~~~---------~~~~~~~~~~l~~~gV~i-~~~~v~~i 306 (535)
|||||+|+.|+.+|..|++++ .+||++++ +.+. + .+. +++.....+.+++.||++ .++.|++|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 689999999999999998764 58999998 5531 1 111 122222345567789999 99999999
Q ss_pred EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
+.. ...|.+. +|+ ++++|.+|+|||..|+...+
T Consensus 81 d~~---~k~V~~~---~g~--~~~yD~LVlATGs~p~~p~i 113 (785)
T TIGR02374 81 DTD---QKQVITD---AGR--TLSYDKLILATGSYPFILPI 113 (785)
T ss_pred ECC---CCEEEEC---CCc--EeeCCEEEECCCCCcCCCCC
Confidence 864 2345553 676 79999999999999876543
No 156
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.81 E-value=0.00022 Score=77.92 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=72.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-----cC-----------------------------------
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-----HF----------------------------------- 279 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-----~~----------------------------------- 279 (535)
..+|+|||+|++|+-+|..|++.|.+|+++++ +.+.+ .+
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 35799999999999999999999999999998 53211 00
Q ss_pred -----c-----------------HHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEE
Q psy14461 280 -----D-----------------QEMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV 335 (535)
Q Consensus 280 -----~-----------------~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi 335 (535)
+ +++.+.+.+.+.+ .|+++ .++++++++.+ ++.+++++++ .+|++.++.+|+||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~-~~~v~v~~~~-~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQD-DDGVTVTLTD-ADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEc-CCeEEEEEEc-CCCCEEEEEEEEEE
Confidence 0 0111223333434 48999 99999999876 4667777753 25755689999999
Q ss_pred EccCCCC
Q psy14461 336 NAMEKKF 342 (535)
Q Consensus 336 ~a~G~~p 342 (535)
-|.|...
T Consensus 168 gADG~~S 174 (538)
T PRK06183 168 GCDGANS 174 (538)
T ss_pred ecCCCch
Confidence 9999654
No 157
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.80 E-value=0.00018 Score=77.08 Aligned_cols=97 Identities=15% Similarity=0.035 Sum_probs=66.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc------CcH-------------------------------H-
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------FDQ-------------------------------E- 282 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------~~~-------------------------------~- 282 (535)
-.|+|||||+.|+.+|..|+++|.+|+++++ +.+... .+. +
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL 85 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence 4699999999999999999999999999998 543210 000 0
Q ss_pred ----------HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461 283 ----------MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA 345 (535)
Q Consensus 283 ----------~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~ 345 (535)
..+.+.+.+++.||++ .+. +..++ .+.+.|.. .+|+..++.+|.+|+|||.+|...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~---~~~~~v~~---~~g~~~~~~~d~lviATGs~p~~p 152 (461)
T PRK05249 86 LARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD---PHTVEVEC---PDGEVETLTADKIVIATGSRPYRP 152 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec---CCEEEEEe---CCCceEEEEcCEEEEcCCCCCCCC
Confidence 0112334456678888 553 33332 23455554 256545799999999999998754
No 158
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.80 E-value=4.5e-05 Score=81.71 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=68.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS 308 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~ 308 (535)
.+++|+|||+|++|+.+|..|++.|.+|+++++ +.+. | .+++++.....+.+++.|+++ .++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 458999999999999999999999999999998 6542 2 246667677777888999999 88866310
Q ss_pred eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461 309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF 344 (535)
Q Consensus 309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~ 344 (535)
+.+ ++. ...+|.||+|+|..+..
T Consensus 218 -------~~~----~~~--~~~~D~vilAtGa~~~~ 240 (467)
T TIGR01318 218 -------ISL----DDL--LEDYDAVFLGVGTYRSM 240 (467)
T ss_pred -------cCH----HHH--HhcCCEEEEEeCCCCCC
Confidence 112 111 34699999999998753
No 159
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00079 Score=67.63 Aligned_cols=99 Identities=18% Similarity=0.106 Sum_probs=72.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCc-EEEEEcCcCC------------c-----cCcHHHHHHHHHhhhcCCeEEcceEE
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVP-VTLVYSRRLL------------K-----HFDQEMVRILLSSLTKAGVSIQCCVI 303 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~l------------~-----~~~~~~~~~~~~~l~~~gV~i~~~~v 303 (535)
-+|+|||||+.|+-+|.++.|.+.+ +.|++...+. | ...+++.+.+.+..+..++++....+
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~~v 83 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVEDEV 83 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEEEE
Confidence 3699999999999999999999988 5555442111 1 13467777778877888999933778
Q ss_pred EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
.+++.. ++.+.|++. +| +++++.||+|+|..+....+
T Consensus 84 ~~v~~~-~~~F~v~t~---~~---~~~ak~vIiAtG~~~~~~~~ 120 (305)
T COG0492 84 EKVELE-GGPFKVKTD---KG---TYEAKAVIIATGAGARKLGV 120 (305)
T ss_pred EEEeec-CceEEEEEC---CC---eEEEeEEEECcCCcccCCCC
Confidence 888764 225666662 55 39999999999988765443
No 160
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.79 E-value=0.00028 Score=74.08 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=71.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc----------------C--c----------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH----------------F--D---------------------- 280 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~----------------~--~---------------------- 280 (535)
++|+|||||..|+-+|..|++.|.+|+++++ +.+... + .
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 7899999999999999999999999999998 532100 0 0
Q ss_pred ------------------------HHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEE
Q psy14461 281 ------------------------QEMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTV 334 (535)
Q Consensus 281 ------------------------~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~v 334 (535)
.++.+.+.+.+.+ .++++ .++++++++.+ ++.+.+++....+++ ++++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~-~~~v~v~~~~~~~~~--~~~adlv 159 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQT-GNSITATIIRTNSVE--TVSAAYL 159 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecC-CCceEEEEEeCCCCc--EEecCEE
Confidence 0111223333333 47899 99999999765 456777765322334 7899999
Q ss_pred EEccCCCCCCC
Q psy14461 335 VNAMEKKFDFA 345 (535)
Q Consensus 335 i~a~G~~p~~~ 345 (535)
|-|-|......
T Consensus 160 IgADG~~S~vR 170 (400)
T PRK06475 160 IACDGVWSMLR 170 (400)
T ss_pred EECCCccHhHH
Confidence 99999876543
No 161
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.78 E-value=0.00029 Score=73.70 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=75.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-C-cCCcc-----C-----------c-----------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R-RLLKH-----F-----------D----------------------- 280 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~-~~l~~-----~-----------~----------------------- 280 (535)
.+|+|||||++|+-+|..|++.|.+|+|+++ + .+.+. + +
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR 82 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCCc
Confidence 5799999999999999999999999999998 3 22110 0 0
Q ss_pred ---------------------HHHHHHHHHhhhcCC-eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461 281 ---------------------QEMVRILLSSLTKAG-VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA 337 (535)
Q Consensus 281 ---------------------~~~~~~~~~~l~~~g-V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a 337 (535)
.++.+.+.+.+.+.+ |++ .+++|+.++.+ ++.+.+++.. +|+ ++++|++|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~v~l~~--dG~--~~~a~llVgA 157 (387)
T COG0654 83 RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVTVTLSF--DGE--TLDADLLVGA 157 (387)
T ss_pred eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceEEEEcC--CCc--EEecCEEEEC
Confidence 234455566666555 999 99999999987 4666777742 777 8999999999
Q ss_pred cCCCCCC
Q psy14461 338 MEKKFDF 344 (535)
Q Consensus 338 ~G~~p~~ 344 (535)
-|.....
T Consensus 158 DG~~S~v 164 (387)
T COG0654 158 DGANSAV 164 (387)
T ss_pred CCCchHH
Confidence 9976554
No 162
>KOG0399|consensus
Probab=97.78 E-value=0.00033 Score=78.18 Aligned_cols=185 Identities=15% Similarity=0.089 Sum_probs=115.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---------cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---------HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS 308 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---------~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~ 308 (535)
.+++|.|||+|+.|+-+|..|.+.|..|++.+| +++.. .+|+.+.++-.+.|.++||+| +|+.+-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 468999999999999999999999999999999 76532 357778888888999999999 88776321
Q ss_pred eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccc---cCeee-----cCCCceEcCC-----CCCcCCCCE
Q psy14461 309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHH---IGVDI-----KKKSYVVCNE-----KDQTSVGNI 375 (535)
Q Consensus 309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~---~gl~~-----~~~G~i~vd~-----~~~T~~~~I 375 (535)
+.+ |+- .-+.|+|++|+|..-.-++- .+. .|+.. ..+-.-..|. +....-+.|
T Consensus 1862 -------vs~----d~l--~~~~daiv~a~gst~prdlp-v~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkv 1927 (2142)
T KOG0399|consen 1862 -------VSL----DEL--KKENDAIVLATGSTTPRDLP-VPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKV 1927 (2142)
T ss_pred -------ccH----HHH--hhccCeEEEEeCCCCCcCCC-CCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeE
Confidence 222 222 34679999999976443321 111 11110 0000011121 122233556
Q ss_pred EEeCCcCCCCCCcHHHHHHHHHHHHHHH--hCCCCCCCCCCCCcEEEEcCCceeeecCCHHHHHHhcCCCC
Q psy14461 376 FAVGGIVHGKPNNASMAAISARLIIERL--YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADG 444 (535)
Q Consensus 376 yA~GD~~~~~~~~~~~A~~~g~~aa~~i--~g~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~~~~~~ 444 (535)
.++|--- .+..-.-..+++|.....|+ +-.+ ++......||-.| |.+-+|-+.-+||++.||.+.
T Consensus 1928 ivigggd-tg~dcigtsvrhg~~sv~n~ellp~p-p~~ra~~npwpqw--prvfrvdygh~e~~~~~g~dp 1994 (2142)
T KOG0399|consen 1928 IVIGGGD-TGTDCIGTSVRHGCKSVGNFELLPQP-PPERAPDNPWPQW--PRVFRVDYGHAEAKEHYGSDP 1994 (2142)
T ss_pred EEECCCC-ccccccccchhhccceecceeecCCC-CcccCCCCCCccC--ceEEEeecchHHHHHHhCCCc
Confidence 6665322 12222335677776655554 2222 2222334678777 888889999999999988643
No 163
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.78 E-value=0.00021 Score=76.83 Aligned_cols=99 Identities=16% Similarity=0.118 Sum_probs=65.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCC---------c---------------------------cCc-HH--
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLL---------K---------------------------HFD-QE-- 282 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l---------~---------------------------~~~-~~-- 282 (535)
-+|+|||||+.|+.+|..++++|.+|+++++..+. | ..+ +.
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 84 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAKVQ 84 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHHHH
Confidence 47999999999999999999999999999973210 0 000 00
Q ss_pred ---------HHHHHHHhhhcCCeEE-cceEEEEEEEe----CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461 283 ---------MVRILLSSLTKAGVSI-QCCVIEKVISS----FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF 344 (535)
Q Consensus 283 ---------~~~~~~~~l~~~gV~i-~~~~v~~i~~~----~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~ 344 (535)
+.+...+.+++.||++ .+ .++.++.. .++.+.|.+. +|+..++.+|.+++|||.+|+.
T Consensus 85 ~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~---~g~~~~~~~d~lViATGs~p~~ 156 (472)
T PRK05976 85 ERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETE---TGENEMIIPENLLIATGSRPVE 156 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeC---CCceEEEEcCEEEEeCCCCCCC
Confidence 1112234456778999 54 44545421 0124556553 5644479999999999999964
No 164
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.77 E-value=0.00015 Score=76.23 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=71.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-Cc----------CCc---cCc---------------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RR----------LLK---HFD--------------------------- 280 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~----------~l~---~~~--------------------------- 280 (535)
.+|+|||||+.|+-+|..|++.|.+|+++++ +. ..+ .+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 3699999999999999999999999999998 51 000 000
Q ss_pred -----------------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEE
Q psy14461 281 -----------------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADV 330 (535)
Q Consensus 281 -----------------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~ 330 (535)
..+.+.+.+.+++.|+++ .++++++++.+ ++.+.|++. +|+ ++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~ 156 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRS-GDDWLLTLA---DGR--QLR 156 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEc-CCeEEEEEC---CCC--EEE
Confidence 011122334455668999 99999999876 455667763 676 799
Q ss_pred cCEEEEccCCCCCCC
Q psy14461 331 FKTVVNAMEKKFDFA 345 (535)
Q Consensus 331 ~D~vi~a~G~~p~~~ 345 (535)
+|+||.|.|......
T Consensus 157 a~~vVgAdG~~S~vR 171 (405)
T PRK05714 157 APLVVAADGANSAVR 171 (405)
T ss_pred eCEEEEecCCCchhH
Confidence 999999999876543
No 165
>PRK05868 hypothetical protein; Validated
Probab=97.77 E-value=0.00029 Score=73.31 Aligned_cols=98 Identities=19% Similarity=0.070 Sum_probs=70.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---c--Cc-------------HHH-------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---H--FD-------------QEM------------------- 283 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---~--~~-------------~~~------------------- 283 (535)
++|+|||||+.|+.+|..|++.|.+|+++++ +.+.. . +. +.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 4799999999999999999999999999997 53311 0 00 000
Q ss_pred ----------------------HHHHHHhhh---cCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461 284 ----------------------VRILLSSLT---KAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA 337 (535)
Q Consensus 284 ----------------------~~~~~~~l~---~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a 337 (535)
...+.+.|. ..|+++ +++++++++.+ ++.++|+++ +|+ ++++|+||-|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~-~~~v~v~~~---dg~--~~~adlvIgA 155 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD-GDSVRVTFE---RAA--AREFDLVIGA 155 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec-CCeEEEEEC---CCC--eEEeCEEEEC
Confidence 011222222 357889 99999999765 566778874 677 7899999999
Q ss_pred cCCCCCCC
Q psy14461 338 MEKKFDFA 345 (535)
Q Consensus 338 ~G~~p~~~ 345 (535)
-|......
T Consensus 156 DG~~S~vR 163 (372)
T PRK05868 156 DGLHSNVR 163 (372)
T ss_pred CCCCchHH
Confidence 99877654
No 166
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.76 E-value=0.00015 Score=77.73 Aligned_cols=98 Identities=17% Similarity=0.111 Sum_probs=65.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcC---------Cc--c--------------------C--------c-H
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRL---------LK--H--------------------F--------D-Q 281 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---------l~--~--------------------~--------~-~ 281 (535)
++++|||+|+.|+++|..++++|.+|+++++..+ .| . . + +
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP 81 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence 5799999999999999999999999999997221 00 0 0 0 0
Q ss_pred H-----------HHHHHHHhhhcCCeEE-cceEEEEEE--EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461 282 E-----------MVRILLSSLTKAGVSI-QCCVIEKVI--SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF 344 (535)
Q Consensus 282 ~-----------~~~~~~~~l~~~gV~i-~~~~v~~i~--~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~ 344 (535)
. +.+.+.+.+++.||++ .+. +..++ .+ ...+.|.. .+|+.+++.+|.+|+|||.+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~-~~~v~V~~---~~g~~~~~~~d~lViATGs~p~~ 153 (466)
T PRK07845 82 AVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLG-PHRVKVTT---ADGGEETLDADVVLIATGASPRI 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccC-CCEEEEEe---CCCceEEEecCEEEEcCCCCCCC
Confidence 0 0123345566779999 553 33322 21 34455554 25654579999999999999974
No 167
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.75 E-value=0.0017 Score=67.96 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=43.9
Q ss_pred cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
...+.+.+.+.+++.|+++ .++.+.+++.. ++.+.|.+ .+| ++.+|.|++|+|...
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~~V~~---~~g---~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGVVVRT---TQG---EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeEEEEE---CCC---EEEeCEEEECCCcch
Confidence 4567778888888899999 99999999865 45555555 244 699999999999765
No 168
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.74 E-value=8.6e-05 Score=78.34 Aligned_cols=90 Identities=10% Similarity=0.021 Sum_probs=60.4
Q ss_pred CCCCcEEEECCChHHHHHHHHH-HhCCCcEEEEEc-CcCCcc-------Cc---HHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461 239 AWPGKTLVLGGSLMAVEIAATL-NFLGVPVTLVYS-RRLLKH-------FD---QEMVRILLSSLTKAGVSI-QCCVIEK 305 (535)
Q Consensus 239 ~~~k~vvViGgG~~g~e~A~~l-~~~g~~Vtlv~~-~~~l~~-------~~---~~~~~~~~~~l~~~gV~i-~~~~v~~ 305 (535)
..+++|+|||+|+.|+.+|..| ++.|.+|+++++ +.+... .. +.+...+...+...++++ .+..+-.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~ 116 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV 116 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC
Confidence 3578999999999999999965 467999999999 766431 11 234444555566677777 5444321
Q ss_pred EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
.++++ . ....+|.||+|+|..+.
T Consensus 117 ---------Dvt~e----e--L~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ---------DLKME----E--LRNHYNCVIFCCGASEV 139 (506)
T ss_pred ---------ccCHH----H--HHhcCCEEEEEcCCCCC
Confidence 11121 1 12378999999998754
No 169
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.73 E-value=0.001 Score=69.32 Aligned_cols=58 Identities=21% Similarity=0.136 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
.++...+.+.+.++|+++ ++++|+.|+...++...+.+ .+|+++ ++|+.||.|.|-..
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~---~~g~~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNT---SNGEET-LEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEe---cCCcEE-EEeeEEEECCchhH
Confidence 345666777777889999 99999999987444333444 477744 99999999999543
No 170
>PRK09126 hypothetical protein; Provisional
Probab=97.73 E-value=0.00039 Score=72.70 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=70.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---c-c------CcH-----------------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---K-H------FDQ----------------------------- 281 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---~-~------~~~----------------------------- 281 (535)
-+|+|||||+.|+-+|..|++.|.+|+|+++ +.+. + . +.+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 3699999999999999999999999999998 5310 0 0 000
Q ss_pred ---------------------------HHHHHHHHhh-hcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461 282 ---------------------------EMVRILLSSL-TKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK 332 (535)
Q Consensus 282 ---------------------------~~~~~~~~~l-~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D 332 (535)
.+.+.+.+.+ +..|+++ .++++++++.. ++.+.|++. +|+ ++.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~-~~~~~v~~~---~g~--~~~a~ 157 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTD-DDGAQVTLA---NGR--RLTAR 157 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEc-CCeEEEEEc---CCC--EEEeC
Confidence 0111122222 3468999 99999999765 455667763 676 79999
Q ss_pred EEEEccCCCCCCC
Q psy14461 333 TVVNAMEKKFDFA 345 (535)
Q Consensus 333 ~vi~a~G~~p~~~ 345 (535)
+||.|.|..+...
T Consensus 158 ~vI~AdG~~S~vr 170 (392)
T PRK09126 158 LLVAADSRFSATR 170 (392)
T ss_pred EEEEeCCCCchhh
Confidence 9999999987654
No 171
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.72 E-value=0.00019 Score=77.01 Aligned_cols=95 Identities=17% Similarity=0.047 Sum_probs=63.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc------Cc-------------------------------HHH
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------FD-------------------------------QEM 283 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------~~-------------------------------~~~ 283 (535)
-.|+|||+|+.|+.+|..++++|.+|+++++ +.+... .+ +.+
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDKM 84 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence 4699999999999999999999999999998 544210 00 011
Q ss_pred H-----------HHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 284 V-----------RILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 284 ~-----------~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
. +.+...+++.||++ .+. ..-++ ...+.|.. .+|+..++.+|.+|+|||.+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~~---~~~v~v~~---~~g~~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 85 RARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFTG---GNTLEVTG---EDGKTTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc---CCEEEEec---CCCceEEEEcCEEEEeCCCCCC
Confidence 1 11123355678888 553 22222 23344443 2564457999999999999986
No 172
>PRK12831 putative oxidoreductase; Provisional
Probab=97.71 E-value=7.5e-05 Score=79.92 Aligned_cols=93 Identities=20% Similarity=0.170 Sum_probs=66.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------cc--CcH-HHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461 239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------KH--FDQ-EMVRILLSSLTKAGVSI-QCCVIEKV 306 (535)
Q Consensus 239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~~--~~~-~~~~~~~~~l~~~gV~i-~~~~v~~i 306 (535)
..+++|+|||+|+.|+.+|..|+++|.+|+++++ +.+. |. ++. ++.....+.+++.||++ .++.+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~- 216 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK- 216 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC-
Confidence 3468999999999999999999999999999998 5431 11 222 35556667788889999 8875521
Q ss_pred EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC-CCCC
Q psy14461 307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK-KFDF 344 (535)
Q Consensus 307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~-~p~~ 344 (535)
.+.+. +.. ..+.+|.||+|+|. .|..
T Consensus 217 --------~v~~~---~~~-~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 --------TVTID---ELL-EEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred --------cCCHH---HHH-hccCCCEEEEeCCCCCCCC
Confidence 12221 221 14569999999997 5654
No 173
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.71 E-value=0.0001 Score=79.27 Aligned_cols=89 Identities=21% Similarity=0.205 Sum_probs=67.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS 308 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~ 308 (535)
.+++|+|||+|++|+++|..|++.|.+|+++++ +.+. | .+++++.....+.+++.||++ .++.+.. +
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c-
Confidence 347999999999999999999999999999998 6542 2 235566666667788899999 8887631 0
Q ss_pred eCCCcEEEEEecCCCCCceEEEcCEEEEccCCC-CC
Q psy14461 309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK-FD 343 (535)
Q Consensus 309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~-p~ 343 (535)
+.. ++ ....+|.|++|+|.. |.
T Consensus 220 -------~~~----~~--~~~~~d~VilAtGa~~~~ 242 (485)
T TIGR01317 220 -------ISA----DE--LKEQFDAVVLAGGATKPR 242 (485)
T ss_pred -------cCH----HH--HHhhCCEEEEccCCCCCC
Confidence 111 11 135799999999997 44
No 174
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.71 E-value=0.00047 Score=72.24 Aligned_cols=102 Identities=12% Similarity=-0.010 Sum_probs=73.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC--Ccc------------------C---------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL--LKH------------------F--------------------- 279 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~--l~~------------------~--------------------- 279 (535)
.+|+|||+|+.|+-+|..|++.|.+|+++++ +.. ... +
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 5799999999999999999999999999998 531 000 0
Q ss_pred -------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccC
Q psy14461 280 -------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME 339 (535)
Q Consensus 280 -------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G 339 (535)
..++.+.+.+...+.|+++ +++++++++..+++...|++. .+|++.++.+|+||-|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~--~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYE--KDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEE--cCCeEEEEEeCEEEECCC
Confidence 0111223333345678999 999999987622445667764 267666899999999999
Q ss_pred CCCCCC
Q psy14461 340 KKFDFA 345 (535)
Q Consensus 340 ~~p~~~ 345 (535)
......
T Consensus 161 ~~S~vR 166 (392)
T PRK08243 161 FHGVSR 166 (392)
T ss_pred CCCchh
Confidence 887654
No 175
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.70 E-value=0.00037 Score=74.22 Aligned_cols=96 Identities=13% Similarity=0.121 Sum_probs=62.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-cc------CcH-----------HH----------HHHH----HH
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-KH------FDQ-----------EM----------VRIL----LS 289 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-~~------~~~-----------~~----------~~~~----~~ 289 (535)
.|+|||||+.|+.+|..|+++|.+|+++++ +..+ .. .+. ++ .+.+ .+
T Consensus 5 DvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (441)
T PRK08010 5 QAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNFH 84 (441)
T ss_pred CEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 699999999999999999999999999998 5321 10 000 01 0111 11
Q ss_pred hhh-cCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461 290 SLT-KAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346 (535)
Q Consensus 290 ~l~-~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~ 346 (535)
.+. ..||++ .+ ++..++ .+.+.|... +|+ .++.+|.+++|||.+|....
T Consensus 85 ~~~~~~gv~~~~g-~~~~i~---~~~~~v~~~---~g~-~~~~~d~lviATGs~p~~p~ 135 (441)
T PRK08010 85 NLADMPNIDVIDG-QAEFIN---NHSLRVHRP---EGN-LEIHGEKIFINTGAQTVVPP 135 (441)
T ss_pred HHhhcCCcEEEEE-EEEEec---CCEEEEEeC---CCe-EEEEeCEEEEcCCCcCCCCC
Confidence 222 338888 54 455443 344555542 443 36899999999999986543
No 176
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.69 E-value=0.0004 Score=72.33 Aligned_cols=95 Identities=17% Similarity=0.250 Sum_probs=69.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEEc-CcCCcc---------Cc-------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RRLLKH---------FD------------------------------- 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~~l~~---------~~------------------------------- 280 (535)
.|+|||||+.|+-+|..|++.| .+|+++++ +.+.+. +.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 4899999999999999999999 99999998 432110 00
Q ss_pred ------------------------HHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEE
Q psy14461 281 ------------------------QEMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTV 334 (535)
Q Consensus 281 ------------------------~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~v 334 (535)
.++.+.+.+.+.+ .|+++ .++++++++.+ ++.+.|++. +|+ ++.+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~ad~v 154 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYVRVTLD---NGQ--QLRAKLL 154 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeEEEEEC---CCC--EEEeeEE
Confidence 0112233344444 48999 89999999866 455667663 666 7999999
Q ss_pred EEccCCCCC
Q psy14461 335 VNAMEKKFD 343 (535)
Q Consensus 335 i~a~G~~p~ 343 (535)
|.|.|....
T Consensus 155 V~AdG~~S~ 163 (382)
T TIGR01984 155 IAADGANSK 163 (382)
T ss_pred EEecCCChH
Confidence 999997653
No 177
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.69 E-value=0.00051 Score=75.26 Aligned_cols=101 Identities=14% Similarity=0.116 Sum_probs=71.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----Cc----------------------------------
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----FD---------------------------------- 280 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----~~---------------------------------- 280 (535)
..+|+|||+|++|+-+|..|++.|.+|+++++ +.+... +.
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 35799999999999999999999999999998 532110 00
Q ss_pred ----------------------HHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEE
Q psy14461 281 ----------------------QEMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN 336 (535)
Q Consensus 281 ----------------------~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~ 336 (535)
..+.+.+.+.+.+ .++++ .++++++++.+ ++.+.++++. .+|+ .++.+|.||.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~-~~~v~v~~~~-~~g~-~~i~ad~vVg 179 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQH-DDGVTLTVET-PDGP-YTLEADWVIA 179 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEc-CCEEEEEEEC-CCCc-EEEEeCEEEE
Confidence 0111223333444 37999 99999999876 4556666653 2342 3689999999
Q ss_pred ccCCCCCC
Q psy14461 337 AMEKKFDF 344 (535)
Q Consensus 337 a~G~~p~~ 344 (535)
|.|.....
T Consensus 180 ADG~~S~v 187 (547)
T PRK08132 180 CDGARSPL 187 (547)
T ss_pred CCCCCcHH
Confidence 99988765
No 178
>PRK06126 hypothetical protein; Provisional
Probab=97.69 E-value=0.00048 Score=75.46 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=71.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc----------------C--cH--------------------
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH----------------F--DQ-------------------- 281 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~----------------~--~~-------------------- 281 (535)
..+|+|||||++|+-+|..|+++|.+|+|+++ +.+.+. + .+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 45799999999999999999999999999987 421100 0 00
Q ss_pred ----------------------------------------HHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEe
Q psy14461 282 ----------------------------------------EMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGF 319 (535)
Q Consensus 282 ----------------------------------------~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~ 319 (535)
.+...+.+.+++ .++++ +++++++++.+ ++.+.+++.
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v~v~~~ 165 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQD-ADGVTATVE 165 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEEC-CCeEEEEEE
Confidence 011122233333 48999 99999999876 455667665
Q ss_pred cCCCCCceEEEcCEEEEccCCCC
Q psy14461 320 HPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 320 ~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
+..+|+..++.+|+||.|.|...
T Consensus 166 ~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 166 DLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred ECCCCcEEEEEEEEEEecCCcch
Confidence 43467666899999999999653
No 179
>PRK14694 putative mercuric reductase; Provisional
Probab=97.69 E-value=0.00049 Score=73.86 Aligned_cols=100 Identities=15% Similarity=0.029 Sum_probs=66.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcC---------------------------Cc----------cCc-HHH
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRL---------------------------LK----------HFD-QEM 283 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---------------------------l~----------~~~-~~~ 283 (535)
-.|+|||+|+.|+.+|..|++.|.+|.++++..+ .+ ..+ .++
T Consensus 7 ~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~l 86 (468)
T PRK14694 7 LHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRSAL 86 (468)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHHHH
Confidence 4799999999999999999999999999997221 00 000 011
Q ss_pred HHH------------HHHhhhc-CCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 284 VRI------------LLSSLTK-AGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 284 ~~~------------~~~~l~~-~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
.+. ....+++ .+|++...++..++ .+.+.|++. +|+..++++|.+|+|||.+|....+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id---~~~~~V~~~---~g~~~~~~~d~lViATGs~p~~p~i 157 (468)
T PRK14694 87 LAQQQARVEELRESKYQSILRENAAITVLNGEARFVD---ERTLTVTLN---DGGEQTVHFDRAFIGTGARPAEPPV 157 (468)
T ss_pred HHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEec---CCEEEEEec---CCCeEEEECCEEEEeCCCCCCCCCC
Confidence 111 1112333 37888333566664 344667763 5644579999999999999876543
No 180
>PRK06116 glutathione reductase; Validated
Probab=97.69 E-value=0.00023 Score=75.97 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=63.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCc-------------------------------------cCc-H---
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLK-------------------------------------HFD-Q--- 281 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~-------------------------------------~~~-~--- 281 (535)
.|+|||||+.|+.+|..++++|.+|+++++..+.. .++ +
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 85 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAKLI 85 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHHHH
Confidence 69999999999999999999999999999732200 000 0
Q ss_pred --------HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 282 --------EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 282 --------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
.+.+.+.+.+++.||++ .+. ++.++. .+|++ +|+ ++.+|.+++|||.+|+...+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~~-----~~v~~----~g~--~~~~d~lViATGs~p~~p~i 148 (450)
T PRK06116 86 ANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVDA-----HTVEV----NGE--RYTADHILIATGGRPSIPDI 148 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccC-----CEEEE----CCE--EEEeCEEEEecCCCCCCCCC
Confidence 01112234456678998 653 444431 24555 455 79999999999999976543
No 181
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.69 E-value=0.00013 Score=59.48 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=47.4
Q ss_pred HhhhcCCcEEEEeC-----CCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE-EEEecCC
Q psy14461 52 SRLSYENRILIFTH-----AVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD-ELQERGS 121 (535)
Q Consensus 52 ~~~i~~~~v~v~~k-----~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V-~lie~~~ 121 (535)
.+++++++|++|+| ++|| +|.++++++.+.+.++..+++. .. + .+..++.+.++..+| .||-.+.
T Consensus 2 ~~~i~~~~vvvf~k~~~~~~~Cp-~C~~ak~~L~~~~i~y~~idv~--~~-~-~~~~~l~~~~g~~tvP~vfi~g~ 72 (90)
T cd03028 2 KKLIKENPVVLFMKGTPEEPRCG-FSRKVVQILNQLGVDFGTFDIL--ED-E-EVRQGLKEYSNWPTFPQLYVNGE 72 (90)
T ss_pred hhhhccCCEEEEEcCCCCCCCCc-HHHHHHHHHHHcCCCeEEEEcC--CC-H-HHHHHHHHHhCCCCCCEEEECCE
Confidence 46789999999998 4999 9999999999999887666543 33 3 377778777665443 3333343
No 182
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.68 E-value=0.00023 Score=73.21 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=53.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc----------CcHH---HHHHHHHhhhcCCeEE-cceEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH----------FDQE---MVRILLSSLTKAGVSI-QCCVIE 304 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~----------~~~~---~~~~~~~~l~~~gV~i-~~~~v~ 304 (535)
..++++|||||..|+++|..|+..|.+|+++++ +.+... .|-. +.-.+.+.-...+|++ +.++|+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ 202 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVE 202 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeee
Confidence 468999999999999999999999999999998 665332 1111 1112223334568999 999999
Q ss_pred EEEEeCCCcEEE
Q psy14461 305 KVISSFDGMKGV 316 (535)
Q Consensus 305 ~i~~~~~~~~~v 316 (535)
++.+. -|.++|
T Consensus 203 ev~G~-vGnF~v 213 (622)
T COG1148 203 EVSGS-VGNFTV 213 (622)
T ss_pred eeccc-ccceEE
Confidence 87764 344443
No 183
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.68 E-value=0.0052 Score=64.72 Aligned_cols=57 Identities=16% Similarity=0.063 Sum_probs=41.6
Q ss_pred HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCC--ceEEEcCEEEEccCCC
Q psy14461 282 EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKE--PFADVFKTVVNAMEKK 341 (535)
Q Consensus 282 ~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~--~~~~~~D~vi~a~G~~ 341 (535)
.+...+.+.+++.|+++ .+++|++++.. ++.+.+.+.. ++. ..++.+|.||+|+|..
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~v~~~~--~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVVLTVQP--SAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEc--CCCCccceEecCEEEECCCcC
Confidence 55566677788899999 99999999865 4555555532 211 2268999999999965
No 184
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.67 E-value=0.00012 Score=78.28 Aligned_cols=89 Identities=18% Similarity=0.109 Sum_probs=63.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHh--CCCcEEEEEc-CcCCcc----------CcHHHHHHHHHhhhcCCeEE-cceEEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNF--LGVPVTLVYS-RRLLKH----------FDQEMVRILLSSLTKAGVSI-QCCVIEK 305 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~-~~~l~~----------~~~~~~~~~~~~l~~~gV~i-~~~~v~~ 305 (535)
.+++|+|||+|+.|+.+|..|++ .|.+|+|+++ +.+... ....+...+.+.++..+|++ .+..+-.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46899999999999999999987 6999999999 765421 11233445556677788999 7765521
Q ss_pred EEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 306 VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 306 i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
.+++. +- ...+|.||+|+|..+.
T Consensus 105 ---------dvtl~---~L---~~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 105 ---------DVSLS---EL---RDLYHVVVLAYGAESD 127 (491)
T ss_pred ---------cccHH---HH---hhhCCEEEEecCCCCC
Confidence 13332 22 2469999999998763
No 185
>PRK06753 hypothetical protein; Provisional
Probab=97.67 E-value=0.00041 Score=72.02 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=68.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----CcH-------------HH--------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----FDQ-------------EM-------------------- 283 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----~~~-------------~~-------------------- 283 (535)
+|+|||||+.|+-+|..|++.|.+|+|+++ +.+... +.+ .+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 699999999999999999999999999998 543110 000 00
Q ss_pred ---------------HHHHHHhhhc--CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461 284 ---------------VRILLSSLTK--AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA 345 (535)
Q Consensus 284 ---------------~~~~~~~l~~--~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~ 345 (535)
...+.+.|.+ .+.++ +++++++++.+ ++.+.|+++ +|+ ++.+|+||.|-|....+.
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v~v~~~---~g~--~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDKVTIHFA---DGE--SEAFDLCIGADGIHSKVR 155 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCcEEEEEC---CCC--EEecCEEEECCCcchHHH
Confidence 0111222211 23568 89999999865 566777763 676 789999999999776553
No 186
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.67 E-value=0.0025 Score=62.82 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=73.3
Q ss_pred HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCCCCCC-----------CC
Q psy14461 282 EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKFDFAA-----------LN 348 (535)
Q Consensus 282 ~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~-----------l~ 348 (535)
.+.+.+...+++.|.-+ ++..|.+.+-. +++++ |.. .+.....+.+|..++|+|.--...+ +.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~t---rn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ 334 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYT---RNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFD 334 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEe---cccccCCCChhHeeeeccccccccchhhhhhhhcchhh
Confidence 34566777888888888 99999988776 46554 433 3666667889999999994321111 11
Q ss_pred ccccCe----eec------CC----CceEcCCCCCcC-----CCCEEEeCCcCCCCCCcHH------HHHHHHHHHHHHH
Q psy14461 349 LHHIGV----DIK------KK----SYVVCNEKDQTS-----VGNIFAVGGIVHGKPNNAS------MAAISARLIIERL 403 (535)
Q Consensus 349 l~~~gl----~~~------~~----G~i~vd~~~~T~-----~~~IyA~GD~~~~~~~~~~------~A~~~g~~aa~~i 403 (535)
++-... ++. +. =.+.+|+++|.+ ..|+||+|-+. ++...+. +|+..|-.||+.|
T Consensus 335 ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavl-gGfdpi~egcGsGVaivta~~aa~qi 413 (421)
T COG3075 335 LDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVL-GGFDPIAEGCGSGVAIVTALHAAEQI 413 (421)
T ss_pred cccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHh-cCCcHHHhcCCcchHHHHHHHHHHHH
Confidence 110000 000 00 025667777643 46899999998 6644332 4677777777777
Q ss_pred hC
Q psy14461 404 YG 405 (535)
Q Consensus 404 ~g 405 (535)
+.
T Consensus 414 ~~ 415 (421)
T COG3075 414 AE 415 (421)
T ss_pred HH
Confidence 64
No 187
>PRK07190 hypothetical protein; Provisional
Probab=97.65 E-value=0.0005 Score=74.05 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=69.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----C------------------------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----F------------------------------------ 279 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----~------------------------------------ 279 (535)
-.|+|||+|++|+-+|..|++.|.+|+++++ +.+... +
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4699999999999999999999999999988 532100 0
Q ss_pred ----------c------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEE
Q psy14461 280 ----------D------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN 336 (535)
Q Consensus 280 ----------~------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~ 336 (535)
+ ..+...+.+.+++.|+++ .++++++++.+ ++.+.+.+. +|+ ++.++.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~-~~~v~v~~~---~g~--~v~a~~vVg 159 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELN-QAGCLTTLS---NGE--RIQSRYVIG 159 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCeeEEEEC---CCc--EEEeCEEEE
Confidence 0 011122334456679999 99999999876 455666553 565 799999999
Q ss_pred ccCCC
Q psy14461 337 AMEKK 341 (535)
Q Consensus 337 a~G~~ 341 (535)
|.|.+
T Consensus 160 ADG~~ 164 (487)
T PRK07190 160 ADGSR 164 (487)
T ss_pred CCCCC
Confidence 99964
No 188
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.64 E-value=0.00037 Score=73.13 Aligned_cols=41 Identities=10% Similarity=-0.069 Sum_probs=36.5
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK 128 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~ 128 (535)
.+||+|||+||||.++|..+...+.+|+|+||.+.+++..+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~ 43 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPC 43 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCcc
Confidence 47899999999999999999888899999999987766554
No 189
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.64 E-value=0.00055 Score=71.23 Aligned_cols=96 Identities=11% Similarity=0.141 Sum_probs=69.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--------c--cCc-------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--------K--HFD------------------------------- 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--------~--~~~------------------------------- 280 (535)
.|+|||+|+.|+-+|..|++.|.+|+|+++ +.+- . .+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 489999999999999999999999999998 5320 0 000
Q ss_pred -------------------------HHHHHHHHHhhhcCC-eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCE
Q psy14461 281 -------------------------QEMVRILLSSLTKAG-VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKT 333 (535)
Q Consensus 281 -------------------------~~~~~~~~~~l~~~g-V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~ 333 (535)
.++.+.+.+.+.+.| +++ .++++++++.. ++.+.++++ +|+ ++.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~~~~ 154 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHVELTLD---DGQ--QLRARL 154 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCeeEEEEC---CCC--EEEeeE
Confidence 011222333445556 889 99999999765 455667663 676 799999
Q ss_pred EEEccCCCCCC
Q psy14461 334 VVNAMEKKFDF 344 (535)
Q Consensus 334 vi~a~G~~p~~ 344 (535)
||.|.|.....
T Consensus 155 vi~adG~~S~v 165 (385)
T TIGR01988 155 LVGADGANSKV 165 (385)
T ss_pred EEEeCCCCCHH
Confidence 99999986543
No 190
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.63 E-value=0.00065 Score=72.02 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=68.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc------------------C----c------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH------------------F----D------------------ 280 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~------------------~----~------------------ 280 (535)
-.|+|||||+.|+-+|..|++.|.+|.++++ +.+... + +
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 4799999999999999999999999999998 432100 0 0
Q ss_pred ----------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461 281 ----------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA 337 (535)
Q Consensus 281 ----------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a 337 (535)
.++.+.+.+..++.|+++ .+++++++..+ ++.+.... .+|. ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~---~~g~--~i~A~~VI~A 159 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE---ADGD--VIEAKTVILA 159 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE---cCCc--EEECCEEEEE
Confidence 011123444556689999 99999998765 45443322 2555 7899999999
Q ss_pred cCCCC
Q psy14461 338 MEKKF 342 (535)
Q Consensus 338 ~G~~p 342 (535)
.|...
T Consensus 160 ~G~~s 164 (428)
T PRK10157 160 DGVNS 164 (428)
T ss_pred eCCCH
Confidence 99743
No 191
>PRK08013 oxidoreductase; Provisional
Probab=97.62 E-value=0.00062 Score=71.51 Aligned_cols=98 Identities=11% Similarity=0.073 Sum_probs=70.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----------CcH----------------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----------FDQ---------------------------- 281 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----------~~~---------------------------- 281 (535)
.+|+|||||+.|+-+|..|++.|.+|+++++ +.+.+. +.+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 4799999999999999999999999999998 532100 000
Q ss_pred ----------------------------HHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEc
Q psy14461 282 ----------------------------EMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVF 331 (535)
Q Consensus 282 ----------------------------~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~ 331 (535)
++.+.+.+.+.+ .||++ .++++++++.+ ++.+.+++. +|+ ++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v~v~~~---~g~--~i~a 157 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWG-ENEAFLTLK---DGS--MLTA 157 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CCeEEEEEc---CCC--EEEe
Confidence 011122223333 37899 99999998765 455677773 676 7999
Q ss_pred CEEEEccCCCCCCC
Q psy14461 332 KTVVNAMEKKFDFA 345 (535)
Q Consensus 332 D~vi~a~G~~p~~~ 345 (535)
|+||-|-|......
T Consensus 158 ~lvVgADG~~S~vR 171 (400)
T PRK08013 158 RLVVGADGANSWLR 171 (400)
T ss_pred eEEEEeCCCCcHHH
Confidence 99999999876553
No 192
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.62 E-value=0.00047 Score=68.69 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=32.1
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF 125 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~ 125 (535)
+|+|||+|++|+.+|+.+...+.+|+|+|+.+....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 689999999999999998888999999999976543
No 193
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.61 E-value=0.00044 Score=74.17 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
.|+|||+|+.|+.+|..++++|.+|+++++
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~ 34 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 699999999999999999999999999996
No 194
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.60 E-value=0.00016 Score=70.99 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=37.4
Q ss_pred HHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461 76 ERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS 124 (535)
Q Consensus 76 k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~ 124 (535)
+++++.+.. +...||+|||+|++|+.+|+.+...+.+|+|+|+...++
T Consensus 14 ~~~~~~~~~-~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~G 61 (257)
T PRK04176 14 EEYFEKLLD-YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFG 61 (257)
T ss_pred HHHHHHHHH-hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 334444432 224688999999999999999988999999999987654
No 195
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.60 E-value=0.00064 Score=70.73 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=69.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc---------Cc--------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH---------FD-------------------------------- 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~---------~~-------------------------------- 280 (535)
+|+|||||+.|+-+|..|++.|.+|+|+++ +...+. +.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 599999999999999999999999999996 311000 00
Q ss_pred ---------------------HHHHHHHHHhhhcC-CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461 281 ---------------------QEMVRILLSSLTKA-GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA 337 (535)
Q Consensus 281 ---------------------~~~~~~~~~~l~~~-gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a 337 (535)
.++.+.+.+.+.+. ++++ .+++++++..+ ++.+.|.+. ++ ++.+|+||.|
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v~v~~~---~~---~~~adlvIgA 155 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISH-NDYSIIKFD---DK---QIKCNLLIIC 155 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEc-CCeEEEEEc---CC---EEeeCEEEEe
Confidence 12233344444444 4888 89999998766 455677762 33 6999999999
Q ss_pred cCCCCCCC
Q psy14461 338 MEKKFDFA 345 (535)
Q Consensus 338 ~G~~p~~~ 345 (535)
-|......
T Consensus 156 DG~~S~vR 163 (374)
T PRK06617 156 DGANSKVR 163 (374)
T ss_pred CCCCchhH
Confidence 99887654
No 196
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.60 E-value=0.00013 Score=82.95 Aligned_cols=90 Identities=20% Similarity=0.239 Sum_probs=66.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS 309 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~ 309 (535)
+++|+|||||+.|+.+|..|++.|.+|+++++ +.+. | .++.++.+...+.+++.||++ .++.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~----- 505 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG----- 505 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC-----
Confidence 57899999999999999999999999999998 5432 1 234566666667788889999 887541
Q ss_pred CCCcEEEEEecCCCCCceEEEcCEEEEccCC-CCCC
Q psy14461 310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEK-KFDF 344 (535)
Q Consensus 310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~-~p~~ 344 (535)
. .++++ +.. ...+|.||+|+|. .|..
T Consensus 506 --~--~v~~~---~l~--~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 506 --K--TITIE---ELE--EEGFKGIFIASGAGLPNF 532 (752)
T ss_pred --C--cCCHH---HHh--hcCCCEEEEeCCCCCCCC
Confidence 1 13332 222 4569999999998 4654
No 197
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.59 E-value=0.00015 Score=77.79 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=65.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---------cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---------HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS 308 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---------~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~ 308 (535)
.+++|+|||+|+.|+.+|..|++.|.+|+++++ +.+.. .++.++.....+.+.+.||++ .++.+.. +
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~- 219 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D- 219 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence 357999999999999999999999999999998 65421 234556666667788889999 8876531 0
Q ss_pred eCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
+.. +.. ...+|.|++|+|..
T Consensus 220 -------~~~----~~~--~~~~d~vvlAtGa~ 239 (471)
T PRK12810 220 -------ITA----EEL--LAEYDAVFLGTGAY 239 (471)
T ss_pred -------CCH----HHH--HhhCCEEEEecCCC
Confidence 111 111 35789999999997
No 198
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.59 E-value=0.00044 Score=73.79 Aligned_cols=91 Identities=22% Similarity=0.212 Sum_probs=63.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCcc-------------------------------------Cc-H---
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKH-------------------------------------FD-Q--- 281 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~-------------------------------------~~-~--- 281 (535)
.|+|||+|+.|+.+|..++++|.+|++++++.+... ++ +
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 83 (450)
T TIGR01421 4 DYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPELK 83 (450)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHHHH
Confidence 699999999999999999999999999987211100 00 0
Q ss_pred --------HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461 282 --------EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA 345 (535)
Q Consensus 282 --------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~ 345 (535)
.+.+.+...+++.||++ .++.. +.. +. +|++ +|+ .+.+|.+|+|||.+|...
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~--~~~--~~--~v~v----~~~--~~~~d~vIiAtGs~p~~p 144 (450)
T TIGR01421 84 EKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR--FTK--DG--TVEV----NGR--DYTAPHILIATGGKPSFP 144 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE--Ecc--CC--EEEE----CCE--EEEeCEEEEecCCCCCCC
Confidence 11222445567779998 76543 221 22 3444 455 699999999999998755
No 199
>PRK07045 putative monooxygenase; Reviewed
Probab=97.59 E-value=0.00089 Score=69.99 Aligned_cols=99 Identities=23% Similarity=0.233 Sum_probs=70.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc--c---Cc-----------------------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK--H---FD----------------------------------- 280 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~--~---~~----------------------------------- 280 (535)
-+|+|||||+.|+-+|..|++.|.+|+++++ +.+.+ . +.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 85 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL 85 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence 4799999999999999999999999999997 53210 0 00
Q ss_pred --------------------HHHHHHHHHhhh-cCCeEE-cceEEEEEEEeCCCc-EEEEEecCCCCCceEEEcCEEEEc
Q psy14461 281 --------------------QEMVRILLSSLT-KAGVSI-QCCVIEKVISSFDGM-KGVRGFHPESKEPFADVFKTVVNA 337 (535)
Q Consensus 281 --------------------~~~~~~~~~~l~-~~gV~i-~~~~v~~i~~~~~~~-~~v~~~~~~~G~~~~~~~D~vi~a 337 (535)
.++.+.+.+.+. ..|+++ .+++++.++.++++. +.|++ .+|+ ++.+|+||-|
T Consensus 86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~~~~~~vIgA 160 (388)
T PRK07045 86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTL---SDGE--RVAPTVLVGA 160 (388)
T ss_pred EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEe---CCCC--EEECCEEEEC
Confidence 011222333333 347999 999999998764443 34665 3676 7999999999
Q ss_pred cCCCCCCC
Q psy14461 338 MEKKFDFA 345 (535)
Q Consensus 338 ~G~~p~~~ 345 (535)
.|......
T Consensus 161 DG~~S~vR 168 (388)
T PRK07045 161 DGARSMIR 168 (388)
T ss_pred CCCChHHH
Confidence 99886544
No 200
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.59 E-value=0.00046 Score=72.20 Aligned_cols=97 Identities=14% Similarity=0.129 Sum_probs=70.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-c---------------------------cC-------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-K---------------------------HF------------- 279 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-~---------------------------~~------------- 279 (535)
-+|+|||||+.|+-+|..|++.|.+|+++++ +... . .+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLET 85 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEE
Confidence 4799999999999999999999999999997 4100 0 00
Q ss_pred -------------------------cHHHHHHHHHhhhcC-CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461 280 -------------------------DQEMVRILLSSLTKA-GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK 332 (535)
Q Consensus 280 -------------------------~~~~~~~~~~~l~~~-gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D 332 (535)
...+.+.+.+.+.+. |+++ .+++++++... ++.+.|++. +|+ ++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~a~ 159 (391)
T PRK08020 86 WEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRD-DDGWELTLA---DGE--EIQAK 159 (391)
T ss_pred EeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEc-CCeEEEEEC---CCC--EEEeC
Confidence 011122333444444 8999 89999998765 455666663 666 79999
Q ss_pred EEEEccCCCCCC
Q psy14461 333 TVVNAMEKKFDF 344 (535)
Q Consensus 333 ~vi~a~G~~p~~ 344 (535)
+||.|.|.....
T Consensus 160 ~vI~AdG~~S~v 171 (391)
T PRK08020 160 LVIGADGANSQV 171 (391)
T ss_pred EEEEeCCCCchh
Confidence 999999988754
No 201
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.58 E-value=0.00012 Score=85.05 Aligned_cols=91 Identities=21% Similarity=0.193 Sum_probs=66.7
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS 309 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~ 309 (535)
.++|+|||||+.|+.+|..|+++|.+|+|+++ +.+. | .++.++.+...+.+++.||++ ++..+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg----- 504 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG----- 504 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-----
Confidence 47899999999999999999999999999998 6542 2 235677777788888999999 886441
Q ss_pred CCCcEEEEEecCCCCCceEEEcCEEEEccCCC-CCC
Q psy14461 310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKK-FDF 344 (535)
Q Consensus 310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~-p~~ 344 (535)
. .++++.. . + ...+|.||+|||.. |..
T Consensus 505 --~--~~~~~~l-~-~--~~~yDaViIATGa~~pr~ 532 (1006)
T PRK12775 505 --K--TFTVPQL-M-N--DKGFDAVFLGVGAGAPTF 532 (1006)
T ss_pred --C--ccCHHHH-h-h--ccCCCEEEEecCCCCCCC
Confidence 1 1222110 0 0 24589999999984 554
No 202
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.57 E-value=0.00054 Score=73.43 Aligned_cols=94 Identities=19% Similarity=0.109 Sum_probs=63.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCcc------------------------------------Cc-HHHHH
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKH------------------------------------FD-QEMVR 285 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~~------------------------------------~~-~~~~~ 285 (535)
+|+|||||+.|+.+|..++++|.+|.++++..+... ++ .++.+
T Consensus 6 DvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 85 (462)
T PRK06416 6 DVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKVQE 85 (462)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHHHH
Confidence 699999999999999999999999999998222100 00 11111
Q ss_pred H-----------HHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461 286 I-----------LLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF 344 (535)
Q Consensus 286 ~-----------~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~ 344 (535)
+ +...+++.||++ .+. ++.++ ...+.|... +|. .++.+|.+|+|||.+|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~---~~~~~v~~~---~~~-~~~~~d~lViAtGs~p~~ 148 (462)
T PRK06416 86 WKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLVD---PNTVRVMTE---DGE-QTYTAKNIILATGSRPRE 148 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc---CCEEEEecC---CCc-EEEEeCEEEEeCCCCCCC
Confidence 1 334566789998 653 44343 233444431 232 379999999999999864
No 203
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.57 E-value=0.00023 Score=81.73 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=62.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS 309 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~ 309 (535)
+++|+|||||+.|+.+|..|++.|.+|+|+++ +.+. | ..+.+......+.+.+.||++ .+....
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d----- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD----- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence 36899999999999999999999999999998 5432 1 123445555556677789998 763210
Q ss_pred CCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 310 FDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 310 ~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
+.+. +.+ ...+|.|++|+|..+.
T Consensus 612 ------~~ve---~l~--~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 612 ------LTVA---ELK--NQGYKYVILAIGAWKH 634 (1012)
T ss_pred ------eEhh---hhh--cccccEEEECCCCCCC
Confidence 1121 222 4568999999998754
No 204
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.55 E-value=0.005 Score=64.90 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
..+...+.+.+++.|+++ .++.|++++.+ ++.+ .|+. ++. ++.+|.||+|+|.-
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t----~~~--~~~a~~VV~a~G~~ 256 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQT----GGG--VITADAYVVALGSY 256 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEe----CCc--EEeCCEEEECCCcc
Confidence 356667777788899999 99999999875 3443 3443 333 68999999999964
No 205
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.54 E-value=0.0009 Score=69.91 Aligned_cols=95 Identities=17% Similarity=0.091 Sum_probs=66.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-----cC-------------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-----HF------------------------------------- 279 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-----~~------------------------------------- 279 (535)
.|+|||+|+.|+-+|..|++.|.+|+++++ +.+.. .+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 489999999999999999999999999997 43210 00
Q ss_pred ---cHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 280 ---DQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 280 ---~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
..++.+.+.+.+.+.|+++...++..+...+++...|++ .+|+ ++.+|.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~---~~g~--~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYC---AGGQ--RIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEe---CCCC--EEEeCEEEECCCCch
Confidence 012233444555666888844467777654233445665 3665 799999999999887
No 206
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.54 E-value=0.00087 Score=69.94 Aligned_cols=97 Identities=15% Similarity=0.068 Sum_probs=69.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---------------------cC--------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---------------------HF-------------------- 279 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---------------------~~-------------------- 279 (535)
-+|+|||||+.|+-+|..|++.|.+|+++++ +.+.. .+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4799999999999999999999999999998 44211 00
Q ss_pred ------------------------cHHHHHHHHHhhhcCC-eEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEE
Q psy14461 280 ------------------------DQEMVRILLSSLTKAG-VSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTV 334 (535)
Q Consensus 280 ------------------------~~~~~~~~~~~l~~~g-V~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~v 334 (535)
...+.+.+.+.+++.| +++.+.++++++.. ++.+.|++. +|+ ++.+|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~a~~v 159 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVD-PDAATLTLA---DGQ--VLRADLV 159 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEec-CCeEEEEEC---CCC--EEEeeEE
Confidence 0112233444455566 77756678888755 455666663 565 7999999
Q ss_pred EEccCCCCCC
Q psy14461 335 VNAMEKKFDF 344 (535)
Q Consensus 335 i~a~G~~p~~ 344 (535)
|.|.|.....
T Consensus 160 I~adG~~S~v 169 (388)
T PRK07608 160 VGADGAHSWV 169 (388)
T ss_pred EEeCCCCchH
Confidence 9999987543
No 207
>PLN02463 lycopene beta cyclase
Probab=97.54 E-value=0.00055 Score=72.67 Aligned_cols=127 Identities=9% Similarity=-0.027 Sum_probs=68.0
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc-ccc---cccccccchhh-ccccccc-ccc-----cccC
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK-RRL---YYPVAMSDLEL-EQDSTSA-LNV-----TIRN 156 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~-~l~---~~~~~i~~~~~-~~~~~~~-~~~-----~~~~ 156 (535)
.++|+|||+|++|+++|......+.+|+|+|+.+...+.+. +.. ....++..... ..+.... .+. ....
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~ 107 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRP 107 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCc
Confidence 47899999999999999888888999999999764322111 000 00000111000 0000000 000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEec--C--CEEEEce-eEEEcceEEEeeCceec
Q psy14461 157 WNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTN--P--HTIKLSN-RSVTGFNFLLAVERRCL 220 (535)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~--~--~~v~~~~-~~~~~d~lViATGs~p~ 220 (535)
+..+ . + ..+...+.+.+...||+++.+++..+. + ..|++++ .++.+|.||.|+|....
T Consensus 108 y~~V-~-R----~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 108 YGRV-N-R----KKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred ceeE-E-H----HHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0000 0 1 122233334456679998776665432 2 2355544 58999999999998654
No 208
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.53 E-value=0.0013 Score=68.95 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=69.2
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--cc-----Cc--------------------------------
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--KH-----FD-------------------------------- 280 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--~~-----~~-------------------------------- 280 (535)
+.+|+|||||+.|+-+|..|++.|.+|+|+++ +... .. +.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 35799999999999999999999999999998 5311 00 00
Q ss_pred ---------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEcc
Q psy14461 281 ---------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM 338 (535)
Q Consensus 281 ---------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~ 338 (535)
..+...+.+.+.+.|+.+ .+.+++.+...+++...|++.. +|+..++.+|+||-|-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~--~g~~~~i~adlvIGAD 159 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFER--DGERHRLDCDFIAGCD 159 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEE--CCeEEEEEeCEEEECC
Confidence 011122333344557777 7777766654223445666642 5655578999999999
Q ss_pred CCCCCCC
Q psy14461 339 EKKFDFA 345 (535)
Q Consensus 339 G~~p~~~ 345 (535)
|......
T Consensus 160 G~~S~VR 166 (390)
T TIGR02360 160 GFHGVSR 166 (390)
T ss_pred CCchhhH
Confidence 9876543
No 209
>PRK07538 hypothetical protein; Provisional
Probab=97.52 E-value=0.0011 Score=69.99 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=68.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----C-------------c-----------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----F-------------D----------------------- 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----~-------------~----------------------- 280 (535)
+|+|||||+.|+-+|..|++.|.+|+++++ +.+.+. + .
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 699999999999999999999999999998 532110 0 0
Q ss_pred --------------------HHHHHHHHHhhhc-CC-eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461 281 --------------------QEMVRILLSSLTK-AG-VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA 337 (535)
Q Consensus 281 --------------------~~~~~~~~~~l~~-~g-V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a 337 (535)
.++.+.+.+.+.+ .| +.+ .++++++++.++ +.+.+.+.+..+|+.+++.+|+||-|
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~-~~~~~~~~~~~~g~~~~~~adlvIgA 160 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDA-DVTVVFLGDRAGGDLVSVRGDVLIGA 160 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecC-CceEEEEeccCCCccceEEeeEEEEC
Confidence 0111122222222 35 468 999999998663 33555554323444458999999999
Q ss_pred cCCCCCC
Q psy14461 338 MEKKFDF 344 (535)
Q Consensus 338 ~G~~p~~ 344 (535)
-|.....
T Consensus 161 DG~~S~v 167 (413)
T PRK07538 161 DGIHSAV 167 (413)
T ss_pred CCCCHHH
Confidence 9987654
No 210
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.51 E-value=0.0002 Score=79.80 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=67.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS 308 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~ 308 (535)
.+++|+|||+|+.|+.+|..|++.|.+|+++++ +.+. | .++.++.+...+.+++.||++ +++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 368999999999999999999999999999998 6532 1 256677666677888999999 8876521
Q ss_pred eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
.+.+. +. ...+|.||+|+|..+.
T Consensus 386 ------~~~~~---~l---~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 ------DITFS---DL---TSEYDAVFIGVGTYGM 408 (639)
T ss_pred ------cCCHH---HH---HhcCCEEEEeCCCCCC
Confidence 01221 11 3468999999998653
No 211
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.51 E-value=0.0014 Score=59.22 Aligned_cols=31 Identities=10% Similarity=-0.110 Sum_probs=24.7
Q ss_pred EeeCCccHHHHHHHHHhh-----CCCeEEEEecCCc
Q psy14461 92 DRIGDEGILLEEELKRQT-----NQRRDELQERGSH 122 (535)
Q Consensus 92 ~iiG~G~aG~~~al~~~~-----~~~~V~lie~~~~ 122 (535)
+|||+|++|++.+..+.. ...+|+|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 589999999998865543 3689999999654
No 212
>PLN02661 Putative thiazole synthesis
Probab=97.51 E-value=0.004 Score=63.29 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=93.9
Q ss_pred CcEEEECCChHHHHHHHHHHhC-CCcEEEEEc-CcCCc----------c-----------------Cc-----------H
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFL-GVPVTLVYS-RRLLK----------H-----------------FD-----------Q 281 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~-~~~l~----------~-----------------~~-----------~ 281 (535)
-+|+|||+|..|+-+|..|++. |.+|+++++ ..+.. . ++ .
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~ 172 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAA 172 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchH
Confidence 4799999999999999999976 899999998 43311 0 00 0
Q ss_pred HHHHHHH-HhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEe------cCCCC---CceEEEcCEEEEccCCCCCCCCCCc
Q psy14461 282 EMVRILL-SSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGF------HPESK---EPFADVFKTVVNAMEKKFDFAALNL 349 (535)
Q Consensus 282 ~~~~~~~-~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~------~~~~G---~~~~~~~D~vi~a~G~~p~~~~l~l 349 (535)
++...+. +.+++.||++ .++.+.++..+ ++++ -|.+. +..++ +...+.++.||+|||..+.......
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~ 251 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV 251 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhhh
Confidence 1111223 2334578999 99999998765 3443 23321 00111 2246899999999996653221111
Q ss_pred c---ccCeeecC-CC--ceEcCC-------CCCcCCCCEEEeCCcCC---CCCCcHHH--H-HHHHHHHHHHHhC
Q psy14461 350 H---HIGVDIKK-KS--YVVCNE-------KDQTSVGNIFAVGGIVH---GKPNNASM--A-AISARLIIERLYG 405 (535)
Q Consensus 350 ~---~~gl~~~~-~G--~i~vd~-------~~~T~~~~IyA~GD~~~---~~~~~~~~--A-~~~g~~aa~~i~g 405 (535)
. ..|+. .+ .| .+.++. +.+-=+||+|++|=.++ |.|...+. + .-.|+.||+-|+.
T Consensus 252 ~~~~~~g~~-~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~ 325 (357)
T PLN02661 252 KRLKSIGMI-DSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALK 325 (357)
T ss_pred hcccccCCc-cCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHH
Confidence 1 11110 00 01 111111 11123799999997765 44444432 3 4578888888874
No 213
>PRK06370 mercuric reductase; Validated
Probab=97.50 E-value=0.00084 Score=71.99 Aligned_cols=93 Identities=18% Similarity=0.103 Sum_probs=62.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCCc-------------------------------------cCc-HHH
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLK-------------------------------------HFD-QEM 283 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l~-------------------------------------~~~-~~~ 283 (535)
-.|+|||+|+.|+.+|..++++|.+|+++++..+.. .++ +++
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 85 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFKAV 85 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHHHH
Confidence 469999999999999999999999999999721100 000 011
Q ss_pred H-----------HHHHHhhhcC-CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461 284 V-----------RILLSSLTKA-GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346 (535)
Q Consensus 284 ~-----------~~~~~~l~~~-gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~ 346 (535)
. ..+...+++. ||++ .++.+. +. . .+|++ +|+ ++.+|.+|+|||.+|....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~-~~---~--~~v~v----~~~--~~~~d~lViATGs~p~~p~ 149 (463)
T PRK06370 86 MARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF-ES---P--NTVRV----GGE--TLRAKRIFINTGARAAIPP 149 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE-cc---C--CEEEE----CcE--EEEeCEEEEcCCCCCCCCC
Confidence 1 2233445665 8988 766542 11 1 23544 454 7899999999999997654
No 214
>PLN02697 lycopene epsilon cyclase
Probab=97.49 E-value=0.0012 Score=71.47 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=67.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC------------c----------------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF------------D---------------------------- 280 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~------------~---------------------------- 280 (535)
-.|+|||+|+.|+.+|..|++.|.+|.++++ ..+.... +
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 4699999999999999999999999999986 2221100 0
Q ss_pred ---HHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 281 ---QEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 281 ---~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
..+.+.+.+.+.+.|+++.+.+|+++... ++.+.+... .+|. ++.+|.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~-~~~~~vv~~--~dG~--~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSYLSSKVDRITEA-SDGLRLVAC--EDGR--VIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEc-CCcEEEEEE--cCCc--EEECCEEEECCCcCh
Confidence 12223444555667888866688888765 344433222 2666 799999999999876
No 215
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.49 E-value=0.00097 Score=71.37 Aligned_cols=30 Identities=33% Similarity=0.319 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
+|+|||+|+.|+.+|..+++.|.+|+++++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~ 31 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDE 31 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEC
Confidence 699999999999999999999999999998
No 216
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.48 E-value=0.0012 Score=68.82 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=69.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-C--cCC---c------cCcH-------------HH-------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R--RLL---K------HFDQ-------------EM------------- 283 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~--~~l---~------~~~~-------------~~------------- 283 (535)
-+|+|||||+.|+-+|..|++.|.+|+++++ + ... + .+.+ .+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 3699999999999999999999999999997 4 110 0 0000 00
Q ss_pred -----------------------------HHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461 284 -----------------------------VRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK 332 (535)
Q Consensus 284 -----------------------------~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D 332 (535)
...+.+.+.+ .|+++ .++++++++.+ ++.+.|+++ +|+ ++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~-~~~~~v~~~---~g~--~~~~~ 157 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFS-AEGNRVTLE---SGA--EIEAK 157 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEc-CCeEEEEEC---CCC--EEEee
Confidence 0011112222 36888 89999999876 455677774 676 89999
Q ss_pred EEEEccCCCCCCC
Q psy14461 333 TVVNAMEKKFDFA 345 (535)
Q Consensus 333 ~vi~a~G~~p~~~ 345 (535)
+||.|.|..+...
T Consensus 158 lvIgADG~~S~vR 170 (384)
T PRK08849 158 WVIGADGANSQVR 170 (384)
T ss_pred EEEEecCCCchhH
Confidence 9999999988764
No 217
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.47 E-value=0.00068 Score=70.79 Aligned_cols=126 Identities=11% Similarity=-0.047 Sum_probs=66.3
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc-ccccc---cccccchhh-ccccccccc--c--cccCHHHH
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK-RRLYY---PVAMSDLEL-EQDSTSALN--V--TIRNWNAA 160 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~-~l~~~---~~~i~~~~~-~~~~~~~~~--~--~~~~~~~l 160 (535)
||+|||+|++|+.+|..+...+.+|+|+|+.+..+.... ++... ..++..... ...+..... . ...+....
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 579999999999999888788999999999875432211 11000 000000000 000000000 0 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEeEEEEec---CC--EEEEce-eEEEcceEEEeeCcee
Q psy14461 161 TKLIKRFCIRAKNDSMRELKALGIDIVRTAAAFTN---PH--TIKLSN-RSVTGFNFLLAVERRC 219 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~---~~--~v~~~~-~~~~~d~lViATGs~p 219 (535)
.-.. ..+...+.+.+...|++++.+++..+. .. .|++++ .++++|.||.|+|..+
T Consensus 81 ~i~~----~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDS----TRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcH----HHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0000 122233344556668998877765532 22 344444 5899999999999876
No 218
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.45 E-value=0.0013 Score=69.10 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=69.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC-C----c-----cCc-------------HH---------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL-L----K-----HFD-------------QE--------------- 282 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~-l----~-----~~~-------------~~--------------- 282 (535)
.+|+|||||++|+-+|..|++.|.+|+++++ ... . + .+. ++
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 84 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEVW 84 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEEE
Confidence 4799999999999999999999999999997 310 0 0 000 00
Q ss_pred ----------------------------HHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461 283 ----------------------------MVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK 332 (535)
Q Consensus 283 ----------------------------~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D 332 (535)
+...+.+.+.+ .||++ .+.++++++.+ ++.+.|++. +|+ ++.+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~a~ 158 (405)
T PRK08850 85 EQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVG-ESEAWLTLD---NGQ--ALTAK 158 (405)
T ss_pred eCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEee-CCeEEEEEC---CCC--EEEeC
Confidence 11122222333 47999 99999999765 455677773 676 89999
Q ss_pred EEEEccCCCCCC
Q psy14461 333 TVVNAMEKKFDF 344 (535)
Q Consensus 333 ~vi~a~G~~p~~ 344 (535)
+||.|.|.....
T Consensus 159 lvIgADG~~S~v 170 (405)
T PRK08850 159 LVVGADGANSWL 170 (405)
T ss_pred EEEEeCCCCChh
Confidence 999999987654
No 219
>PLN02507 glutathione reductase
Probab=97.45 E-value=0.0016 Score=70.52 Aligned_cols=100 Identities=15% Similarity=0.027 Sum_probs=65.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc----------CcCCcc------CcH------------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS----------RRLLKH------FDQ------------------------ 281 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~----------~~~l~~------~~~------------------------ 281 (535)
-.++|||+|+.|+.+|..++++|.+|.++++ +.+... .+.
T Consensus 26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~~ 105 (499)
T PLN02507 26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEIN 105 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 3699999999999999999999999999994 111000 000
Q ss_pred -----H--------------HHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 282 -----E--------------MVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 282 -----~--------------~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
+ +...+++.+++.||++...++..++ ...+.|+. .+|++.++.+|.+|+|||.+|
T Consensus 106 ~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd---~~~v~V~~---~~g~~~~~~~d~LIIATGs~p 179 (499)
T PLN02507 106 EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVG---PNEVEVTQ---LDGTKLRYTAKHILIATGSRA 179 (499)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEec---CCEEEEEe---CCCcEEEEEcCEEEEecCCCC
Confidence 0 0011223345567887223444443 34456665 367655789999999999998
Q ss_pred CCCCC
Q psy14461 343 DFAAL 347 (535)
Q Consensus 343 ~~~~l 347 (535)
....+
T Consensus 180 ~~p~i 184 (499)
T PLN02507 180 QRPNI 184 (499)
T ss_pred CCCCC
Confidence 76543
No 220
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.44 E-value=0.0012 Score=71.90 Aligned_cols=33 Identities=12% Similarity=-0.022 Sum_probs=31.0
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS 121 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~ 121 (535)
+||+|||+|+||+.+|+.....+.+|+|+|+..
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 789999999999999999999999999999984
No 221
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.44 E-value=0.00096 Score=70.08 Aligned_cols=91 Identities=22% Similarity=0.287 Sum_probs=66.1
Q ss_pred EEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-----------------------C---------------------
Q psy14461 245 LVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-----------------------F--------------------- 279 (535)
Q Consensus 245 vViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-----------------------~--------------------- 279 (535)
+|||||+.|+-+|..+++.|.+|+++++ +.+... .
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 5899999999999999999999999997 543210 0
Q ss_pred -----------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEE
Q psy14461 280 -----------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV 335 (535)
Q Consensus 280 -----------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi 335 (535)
..++.+.+.+.+++.|+++ .++.++++... ++.+.++. +++ ++.+|.||
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~~v~~----~~~--~i~ad~VI 153 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DNGFGVET----SGG--EYEADKVI 153 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCeEEEEE----CCc--EEEcCEEE
Confidence 0112233445566788999 99999999765 34455554 444 68999999
Q ss_pred EccCCCC
Q psy14461 336 NAMEKKF 342 (535)
Q Consensus 336 ~a~G~~p 342 (535)
+|+|...
T Consensus 154 lAtG~~s 160 (400)
T TIGR00275 154 LATGGLS 160 (400)
T ss_pred ECCCCcc
Confidence 9999753
No 222
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.44 E-value=0.00028 Score=76.04 Aligned_cols=79 Identities=23% Similarity=0.104 Sum_probs=61.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVR 317 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~ 317 (535)
.+++|+|||+|.+|+++|..|+++|.+|+++++ +. +....+.+.|++.||++ .+..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~------------- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT------------- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-------------
Confidence 357899999999999999999999999999986 42 22334556677788888 654321
Q ss_pred EecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 318 GFHPESKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 318 ~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
. ...+|+||+++|.+|+.+.+
T Consensus 75 ~---------~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 75 L---------PEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred c---------cCCCCEEEECCCcCCCCHHH
Confidence 1 24589999999999999864
No 223
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.44 E-value=0.00028 Score=78.94 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=65.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS 308 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~ 308 (535)
.+++|+|||+|+.|+.+|..|++.|.+|+++++ +.+. | .++.++.....+.+++.||++ .++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 357999999999999999999999999999998 6532 2 245666666667788889999 8876521
Q ss_pred eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
.+.++ +- ...+|.|++|+|..+
T Consensus 403 ------~i~~~---~~---~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 ------DISLE---SL---LEDYDAVFVGVGTYR 424 (654)
T ss_pred ------cCCHH---HH---HhcCCEEEEeCCCCC
Confidence 01121 11 246999999999754
No 224
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.44 E-value=0.00024 Score=79.24 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=65.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS 308 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~ 308 (535)
..++|+|||+|+.|+.+|..|++.|.+|+++++ +.+. + .++.++.+...+.+.+.|+++ .++.+. +
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~-- 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R-- 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C--
Confidence 357999999999999999999999999999998 6541 2 235566666667778889999 776541 1
Q ss_pred eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
.+++. +. ...+|.||+|+|..+.
T Consensus 269 ------dv~~~---~~---~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 269 ------DITLE---EL---QKEFDAVLLAVGAQKA 291 (652)
T ss_pred ------ccCHH---HH---HhhcCEEEEEcCCCCC
Confidence 01221 12 2359999999998754
No 225
>PRK06185 hypothetical protein; Provisional
Probab=97.43 E-value=0.002 Score=67.75 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=68.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc-----cC--------------c---------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK-----HF--------------D--------------------- 280 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~-----~~--------------~--------------------- 280 (535)
.+|+|||||++|+-+|..|++.|.+|+++++ +.+.. .+ +
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~~ 86 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGRT 86 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCeE
Confidence 5799999999999999999999999999997 43210 00 0
Q ss_pred ---------------------HHHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEE
Q psy14461 281 ---------------------QEMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVN 336 (535)
Q Consensus 281 ---------------------~~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~ 336 (535)
..+.+.+.+.+.+ .|+++ .+++++++..+ ++.+ .|.+.. .+|+ .++.+|.||.
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~-~~g~-~~i~a~~vI~ 163 (407)
T PRK06185 87 VTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRART-PDGP-GEIRADLVVG 163 (407)
T ss_pred EEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEc-CCCc-EEEEeCEEEE
Confidence 1112233333333 48999 99999999776 3443 344432 2443 3799999999
Q ss_pred ccCCCCC
Q psy14461 337 AMEKKFD 343 (535)
Q Consensus 337 a~G~~p~ 343 (535)
|.|....
T Consensus 164 AdG~~S~ 170 (407)
T PRK06185 164 ADGRHSR 170 (407)
T ss_pred CCCCchH
Confidence 9998764
No 226
>PRK10015 oxidoreductase; Provisional
Probab=97.43 E-value=0.0018 Score=68.74 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=67.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC------------------ccCc----------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL------------------KHFD---------------------- 280 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l------------------~~~~---------------------- 280 (535)
-.|+|||||+.|+-+|..|++.|.+|.++++ +.+. +.+.
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 3699999999999999999999999999987 4321 1000
Q ss_pred ----------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEc
Q psy14461 281 ----------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA 337 (535)
Q Consensus 281 ----------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a 337 (535)
..+.+.+.+..++.|+++ .+++|+.+..+ ++.+..... ++. ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~---~~~--~i~A~~VI~A 159 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA---GDD--ILEANVVILA 159 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe---CCe--EEECCEEEEc
Confidence 011123445556779999 99999998765 344432221 333 7999999999
Q ss_pred cCCCCC
Q psy14461 338 MEKKFD 343 (535)
Q Consensus 338 ~G~~p~ 343 (535)
.|....
T Consensus 160 dG~~s~ 165 (429)
T PRK10015 160 DGVNSM 165 (429)
T ss_pred cCcchh
Confidence 997543
No 227
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.0029 Score=67.22 Aligned_cols=133 Identities=17% Similarity=0.110 Sum_probs=83.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCc-EEEEEc-CcCCcc------------------------C--------cHHHHHHH
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVP-VTLVYS-RRLLKH------------------------F--------DQEMVRIL 287 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~-Vtlv~~-~~~l~~------------------------~--------~~~~~~~~ 287 (535)
.+|+|||+|++|+-+|..|++.|.. +.++++ +.+... + -.++..++
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~ 88 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI 88 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence 5799999999999999999999988 999988 532110 0 02256677
Q ss_pred HHhhhcCCeE--E-cceEEEEEEEeCC-CcEEEEEecCCCCCceEEEcCEEEEccCC--CCCCCCCCccccCeeecCCCc
Q psy14461 288 LSSLTKAGVS--I-QCCVIEKVISSFD-GMKGVRGFHPESKEPFADVFKTVVNAMEK--KFDFAALNLHHIGVDIKKKSY 361 (535)
Q Consensus 288 ~~~l~~~gV~--i-~~~~v~~i~~~~~-~~~~v~~~~~~~G~~~~~~~D~vi~a~G~--~p~~~~l~l~~~gl~~~~~G~ 361 (535)
...+++.++. + .++.|+.+..+++ +..+|++. +|...++.+|.|++|+|. .|+.+.+ .|++.- .|.
T Consensus 89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~---~~~~~~~~a~~vV~ATG~~~~P~iP~~----~G~~~f-~g~ 160 (443)
T COG2072 89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTS---DGGTGELTADFVVVATGHLSEPYIPDF----AGLDEF-KGR 160 (443)
T ss_pred HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEc---CCCeeeEecCEEEEeecCCCCCCCCCC----CCccCC-Cce
Confidence 7777766544 3 4555555554433 35678775 444223779999999997 3444333 123211 343
Q ss_pred eEcC----CCCCcCCCCEEEeCCcC
Q psy14461 362 VVCN----EKDQTSVGNIFAVGGIV 382 (535)
Q Consensus 362 i~vd----~~~~T~~~~IyA~GD~~ 382 (535)
+.=- +.....-++|-++|--+
T Consensus 161 ~~HS~~~~~~~~~~GKrV~VIG~Ga 185 (443)
T COG2072 161 ILHSADWPNPEDLRGKRVLVIGAGA 185 (443)
T ss_pred EEchhcCCCccccCCCeEEEECCCc
Confidence 2211 12233557899999655
No 228
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.41 E-value=0.0015 Score=70.97 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=63.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-C-cCC-----cc---------------Cc--------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R-RLL-----KH---------------FD-------------------- 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~-~~l-----~~---------------~~-------------------- 280 (535)
.|+|||||+.|+++|..+++.|.+|.++++ . .+. |. ++
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~s 85 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTS 85 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecccC
Confidence 699999999999999999999999999988 3 321 00 00
Q ss_pred --------------HHHHHHHHHhhhcC-CeEEcceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCC
Q psy14461 281 --------------QEMVRILLSSLTKA-GVSIQCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEK 340 (535)
Q Consensus 281 --------------~~~~~~~~~~l~~~-gV~i~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~ 340 (535)
..+...+.+.+++. |+++....+.++..+ ++++ .|.+ .+|. .+.++.||+|+|.
T Consensus 86 kGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e-~grV~GV~t---~dG~--~I~Ak~VIlATGT 155 (618)
T PRK05192 86 KGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVE-NGRVVGVVT---QDGL--EFRAKAVVLTTGT 155 (618)
T ss_pred CCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEec-CCEEEEEEE---CCCC--EEECCEEEEeeCc
Confidence 00112233344433 788855567777654 3444 3555 3676 8999999999994
No 229
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.41 E-value=0.0016 Score=68.07 Aligned_cols=97 Identities=18% Similarity=0.073 Sum_probs=67.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc----Cc------------------------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH----FD------------------------------------ 280 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~----~~------------------------------------ 280 (535)
.+|+|||||+.|+-+|..|++.|.+|+++++ +.+... +.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~~ 87 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRLI 87 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCCC
Confidence 4799999999999999999999999999998 432100 00
Q ss_pred -----------------------HHHHHHHHHhhhcCC-eEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEE
Q psy14461 281 -----------------------QEMVRILLSSLTKAG-VSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN 336 (535)
Q Consensus 281 -----------------------~~~~~~~~~~l~~~g-V~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~ 336 (535)
..+.+.+.+.+.+.+ +...++++.+++.+ ++.+.|+++ +|+ ++.+|.||.
T Consensus 88 ~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~a~~vI~ 161 (388)
T PRK07494 88 RAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPR-EDEVTVTLA---DGT--TLSARLVVG 161 (388)
T ss_pred CCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEc-CCeEEEEEC---CCC--EEEEeEEEE
Confidence 011222333344443 33477888888765 455667663 566 799999999
Q ss_pred ccCCCCCC
Q psy14461 337 AMEKKFDF 344 (535)
Q Consensus 337 a~G~~p~~ 344 (535)
|.|.....
T Consensus 162 AdG~~S~v 169 (388)
T PRK07494 162 ADGRNSPV 169 (388)
T ss_pred ecCCCchh
Confidence 99987643
No 230
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.40 E-value=0.00024 Score=69.63 Aligned_cols=37 Identities=14% Similarity=-0.043 Sum_probs=33.5
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS 124 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~ 124 (535)
.++++|||+|++|+.+|......+.+|+|+||+..++
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G 57 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG 57 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 4688999999999999999988899999999998664
No 231
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.39 E-value=0.0026 Score=66.54 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=67.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEcC--cCC-----------ccC------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSR--RLL-----------KHF------------------------------ 279 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~--~~l-----------~~~------------------------------ 279 (535)
+|+|||||+.|+-+|..|++.|.+|+++++. .+. ..+
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5999999999999999999999999999872 110 000
Q ss_pred --------c-HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecC---CCCCceEEEcCEEEEccCCCCC
Q psy14461 280 --------D-QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHP---ESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 280 --------~-~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~---~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
+ ..+.+.+.+...+.|+++ .. +++++..+ ++.+.+++.+. .+|+..++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~-~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERD-RDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEc-CCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 0 012223444456679999 55 58888765 45566766420 1233457999999999997654
No 232
>PRK09897 hypothetical protein; Provisional
Probab=97.37 E-value=0.0024 Score=69.17 Aligned_cols=97 Identities=9% Similarity=0.087 Sum_probs=65.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCCccC-----------------------cHHH------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLLKHF-----------------------DQEM------------ 283 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l~~~-----------------------~~~~------------ 283 (535)
++|+|||+|+.|+-+|..|.+.+ .+|+|+++ ..+.... ++.+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 47999999999999999998765 48999987 5432100 0000
Q ss_pred -------------------------HH---HHHHhhhcCC--eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcC
Q psy14461 284 -------------------------VR---ILLSSLTKAG--VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFK 332 (535)
Q Consensus 284 -------------------------~~---~~~~~l~~~g--V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D 332 (535)
.+ .+.+.+.+.| +.+ .+++|++++.. ++.+.+++. .+|. .+.+|
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~-~~g~~V~t~--~gg~--~i~aD 156 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQIT-NAGVMLATN--QDLP--SETFD 156 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEe-CCEEEEEEC--CCCe--EEEcC
Confidence 01 1122233455 677 78899999876 455666653 1344 78999
Q ss_pred EEEEccCCCCC
Q psy14461 333 TVVNAMEKKFD 343 (535)
Q Consensus 333 ~vi~a~G~~p~ 343 (535)
.||+|+|..++
T Consensus 157 ~VVLAtGh~~p 167 (534)
T PRK09897 157 LAVIATGHVWP 167 (534)
T ss_pred EEEECCCCCCC
Confidence 99999997554
No 233
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.37 E-value=0.0013 Score=70.46 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEcC
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR 273 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 273 (535)
-+|+|||+|+.|+.+|..++++|.+|+++++.
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 36999999999999999999999999999973
No 234
>PRK13748 putative mercuric reductase; Provisional
Probab=97.36 E-value=0.0021 Score=70.73 Aligned_cols=99 Identities=15% Similarity=0.033 Sum_probs=63.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEcCcCC---------------------------c---c-------Cc-HHH
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLL---------------------------K---H-------FD-QEM 283 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~l---------------------------~---~-------~~-~~~ 283 (535)
-.|+|||+|+.|+.+|..+++.|.+|.++++..+. + . .+ ..+
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 178 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSRL 178 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHHHH
Confidence 47999999999999999999999999999973210 0 0 00 111
Q ss_pred HHH------------HHHhhhcC-CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 284 VRI------------LLSSLTKA-GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 284 ~~~------------~~~~l~~~-gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
.+. ....+++. +|++ .+ ++..++ ...+.|.+. +|+..++.+|.+|+|||.+|....+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~---~~~~~v~~~---~g~~~~~~~d~lviAtGs~p~~p~i 249 (561)
T PRK13748 179 LAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKD---DQTLIVRLN---DGGERVVAFDRCLIATGASPAVPPI 249 (561)
T ss_pred HHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEec---CCEEEEEeC---CCceEEEEcCEEEEcCCCCCCCCCC
Confidence 111 11223333 6777 44 344332 344555552 5544579999999999999976543
No 235
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.35 E-value=0.0091 Score=62.04 Aligned_cols=54 Identities=9% Similarity=0.091 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
..+.+.+.+.+++.|+++ .++.|++++.+ ++.+.|.+ .+| ++.+|.||+|+|..
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~~v~~---~~~---~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPT-ELLVTVKT---TKG---SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeEEEEe---CCC---EEEeCEEEEecCcc
Confidence 455666777778889999 99999999875 45556655 234 68999999999964
No 236
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.0047 Score=57.74 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=95.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-------C-------------------------------cH
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-------F-------------------------------DQ 281 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-------~-------------------------------~~ 281 (535)
...|+|||+|++|+-+|.+|++.|.+|.++++ -.+-.. | ..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 35799999999999999999999999999998 443211 0 01
Q ss_pred HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecC---CCC---CceEEEcCEEEEccCCCCCCCCCCccc--
Q psy14461 282 EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHP---ESK---EPFADVFKTVVNAMEKKFDFAALNLHH-- 351 (535)
Q Consensus 282 ~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~---~~G---~~~~~~~D~vi~a~G~~p~~~~l~l~~-- 351 (535)
++...+....-+.|.++ ....+.++.-.++.++. |.++.+ ..+ ....+++++|+-|||.....-.+-.+.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~ 189 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP 189 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence 22223333344568899 88999987655332332 333211 011 124789999999999764432210011
Q ss_pred -cCeeecCCCceEcC--C-----CCCcCCCCEEEeCCcCC---CCCCcHHH--H-HHHHHHHHHHHhC
Q psy14461 352 -IGVDIKKKSYVVCN--E-----KDQTSVGNIFAVGGIVH---GKPNNASM--A-AISARLIIERLYG 405 (535)
Q Consensus 352 -~gl~~~~~G~i~vd--~-----~~~T~~~~IyA~GD~~~---~~~~~~~~--A-~~~g~~aa~~i~g 405 (535)
+++++-..+..+.+ | ..+--.||+|++|=+++ |.|...+. + .-.|+.||+.++.
T Consensus 190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e 257 (262)
T COG1635 190 ELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILE 257 (262)
T ss_pred ccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHH
Confidence 11211111112221 1 12225799999997764 44443332 2 4467888877654
No 237
>PRK06996 hypothetical protein; Provisional
Probab=97.33 E-value=0.0018 Score=67.91 Aligned_cols=98 Identities=9% Similarity=-0.012 Sum_probs=70.9
Q ss_pred CCcEEEECCChHHHHHHHHHHhCC----CcEEEEEc-CcCCcc------------------C------------------
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLG----VPVTLVYS-RRLLKH------------------F------------------ 279 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g----~~Vtlv~~-~~~l~~------------------~------------------ 279 (535)
..+|+|||||++|+-+|..|++.| .+|+++++ +..-+. +
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 357999999999999999999987 46999987 421000 0
Q ss_pred -----------------------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEE
Q psy14461 280 -----------------------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV 335 (535)
Q Consensus 280 -----------------------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi 335 (535)
-.++.+.+.+.+++.|+++ .++++++++.+ ++.+++++.+ .+| ++++.+|+||
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~-~~~v~v~~~~-~~g-~~~i~a~lvI 167 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQD-ADGVTLALGT-PQG-ARTLRARIAV 167 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeec-CCeEEEEECC-CCc-ceEEeeeEEE
Confidence 0234455666677788999 99999999765 4556777642 122 1379999999
Q ss_pred EccCCC
Q psy14461 336 NAMEKK 341 (535)
Q Consensus 336 ~a~G~~ 341 (535)
-|.|..
T Consensus 168 gADG~~ 173 (398)
T PRK06996 168 QAEGGL 173 (398)
T ss_pred ECCCCC
Confidence 999953
No 238
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.32 E-value=0.0025 Score=66.60 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=68.5
Q ss_pred CcEEEECCChHHHHHHHHHHhC---CCcEEEEEc-CcC---Ccc-------Cc-------------H-------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFL---GVPVTLVYS-RRL---LKH-------FD-------------Q------------- 281 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~---g~~Vtlv~~-~~~---l~~-------~~-------------~------------- 281 (535)
-+|+|||+|+.|+-+|..|++. |.+|+|+++ ... .+. +. +
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4699999999999999999998 999999998 311 010 00 0
Q ss_pred -----------------------------HHHHHHHHhhhc-CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEE
Q psy14461 282 -----------------------------EMVRILLSSLTK-AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADV 330 (535)
Q Consensus 282 -----------------------------~~~~~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~ 330 (535)
++.+.+.+.+.+ .|+++ .+++++++... ++.+.|++. +|. ++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~ 157 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERT-QGSVRVTLD---DGE--TLT 157 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeEEEEEC---CCC--EEE
Confidence 011122333333 47899 89999998765 455667663 565 789
Q ss_pred cCEEEEccCCCCCC
Q psy14461 331 FKTVVNAMEKKFDF 344 (535)
Q Consensus 331 ~D~vi~a~G~~p~~ 344 (535)
+|.||.|.|.....
T Consensus 158 a~~vI~AdG~~S~v 171 (395)
T PRK05732 158 GRLLVAADGSHSAL 171 (395)
T ss_pred eCEEEEecCCChhh
Confidence 99999999987653
No 239
>PRK06847 hypothetical protein; Provisional
Probab=97.31 E-value=0.0021 Score=66.76 Aligned_cols=34 Identities=12% Similarity=-0.070 Sum_probs=31.2
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
.+|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 5789999999999999998888999999999874
No 240
>KOG2495|consensus
Probab=97.30 E-value=0.00095 Score=67.97 Aligned_cols=107 Identities=17% Similarity=0.140 Sum_probs=76.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--ccC---------cHHHHHHHHHhhhcC--CeEEcceEEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--KHF---------DQEMVRILLSSLTKA--GVSIQCCVIEK 305 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--~~~---------~~~~~~~~~~~l~~~--gV~i~~~~v~~ 305 (535)
..|+|||+|+|..|+-+...|-..-.+|++|.+ +.++ |.+ -+.+.+.+....+.. ++++....-..
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~ 133 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECTK 133 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccEe
Confidence 357999999999999988888777789999998 6654 333 356667777766655 45556667777
Q ss_pred EEEeCCCcEEEEEecCC-CCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 306 VISSFDGMKGVRGFHPE-SKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 306 i~~~~~~~~~v~~~~~~-~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
|+++ ...+.+.....+ ...+..+.+|.+++|+|..||+...
T Consensus 134 iDp~-~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi 175 (491)
T KOG2495|consen 134 IDPD-NKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI 175 (491)
T ss_pred eccc-ccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCC
Confidence 7765 344444332111 2455789999999999999998654
No 241
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.29 E-value=0.0036 Score=65.71 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=64.4
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc------------cC--c---------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK------------HF--D--------------------------- 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~------------~~--~--------------------------- 280 (535)
+|+|||||+.|+-+|..|++.|.+|.++++ ..+.. .+ .
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 699999999999999999999999999998 43210 00 0
Q ss_pred -----------HHHHHHHHHhhhcCCeEE-cceEEEEEEEe--CCCcEEEEEecCC----CCCceEEEcCEEEEccCCCC
Q psy14461 281 -----------QEMVRILLSSLTKAGVSI-QCCVIEKVISS--FDGMKGVRGFHPE----SKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 281 -----------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~--~~~~~~v~~~~~~----~G~~~~~~~D~vi~a~G~~p 342 (535)
..+.+.+.+...+.|+++ .++ +..+... .++...|++.... .|++.++.+++||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 011122334455678888 664 6666421 1233455543211 15445799999999999755
Q ss_pred C
Q psy14461 343 D 343 (535)
Q Consensus 343 ~ 343 (535)
.
T Consensus 161 ~ 161 (398)
T TIGR02028 161 R 161 (398)
T ss_pred H
Confidence 3
No 242
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.28 E-value=0.0025 Score=67.20 Aligned_cols=95 Identities=15% Similarity=0.062 Sum_probs=65.4
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEEc-CcCCcc-----Cc-------------HHHH------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RRLLKH-----FD-------------QEMV------------------ 284 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~~l~~-----~~-------------~~~~------------------ 284 (535)
+|+|||||..|+-+|..|++.| .+|+|+++ +.+.+. +. +.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 59999998 543210 00 0000
Q ss_pred -----------------------HHHHHhhhc--CCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEcc
Q psy14461 285 -----------------------RILLSSLTK--AGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM 338 (535)
Q Consensus 285 -----------------------~~~~~~l~~--~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~ 338 (535)
..+.+.|.+ .++.+ .++++++++.+ ++.+.|.+. +|+ ++++|.||.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~-~~~~~v~~~---~g~--~~~ad~vVgAD 155 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQ-AEEVQVLFT---DGT--EYRCDLLIGAD 155 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEec-CCcEEEEEc---CCC--EEEeeEEEECC
Confidence 001111111 13457 88899999875 455777774 676 79999999999
Q ss_pred CCCCC
Q psy14461 339 EKKFD 343 (535)
Q Consensus 339 G~~p~ 343 (535)
|....
T Consensus 156 G~~S~ 160 (414)
T TIGR03219 156 GIKSA 160 (414)
T ss_pred CccHH
Confidence 97754
No 243
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.28 E-value=0.0021 Score=68.08 Aligned_cols=38 Identities=13% Similarity=-0.023 Sum_probs=33.8
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF 125 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~ 125 (535)
.++|+|||+||+|+.+|+.+...+.+|+|+||.+..+.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~ 42 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA 42 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence 36899999999999999999999999999999876543
No 244
>PRK11445 putative oxidoreductase; Provisional
Probab=97.27 E-value=0.0038 Score=64.36 Aligned_cols=97 Identities=14% Similarity=-0.012 Sum_probs=67.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC--c-------cCcHH------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL--K-------HFDQE------------------------------ 282 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l--~-------~~~~~------------------------------ 282 (535)
+|+|||+|+.|+-+|..|++. .+|+++++ +... + .+.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 599999999999999999999 99999998 5321 0 00000
Q ss_pred -------------------HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 283 -------------------MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 283 -------------------~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
+.+.+.+ ..+.|+++ .++.+++++.. ++.+.|.+. .+|+..++.+|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~-~~~~~v~~~--~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWRE-DDGYHVIFR--ADGWEQHITARYLVGADGANS 157 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEc-CCEEEEEEe--cCCcEEEEEeCEEEECCCCCc
Confidence 0011111 12467899 99999999876 455666653 256545789999999999875
Q ss_pred CC
Q psy14461 343 DF 344 (535)
Q Consensus 343 ~~ 344 (535)
..
T Consensus 158 ~v 159 (351)
T PRK11445 158 MV 159 (351)
T ss_pred HH
Confidence 43
No 245
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.27 E-value=0.0029 Score=73.93 Aligned_cols=103 Identities=17% Similarity=0.063 Sum_probs=69.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC-----------cHHHHHHHHHhhhcC-CeEE-cceEEEEE
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF-----------DQEMVRILLSSLTKA-GVSI-QCCVIEKV 306 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~-----------~~~~~~~~~~~l~~~-gV~i-~~~~v~~i 306 (535)
..+|+|||||+.|+.+|..+++.|.+|++++. +.+...+ ..++...+.+.+++. +|++ .+++|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 46799999999999999999999999999998 5543211 123334455556555 5999 99999887
Q ss_pred EEeCCCcEE-EE-Ee----cCCCC----CceEEEcCEEEEccCCCCCCC
Q psy14461 307 ISSFDGMKG-VR-GF----HPESK----EPFADVFKTVVNAMEKKFDFA 345 (535)
Q Consensus 307 ~~~~~~~~~-v~-~~----~~~~G----~~~~~~~D~vi~a~G~~p~~~ 345 (535)
... +.+. +. .. ...++ ...++.+|.||+|||..|...
T Consensus 243 ~~~--~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~ 289 (985)
T TIGR01372 243 YDH--NTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL 289 (985)
T ss_pred ecC--CeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence 531 2211 11 00 00011 112689999999999987654
No 246
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.27 E-value=0.0031 Score=66.17 Aligned_cols=96 Identities=17% Similarity=0.086 Sum_probs=70.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc------------------cCc----------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK------------------HFD---------------------- 280 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~------------------~~~---------------------- 280 (535)
-.|+|||+|+.|.-+|..|++.|.+|.++++ +.+.. ...
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 3699999999999999999999999999988 53311 011
Q ss_pred -----------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 281 -----------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 281 -----------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
..+-+.+.+..++.|+++ .+++++.+..++ +.+.+... .+. .++.++.||.|.|...
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~---~~~-~e~~a~~vI~AdG~~s 152 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVR---AGD-DEVRAKVVIDADGVNS 152 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEE---cCC-EEEEcCEEEECCCcch
Confidence 122234555667789999 999999998773 44443332 222 4899999999999543
No 247
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.25 E-value=0.0014 Score=67.45 Aligned_cols=34 Identities=12% Similarity=-0.015 Sum_probs=27.0
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEE-ecCCcc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQ-ERGSHL 123 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~li-e~~~~~ 123 (535)
||+|||+|.||+.||+.....+.+|+|+ .+.+.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i 35 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTI 35 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccc
Confidence 6899999999999999999999999999 444433
No 248
>KOG1336|consensus
Probab=97.25 E-value=0.0012 Score=68.24 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=73.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCC--cEEEEEcCcCCccCc-----------HHHHHHHHHhhhcCCeEE-cceEEEEE
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGV--PVTLVYSRRLLKHFD-----------QEMVRILLSSLTKAGVSI-QCCVIEKV 306 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~l~~~~-----------~~~~~~~~~~l~~~gV~i-~~~~v~~i 306 (535)
.++++|||+|+.|.-++..++..|- +++++.++..+|... .....+..+.+++.||++ .++.++.+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~ 153 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA 153 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEe
Confidence 5789999999999999999998874 788887644444322 233344455678899999 99999999
Q ss_pred EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461 307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA 345 (535)
Q Consensus 307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~ 345 (535)
+-. ..+|.+ .+|+ .+++|.+++|||..|+..
T Consensus 154 D~~---~K~l~~---~~Ge--~~kys~LilATGs~~~~l 184 (478)
T KOG1336|consen 154 DLA---SKTLVL---GNGE--TLKYSKLIIATGSSAKTL 184 (478)
T ss_pred ecc---ccEEEe---CCCc--eeecceEEEeecCccccC
Confidence 864 245666 4788 899999999999966653
No 249
>PRK10015 oxidoreductase; Provisional
Probab=97.24 E-value=0.0024 Score=67.74 Aligned_cols=37 Identities=14% Similarity=-0.065 Sum_probs=33.5
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF 125 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~ 125 (535)
++|+|||+||+|+++|+.+...+.+|+|+||++.++.
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 6899999999999999999999999999999886543
No 250
>PRK14727 putative mercuric reductase; Provisional
Probab=97.23 E-value=0.0038 Score=67.26 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=32.2
Q ss_pred ccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 237 ~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
....+-+++|||+|+.|+.+|..++++|.+|+++++
T Consensus 12 ~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~ 47 (479)
T PRK14727 12 RSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEG 47 (479)
T ss_pred cCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEc
Confidence 344556899999999999999999999999999987
No 251
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.22 E-value=0.0032 Score=65.83 Aligned_cols=32 Identities=16% Similarity=-0.024 Sum_probs=29.9
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecC
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERG 120 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~ 120 (535)
++|+|||+||+|+.+|+.+...+.+|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 47899999999999999988889999999997
No 252
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.22 E-value=0.0035 Score=65.26 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=68.3
Q ss_pred cEEEECCChHHHHHHHHH--HhCCCcEEEEEc-CcC-Ccc------Cc--------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATL--NFLGVPVTLVYS-RRL-LKH------FD-------------------------------- 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l--~~~g~~Vtlv~~-~~~-l~~------~~-------------------------------- 280 (535)
.|+|||+|+.|+-+|..| ++.|.+|.++++ +.. .+. +.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 489999999999999999 778999999987 433 110 00
Q ss_pred ------HHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 281 ------QEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 281 ------~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
.++.+.+.+.+.+.|+.+.+..|++|+.. ++...|++ .+|+ ++.++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~-~~~~~v~~---~~g~--~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEET-GDGVLVVL---ADGR--TIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEec-CceEEEEE---CCCC--EEEeeEEEECCCcccc
Confidence 23334455555645554488899999876 34455666 3787 8999999999996654
No 253
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.20 E-value=0.0036 Score=66.62 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=69.5
Q ss_pred cEEEECCChHHHHHHHHHHh----CCCcEEEEEc-CcCCcc-----------------Cc--------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNF----LGVPVTLVYS-RRLLKH-----------------FD-------------------- 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~----~g~~Vtlv~~-~~~l~~-----------------~~-------------------- 280 (535)
+|+|||||++|+-+|..|++ .|.+|+++++ +.+... +.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 59999999999999999998 7999999997 421100 00
Q ss_pred -----------------------------------HHHHHHHHHhhhcC---CeEE-cceEEEEEEEe------CCCcEE
Q psy14461 281 -----------------------------------QEMVRILLSSLTKA---GVSI-QCCVIEKVISS------FDGMKG 315 (535)
Q Consensus 281 -----------------------------------~~~~~~~~~~l~~~---gV~i-~~~~v~~i~~~------~~~~~~ 315 (535)
..+.+.+.+.+.+. ++++ .++++++++.. .+..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 11222333444444 4899 99999999642 124466
Q ss_pred EEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461 316 VRGFHPESKEPFADVFKTVVNAMEKKFDFA 345 (535)
Q Consensus 316 v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~ 345 (535)
|++. +|+ ++.+|+||-|-|......
T Consensus 162 v~~~---~g~--~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 162 ITLS---DGQ--VLYTKLLIGADGSNSNVR 186 (437)
T ss_pred EEEc---CCC--EEEeeEEEEecCCCChhH
Confidence 7763 677 899999999999887654
No 254
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.19 E-value=0.0031 Score=67.58 Aligned_cols=93 Identities=19% Similarity=0.114 Sum_probs=64.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC 168 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (535)
.+++|||+|..|+..|......+.+|+|+++.+.+ +++. +. ++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~------l~~~----------------------~~-~~~~------ 215 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI------LPGE----------------------DA-EVSK------ 215 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC------CCCC----------------------CH-HHHH------
Confidence 46899999999999998777778899999998754 1211 10 1111
Q ss_pred HHHHHHHHHHHHhcCcEEEEeE-EEEe--cCCEEEEc---e--eEEEcceEEEeeCceecC
Q psy14461 169 IRAKNDSMRELKALGIDIVRTA-AAFT--NPHTIKLS---N--RSVTGFNFLLAVERRCLP 221 (535)
Q Consensus 169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~~v~~~---~--~~~~~d~lViATGs~p~~ 221 (535)
.+.+.+++.||+++.++ +..+ ++..+.+. + .++.+|.||+|+|.+|..
T Consensus 216 -----~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~ 271 (461)
T TIGR01350 216 -----VVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNT 271 (461)
T ss_pred -----HHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccC
Confidence 12355677899999874 3322 23444442 2 479999999999999976
No 255
>PLN02546 glutathione reductase
Probab=97.17 E-value=0.0028 Score=69.24 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
.|+|||+|+.|+.+|..++++|.+|.++++
T Consensus 81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 81 DLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 599999999999999999999999999993
No 256
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.16 E-value=0.0006 Score=72.28 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=30.8
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK 127 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~ 127 (535)
||+|+|+|++|+.||+.....+.+|+|+|+.+.+++..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~ 38 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMA 38 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcc
Confidence 68999999999999999999999999999999876544
No 257
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.16 E-value=0.019 Score=61.83 Aligned_cols=63 Identities=14% Similarity=0.019 Sum_probs=45.6
Q ss_pred cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
...+...+.+.+++.|+++ .+++|++++..+++.+.+++.++.+|+..++.+|.||+|.|.-.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 3566777777888889999 99999999875334556654332345434689999999999643
No 258
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.15 E-value=0.0076 Score=64.24 Aligned_cols=105 Identities=14% Similarity=0.082 Sum_probs=67.4
Q ss_pred cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc------------c--CcH---------------------
Q psy14461 238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK------------H--FDQ--------------------- 281 (535)
Q Consensus 238 ~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~------------~--~~~--------------------- 281 (535)
....-+|+|||||+.|+-+|..|++.|.+|.++++ ..... . +++
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~ 115 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD 115 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEE
Confidence 33445899999999999999999999999999997 32100 0 000
Q ss_pred -----------------HHHHHHHHhhhcCCeEE-cceEEEEEEEeC--CCcEEEEEecC----CCCCceEEEcCEEEEc
Q psy14461 282 -----------------EMVRILLSSLTKAGVSI-QCCVIEKVISSF--DGMKGVRGFHP----ESKEPFADVFKTVVNA 337 (535)
Q Consensus 282 -----------------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~--~~~~~v~~~~~----~~G~~~~~~~D~vi~a 337 (535)
.+.+.+.+...+.|+++ .+ .+.+++... ++.+.|++.+. .+|+..++.+|+||-|
T Consensus 116 ~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgA 194 (450)
T PLN00093 116 IGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGA 194 (450)
T ss_pred ecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEc
Confidence 11123344445678888 65 466665321 23455665421 0144458999999999
Q ss_pred cCCCCC
Q psy14461 338 MEKKFD 343 (535)
Q Consensus 338 ~G~~p~ 343 (535)
.|....
T Consensus 195 DG~~S~ 200 (450)
T PLN00093 195 DGANSR 200 (450)
T ss_pred CCcchH
Confidence 997543
No 259
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.12 E-value=0.0005 Score=72.75 Aligned_cols=115 Identities=14% Similarity=0.048 Sum_probs=81.8
Q ss_pred eEEEcceEEEeeCceecC--CCCCCceechhhHHhccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---
Q psy14461 204 RSVTGFNFLLAVERRCLP--EPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK--- 277 (535)
Q Consensus 204 ~~~~~d~lViATGs~p~~--~i~G~~v~~~~~~~~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~--- 277 (535)
..+.++.|..+.|..... .+++. ..-...+++|+|||+|+.|+.+|..|++.|.+||++++ +.+..
T Consensus 92 ~~v~i~~le~~i~d~~~~~g~i~~~--------~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 92 LPVNIGALERAIGDKADREGWIPGE--------LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLL 163 (457)
T ss_pred CchhhhhHHHHHhhHHHHhCCCCCC--------CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence 556777777777765443 24430 11123358999999999999999999999999999998 65422
Q ss_pred ------cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 278 ------HFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 278 ------~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
.++.++.+...+.|++.|++| .++++-. .++++ . ..-++|+|++++|..
T Consensus 164 yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---------~it~~----~--L~~e~Dav~l~~G~~ 219 (457)
T COG0493 164 YGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---------DITLE----E--LLKEYDAVFLATGAG 219 (457)
T ss_pred ecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---------cCCHH----H--HHHhhCEEEEecccc
Confidence 346788889999999999999 8887631 12221 0 123459999999964
No 260
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.12 E-value=0.0013 Score=72.29 Aligned_cols=88 Identities=18% Similarity=0.264 Sum_probs=62.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc---------cCcHHHHHHHHHhhhcCCeEE-cceEE-EEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK---------HFDQEMVRILLSSLTKAGVSI-QCCVI-EKVI 307 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~---------~~~~~~~~~~~~~l~~~gV~i-~~~~v-~~i~ 307 (535)
.+++|+|||+|++|+.+|..|++.|.+|+++++ +.+.. .++.++...-.+.+++.|+++ .+..+ ..+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 468999999999999999999999999999997 54421 234455555455667789998 77655 2221
Q ss_pred EeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 308 SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 308 ~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
.. .. ...+|.|++|+|..+.
T Consensus 216 ~~--------------~~--~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 216 LE--------------QL--EGEFDAVFVAIGAQLG 235 (564)
T ss_pred HH--------------HH--HhhCCEEEEeeCCCCC
Confidence 10 00 1247999999998754
No 261
>PLN02697 lycopene epsilon cyclase
Probab=97.11 E-value=0.0021 Score=69.47 Aligned_cols=34 Identities=18% Similarity=-0.097 Sum_probs=30.9
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGS 121 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~ 121 (535)
.++|+|||+|++|+++|......+.+|+|+|+..
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~ 141 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 141 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence 4799999999999999998888899999999864
No 262
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.11 E-value=0.0035 Score=65.80 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=30.9
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
++|+|||+||+|.++|+.+...+.+|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3689999999999999999899999999999764
No 263
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.11 E-value=0.0012 Score=74.77 Aligned_cols=34 Identities=21% Similarity=0.034 Sum_probs=31.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
..+++|+|||+|+.|+.+|..|++.|.+||++++
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence 3578999999999999999999999999999997
No 264
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.10 E-value=0.0075 Score=63.63 Aligned_cols=58 Identities=26% Similarity=0.206 Sum_probs=40.2
Q ss_pred HHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 285 RILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 285 ~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
..+.+.+++.|+++ .++.++++..+ ++++ -|..++..+|+..++.++.||+|+|-...
T Consensus 145 ~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 145 EALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 34445567788999 99999999886 5655 36666335788788999999999986554
No 265
>PRK13984 putative oxidoreductase; Provisional
Probab=97.10 E-value=0.0012 Score=73.32 Aligned_cols=88 Identities=16% Similarity=0.101 Sum_probs=64.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC-------c--cCcHHHHHHHHHhhhcCCeEE-cceEEEEEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL-------K--HFDQEMVRILLSSLTKAGVSI-QCCVIEKVIS 308 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l-------~--~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~ 308 (535)
..++|+|||+|+.|+.+|..|+++|.+|+++++ +.+. + .+.+++.....+.+++.|+++ .++.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 358 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK--- 358 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC---
Confidence 467899999999999999999999999999998 5431 1 134455555556778889999 8877631
Q ss_pred eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
+ +.++ +. ...+|.||+|+|..+
T Consensus 359 ~------~~~~---~~---~~~yD~vilAtGa~~ 380 (604)
T PRK13984 359 D------IPLE---EL---REKHDAVFLSTGFTL 380 (604)
T ss_pred c------CCHH---HH---HhcCCEEEEEcCcCC
Confidence 0 1111 11 357999999999763
No 266
>PTZ00058 glutathione reductase; Provisional
Probab=97.10 E-value=0.0054 Score=67.02 Aligned_cols=30 Identities=23% Similarity=0.209 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
.|+|||+|+.|..+|..+++.|.+|.+|++
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk 79 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAKVALVEK 79 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEec
Confidence 699999999999999999999999999986
No 267
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.09 E-value=0.0039 Score=66.82 Aligned_cols=93 Identities=19% Similarity=0.119 Sum_probs=64.0
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC 168 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (535)
.+++|||+|..|+..|......+.+|+|+++.+.+ ++.. +. ++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~------l~~~----------------------d~-~~~------- 210 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL------LPRE----------------------EP-EIS------- 210 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC------CCcc----------------------CH-HHH-------
Confidence 56899999999999988777788899999998743 1111 11 111
Q ss_pred HHHHHHHHHHHHhcCcEEEEeE-EEEec--CC--EEEEc----eeEEEcceEEEeeCceecC
Q psy14461 169 IRAKNDSMRELKALGIDIVRTA-AAFTN--PH--TIKLS----NRSVTGFNFLLAVERRCLP 221 (535)
Q Consensus 169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~--~v~~~----~~~~~~d~lViATGs~p~~ 221 (535)
..+...++..||+++.++ +..+. +. .+.+. ..++.+|.||+|+|.+|..
T Consensus 211 ----~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 211 ----AAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred ----HHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 122356677899998875 33322 22 23332 1579999999999999987
No 268
>PLN02985 squalene monooxygenase
Probab=97.09 E-value=0.0071 Score=65.57 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=29.8
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
.-+|+|||||..|+-+|..|++.|.+|+++++
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr 74 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIER 74 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 34799999999999999999999999999997
No 269
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.09 E-value=0.0079 Score=63.73 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccc
Q psy14461 71 ENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSAL 150 (535)
Q Consensus 71 ~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~ 150 (535)
.+.+.+..+.... ..+++|+|+|+.|+..|......+.+|+++++.+.+.. +..
T Consensus 124 ~~~~~~~~l~~~~----~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-----~~~----------------- 177 (427)
T TIGR03385 124 DTDAIKQYIDKNK----VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-----KLF----------------- 177 (427)
T ss_pred HHHHHHHHHhhcC----CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-----ccc-----------------
Confidence 4554454443221 13579999999999988777777889999998774310 000
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEEEE-ceeEEEcceEEEeeCceecC
Q psy14461 151 NVTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTA-AAFTN--PHTIKL-SNRSVTGFNFLLAVERRCLP 221 (535)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v~~-~~~~~~~d~lViATGs~p~~ 221 (535)
+ ..+. ..+.+.+++.||+++.+. +..++ ...+.+ ++.++.+|.||+|+|.+|..
T Consensus 178 -----~-~~~~-----------~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 178 -----D-EEMN-----------QIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNS 235 (427)
T ss_pred -----C-HHHH-----------HHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCH
Confidence 1 0111 112355677899998764 33333 222233 34679999999999998875
No 270
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.09 E-value=0.043 Score=59.17 Aligned_cols=62 Identities=18% Similarity=0.062 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhcCC-eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 281 QEMVRILLSSLTKAG-VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 281 ~~~~~~~~~~l~~~g-V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
..+.+.+.+.+++.| +++ .+++|++++..+++.+.+++.++.+|+..++.+|.||+|.|.-.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 456677777777776 999 99999999875344466665422345433689999999998643
No 271
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.07 E-value=0.0083 Score=54.16 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=31.9
Q ss_pred CCeEE--cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC
Q psy14461 294 AGVSI--QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK 340 (535)
Q Consensus 294 ~gV~i--~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~ 340 (535)
.|+++ ...+|+++... ++...|.+. +|. .+.+|.|++|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~-~~~~~v~~~---~g~--~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRD-DDGYRVVTA---DGQ--SIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEc-CCcEEEEEC---CCC--EEEeCEEEECCCC
Confidence 46676 67789999887 455666663 777 7899999999995
No 272
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.07 E-value=0.025 Score=60.61 Aligned_cols=54 Identities=20% Similarity=0.080 Sum_probs=40.4
Q ss_pred cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 280 DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 280 ~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
+..+...+.+.+++.|+++ .++.|++++. ++.+.|+. .+| ++.+|.||+|+|.-
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~~~~v~t---~~g---~v~A~~VV~Atga~ 236 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE--GQPAVVRT---PDG---QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee--CCceEEEe---CCc---EEECCEEEEccccc
Confidence 3456677777888899999 9999999975 23344554 355 58999999999853
No 273
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.06 E-value=0.029 Score=58.15 Aligned_cols=55 Identities=11% Similarity=0.011 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
..+...+.+.+.+.|+++ .+++++++..+ ++.+.|+. .+| ++.+|.||+|+|...
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~v~~---~~g---~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDGVTVTT---ADG---TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCeEEEEe---CCC---EEEeeEEEEecCcch
Confidence 445555666677789999 99999999875 45556655 245 589999999999753
No 274
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.05 E-value=0.014 Score=60.22 Aligned_cols=82 Identities=16% Similarity=0.031 Sum_probs=61.1
Q ss_pred HHHhCCCcEEEEEc--CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEE
Q psy14461 259 TLNFLGVPVTLVYS--RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV 335 (535)
Q Consensus 259 ~l~~~g~~Vtlv~~--~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi 335 (535)
.++..|+...++.- +++....-+.+.+.+++.+++.|+++ ++++|.+|+..++....|.+ .+|+ ++++|.|+
T Consensus 149 e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~---~~g~--~i~~~~vv 223 (486)
T COG2509 149 EFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKL---TKGE--EIEADYVV 223 (486)
T ss_pred HHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEc---cCCc--EEecCEEE
Confidence 44455666666654 66665556788899999999999999 99999999876322234555 3787 89999999
Q ss_pred EccCCCCCCC
Q psy14461 336 NAMEKKFDFA 345 (535)
Q Consensus 336 ~a~G~~p~~~ 345 (535)
+|+|+.....
T Consensus 224 lA~Grsg~dw 233 (486)
T COG2509 224 LAPGRSGRDW 233 (486)
T ss_pred EccCcchHHH
Confidence 9999876543
No 275
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.05 E-value=0.0074 Score=65.42 Aligned_cols=100 Identities=17% Similarity=0.137 Sum_probs=69.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-------C--------------------------------cH
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-------F--------------------------------DQ 281 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-------~--------------------------------~~ 281 (535)
-.|+|||+|..|+-+|..+++.|.+|.++++ +..... + ++
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d~ 141 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTNDK 141 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 3699999999999999999999999999987 432100 0 00
Q ss_pred -------------------------------------------------HHHHHHHHhhhcCCeEE-cceEEEEEEEeCC
Q psy14461 282 -------------------------------------------------EMVRILLSSLTKAGVSI-QCCVIEKVISSFD 311 (535)
Q Consensus 282 -------------------------------------------------~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~ 311 (535)
.+...+.+.+++.|+++ +++.++++..+ +
T Consensus 142 ~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~ 220 (506)
T PRK06481 142 ALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK-D 220 (506)
T ss_pred HHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec-C
Confidence 12233344456678999 99999999765 4
Q ss_pred CcE-EEEEecCCCCCceEEEcCEEEEccC-CCCC
Q psy14461 312 GMK-GVRGFHPESKEPFADVFKTVVNAME-KKFD 343 (535)
Q Consensus 312 ~~~-~v~~~~~~~G~~~~~~~D~vi~a~G-~~p~ 343 (535)
+++ .|.+.. .+|+..++.+|.||+|+| +.+|
T Consensus 221 g~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 221 GKVTGVKVKI-NGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred CEEEEEEEEe-CCCeEEEEecCeEEEeCCCcccC
Confidence 544 244432 244555799999999997 5554
No 276
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.05 E-value=0.0084 Score=66.74 Aligned_cols=100 Identities=13% Similarity=0.050 Sum_probs=68.7
Q ss_pred CcEEEECCChHHHHHHHHHHhC-CCcEEEEEc-CcCCcc-----C------------------------------c----
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFL-GVPVTLVYS-RRLLKH-----F------------------------------D---- 280 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~-~~~l~~-----~------------------------------~---- 280 (535)
-+|+|||||++|+-+|..|+++ |.+|+|+++ +.+... + +
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~~ 112 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDPA 112 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCCc
Confidence 4799999999999999999995 999999987 532110 0 0
Q ss_pred ----------------------------HHHHHHHHHhhhcCC--eEE-cceEEEEEEEeCC--CcEEEEEecCC---CC
Q psy14461 281 ----------------------------QEMVRILLSSLTKAG--VSI-QCCVIEKVISSFD--GMKGVRGFHPE---SK 324 (535)
Q Consensus 281 ----------------------------~~~~~~~~~~l~~~g--V~i-~~~~v~~i~~~~~--~~~~v~~~~~~---~G 324 (535)
..+.+.+.+.+.+.+ +++ .++++++++.+++ ..++|++++.+ +|
T Consensus 113 ~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g 192 (634)
T PRK08294 113 DPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEG 192 (634)
T ss_pred cccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCC
Confidence 012222334444444 577 8899999976522 24777776421 46
Q ss_pred CceEEEcCEEEEccCCC
Q psy14461 325 EPFADVFKTVVNAMEKK 341 (535)
Q Consensus 325 ~~~~~~~D~vi~a~G~~ 341 (535)
+++++.+|+||-|-|.+
T Consensus 193 ~~~tv~A~~lVGaDGa~ 209 (634)
T PRK08294 193 EEETVRAKYVVGCDGAR 209 (634)
T ss_pred ceEEEEeCEEEECCCCc
Confidence 54689999999999964
No 277
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.04 E-value=0.0087 Score=62.46 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=36.7
Q ss_pred CceEcCCCCCcCCCCEEEeCCcCC----CCCCcHH----HHHHHHHHHHHHHhCCC
Q psy14461 360 SYVVCNEKDQTSVGNIFAVGGIVH----GKPNNAS----MAAISARLIIERLYGMQ 407 (535)
Q Consensus 360 G~i~vd~~~~T~~~~IyA~GD~~~----~~~~~~~----~A~~~g~~aa~~i~g~~ 407 (535)
|.|.||.+.||+.|++||+|.++. |.-.++. .+.--|+.||++|.+..
T Consensus 342 GGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 342 GGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred ccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 668889999999999999999986 2233444 35666888888888753
No 278
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.03 E-value=0.0087 Score=65.52 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
-.|+|||||.+|+-+|..|+++|.+|+|+++
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk 37 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVER 37 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEEC
Confidence 4699999999999999999999999999987
No 279
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.99 E-value=0.0094 Score=64.91 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=63.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC---c---------------cC---c--------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL---K---------------HF---D-------------------- 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l---~---------------~~---~-------------------- 280 (535)
.|+|||+|..|+++|..+++.|.+|.++++ .... + .+ +
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 489999999999999999999999999986 3211 0 00 0
Q ss_pred --------------HHHHHHHHHhhhcC-CeEEcceEEEEEEEeCCCc-EEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 281 --------------QEMVRILLSSLTKA-GVSIQCCVIEKVISSFDGM-KGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 281 --------------~~~~~~~~~~l~~~-gV~i~~~~v~~i~~~~~~~-~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
..+...+.+.+++. ++.+....+.++..++++. ..|.+ .+|. .+.+|.||+|+|.-.
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t---~~G~--~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVT---QDGL--KFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEE---CCCC--EEECCEEEEccCccc
Confidence 01112344455555 7888444666664431233 34665 3676 799999999999764
No 280
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.99 E-value=0.014 Score=63.07 Aligned_cols=95 Identities=9% Similarity=-0.046 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHhCCCcEEEEEc-CcC---CccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEe-CC--CcE-EEEEecC
Q psy14461 251 LMAVEIAATLNFLGVPVTLVYS-RRL---LKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISS-FD--GMK-GVRGFHP 321 (535)
Q Consensus 251 ~~g~e~A~~l~~~g~~Vtlv~~-~~~---l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~-~~--~~~-~v~~~~~ 321 (535)
.+|.|+..++.+.=.++.-+.. ..+ -....+.+...+.+.++++||+| ++++|+++..+ ++ +.+ .+.+..
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~- 270 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR- 270 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe-
Confidence 4788888888776211111111 111 11123678888999999999999 99999999864 22 222 244442
Q ss_pred CCCCc---eEEEcCEEEEccCCCCCCCCC
Q psy14461 322 ESKEP---FADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 322 ~~G~~---~~~~~D~vi~a~G~~p~~~~l 347 (535)
+|+. ...+.|+||+++|.-.....+
T Consensus 271 -~~~~~~I~l~~~DlVivTnGs~t~ns~~ 298 (576)
T PRK13977 271 -NGKEETIDLTEDDLVFVTNGSITESSTY 298 (576)
T ss_pred -CCceeEEEecCCCEEEEeCCcCcccccc
Confidence 3332 234699999999965544333
No 281
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0024 Score=50.66 Aligned_cols=53 Identities=26% Similarity=0.264 Sum_probs=36.0
Q ss_pred cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461 59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD 114 (535)
Q Consensus 59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V 114 (535)
.|.+|+++.|| ||.++|+++.+.|..++.++ +.-..+.-.+..+....+.++|
T Consensus 2 ~v~iyt~~~CP-yC~~ak~~L~~~g~~~~~i~--~~~~~~~~~~~~~~~~~g~~tv 54 (80)
T COG0695 2 NVTIYTKPGCP-YCKRAKRLLDRKGVDYEEID--VDDDEPEEAREMVKRGKGQRTV 54 (80)
T ss_pred CEEEEECCCCc-hHHHHHHHHHHcCCCcEEEE--ecCCcHHHHHHHHHHhCCCCCc
Confidence 47899999999 99999999999998764333 3333223244555555444443
No 282
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.97 E-value=0.0036 Score=65.02 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=60.3
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCCc-----cCcHHHH----H-------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLLK-----HFDQEMV----R------------------------- 285 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l~-----~~~~~~~----~------------------------- 285 (535)
.|+|||||..|+.+|..|++. |.+|.++++ +.+.+ .++.++. .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 489999999999999999987 999999998 63322 1111111 0
Q ss_pred ---------HHHHh-hhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 286 ---------ILLSS-LTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 286 ---------~~~~~-l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
.+.+. +++.+..+ .+.+|++++. +. |++. +|+ ++.+|.||.|.|..+.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~---~~--v~l~---dg~--~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA---DG--VDLA---PGT--RINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC---CE--EEEC---CCC--EEEeeEEEECCCCCCC
Confidence 01111 11112336 6788888842 33 4443 677 8999999999998864
No 283
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.97 E-value=0.0034 Score=65.95 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=29.3
Q ss_pred EeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 92 DRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 92 ~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
+|||+|++|+.+|+.+...+.+|+|+|+.+.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence 58999999999999998899999999998864
No 284
>PTZ00062 glutaredoxin; Provisional
Probab=96.97 E-value=0.0018 Score=60.96 Aligned_cols=65 Identities=26% Similarity=0.312 Sum_probs=50.4
Q ss_pred CChhHHHHhhhcCCcEEEEeC-----CCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461 45 ETPPAYISRLSYENRILIFTH-----AVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD 114 (535)
Q Consensus 45 ~~l~~~~~~~i~~~~v~v~~k-----~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V 114 (535)
..+..+++.++.+++|++|+| ++|| +|.+++.++.+.+.++..++|. .... ++.++....+..+|
T Consensus 100 ~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~-~C~~~k~~L~~~~i~y~~~DI~---~d~~-~~~~l~~~sg~~Tv 169 (204)
T PTZ00062 100 EDTVEKIERLIRNHKILLFMKGSKTFPFCR-FSNAVVNMLNSSGVKYETYNIF---EDPD-LREELKVYSNWPTY 169 (204)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCCCCh-hHHHHHHHHHHcCCCEEEEEcC---CCHH-HHHHHHHHhCCCCC
Confidence 346788999999999999998 5899 9999999999999887655543 3344 67777776655444
No 285
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.96 E-value=0.0054 Score=64.97 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=64.9
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC 168 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (535)
.+++|||+|+.|+.-|-.....+.+|||+|+.+.+ +|.. |
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i------Lp~~----------------------D------------ 213 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI------LPGE----------------------D------------ 213 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC------CCcC----------------------C------------
Confidence 56899999999999887777789999999999865 3322 1
Q ss_pred HHHHHHHHHHHHhcCcEEEEeEEEE-e--cCC--EEEEce-e--EEEcceEEEeeCceecC
Q psy14461 169 IRAKNDSMRELKALGIDIVRTAAAF-T--NPH--TIKLSN-R--SVTGFNFLLAVERRCLP 221 (535)
Q Consensus 169 ~~~~~~~~~~~~~~gV~~~~g~~~~-~--~~~--~v~~~~-~--~~~~d~lViATGs~p~~ 221 (535)
+++...+...+++.|++++.++... . +.. .+.+.+ . .+.+|++++|+|-+|+.
T Consensus 214 ~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 214 PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 1122223356677789888776332 2 122 244433 2 68899999999999987
No 286
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.96 E-value=0.01 Score=64.43 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=37.0
Q ss_pred hhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 291 LTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 291 l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
..+.|+++ .+++|+++..+ ++.+.|++.+..+|+..++.++.||.|+|.-
T Consensus 165 A~~~Ga~i~~~~~V~~i~~~-~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~w 215 (508)
T PRK12266 165 AAERGAEILTRTRVVSARRE-NGLWHVTLEDTATGKRYTVRARALVNAAGPW 215 (508)
T ss_pred HHHcCCEEEcCcEEEEEEEe-CCEEEEEEEEcCCCCEEEEEcCEEEECCCcc
Confidence 34568999 99999999765 4556666653335655679999999999963
No 287
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.96 E-value=0.0081 Score=64.42 Aligned_cols=33 Identities=9% Similarity=0.017 Sum_probs=30.7
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS 121 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~ 121 (535)
++|+|||+|.+|+.+|+.....+.+|+|+||..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 578999999999999999988899999999975
No 288
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.92 E-value=0.008 Score=64.67 Aligned_cols=93 Identities=13% Similarity=0.074 Sum_probs=62.7
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC 168 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (535)
.+++|+|+|..|+..|......+.+|+|+++.+.+ ++.. + .++..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~------l~~~----------------------d-~~~~~------ 228 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF------LAAA----------------------D-EQVAK------ 228 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc------CCcC----------------------C-HHHHH------
Confidence 47899999999999987777778999999998743 1111 1 11111
Q ss_pred HHHHHHHHHHHHhcCcEEEEeE-EEEec--CCEE--EEce-----eEEEcceEEEeeCceecC
Q psy14461 169 IRAKNDSMRELKALGIDIVRTA-AAFTN--PHTI--KLSN-----RSVTGFNFLLAVERRCLP 221 (535)
Q Consensus 169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~v--~~~~-----~~~~~d~lViATGs~p~~ 221 (535)
...+.+++.||+++.++ +..++ +..+ .+.+ .++.+|.|++|+|.+|..
T Consensus 229 -----~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 229 -----EAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred -----HHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence 12245667899998874 33332 2333 3222 469999999999999976
No 289
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.92 E-value=0.0029 Score=68.43 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
.|+|||+|+.|+.+|..++++|.+|.++++
T Consensus 7 DviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 7 DLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 699999999999999999999999999995
No 290
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.92 E-value=0.042 Score=60.65 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=31.6
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
.||+|||+|.||+.||+.....+.+|+|+||....
T Consensus 8 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~ 42 (588)
T PRK08958 8 FDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT 42 (588)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 57999999999999999998888999999998643
No 291
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.91 E-value=0.0025 Score=66.69 Aligned_cols=33 Identities=36% Similarity=0.387 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL 275 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~ 275 (535)
+|+|||||.+|+|+|..|++.|.+|+++++ +..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 699999999999999999999999999997 554
No 292
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.91 E-value=0.00099 Score=70.62 Aligned_cols=95 Identities=25% Similarity=0.219 Sum_probs=27.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc--------C----------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH--------F---------------------------------- 279 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~--------~---------------------------------- 279 (535)
.|+|||||+.|+-+|..+++.|.+|.|+++ +.+... +
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 489999999999999999999999999998 644110 0
Q ss_pred -------cH-HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCC
Q psy14461 280 -------DQ-EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEK 340 (535)
Q Consensus 280 -------~~-~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~ 340 (535)
++ .+...+.+.+++.||++ .++.+.++..+ ++++ .|++.+ .+| ..++.++.+|-|+|.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~-~~g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVET-KSG-RKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc-ccccccccccccccc
Confidence 00 01112344556779999 99999999876 4444 466543 234 458999999999994
No 293
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.0016 Score=60.71 Aligned_cols=41 Identities=10% Similarity=-0.074 Sum_probs=35.9
Q ss_pred ceEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461 86 FAVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR 126 (535)
Q Consensus 86 ~~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~ 126 (535)
+...||+|+|+||+|+.||.++...+.+|++||+.-.+++.
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG 68 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGG 68 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCc
Confidence 44578899999999999999999999999999999876543
No 294
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.88 E-value=0.078 Score=57.14 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhc----CC--eEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 281 QEMVRILLSSLTK----AG--VSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 281 ~~~~~~~~~~l~~----~g--V~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
..+...+.+.+++ .| +++ .+++|++|+..+++.+.|+. .+| ++.+|.||+|+|.-
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T---~~G---~i~A~~VVvaAG~~ 272 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHT---NRG---EIRARFVVVSACGY 272 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEE---CCC---EEEeCEEEECcChh
Confidence 3566667777777 67 889 99999999875334455655 255 59999999999854
No 295
>PLN02661 Putative thiazole synthesis
Probab=96.87 E-value=0.0055 Score=62.30 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=36.2
Q ss_pred HHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhh-CCCeEEEEecCCcccc
Q psy14461 76 ERYLNARGDRFAVLYLDRIGDEGILLEEELKRQT-NQRRDELQERGSHLSF 125 (535)
Q Consensus 76 k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~-~~~~V~lie~~~~~~~ 125 (535)
+++++.+.. +.-.+|+|||+|++|+.+|+.+.. .+.+|+|+|+...+++
T Consensus 81 ~~~~~~l~~-~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 81 RRYMTDMIT-YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred HhHhhhhhh-cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 344444432 223689999999999999998875 4789999999876543
No 296
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.86 E-value=0.0084 Score=47.39 Aligned_cols=34 Identities=24% Similarity=0.093 Sum_probs=30.7
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
+++|||+|..|+..|......+.+|+|+++.+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 4799999999999998888889999999999865
No 297
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.85 E-value=0.0051 Score=64.02 Aligned_cols=34 Identities=9% Similarity=-0.140 Sum_probs=30.3
Q ss_pred EEEeeCCccHHHHHHHHH--hhCCCeEEEEecCCcc
Q psy14461 90 YLDRIGDEGILLEEELKR--QTNQRRDELQERGSHL 123 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~--~~~~~~V~lie~~~~~ 123 (535)
||+|||+|+||++.|... ...+.+|+|+|+.+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 579999999999999877 7789999999998765
No 298
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.85 E-value=0.0018 Score=49.59 Aligned_cols=34 Identities=21% Similarity=0.056 Sum_probs=29.7
Q ss_pred eeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461 93 RIGDEGILLEEELKRQTNQRRDELQERGSHLSFR 126 (535)
Q Consensus 93 iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~ 126 (535)
|||+|.+|+.+|..+...+.+|+|+|+.+.+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~ 34 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR 34 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence 7999999999999888889999999999987654
No 299
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.84 E-value=0.0095 Score=63.80 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
.|+|||||+.|+.+|..|++.|.+|.++++
T Consensus 5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~ 34 (460)
T PRK06292 5 DVIVIGAGPAGYVAARRAAKLGKKVALIEK 34 (460)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 699999999999999999999999999997
No 300
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.84 E-value=0.0085 Score=63.95 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=35.8
Q ss_pred HHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461 284 VRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKFDF 344 (535)
Q Consensus 284 ~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~ 344 (535)
.+.+.+...+.||++ .+ +|.++..++++.+ .|++ .+|+ ++++|++|=|+|++...
T Consensus 157 d~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~---~~g~--~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 157 DQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRL---DDGR--TIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEE---TTSE--EEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEE---CCCC--EEEEeEEEECCCccchh
Confidence 344556667789999 76 4777766545554 4666 3676 89999999999997653
No 301
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.83 E-value=0.013 Score=63.24 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
.++|||+|+.|+.+|..+++.|.+|.++++
T Consensus 4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~ 33 (484)
T TIGR01438 4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDF 33 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 699999999999999999999999999994
No 302
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.81 E-value=0.01 Score=61.79 Aligned_cols=35 Identities=11% Similarity=-0.050 Sum_probs=31.9
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
.+|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 57899999999999999998889999999998754
No 303
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.79 E-value=0.016 Score=61.72 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLG-VPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~ 272 (535)
.|+|||+|..|+-+|..+++.| .+|+|+++
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk 31 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEK 31 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEec
Confidence 4899999999999999999999 99999987
No 304
>PRK07121 hypothetical protein; Validated
Probab=96.79 E-value=0.018 Score=62.33 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=28.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
-.|+|||+|..|+-+|..+++.|.+|+++++
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae~G~~VillEK 51 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAAAGARVLVLER 51 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 4699999999999999999999999999987
No 305
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.78 E-value=0.07 Score=59.38 Aligned_cols=36 Identities=8% Similarity=-0.071 Sum_probs=32.1
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
..||+|||+|.||+.||+.....+.+|+|+||....
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~ 85 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 85 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 368999999999999999998888999999998743
No 306
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.76 E-value=0.014 Score=65.44 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
.+|+|||||.+|+-+|..|+++|.+|+|+++
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~ 291 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEA 291 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEec
Confidence 4899999999999999999999999999998
No 307
>KOG0404|consensus
Probab=96.76 E-value=0.0095 Score=55.65 Aligned_cols=99 Identities=12% Similarity=0.018 Sum_probs=71.0
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc---CcC--------------Cc-----cCcHHHHHHHHHhhhcCCeEE
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS---RRL--------------LK-----HFDQEMVRILLSSLTKAGVSI 298 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~---~~~--------------l~-----~~~~~~~~~~~~~l~~~gV~i 298 (535)
-.+|+|||+|+.|-.+|.+++|...+-.+++- ..+ +| ...+++.+.+++.-++.|.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 35899999999999999999998766666643 111 12 235788888888888899999
Q ss_pred cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461 299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346 (535)
Q Consensus 299 ~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~ 346 (535)
...+|.+++.. ..-+++.. +.+ .+.+|.||+|||....--.
T Consensus 88 ~tEtVskv~~s-skpF~l~t----d~~--~v~~~avI~atGAsAkRl~ 128 (322)
T KOG0404|consen 88 ITETVSKVDLS-SKPFKLWT----DAR--PVTADAVILATGASAKRLH 128 (322)
T ss_pred eeeehhhcccc-CCCeEEEe----cCC--ceeeeeEEEecccceeeee
Confidence 44467777654 33445544 333 6899999999997655433
No 308
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.75 E-value=0.011 Score=62.90 Aligned_cols=34 Identities=18% Similarity=-0.030 Sum_probs=31.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
++|+|||+||+|..+|+.+...+.+|+|+|+...
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 6899999999999999999889999999999753
No 309
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.75 E-value=0.02 Score=61.38 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
.|+|||+|..|+-+|..+++.|.+|+++++
T Consensus 6 DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk 35 (466)
T PRK08274 6 DVLVIGGGNAALCAALAAREAGASVLLLEA 35 (466)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 699999999999999999999999999998
No 310
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.65 E-value=0.046 Score=51.39 Aligned_cols=104 Identities=20% Similarity=0.171 Sum_probs=63.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCcc-------C-------------------------------cHH
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKH-------F-------------------------------DQE 282 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~-------~-------------------------------~~~ 282 (535)
-.|+|||+|+.|+-+|..|++.|.+|.++++ ..+-.. + ..+
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~~ 97 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSVE 97 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHHH
Confidence 5799999999999999999999999999998 433211 0 012
Q ss_pred HHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecC---CCC---CceEEEcCEEEEccCCCCCCC
Q psy14461 283 MVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHP---ESK---EPFADVFKTVVNAMEKKFDFA 345 (535)
Q Consensus 283 ~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~---~~G---~~~~~~~D~vi~a~G~~p~~~ 345 (535)
+...+....-+.|+++ ....++++--.+++++. |.+..+ ..| .+..+++..|+-|||...+.-
T Consensus 98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~ 168 (230)
T PF01946_consen 98 FTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVV 168 (230)
T ss_dssp HHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSST
T ss_pred HHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHH
Confidence 2233333344589999 99999988655334543 333210 112 234899999999999876653
No 311
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.64 E-value=0.025 Score=62.63 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=31.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 239 ~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
..+.+|+|||||..|+-+|..|++.|.+|+|+++
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEK 112 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEec
Confidence 3457899999999999999999999999999998
No 312
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.64 E-value=0.0029 Score=49.97 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=32.1
Q ss_pred hcCCcEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461 55 SYENRILIFTHAVLREENARAERYLNARGDRFAVLYLD 92 (535)
Q Consensus 55 i~~~~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~ 92 (535)
.++++|.+|++++|| +|.+++.++.+.|.+++.+++.
T Consensus 5 ~~~~~V~ly~~~~Cp-~C~~ak~~L~~~gi~y~~idi~ 41 (79)
T TIGR02190 5 RKPESVVVFTKPGCP-FCAKAKATLKEKGYDFEEIPLG 41 (79)
T ss_pred CCCCCEEEEECCCCH-hHHHHHHHHHHcCCCcEEEECC
Confidence 467899999999999 9999999999999888765543
No 313
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.63 E-value=0.029 Score=60.79 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
-.|+|||||.+|+-+|..|+++|.+|.++++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk 37 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEK 37 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEEC
Confidence 3699999999999999999999999999987
No 314
>PRK06184 hypothetical protein; Provisional
Probab=96.63 E-value=0.017 Score=62.52 Aligned_cols=35 Identities=11% Similarity=-0.034 Sum_probs=31.9
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
.+|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 57899999999999999999999999999998643
No 315
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.61 E-value=0.013 Score=63.11 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=61.1
Q ss_pred EEEEeeCCccHHHHHHHHHh---hCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQ---TNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK 165 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~---~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (535)
.+++|||+|..|+..|.... ..+.+|+|+++.+.+ ++.+ |.
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i------l~~~----------------------d~-------- 231 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI------LRGF----------------------DS-------- 231 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc------cccc----------------------CH--------
Confidence 46899999999998775322 237899999988754 1211 10
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEeE-EEEec---CC--EEEEc-eeEEEcceEEEeeCceecC
Q psy14461 166 RFCIRAKNDSMRELKALGIDIVRTA-AAFTN---PH--TIKLS-NRSVTGFNFLLAVERRCLP 221 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~gV~~~~g~-~~~~~---~~--~v~~~-~~~~~~d~lViATGs~p~~ 221 (535)
++...+...+++.||+++.+. +..+. .. .+.+. +.++.+|.|++|+|.+|..
T Consensus 232 ----~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 232 ----TLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred ----HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 111223356778899998875 22221 22 34443 3679999999999999976
No 316
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.61 E-value=0.0094 Score=47.10 Aligned_cols=61 Identities=25% Similarity=0.302 Sum_probs=44.5
Q ss_pred cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE-EEEecCC
Q psy14461 59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD-ELQERGS 121 (535)
Q Consensus 59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V-~lie~~~ 121 (535)
+|++|++.+|| +|.++++++.+.+..+..+++.+.-.+.. +...+....+..++ +|+-.+.
T Consensus 1 ~v~~y~~~~Cp-~C~~~~~~l~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~g~~~~P~v~~~g~ 62 (82)
T cd03419 1 PVVVFSKSYCP-YCKRAKSLLKELGVKPAVVELDQHEDGSE-IQDYLQELTGQRTVPNVFIGGK 62 (82)
T ss_pred CEEEEEcCCCH-HHHHHHHHHHHcCCCcEEEEEeCCCChHH-HHHHHHHHhCCCCCCeEEECCE
Confidence 47899999999 99999999999999888888887765333 66666665544343 3343333
No 317
>PRK06834 hypothetical protein; Provisional
Probab=96.59 E-value=0.021 Score=61.68 Aligned_cols=34 Identities=12% Similarity=-0.125 Sum_probs=31.4
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
.+|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5789999999999999998889999999999874
No 318
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=96.54 E-value=0.1 Score=56.11 Aligned_cols=62 Identities=15% Similarity=0.009 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhh-cCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 281 QEMVRILLSSLT-KAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 281 ~~~~~~~~~~l~-~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
..+.+.+.+.+. ..|+++ .++.|+.++..+++.+.+.+..+.+|+..++.+|.||+|.|.-.
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 345566666664 458999 99999999865345566654322345323589999999999755
No 319
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.54 E-value=0.033 Score=58.04 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=59.4
Q ss_pred hhhcC-CeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeec-C-CCceEcC
Q psy14461 290 SLTKA-GVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIK-K-KSYVVCN 365 (535)
Q Consensus 290 ~l~~~-gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~-~G~i~vd 365 (535)
.+.+. |+++ ++++|++|+..+++...|.+.+..+|+..++.+++|++..|-..- .++ .++|+.-. . .|+.+--
T Consensus 190 ~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL-~LL--qksgi~e~~gyggfPVsG 266 (488)
T PF06039_consen 190 YLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL-PLL--QKSGIPEGKGYGGFPVSG 266 (488)
T ss_pred HHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH-HHH--HHcCChhhcccCCCcccc
Confidence 34444 8999 999999999987777888876656777789999999999886532 122 55555321 1 3444334
Q ss_pred CCCCcCCC--------CEEEeCCc
Q psy14461 366 EKDQTSVG--------NIFAVGGI 381 (535)
Q Consensus 366 ~~~~T~~~--------~IyA~GD~ 381 (535)
.+++++.| .||..-.+
T Consensus 267 ~fl~~~n~~vv~~H~aKVYgka~v 290 (488)
T PF06039_consen 267 QFLRCKNPEVVAQHNAKVYGKASV 290 (488)
T ss_pred eEEecCCHHHHHHhcceeeeeCCC
Confidence 56666544 46766554
No 320
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.53 E-value=0.017 Score=60.40 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=66.7
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF 167 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (535)
..+++++|+|+.|+.+|......+.+|+++|+.+.+... +..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~---------------------------------~~~----- 177 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ---------------------------------LLD----- 177 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh---------------------------------hhh-----
Confidence 357899999999999999998899999999999865211 000
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeEE-EEecCC--E------EEEceeEEEcceEEEeeCceecC
Q psy14461 168 CIRAKNDSMRELKALGIDIVRTAA-AFTNPH--T------IKLSNRSVTGFNFLLAVERRCLP 221 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~gV~~~~g~~-~~~~~~--~------v~~~~~~~~~d~lViATGs~p~~ 221 (535)
..+...+...++..||+++.+.. ..++.+ . +......+.+|.+++++|.+|..
T Consensus 178 -~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~ 239 (415)
T COG0446 178 -PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNV 239 (415)
T ss_pred -HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccH
Confidence 11222344778888999887753 223322 1 22233789999999999999954
No 321
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.46 E-value=0.08 Score=56.76 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC
Q psy14461 281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK 340 (535)
Q Consensus 281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~ 340 (535)
..+.-.+.....++|-++ +.++|+.+..+ ++..-|+.++..+|++.++.++.|+.|+|.
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~v~gV~~~D~~tg~~~~ira~~VVNAaGp 223 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRRE-GGVWGVEVEDRETGETYEIRARAVVNAAGP 223 (532)
T ss_pred HHHHHHHHHHHHhcccchhhcceeeeeeec-CCEEEEEEEecCCCcEEEEEcCEEEECCCc
Confidence 345555556667889999 99999999886 454467777666788889999999999995
No 322
>PRK07190 hypothetical protein; Provisional
Probab=96.45 E-value=0.021 Score=61.60 Aligned_cols=34 Identities=12% Similarity=-0.037 Sum_probs=31.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
.+|+|||+||+|+.+|+.+...+.+|+|+|+.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 6899999999999999988888999999999874
No 323
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.41 E-value=0.016 Score=55.83 Aligned_cols=99 Identities=19% Similarity=0.188 Sum_probs=66.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCc----------cC----------cHHHHH----------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLK----------HF----------DQEMVR---------------- 285 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~----------~~----------~~~~~~---------------- 285 (535)
+|+|||+|..|+-+|..|+..|.+||++++ .-+.. .+ ++-+.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 599999999999999999999999999987 32210 01 111111
Q ss_pred --------------------------HHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEcc
Q psy14461 286 --------------------------ILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM 338 (535)
Q Consensus 286 --------------------------~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~ 338 (535)
.+.+.| ....++ ++++|+++... ++..+++.+ +|. ....+|.|++++
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-AtdL~V~~~~rVt~v~~~-~~~W~l~~~---~g~-~~~~~d~vvla~ 156 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-ATDLTVVLETRVTEVART-DNDWTLHTD---DGT-RHTQFDDVVLAI 156 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHH-hccchhhhhhhhhhheec-CCeeEEEec---CCC-cccccceEEEec
Confidence 111222 234678 88999998876 567788874 343 268899999998
Q ss_pred CCCCCCCCC
Q psy14461 339 EKKFDFAAL 347 (535)
Q Consensus 339 G~~p~~~~l 347 (535)
.......+|
T Consensus 157 PAPQ~~~LL 165 (331)
T COG3380 157 PAPQTATLL 165 (331)
T ss_pred CCCcchhhc
Confidence 644333333
No 324
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0086 Score=59.49 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=76.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEE-Ec--CcCCc------------cCcHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YS--RRLLK------------HFDQEMVRILLSSLTKAGVSI-QCCVI 303 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv-~~--~~~l~------------~~~~~~~~~~~~~l~~~gV~i-~~~~v 303 (535)
.+-.|+|||||+.|.-+|.+.+|.|.+.-++ +| .+.+. ...+.+...+++..++..|++ ...+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra 289 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA 289 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence 3568999999999999999999998765444 22 22221 346888999999999999999 88888
Q ss_pred EEEEEe--CCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 304 EKVISS--FDGMKGVRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 304 ~~i~~~--~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
+++++. +++...|+++ +|. .+++..+|++||.+
T Consensus 290 ~~l~~a~~~~~l~ev~l~---nGa--vLkaktvIlstGAr 324 (520)
T COG3634 290 SKLEPAAVEGGLIEVELA---NGA--VLKARTVILATGAR 324 (520)
T ss_pred hcceecCCCCccEEEEec---CCc--eeccceEEEecCcc
Confidence 888763 2345678885 788 89999999999976
No 325
>PRK08244 hypothetical protein; Provisional
Probab=96.38 E-value=0.017 Score=62.56 Aligned_cols=34 Identities=15% Similarity=-0.044 Sum_probs=31.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
++|+|||+||+|+.+|+.+...+.+|+|+|+.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4789999999999999999889999999999864
No 326
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.38 E-value=0.048 Score=59.98 Aligned_cols=50 Identities=14% Similarity=0.077 Sum_probs=34.6
Q ss_pred hhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCC
Q psy14461 290 SLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEK 340 (535)
Q Consensus 290 ~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~ 340 (535)
.+.+.||++ .++.++++..+ ++++. |...+..+|+...+.++.||+|||-
T Consensus 145 ~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 145 RTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 344567888 88888888765 46553 4443323555567899999999983
No 327
>PRK07846 mycothione reductase; Reviewed
Probab=96.37 E-value=0.023 Score=60.74 Aligned_cols=92 Identities=14% Similarity=-0.035 Sum_probs=60.0
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC 168 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (535)
.+++|||+|+.|+..|......+.+|+|+++.+.+ ++.. +.+ +.+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l------l~~~----------------------d~~-~~~~----- 212 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL------LRHL----------------------DDD-ISER----- 212 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc------cccc----------------------CHH-HHHH-----
Confidence 46899999999999887777788999999998754 1111 111 1111
Q ss_pred HHHHHHHHHHHHhcCcEEEEeE-EEEec--CCE--EEEc-eeEEEcceEEEeeCceecC
Q psy14461 169 IRAKNDSMRELKALGIDIVRTA-AAFTN--PHT--IKLS-NRSVTGFNFLLAVERRCLP 221 (535)
Q Consensus 169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~~--~~~--v~~~-~~~~~~d~lViATGs~p~~ 221 (535)
+...+ +.+|+++.+. +...+ +.. +.+. +.++.+|.|++|+|.+|..
T Consensus 213 ------l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 213 ------FTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred ------HHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 11222 3578887664 32222 223 3333 3679999999999999977
No 328
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=96.37 E-value=0.2 Score=52.67 Aligned_cols=53 Identities=23% Similarity=0.161 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCC
Q psy14461 282 EMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEK 340 (535)
Q Consensus 282 ~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~ 340 (535)
.+...+.+.+.+.|+++ .++.|++++..+++.+ .|+. .+| ++.+|.|++|+|-
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t---~~g---~i~a~~vVvaagg 238 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVET---TRG---FIGAKKVGVAVAG 238 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEe---CCc---eEECCEEEECCCh
Confidence 44555667778899999 9999999975423443 3444 355 5899998888764
No 329
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.37 E-value=0.0084 Score=47.62 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=28.4
Q ss_pred cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461 59 RILIFTHAVLREENARAERYLNARGDRFAVLYLD 92 (535)
Q Consensus 59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~ 92 (535)
+|.+|++++|| +|.+++.++.+.|..++.+++.
T Consensus 2 ~v~lYt~~~Cp-~C~~ak~~L~~~gI~~~~idi~ 34 (81)
T PRK10329 2 RITIYTRNDCV-QCHATKRAMESRGFDFEMINVD 34 (81)
T ss_pred EEEEEeCCCCH-hHHHHHHHHHHCCCceEEEECC
Confidence 57899999999 9999999999999887655544
No 330
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.35 E-value=0.043 Score=60.79 Aligned_cols=30 Identities=33% Similarity=0.315 Sum_probs=27.9
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEEc-C
Q psy14461 244 TLVLGGSLMAVEIAATLNFLGVPVTLVYS-R 273 (535)
Q Consensus 244 vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~ 273 (535)
|+|||+|..|+-+|..+++.|.+|.|+++ .
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 68999999999999999999999999987 5
No 331
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.35 E-value=0.027 Score=58.45 Aligned_cols=35 Identities=17% Similarity=-0.027 Sum_probs=29.6
Q ss_pred EEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCccc
Q psy14461 90 YLDRIGDEGILLEEELKRQTN--QRRDELQERGSHLS 124 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~~~ 124 (535)
+|+|||+|++|+..|...... +.+|+|+|+.+.++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~ 37 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIG 37 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 579999999999999877654 89999999987543
No 332
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.34 E-value=0.0061 Score=46.66 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=27.9
Q ss_pred EECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461 246 VLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL 276 (535)
Q Consensus 246 ViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l 276 (535)
|||+|.+|+-+|..|++.|.+|+|+++ +.+-
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 899999999999999999999999999 7654
No 333
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.33 E-value=0.047 Score=60.12 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
.|+|||+|..|+-+|..+++.|.+|+|+++
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK 30 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISK 30 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence 489999999999999999999999999987
No 334
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=0.011 Score=62.42 Aligned_cols=94 Identities=19% Similarity=0.166 Sum_probs=62.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc--CcCC--c---c---------------C--------------------
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS--RRLL--K---H---------------F-------------------- 279 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~--~~~l--~---~---------------~-------------------- 279 (535)
-.|+|||||..|+|+|.+.+|.|+++.+++. +.+. + . +
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 3699999999999999999999999998865 3221 0 0 0
Q ss_pred -------------cH-HHHHHHHHhhh-cCCeEEcceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCC
Q psy14461 280 -------------DQ-EMVRILLSSLT-KAGVSIQCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEK 340 (535)
Q Consensus 280 -------------~~-~~~~~~~~~l~-~~gV~i~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~ 340 (535)
|. .+...+++.++ ..++.+....|.++.-.++.++ -|.+ .+|. .+.++.|+++||.
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t---~~G~--~~~a~aVVlTTGT 156 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVT---ADGP--EFHAKAVVLTTGT 156 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEe---CCCC--eeecCEEEEeecc
Confidence 11 12233334443 3577775556666654422223 3554 4788 8999999999994
No 335
>PRK08275 putative oxidoreductase; Provisional
Probab=96.29 E-value=0.056 Score=59.37 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=39.6
Q ss_pred HHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 284 VRILLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 284 ~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
.+.+.+.+++.||++ .++.++++..++++++. +...+..+|+...+.++.||+|+|-..
T Consensus 140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 344455566678999 99999998764234432 333222366655789999999999754
No 336
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.25 E-value=0.03 Score=60.31 Aligned_cols=76 Identities=12% Similarity=-0.079 Sum_probs=54.2
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC 168 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (535)
.++.|+|+|++|+.+|..+...+.+|+++|+.+.. ...
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~------------------------------------~~~------ 54 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDE------------------------------------RHR------ 54 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh------------------------------------hhH------
Confidence 46799999999999988777888999999976411 000
Q ss_pred HHHHHHHHHHHHhcCcEEEEeEEEEecCCEEEEceeEEEcceEEEeeCceecC
Q psy14461 169 IRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLP 221 (535)
Q Consensus 169 ~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~~~~~~~~~d~lViATGs~p~~ 221 (535)
.....+++.||+++.+.... ....+|.||+++|..|..
T Consensus 55 -----~~~~~l~~~gv~~~~~~~~~----------~~~~~D~Vv~s~Gi~~~~ 92 (480)
T PRK01438 55 -----ALAAILEALGATVRLGPGPT----------LPEDTDLVVTSPGWRPDA 92 (480)
T ss_pred -----HHHHHHHHcCCEEEECCCcc----------ccCCCCEEEECCCcCCCC
Confidence 01234666799987764211 135699999999998876
No 337
>PRK10638 glutaredoxin 3; Provisional
Probab=96.21 E-value=0.017 Score=45.98 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=37.2
Q ss_pred cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE
Q psy14461 59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD 114 (535)
Q Consensus 59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V 114 (535)
+|.+|+++.|| +|.+++.++.+.+.+++.+++. ..+. ....+.+..+..+|
T Consensus 3 ~v~ly~~~~Cp-~C~~a~~~L~~~gi~y~~~dv~---~~~~-~~~~l~~~~g~~~v 53 (83)
T PRK10638 3 NVEIYTKATCP-FCHRAKALLNSKGVSFQEIPID---GDAA-KREEMIKRSGRTTV 53 (83)
T ss_pred cEEEEECCCCh-hHHHHHHHHHHcCCCcEEEECC---CCHH-HHHHHHHHhCCCCc
Confidence 58899999999 9999999999999887665553 2233 44556555555443
No 338
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.17 E-value=0.0071 Score=46.69 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=28.8
Q ss_pred cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461 59 RILIFTHAVLREENARAERYLNARGDRFAVLYLD 92 (535)
Q Consensus 59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~ 92 (535)
+|.+|+++.|| +|.++++++.+.+.++..+++.
T Consensus 2 ~v~lys~~~Cp-~C~~ak~~L~~~~i~~~~~~v~ 34 (72)
T cd03029 2 SVSLFTKPGCP-FCARAKAALQENGISYEEIPLG 34 (72)
T ss_pred eEEEEECCCCH-HHHHHHHHHHHcCCCcEEEECC
Confidence 58899999999 9999999999999887666544
No 339
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.17 E-value=0.021 Score=44.24 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=36.6
Q ss_pred cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCe
Q psy14461 59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRR 113 (535)
Q Consensus 59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~ 113 (535)
+|.+|+++.|| +|.+++.++.+.+.+++.+++. .. +. ....+....+..+
T Consensus 2 ~v~ly~~~~C~-~C~ka~~~L~~~gi~~~~~di~--~~-~~-~~~el~~~~g~~~ 51 (73)
T cd03027 2 RVTIYSRLGCE-DCTAVRLFLREKGLPYVEINID--IF-PE-RKAELEERTGSSV 51 (73)
T ss_pred EEEEEecCCCh-hHHHHHHHHHHCCCceEEEECC--CC-HH-HHHHHHHHhCCCC
Confidence 68899999999 9999999999999887655543 22 33 4556665555433
No 340
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.16 E-value=0.067 Score=59.69 Aligned_cols=50 Identities=14% Similarity=0.072 Sum_probs=35.3
Q ss_pred hhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCC
Q psy14461 290 SLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEK 340 (535)
Q Consensus 290 ~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~ 340 (535)
.+++.||++ .++.++++..+ ++++. |...+..+|+...+.++.||+|||-
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 345678999 99999998765 45543 4443323566567899999999985
No 341
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.10 E-value=0.074 Score=59.01 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=27.7
Q ss_pred CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~ 272 (535)
-.|+|||+|..|+-+|..+++. |.+|.++++
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK 44 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEK 44 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 3699999999999999999888 899999987
No 342
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.07 E-value=0.0069 Score=56.84 Aligned_cols=40 Identities=10% Similarity=-0.101 Sum_probs=31.7
Q ss_pred eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461 87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR 126 (535)
Q Consensus 87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~ 126 (535)
..+|++|+|+||+|+.+|..+...+.+|++||++..+++.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg 55 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGG 55 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 3578999999999999999998899999999999876543
No 343
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.04 E-value=0.25 Score=54.05 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=30.0
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
.+|+|||+|.||+.+|+..... .+|+|+||....
T Consensus 9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~ 42 (536)
T PRK09077 9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS 42 (536)
T ss_pred CCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence 5899999999999999988765 799999998754
No 344
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.02 E-value=0.048 Score=60.71 Aligned_cols=34 Identities=21% Similarity=-0.015 Sum_probs=28.9
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
+++|||+|..|+..|......+.+|+|+|+.+.+
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 5799999999998887666678899999998754
No 345
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.01 E-value=0.086 Score=57.75 Aligned_cols=55 Identities=20% Similarity=0.128 Sum_probs=37.0
Q ss_pred HHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 287 LLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
+.+.+++.||++ .++.++++..++++++ -+...+..+|+...+.++.||+|||--
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 444455678999 9999999876533323 233332236765678999999999853
No 346
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.99 E-value=0.086 Score=56.91 Aligned_cols=54 Identities=13% Similarity=-0.013 Sum_probs=36.5
Q ss_pred HHHhhhc-CCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCCC
Q psy14461 287 LLSSLTK-AGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKFD 343 (535)
Q Consensus 287 ~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p~ 343 (535)
+.+.+++ .||++ .++.++++..+ ++.+. +...+ .++...+.++.||+|+|-...
T Consensus 134 L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~--~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 134 LVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWN--RETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEE--CCcEEEEEcCEEEECCCcccC
Confidence 3344444 58999 99999998765 45443 54442 243347899999999997544
No 347
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.98 E-value=0.089 Score=58.26 Aligned_cols=54 Identities=13% Similarity=-0.068 Sum_probs=36.3
Q ss_pred HhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 289 SSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 289 ~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
+.+++.||++ .++.++++..++++++. |...+..+|+...+.++.||+|||--.
T Consensus 157 ~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 157 QQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 3345578899 89999988754234443 443222467666889999999998543
No 348
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.95 E-value=0.011 Score=60.22 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=30.9
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS 124 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~ 124 (535)
++|+|||+|++|+.+|+.+...+.+|+|||+.+...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 689999999999999999999999999999987543
No 349
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.94 E-value=0.021 Score=65.05 Aligned_cols=34 Identities=18% Similarity=0.023 Sum_probs=29.6
Q ss_pred EEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTN--QRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~ 122 (535)
++|+|||+|++|+.+|+.+... +.+|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 3689999999999999877665 799999999875
No 350
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.94 E-value=0.051 Score=58.05 Aligned_cols=92 Identities=16% Similarity=-0.006 Sum_probs=59.2
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHHH
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFC 168 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (535)
.+++|||+|+.|+..|......+.+|+|+++.+.+ ++.. +. ++...
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l------l~~~----------------------d~-~~~~~----- 215 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL------LRHL----------------------DE-DISDR----- 215 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc------cccc----------------------CH-HHHHH-----
Confidence 46799999999999887777778899999987743 1111 11 11111
Q ss_pred HHHHHHHHHHHHhcCcEEEEeE-EEEe--cCCEEE--Ec-eeEEEcceEEEeeCceecC
Q psy14461 169 IRAKNDSMRELKALGIDIVRTA-AAFT--NPHTIK--LS-NRSVTGFNFLLAVERRCLP 221 (535)
Q Consensus 169 ~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~~~v~--~~-~~~~~~d~lViATGs~p~~ 221 (535)
+...+ ..+|+++.+. +..+ ++..+. +. +.++.+|.|++|+|.+|..
T Consensus 216 ------l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 216 ------FTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred ------HHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 11222 3578888663 2222 223333 32 3579999999999999977
No 351
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.92 E-value=0.029 Score=43.44 Aligned_cols=47 Identities=23% Similarity=0.378 Sum_probs=34.0
Q ss_pred cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhC
Q psy14461 59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTN 110 (535)
Q Consensus 59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~ 110 (535)
+|.+|+++.|| +|.+++.++.+.+.++..+++.- . +. ...++....+
T Consensus 1 ~i~ly~~~~Cp-~C~~ak~~L~~~~i~~~~i~i~~--~-~~-~~~~~~~~~~ 47 (75)
T cd03418 1 KVEIYTKPNCP-YCVRAKALLDKKGVDYEEIDVDG--D-PA-LREEMINRSG 47 (75)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCcEEEEECCC--C-HH-HHHHHHHHhC
Confidence 47899999999 99999999999998876655542 2 33 4445544433
No 352
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=95.90 E-value=0.098 Score=58.13 Aligned_cols=52 Identities=15% Similarity=-0.083 Sum_probs=34.6
Q ss_pred hhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 290 SLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 290 ~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
..++.||++ .++.++++..++++++. |...+..+|+...+.++.||+|||--
T Consensus 175 ~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 175 QSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 344567888 88888887652245443 43322246776788999999999743
No 353
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.88 E-value=0.032 Score=44.82 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=27.6
Q ss_pred EEEEeCCCchhhHHHHHHHHHhcCCc---ceEEEEEeeCC
Q psy14461 60 ILIFTHAVLREENARAERYLNARGDR---FAVLYLDRIGD 96 (535)
Q Consensus 60 v~v~~k~~cp~~~~~~k~~~~~~~~~---~~~~~v~iiG~ 96 (535)
|.+|++++|| +|.++++++.+.+.+ +.+..++|-..
T Consensus 2 V~vys~~~Cp-~C~~ak~~L~~~~~~~~~i~~~~idi~~~ 40 (86)
T TIGR02183 2 VVIFGRPGCP-YCVRAKQLAEKLAIERADFEFRYIDIHAE 40 (86)
T ss_pred EEEEeCCCCc-cHHHHHHHHHHhCcccCCCcEEEEECCCC
Confidence 6789999999 999999999987532 34455565554
No 354
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.87 E-value=0.085 Score=56.01 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=35.6
Q ss_pred HHHHhhhc-CCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 286 ILLSSLTK-AGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 286 ~~~~~l~~-~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
.+.+.+++ .||++ .++.++++..+ ++++ -|.... +|+...+.++.||+|+|--.
T Consensus 133 ~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 133 ILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLK--DNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEE--CCcEEEEEcCeEEEccCccc
Confidence 34444443 58999 99999998754 3443 233222 45544689999999999643
No 355
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.84 E-value=0.023 Score=44.98 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=37.3
Q ss_pred EEEEeCCCchhhHHHHHHHHHhcCCc--ceEEEEEeeCCccHHHHHHHHHhhCC
Q psy14461 60 ILIFTHAVLREENARAERYLNARGDR--FAVLYLDRIGDEGILLEEELKRQTNQ 111 (535)
Q Consensus 60 v~v~~k~~cp~~~~~~k~~~~~~~~~--~~~~~v~iiG~G~aG~~~al~~~~~~ 111 (535)
|++|++.+|| +|.++++++.+.+.+ +..+++.....+.. +..++....+.
T Consensus 1 V~~f~~~~Cp-~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~-~~~~l~~~~g~ 52 (84)
T TIGR02180 1 VVVFSKSYCP-YCKKAKEILAKLNVKPAYEVVELDQLSNGSE-IQDYLEEITGQ 52 (84)
T ss_pred CEEEECCCCh-hHHHHHHHHHHcCCCCCCEEEEeeCCCChHH-HHHHHHHHhCC
Confidence 5689999999 999999999998876 66777776655333 66666555443
No 356
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.83 E-value=0.12 Score=57.61 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=26.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
.|+|||+|..|+-+|..+++.|.+|+++++
T Consensus 10 DVvVIG~G~AGl~AAl~Aae~G~~V~lieK 39 (626)
T PRK07803 10 DVVVIGAGGAGLRAAIEARERGLRVAVVCK 39 (626)
T ss_pred cEEEECcCHHHHHHHHHHHHCCCCEEEEec
Confidence 688999999998888888888888888876
No 357
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=95.83 E-value=0.13 Score=57.22 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=27.1
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
-.|+|||||.+|+-+|..|+++|.+|+++++
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~ 102 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLRVGLVER 102 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence 4689999999999999999998988888876
No 358
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.83 E-value=0.012 Score=61.41 Aligned_cols=34 Identities=32% Similarity=0.260 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL 275 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~ 275 (535)
++|+|||||.+|+++|..|++.|.+|+|+++ +..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 5799999999999999999999999999997 544
No 359
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.79 E-value=0.098 Score=56.12 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=28.9
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
..|+|||+|..|+-+|..+++.|.+|+|+++
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek 32 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGP 32 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeC
Confidence 4699999999999999999999999999987
No 360
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.77 E-value=0.044 Score=59.88 Aligned_cols=99 Identities=9% Similarity=0.035 Sum_probs=72.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhC---CCcEEEEEc-CcCC-------ccC-----cHHHHHHHHHhhhcCCeEE-cceEE
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFL---GVPVTLVYS-RRLL-------KHF-----DQEMVRILLSSLTKAGVSI-QCCVI 303 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~---g~~Vtlv~~-~~~l-------~~~-----~~~~~~~~~~~l~~~gV~i-~~~~v 303 (535)
..+++|||.|..|..+...+... -..||++.. +++- +.+ -+++.-.-.+..+++||++ ++..+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 36799999999999988888774 358888855 3321 111 1334434456678899999 99999
Q ss_pred EEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 304 EKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 304 ~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
..|+.. ...|+. +.|. ++.+|-+++|||..|.....
T Consensus 83 ~~idr~---~k~V~t---~~g~--~~~YDkLilATGS~pfi~Pi 118 (793)
T COG1251 83 IQIDRA---NKVVTT---DAGR--TVSYDKLIIATGSYPFILPI 118 (793)
T ss_pred EEeccC---cceEEc---cCCc--EeecceeEEecCccccccCC
Confidence 999864 234554 3787 89999999999999987654
No 361
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.76 E-value=0.026 Score=42.80 Aligned_cols=58 Identities=28% Similarity=0.419 Sum_probs=40.1
Q ss_pred cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCCCeE-EEEecCC
Q psy14461 59 RILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRD-ELQERGS 121 (535)
Q Consensus 59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~~~V-~lie~~~ 121 (535)
+|.+|++..|| +|.+++.++.+.+.++. .+++... +. ....+....+..++ +++..+.
T Consensus 1 ~v~ly~~~~Cp-~C~~~~~~L~~~~i~~~--~~di~~~-~~-~~~~l~~~~~~~~~P~~~~~~~ 59 (72)
T cd02066 1 KVVVFSKSTCP-YCKRAKRLLESLGIEFE--EIDILED-GE-LREELKELSGWPTVPQIFINGE 59 (72)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHcCCcEE--EEECCCC-HH-HHHHHHHHhCCCCcCEEEECCE
Confidence 57899999999 99999999999986654 4444433 33 55666666665555 4554443
No 362
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.75 E-value=0.11 Score=57.39 Aligned_cols=55 Identities=22% Similarity=0.152 Sum_probs=36.3
Q ss_pred HHHhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 287 LLSSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 287 ~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
+.+.+++.||++ .++.++++..+ ++++. +...+..+|+...+.++.||+|+|--.
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 334455568999 99999988654 45432 322221356555789999999999754
No 363
>PTZ00367 squalene epoxidase; Provisional
Probab=95.71 E-value=0.085 Score=57.81 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
-+|+|||||..|+-+|..|++.|.+|+++++
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr 64 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcc
Confidence 4799999999999999999999999999998
No 364
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.69 E-value=0.013 Score=43.33 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=33.9
Q ss_pred EEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhh
Q psy14461 60 ILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQT 109 (535)
Q Consensus 60 v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~ 109 (535)
|++|++..|| +|.++++++.+.+.+++.+++.... . ...++....
T Consensus 1 V~vy~~~~C~-~C~~~~~~L~~~~i~y~~~dv~~~~---~-~~~~l~~~~ 45 (60)
T PF00462_consen 1 VVVYTKPGCP-YCKKAKEFLDEKGIPYEEVDVDEDE---E-AREELKELS 45 (60)
T ss_dssp EEEEESTTSH-HHHHHHHHHHHTTBEEEEEEGGGSH---H-HHHHHHHHH
T ss_pred cEEEEcCCCc-CHHHHHHHHHHcCCeeeEcccccch---h-HHHHHHHHc
Confidence 6789999999 9999999999999887666655432 2 555565543
No 365
>PRK07804 L-aspartate oxidase; Provisional
Probab=95.66 E-value=0.14 Score=56.03 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=27.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
-.|+|||+|..|+-+|..+++.|.+|+|+++
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK 47 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTK 47 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEc
Confidence 4699999999999999999988999999987
No 366
>KOG1298|consensus
Probab=95.65 E-value=0.045 Score=55.32 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
-.|+|||+|..|.-+|..|.+.|.+|++++|
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIER 76 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKDGRRVHVIER 76 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhCCcEEEEEec
Confidence 4599999999999999999999999999998
No 367
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.14 Score=53.68 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=27.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCC---CcEEEEEc-CcC
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLG---VPVTLVYS-RRL 275 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g---~~Vtlv~~-~~~ 275 (535)
.+|+|||||++|+.+|..|.+.- ..|+|+++ +++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 47999999999999999998762 23999977 543
No 368
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.57 E-value=0.016 Score=55.90 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=32.8
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR 126 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~ 126 (535)
.|+|||+|.+|++||..+...+.+||||||+..++++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGR 39 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGR 39 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccc
Confidence 4799999999999999988899999999999866544
No 369
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.55 E-value=0.19 Score=55.69 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=27.4
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
-.|+|||+|..|+-+|..+++.|.+|+|+++
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK 43 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSK 43 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence 4699999999999999998888999999876
No 370
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.52 E-value=0.16 Score=56.08 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=27.1
Q ss_pred cEEEECCChHHHHHHHHHHhCC---CcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLG---VPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g---~~Vtlv~~ 272 (535)
.|+|||+|..|+-+|..+++.| .+|+|+++
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK 39 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSK 39 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEc
Confidence 5999999999999999999988 79999986
No 371
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.52 E-value=0.032 Score=63.62 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCcEEEEEc-Cc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RR 274 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~ 274 (535)
+|+|||||+.|+-+|..|++. |.+|+|+++ +.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 899999998 54
No 372
>KOG0405|consensus
Probab=95.52 E-value=0.16 Score=50.84 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=43.9
Q ss_pred HHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCCCccccCeeecCCCceEcCC
Q psy14461 288 LSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE 366 (535)
Q Consensus 288 ~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~ 366 (535)
++.|.+.+|++ .+.. ++.. ++.+.|+.. ||+...+.+..+++|+|-+|..+.+ ....+.+|.+|+....+
T Consensus 117 ~~~L~k~~V~~i~G~a--~f~~--~~~v~V~~~---d~~~~~Ytak~iLIAtGg~p~~PnI--pG~E~gidSDgff~Lee 187 (478)
T KOG0405|consen 117 KRNLAKAAVKLIEGRA--RFVS--PGEVEVEVN---DGTKIVYTAKHILIATGGRPIIPNI--PGAELGIDSDGFFDLEE 187 (478)
T ss_pred HhhccccceeEEeeeE--EEcC--CCceEEEec---CCeeEEEecceEEEEeCCccCCCCC--Cchhhccccccccchhh
Confidence 33445556666 3321 1111 455677763 7766668999999999999988755 44445556667665543
No 373
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.50 E-value=0.21 Score=55.25 Aligned_cols=31 Identities=32% Similarity=0.430 Sum_probs=29.0
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
..|+|||+|..|+-+|..+++.|.+|+|+++
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK 34 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSL 34 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEc
Confidence 4799999999999999999999999999985
No 374
>KOG2614|consensus
Probab=95.46 E-value=0.099 Score=53.60 Aligned_cols=31 Identities=26% Similarity=0.487 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
.+|+|||||..|+-.|..|.++|.+|.+++.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~ 33 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLES 33 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEee
Confidence 5799999999999999999999999999987
No 375
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=95.44 E-value=0.18 Score=56.36 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=28.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
-.|+|||+|..|+-+|..+++.|.+|.++++
T Consensus 6 ~DVlVIG~G~AGl~AAi~Aae~G~~VivleK 36 (657)
T PRK08626 6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLSL 36 (657)
T ss_pred ccEEEECccHHHHHHHHHHHHcCCCEEEEeC
Confidence 3699999999999999999999999999986
No 376
>PLN02815 L-aspartate oxidase
Probab=95.42 E-value=0.15 Score=56.20 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=31.3
Q ss_pred CCeEE-cceEEEEEEEeCCCc---E-EEEEecCCCCCceEEEcCEEEEccC
Q psy14461 294 AGVSI-QCCVIEKVISSFDGM---K-GVRGFHPESKEPFADVFKTVVNAME 339 (535)
Q Consensus 294 ~gV~i-~~~~v~~i~~~~~~~---~-~v~~~~~~~G~~~~~~~D~vi~a~G 339 (535)
.||++ .++.++++..++++. + -+...+..+|+...+.++.||+|||
T Consensus 169 ~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATG 219 (594)
T PLN02815 169 PNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASG 219 (594)
T ss_pred CCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCC
Confidence 38888 888888876542332 2 2443322467666789999999998
No 377
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.39 E-value=0.22 Score=54.99 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=34.2
Q ss_pred hcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcC-EEEEccCCC
Q psy14461 292 TKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFK-TVVNAMEKK 341 (535)
Q Consensus 292 ~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D-~vi~a~G~~ 341 (535)
++.|+++ +++.++++..++++++. |..+. +|+...+.+. .||+|+|--
T Consensus 224 ~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~--~~~~~~i~a~~aVilAtGGf 274 (584)
T PRK12835 224 KDAGVPLWLDSPMTELITDPDGAVVGAVVER--EGRTLRIGARRGVILATGGF 274 (584)
T ss_pred HhCCceEEeCCEEEEEEECCCCcEEEEEEEe--CCcEEEEEeceeEEEecCcc
Confidence 4567899 99999999875345553 55542 6666678897 699999743
No 378
>KOG2311|consensus
Probab=95.32 E-value=0.088 Score=54.69 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=28.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
-.|+|||||..|+|+|.+.+|.|.+.++++.
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeec
Confidence 3799999999999999999999999998865
No 379
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.29 E-value=0.055 Score=41.73 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=36.6
Q ss_pred EEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhh-CCCeEEEEec
Q psy14461 60 ILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQT-NQRRDELQER 119 (535)
Q Consensus 60 v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~-~~~~V~lie~ 119 (535)
|.+|++..|| +|.++++++.+.+..++.+++. ..+. ....+.... ....+++++.
T Consensus 1 v~ly~~~~Cp-~C~~ak~~L~~~~i~~~~~di~---~~~~-~~~~~~~~g~~~vP~v~~~g 56 (72)
T TIGR02194 1 ITVYSKNNCV-QCKMTKKALEEHGIAFEEINID---EQPE-AIDYVKAQGFRQVPVIVADG 56 (72)
T ss_pred CEEEeCCCCH-HHHHHHHHHHHCCCceEEEECC---CCHH-HHHHHHHcCCcccCEEEECC
Confidence 4689999999 9999999999999887666554 2233 344444332 2344566643
No 380
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.23 E-value=0.1 Score=53.45 Aligned_cols=104 Identities=13% Similarity=0.051 Sum_probs=60.5
Q ss_pred cEEEECCChHHHHHHHHHHhCC-CcEEEEEc-CcCC--ccC---------------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLG-VPVTLVYS-RRLL--KHF--------------------------------------- 279 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~-~~~l--~~~--------------------------------------- 279 (535)
.++.||.|+..+-+|..|...+ .++..+++ +.+. |.+
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 4899999999999999998886 78999987 5431 110
Q ss_pred ----------cHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCC---cEEEEEecCCCCCceEEEcCEEEEccCCCCCCC
Q psy14461 280 ----------DQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDG---MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA 345 (535)
Q Consensus 280 ----------~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~---~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~ 345 (535)
-.++.++++-..++.+-.+ .+.+|++|+...++ ...|+..+ .+|+..++.++.|++++|..|..+
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEESEEEE----EE---
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeCeEEECcCCCCCCC
Confidence 0223333333333333336 78889999876332 35677654 467667999999999999998875
Q ss_pred CC
Q psy14461 346 AL 347 (535)
Q Consensus 346 ~l 347 (535)
..
T Consensus 163 ~~ 164 (341)
T PF13434_consen 163 EW 164 (341)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 381
>PRK06753 hypothetical protein; Provisional
Probab=95.07 E-value=0.024 Score=58.72 Aligned_cols=34 Identities=15% Similarity=0.020 Sum_probs=31.3
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
+|+|||+|++|+++|+.+...+.+|+|+|+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 6899999999999999998899999999998754
No 382
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.04 E-value=0.041 Score=43.99 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=27.1
Q ss_pred cEEEEeCCCchhhHHHHHHHHHh-----cCCcceEEEEEeeCCc
Q psy14461 59 RILIFTHAVLREENARAERYLNA-----RGDRFAVLYLDRIGDE 97 (535)
Q Consensus 59 ~v~v~~k~~cp~~~~~~k~~~~~-----~~~~~~~~~v~iiG~G 97 (535)
+|.+|++++|| +|.++++++.+ .+..+ ..++|.-.+
T Consensus 2 ~v~iy~~~~C~-~C~~a~~~L~~l~~~~~~i~~--~~idi~~~~ 42 (85)
T PRK11200 2 FVVIFGRPGCP-YCVRAKELAEKLSEERDDFDY--RYVDIHAEG 42 (85)
T ss_pred EEEEEeCCCCh-hHHHHHHHHHhhcccccCCcE--EEEECCCCh
Confidence 47899999999 99999999998 44444 445555443
No 383
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.00 E-value=0.022 Score=59.96 Aligned_cols=36 Identities=14% Similarity=-0.018 Sum_probs=32.4
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
.++|+|||+|++|+++|+.+...+.+|+|+|+.+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 367899999999999999999999999999998754
No 384
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.00 E-value=0.025 Score=60.96 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCC
Q psy14461 281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK 340 (535)
Q Consensus 281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~ 340 (535)
..+.+.+.+.+++.|++| ++++|++|..+++..+.++. .+|+ .+++|.|+.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~---~~g~--~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRT---SDGE--NIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEec---cccc--eeccceeEecCch
Confidence 457788889999999999 99999999886322345554 3554 7999999988766
No 385
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=94.97 E-value=0.025 Score=60.25 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=32.8
Q ss_pred EEEeeCCccHHHHHHHHHhhCC--CeEEEEecCCcccccc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQ--RRDELQERGSHLSFRK 127 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~--~~V~lie~~~~~~~~~ 127 (535)
+|+|||+|.+|+++|..+...+ .+|+|+|+.+.+++..
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI 41 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence 5799999999999998887755 8999999999886653
No 386
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=94.92 E-value=0.36 Score=53.31 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=31.1
Q ss_pred CCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCC
Q psy14461 294 AGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEK 340 (535)
Q Consensus 294 ~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~ 340 (535)
.+|++ .++.++++..+ ++++. +...+..+|+...+.++.||+|+|-
T Consensus 146 ~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 146 PQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred CCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 36888 88888887765 45443 3222223676567899999999984
No 387
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=94.90 E-value=0.37 Score=53.20 Aligned_cols=46 Identities=11% Similarity=0.028 Sum_probs=31.4
Q ss_pred CCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEcCEEEEccCC
Q psy14461 294 AGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVFKTVVNAMEK 340 (535)
Q Consensus 294 ~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~ 340 (535)
.+|++ .++.++++..+ ++.+. +...+..+|+...+.++.||+|+|-
T Consensus 147 ~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 147 PQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred CCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 37888 88888887765 45443 3222123666568899999999984
No 388
>PRK07045 putative monooxygenase; Reviewed
Probab=94.87 E-value=0.033 Score=58.11 Aligned_cols=36 Identities=8% Similarity=-0.152 Sum_probs=32.7
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
.++|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 468999999999999999998899999999998854
No 389
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.84 E-value=0.073 Score=56.81 Aligned_cols=79 Identities=22% Similarity=0.228 Sum_probs=54.6
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCcHHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEE
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRG 318 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~ 318 (535)
.++++|+|+|.+|+.+|..|++.|++|+++++ +. +.+. ...+.+.+.|+++ .+....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~------~~~~-~~~~~l~~~~~~~~~~~~~~-------------- 63 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE------DQLK-EALEELGELGIELVLGEYPE-------------- 63 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------HHHH-HHHHHHHhcCCEEEeCCcch--------------
Confidence 58899999999999999999999999999987 31 1222 2223345556555 322211
Q ss_pred ecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 319 FHPESKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 319 ~~~~~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
.. .-.+|.|+.++|..|+.+.+
T Consensus 64 -----~~--~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 64 -----EF--LEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred -----hH--hhcCCEEEECCCCCCCCHHH
Confidence 00 12479999999998887654
No 390
>KOG1335|consensus
Probab=94.77 E-value=0.17 Score=51.24 Aligned_cols=94 Identities=18% Similarity=0.073 Sum_probs=64.1
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccccccccccccccchhhcccccccccccccCHHHHHHHHHHH
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF 167 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (535)
..++.|||+|..|+.-..--.+-+.+||++|--+.+... +|.
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~----------------------------mD~---------- 252 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV----------------------------MDG---------- 252 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc----------------------------cCH----------
Confidence 357799999999988776555678899999987654211 121
Q ss_pred HHHHHHHHHHHHHhcCcEEEEeEEEE-e--c-CC--EEEEce------eEEEcceEEEeeCceecC
Q psy14461 168 CIRAKNDSMRELKALGIDIVRTAAAF-T--N-PH--TIKLSN------RSVTGFNFLLAVERRCLP 221 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~gV~~~~g~~~~-~--~-~~--~v~~~~------~~~~~d~lViATGs~p~~ 221 (535)
++....+..+++.|++|..++-.. . + +. .|++.+ .++++|.+++|+|-+|..
T Consensus 253 --Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t 316 (506)
T KOG1335|consen 253 --EISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFT 316 (506)
T ss_pred --HHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccc
Confidence 122223466778899999886332 1 1 11 344432 679999999999999986
No 391
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.73 E-value=0.42 Score=52.83 Aligned_cols=58 Identities=17% Similarity=0.088 Sum_probs=38.1
Q ss_pred HHHHHhhhcCCeEE-cceEEEEEEEeCC---CcEE-EEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 285 RILLSSLTKAGVSI-QCCVIEKVISSFD---GMKG-VRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 285 ~~~~~~l~~~gV~i-~~~~v~~i~~~~~---~~~~-v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
..+.+.+++.||++ .++.++++..+++ +++. +...+..+|+...+.++.||+|||-..
T Consensus 144 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 144 QTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 33445556678999 9999999875421 4432 333222356555789999999999654
No 392
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=94.68 E-value=0.41 Score=52.89 Aligned_cols=52 Identities=19% Similarity=-0.024 Sum_probs=35.8
Q ss_pred HhhhcCCeEE-cceEEEEEEEeCCCcEE-EEEecCCCCCceEEEc-CEEEEccCCCCC
Q psy14461 289 SSLTKAGVSI-QCCVIEKVISSFDGMKG-VRGFHPESKEPFADVF-KTVVNAMEKKFD 343 (535)
Q Consensus 289 ~~l~~~gV~i-~~~~v~~i~~~~~~~~~-v~~~~~~~G~~~~~~~-D~vi~a~G~~p~ 343 (535)
+.+++.||++ .++.++++..+ ++++. |... .+|+...+.+ +.||+|+|--..
T Consensus 229 ~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~--~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 229 YSLRARGVRILTQTDVESLETD-HGRVIGATVV--QGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEe--cCCeEEEEEccceEEECCCCccc
Confidence 3445578999 99999998764 45543 5554 2565556786 789999986544
No 393
>PRK09126 hypothetical protein; Provisional
Probab=94.65 E-value=0.032 Score=58.21 Aligned_cols=34 Identities=15% Similarity=-0.048 Sum_probs=31.4
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
.+|+|||+|++|+++|+.+...+.+|+|+|+.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 5789999999999999999889999999999875
No 394
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=94.65 E-value=0.032 Score=58.82 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=30.1
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS 124 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~ 124 (535)
||+|||+|.+|+.+|+.+...+.+|+|+||.+..+
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~g 35 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLG 35 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccc
Confidence 58999999999999999999999999999998643
No 395
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.61 E-value=0.045 Score=42.95 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=33.8
Q ss_pred EEEEeCCCchhhHHHHHHHHHhcCCcceEEEEEeeCCccHHHHHHHHHhhCC
Q psy14461 60 ILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQ 111 (535)
Q Consensus 60 v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~iiG~G~aG~~~al~~~~~~ 111 (535)
|.+|+++.|| +|.+++.++.+.+..++.+++.- . +. ....+....+.
T Consensus 1 v~ly~~~~Cp-~C~~a~~~L~~~~i~~~~~di~~--~-~~-~~~~~~~~~g~ 47 (79)
T TIGR02181 1 VTIYTKPYCP-YCTRAKALLSSKGVTFTEIRVDG--D-PA-LRDEMMQRSGR 47 (79)
T ss_pred CEEEecCCCh-hHHHHHHHHHHcCCCcEEEEecC--C-HH-HHHHHHHHhCC
Confidence 4689999999 99999999999998876666542 2 33 44555554443
No 396
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.56 E-value=0.038 Score=57.81 Aligned_cols=34 Identities=12% Similarity=-0.129 Sum_probs=31.2
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
++|+|||+|++|+++|+.+...+.+|+|+|+.+.
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 5789999999999999998888999999999864
No 397
>PRK08071 L-aspartate oxidase; Provisional
Probab=94.54 E-value=0.34 Score=52.62 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc-----------------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD----------------------------------------- 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~----------------------------------------- 280 (535)
.|+|||+|..|+-+|..+++ |.+|+++++ +.......
T Consensus 5 DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~~~ 83 (510)
T PRK08071 5 DVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYLVE 83 (510)
T ss_pred CEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHHHH
Q ss_pred ----------------------------------------------HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc
Q psy14461 281 ----------------------------------------------QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM 313 (535)
Q Consensus 281 ----------------------------------------------~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~ 313 (535)
..+.+.+.+.++ .||++ .++.++++..+ +++
T Consensus 84 ~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~-~g~ 161 (510)
T PRK08071 84 EGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIE-NGR 161 (510)
T ss_pred HHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeec-CCE
Q ss_pred EEEEEecCCCCCceEEEcCEEEEccC
Q psy14461 314 KGVRGFHPESKEPFADVFKTVVNAME 339 (535)
Q Consensus 314 ~~v~~~~~~~G~~~~~~~D~vi~a~G 339 (535)
+.-......+|+...+.++.||+|+|
T Consensus 162 v~Gv~~~~~~g~~~~i~Ak~VVlATG 187 (510)
T PRK08071 162 CIGVLTKDSEGKLKRYYADYVVLASG 187 (510)
T ss_pred EEEEEEEECCCcEEEEEcCeEEEecC
No 398
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.51 E-value=0.036 Score=57.87 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=30.4
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS 121 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~ 121 (535)
.+|+|||+|++|+++|+.+...+.+|+|||+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 578999999999999999888899999999875
No 399
>PRK07233 hypothetical protein; Provisional
Probab=94.45 E-value=0.04 Score=58.18 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
..+.+.+.+.+++.|+++ .+++|++|+.+ ++.+.+... +|+ ++++|.||+|++..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~~---~~~--~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVEV---DGE--EEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEEe---CCc--eEECCEEEECCCHH
Confidence 456777888888889999 99999999876 454543332 555 79999999998753
No 400
>KOG0029|consensus
Probab=94.43 E-value=0.042 Score=59.11 Aligned_cols=39 Identities=15% Similarity=-0.123 Sum_probs=35.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK 127 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~ 127 (535)
.+|+|||+|.+|++||-.+...+.+|+|+|..+.++++.
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRI 54 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCcee
Confidence 457999999999999999999999999999999887654
No 401
>KOG2820|consensus
Probab=94.41 E-value=0.44 Score=47.67 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=28.8
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
..++|||+|.-|+-.|..|+++|.++.++++
T Consensus 8 ~~viiVGAGVfG~stAyeLaK~g~killLeq 38 (399)
T KOG2820|consen 8 RDVIIVGAGVFGLSTAYELAKRGDKILLLEQ 38 (399)
T ss_pred eeEEEEcccccchHHHHHHHhcCCeEEEEec
Confidence 5699999999999999999999999999877
No 402
>PRK07395 L-aspartate oxidase; Provisional
Probab=94.37 E-value=0.27 Score=53.87 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=0.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc-----------------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD----------------------------------------- 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~----------------------------------------- 280 (535)
.|+|||+|..|+-+|..+++ |.+|.|+++ +..-....
T Consensus 11 DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~~~~ 89 (553)
T PRK07395 11 DVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVRFLVE 89 (553)
T ss_pred CEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHHHHHH
Q ss_pred --------------------------------------------HHHHHHHHHhhhcC-CeEE-cceEEEEEEEeCC-Cc
Q psy14461 281 --------------------------------------------QEMVRILLSSLTKA-GVSI-QCCVIEKVISSFD-GM 313 (535)
Q Consensus 281 --------------------------------------------~~~~~~~~~~l~~~-gV~i-~~~~v~~i~~~~~-~~ 313 (535)
..+...+.+.++++ ||++ .++.++++..+++ ++
T Consensus 90 ~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~ 169 (553)
T PRK07395 90 QAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGR 169 (553)
T ss_pred HHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCE
Q ss_pred EE-EEEecCCCCCceEEEcCEEEEccC
Q psy14461 314 KG-VRGFHPESKEPFADVFKTVVNAME 339 (535)
Q Consensus 314 ~~-v~~~~~~~G~~~~~~~D~vi~a~G 339 (535)
+. +.... +|+...+.++.||+|||
T Consensus 170 v~Gv~~~~--~g~~~~i~AkaVILATG 194 (553)
T PRK07395 170 CQGISLLY--QGQITWLRAGAVILATG 194 (553)
T ss_pred EEEEEEEE--CCeEEEEEcCEEEEcCC
No 403
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=94.35 E-value=0.042 Score=57.15 Aligned_cols=34 Identities=18% Similarity=-0.037 Sum_probs=30.8
Q ss_pred EEEeeCCccHHHHHHHHHhhCC-CeEEEEecCCcc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQ-RRDELQERGSHL 123 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~~~ 123 (535)
+|+|||+|++|+.+|+.+...+ .+|+|+|+.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 4799999999999999999999 999999998743
No 404
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=94.31 E-value=0.043 Score=57.29 Aligned_cols=35 Identities=9% Similarity=-0.057 Sum_probs=31.6
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
.++|+|||+|++|+++|+.+...+.+|+|+|+.+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 36899999999999999998888999999999763
No 405
>PRK07588 hypothetical protein; Provisional
Probab=94.31 E-value=0.041 Score=57.48 Aligned_cols=34 Identities=15% Similarity=-0.047 Sum_probs=30.9
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
+|+|||+|++|+++|+.+...+.+|+|+|+.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 6899999999999999998899999999998743
No 406
>PRK11445 putative oxidoreductase; Provisional
Probab=94.30 E-value=0.044 Score=56.45 Aligned_cols=33 Identities=6% Similarity=-0.189 Sum_probs=29.9
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
++|+|||+|++|+++|+.+... .+|+|+|+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 5899999999999999988777 99999999874
No 407
>PRK08013 oxidoreductase; Provisional
Probab=94.28 E-value=0.04 Score=57.86 Aligned_cols=34 Identities=15% Similarity=-0.033 Sum_probs=31.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
++|+|||+|++|+++|+.+...+.+|+|+|+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 5789999999999999998889999999999875
No 408
>PRK07538 hypothetical protein; Provisional
Probab=94.25 E-value=0.045 Score=57.70 Aligned_cols=35 Identities=14% Similarity=-0.073 Sum_probs=31.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
++|+|||+|++|+++|+.+...+.+|+|||+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 36899999999999999888889999999998743
No 409
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.24 E-value=0.041 Score=57.76 Aligned_cols=33 Identities=18% Similarity=-0.008 Sum_probs=30.4
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS 121 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~ 121 (535)
.+|+|||+|++|+++|+.+...+.+|+|+|+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 478999999999999999888899999999976
No 410
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=94.24 E-value=0.044 Score=56.85 Aligned_cols=34 Identities=15% Similarity=-0.012 Sum_probs=30.9
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
+|+|||+|++|+.+|+.+...+.+|+|+|+.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 4799999999999999988889999999999753
No 411
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.23 E-value=0.051 Score=56.79 Aligned_cols=35 Identities=14% Similarity=0.023 Sum_probs=31.9
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
.+|+|||+|++|+.+|+.+...+.+|+|+|+.+.+
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 57899999999999999998899999999998754
No 412
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=94.14 E-value=0.051 Score=57.33 Aligned_cols=39 Identities=13% Similarity=-0.049 Sum_probs=35.6
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccccc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRKK 128 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~~ 128 (535)
+|+|+|+|-||+++|..+...+.+|||+|+++++++...
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVA 40 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceee
Confidence 689999999999999999999999999999998876543
No 413
>PRK07236 hypothetical protein; Provisional
Probab=94.13 E-value=0.051 Score=56.73 Aligned_cols=34 Identities=18% Similarity=-0.065 Sum_probs=31.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
.+|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 5789999999999999999889999999999864
No 414
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=94.13 E-value=0.056 Score=56.06 Aligned_cols=38 Identities=11% Similarity=-0.069 Sum_probs=33.0
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR 126 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~ 126 (535)
++++|||+|.+|+.+|.++...+.+|+|+|+.+.+++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 47899999999999998888778999999998876553
No 415
>KOG0029|consensus
Probab=94.12 E-value=0.065 Score=57.63 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL 275 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~ 275 (535)
..++|+|||+|.+|+-+|..|.+.|.+|+|++. +++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 357899999999999999999999999999987 655
No 416
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.11 E-value=0.046 Score=56.85 Aligned_cols=33 Identities=12% Similarity=-0.098 Sum_probs=30.2
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS 121 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~ 121 (535)
.+|+|||+|++|+++|+.+...+.+|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 578999999999999999988999999999863
No 417
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=94.10 E-value=0.053 Score=56.74 Aligned_cols=34 Identities=18% Similarity=-0.013 Sum_probs=31.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
.+|+|||+|++|+++|+.+...+.+|+|+|+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5789999999999999999889999999999874
No 418
>KOG4716|consensus
Probab=94.10 E-value=0.77 Score=45.94 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=28.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
-.++|||||.-|+.+|...+..|++|-.++-
T Consensus 20 yDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 20 YDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred ccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 4689999999999999999999999999876
No 419
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=94.09 E-value=0.065 Score=56.98 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHhCC--CcEEEEEc-CcCC
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLG--VPVTLVYS-RRLL 276 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~-~~~l 276 (535)
++|+|||||.+|+-+|..|++.| .+|+|++. +++.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 47999999999999999999987 89999998 6553
No 420
>PRK07233 hypothetical protein; Provisional
Probab=94.08 E-value=0.066 Score=56.57 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=31.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL 276 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l 276 (535)
+|+|||||..|+-+|..|++.|.+|+|+++ +++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~G 35 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG 35 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence 589999999999999999999999999998 7653
No 421
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.07 E-value=0.045 Score=57.19 Aligned_cols=32 Identities=22% Similarity=0.093 Sum_probs=30.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecC
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERG 120 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~ 120 (535)
.+|+|+|+|++|+..|+.+...+.+|+|+|+.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 57899999999999999999999999999998
No 422
>PLN02268 probable polyamine oxidase
Probab=94.06 E-value=0.058 Score=57.26 Aligned_cols=38 Identities=13% Similarity=-0.025 Sum_probs=33.9
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccccc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFRK 127 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~~ 127 (535)
+|+|||+|-+|+++|..+...+.+|+|+|+.+.++++.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 57999999999999988888889999999999887664
No 423
>KOG1800|consensus
Probab=94.06 E-value=0.19 Score=50.88 Aligned_cols=85 Identities=12% Similarity=0.043 Sum_probs=57.1
Q ss_pred CcEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcCCcc----------CcHHHHHHHHHhhhcCCeEE-cceEE-EEE
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRLLKH----------FDQEMVRILLSSLTKAGVSI-QCCVI-EKV 306 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~l~~----------~~~~~~~~~~~~l~~~gV~i-~~~~v-~~i 306 (535)
.+|.|||+|+.|+-.|..|.++ +.+|+++++ +.++.. +-+.+...+.+.++.....+ .|..| +.+
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~dv 100 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGRDV 100 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceecccc
Confidence 3899999999999999888774 689999998 766431 12334455666677777777 66655 222
Q ss_pred EEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 307 ISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 307 ~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
.+. +.+-.+|+|++|.|...
T Consensus 101 ----------sl~------eL~~~ydavvLaYGa~~ 120 (468)
T KOG1800|consen 101 ----------SLK------ELTDNYDAVVLAYGADG 120 (468)
T ss_pred ----------cHH------HHhhcccEEEEEecCCC
Confidence 121 11345788888887643
No 424
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=94.04 E-value=0.052 Score=58.90 Aligned_cols=38 Identities=8% Similarity=0.020 Sum_probs=33.6
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF 125 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~ 125 (535)
..||+|||+|.+|+.+|+.....+.+|+|+||.+..+.
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 35899999999999999999889999999999986543
No 425
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=94.03 E-value=0.057 Score=57.45 Aligned_cols=35 Identities=14% Similarity=0.029 Sum_probs=31.5
Q ss_pred EEEeeCCccHHHHHHHHHhhCC-CeEEEEecCCccc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQ-RRDELQERGSHLS 124 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~~~~ 124 (535)
||+|||+|.+|+.+|+.+...+ .+|+|+||.+..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~g 36 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIG 36 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCC
Confidence 5799999999999999998888 9999999988643
No 426
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=94.02 E-value=0.058 Score=59.81 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=33.1
Q ss_pred CCCCcCCCCEEEeCCcCC-CCCCcHHHHHHHHHHHHHHHh
Q psy14461 366 EKDQTSVGNIFAVGGIVH-GKPNNASMAAISARLIIERLY 404 (535)
Q Consensus 366 ~~~~T~~~~IyA~GD~~~-~~~~~~~~A~~~g~~aa~~i~ 404 (535)
++++|++||+||+|||+. +...+...+..+|++|+.++.
T Consensus 389 ~~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~ 428 (608)
T PRK06854 389 YNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAV 428 (608)
T ss_pred cccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHH
Confidence 889999999999999973 245677888889999999886
No 427
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.01 E-value=0.65 Score=51.05 Aligned_cols=94 Identities=19% Similarity=0.189 Sum_probs=0.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc-----------------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD----------------------------------------- 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~----------------------------------------- 280 (535)
.|+|||+| .|+.+|...++.|.+|.++++ +.+-..-.
T Consensus 18 DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~~~g~~ds~e~~~~y~~~~~~~~~~~~ 96 (564)
T PRK12845 18 DLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLDEAGAGDTLERARTYLDSVVGGSAPAE 96 (564)
T ss_pred CEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHHHHhCcchhHHHHHHHHHHHhCCCCCHH
Q ss_pred ---------HHHHHHHHHh-------------------------------------------------------------
Q psy14461 281 ---------QEMVRILLSS------------------------------------------------------------- 290 (535)
Q Consensus 281 ---------~~~~~~~~~~------------------------------------------------------------- 290 (535)
+++.+.+++.
T Consensus 97 li~~~~~~~~~~i~wl~~~~gv~~~~~~~~~d~~~~~~g~~~~gr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 176 (564)
T PRK12845 97 RSAAFLDNGSATVDMLRRTTPMRFFWARGYSDYHPEQPGGSAAGRTCECRPFDTAVLGEYRPRLRPGVMEVSIPMPVTGA 176 (564)
T ss_pred HHHHHHHhhHHHHHHHHhcCCceEEECCCCCCCCCCCCCCCCCCCcccCCCCChhHhhhHHHhcCCccccccccccccHH
Q ss_pred --------------------------------------------------hhcCCeEE-cceEEEEEEEeCCCcEEEEEe
Q psy14461 291 --------------------------------------------------LTKAGVSI-QCCVIEKVISSFDGMKGVRGF 319 (535)
Q Consensus 291 --------------------------------------------------l~~~gV~i-~~~~v~~i~~~~~~~~~v~~~ 319 (535)
+++.||++ +++.++++..+++..+-|...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~ 256 (564)
T PRK12845 177 DYRWLNLMARVPRKALPRIAKRLAQGVGGLALGRRYAAGGQALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVD 256 (564)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHHHhhhccCCcccCChHHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEE
Q ss_pred cCCCCCceEEEcC-EEEEccC
Q psy14461 320 HPESKEPFADVFK-TVVNAME 339 (535)
Q Consensus 320 ~~~~G~~~~~~~D-~vi~a~G 339 (535)
. +|++..+.+. .||+|+|
T Consensus 257 ~--~g~~~~i~a~kaVILAtG 275 (564)
T PRK12845 257 H--RGREVTVTARRGVVLAAG 275 (564)
T ss_pred E--CCcEEEEEcCCEEEEecC
No 428
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=94.01 E-value=0.055 Score=57.01 Aligned_cols=37 Identities=16% Similarity=0.004 Sum_probs=31.8
Q ss_pred EEEeeCCccHHHHHHHHHhhCC--CeEEEEecCCccccc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQ--RRDELQERGSHLSFR 126 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~--~~V~lie~~~~~~~~ 126 (535)
+++|||+|.+|+++|.++...+ .+|+|+|+++.+++.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~ 40 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGL 40 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCce
Confidence 6799999999999998776666 999999999877544
No 429
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=93.99 E-value=0.065 Score=56.35 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-C
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R 273 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~ 273 (535)
++|+|||||.+|+-+|..|++.|.+|+++++ +
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4799999999999999999999999999998 5
No 430
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.99 E-value=0.066 Score=54.55 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEcC
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSR 273 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 273 (535)
.|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999983
No 431
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=93.98 E-value=0.06 Score=57.56 Aligned_cols=39 Identities=13% Similarity=-0.087 Sum_probs=33.6
Q ss_pred EEEEeeCCccHHHHHHHHHhhC----CCeEEEEecCCcccccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTN----QRRDELQERGSHLSFRK 127 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~----~~~V~lie~~~~~~~~~ 127 (535)
.+|+|||+|.+|+++|..+... +.+|+|+|+.+.+++..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI 45 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence 4689999999999999887776 89999999999886653
No 432
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=93.95 E-value=0.059 Score=56.38 Aligned_cols=34 Identities=18% Similarity=-0.043 Sum_probs=31.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
.+|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 5789999999999999999889999999999874
No 433
>PRK07208 hypothetical protein; Provisional
Probab=93.94 E-value=0.06 Score=57.95 Aligned_cols=38 Identities=11% Similarity=-0.115 Sum_probs=34.0
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR 126 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~ 126 (535)
.+|+|||+|.+|+++|..+...+.+|+|+|+.+.+++.
T Consensus 5 ~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 5 KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGI 42 (479)
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 46899999999999999888889999999999987654
No 434
>KOG0685|consensus
Probab=93.92 E-value=0.071 Score=55.52 Aligned_cols=44 Identities=11% Similarity=-0.061 Sum_probs=37.5
Q ss_pred EEEeeCCccHHHHHHHHHh-hCCCeEEEEecCCcccccccccccc
Q psy14461 90 YLDRIGDEGILLEEELKRQ-TNQRRDELQERGSHLSFRKKRRLYY 133 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~-~~~~~V~lie~~~~~~~~~~~l~~~ 133 (535)
+|+|||+|-||++||-++. .+...++|+|.+++++++...+|+.
T Consensus 23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~ 67 (498)
T KOG0685|consen 23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFA 67 (498)
T ss_pred eEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcC
Confidence 6899999999999998887 5668999999999998876666654
No 435
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=93.89 E-value=0.056 Score=58.00 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=31.4
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
.+|+|||+|.+|+.+|+.+...+.+|+|+||.+.
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5789999999999999999999999999999863
No 436
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.87 E-value=0.052 Score=56.58 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=31.1
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
++|+|||+|++|+.+|+.+...+.+|+|||+.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 5789999999999999988888999999999864
No 437
>PRK06475 salicylate hydroxylase; Provisional
Probab=93.84 E-value=0.071 Score=55.96 Aligned_cols=34 Identities=15% Similarity=-0.001 Sum_probs=30.7
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
+|+|||+|++|+++|+.+...+.+|+|+|+.+.+
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 5799999999999999888889999999998753
No 438
>PRK06185 hypothetical protein; Provisional
Probab=93.77 E-value=0.06 Score=56.51 Aligned_cols=35 Identities=9% Similarity=-0.116 Sum_probs=31.4
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
..+|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 36789999999999999988888999999999753
No 439
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=93.75 E-value=0.18 Score=53.59 Aligned_cols=33 Identities=15% Similarity=-0.007 Sum_probs=29.2
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS 121 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~ 121 (535)
++|+|||+|.||+.||+...+.+.++.|+--+.
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 688999999999999999999998888887654
No 440
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=93.74 E-value=0.063 Score=58.18 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc-EEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM-KGVRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~-~~v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
..+.+.+.+.+++.|+++ .++.|++|..+ +++ +.|++ .+|+ ++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~---~~g~--~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHL---ADGE--RLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEE---CCCC--EEECCEEEECCcHH
Confidence 467788888888999999 99999999876 344 35665 3676 78999999988753
No 441
>PRK07121 hypothetical protein; Validated
Probab=93.71 E-value=0.07 Score=57.70 Aligned_cols=36 Identities=11% Similarity=-0.023 Sum_probs=32.8
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLS 124 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~ 124 (535)
.+|+|||+|.+|+.+|+.....+.+|+|+||....+
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~g 56 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAG 56 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 589999999999999999998999999999988643
No 442
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=93.69 E-value=0.07 Score=56.99 Aligned_cols=37 Identities=11% Similarity=-0.129 Sum_probs=33.1
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCccccc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSFR 126 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~~ 126 (535)
+|+|||+|.+|+++|..+...+.+|+|+|+.+.+++.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGK 37 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence 3689999999999999988889999999999987654
No 443
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=93.67 E-value=0.53 Score=49.93 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.5
Q ss_pred EECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 246 VLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 246 ViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
|||+|..|+-+|..+++.|.+|.++++
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK 27 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEA 27 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeC
Confidence 688888888888888888888888887
No 444
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=93.66 E-value=0.079 Score=57.24 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
..+.+.+.+.+++.|.++ +++.|++|..+ +++. .+.+.+..+|+.+++.+|.||.++...
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 457788888888899999 99999999876 3432 344432111212378999999998753
No 445
>PRK05868 hypothetical protein; Validated
Probab=93.66 E-value=0.076 Score=55.19 Aligned_cols=35 Identities=11% Similarity=-0.118 Sum_probs=31.3
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
.+|+|+|+|++|+.+|+.+...+.+|+|||+.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 46899999999999999888889999999998753
No 446
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.66 E-value=0.058 Score=44.95 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=30.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
.+++|+|||||.+|..-+..|.+.|++||++.+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~ 38 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISP 38 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 468999999999999999999999999999986
No 447
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.65 E-value=0.062 Score=56.27 Aligned_cols=34 Identities=6% Similarity=-0.083 Sum_probs=29.5
Q ss_pred EEEEeeCCccHHHHHHHHHhhC--CCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTN--QRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~--~~~V~lie~~~~ 122 (535)
++|+|||+|++|+++|+.+... +.+|+|+|+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 4689999999999999988766 489999999864
No 448
>PLN02576 protoporphyrinogen oxidase
Probab=93.62 E-value=0.07 Score=57.68 Aligned_cols=39 Identities=8% Similarity=-0.092 Sum_probs=33.9
Q ss_pred EEEEeeCCccHHHHHHHHHhhC-CCeEEEEecCCcccccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTN-QRRDELQERGSHLSFRK 127 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~-~~~V~lie~~~~~~~~~ 127 (535)
.+|+|||+|.+|+++|..+... +.+|+|+|+.+.+++..
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence 3689999999999999888777 89999999999886653
No 449
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.56 E-value=0.081 Score=55.79 Aligned_cols=35 Identities=17% Similarity=0.056 Sum_probs=30.1
Q ss_pred EEEEeeCCccHHHHHHHHHhhCC-CeEEEEecCCcc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQ-RRDELQERGSHL 123 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~-~~V~lie~~~~~ 123 (535)
++|+|||+|++|+++|+.+...+ .+|+|+|+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 36899999999999999887766 599999998754
No 450
>KOG2404|consensus
Probab=93.54 E-value=0.51 Score=46.88 Aligned_cols=46 Identities=22% Similarity=0.088 Sum_probs=35.4
Q ss_pred CeEE-cceEEEEEEEeCCCcE-EEEEecCCCCCceEEEcCEEEEccCCCC
Q psy14461 295 GVSI-QCCVIEKVISSFDGMK-GVRGFHPESKEPFADVFKTVVNAMEKKF 342 (535)
Q Consensus 295 gV~i-~~~~v~~i~~~~~~~~-~v~~~~~~~G~~~~~~~D~vi~a~G~~p 342 (535)
-+++ .+++|+.|... ++++ -|++.+ .+|+...+.+|.|++|+|--.
T Consensus 159 ~~ki~~nskvv~il~n-~gkVsgVeymd-~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRN-NGKVSGVEYMD-ASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred HHhhhhcceeeeeecC-CCeEEEEEEEc-CCCCccceecCceEEecCCcC
Confidence 3678 99999999966 5665 466665 577777889999999998544
No 451
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.54 E-value=0.062 Score=56.07 Aligned_cols=32 Identities=13% Similarity=-0.173 Sum_probs=29.1
Q ss_pred EEEEeeCCccHHHHHHHHHhhC---CCeEEEEecC
Q psy14461 89 LYLDRIGDEGILLEEELKRQTN---QRRDELQERG 120 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~---~~~V~lie~~ 120 (535)
++|+|||+|++|+++|+.+... +.+|+|+|+.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 5789999999999999988776 9999999995
No 452
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=93.51 E-value=0.84 Score=54.68 Aligned_cols=100 Identities=22% Similarity=0.291 Sum_probs=0.0
Q ss_pred cCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccC-------------------------------------
Q psy14461 238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHF------------------------------------- 279 (535)
Q Consensus 238 ~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~------------------------------------- 279 (535)
....-.|+|||+|..|+-+|...++.|.+|.++++ +..-...
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~ 485 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKG 485 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccC
Q ss_pred ---------------------------------------------------------cHHHHHHHHHhhhcC---CeEE-
Q psy14461 280 ---------------------------------------------------------DQEMVRILLSSLTKA---GVSI- 298 (535)
Q Consensus 280 ---------------------------------------------------------~~~~~~~~~~~l~~~---gV~i- 298 (535)
...+...+.+.+++. ||++
T Consensus 486 ~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~ 565 (1167)
T PTZ00306 486 GHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIM 565 (1167)
T ss_pred CCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEE
Q ss_pred cceEEEEEEEeCC----------CcEEEEEecCC---CCCceEEEcCEEEEccC
Q psy14461 299 QCCVIEKVISSFD----------GMKGVRGFHPE---SKEPFADVFKTVVNAME 339 (535)
Q Consensus 299 ~~~~v~~i~~~~~----------~~~~v~~~~~~---~G~~~~~~~D~vi~a~G 339 (535)
+++.++++..+ + ...-|..++ . +|+...+.++.||+|||
T Consensus 566 ~~t~~~~LI~d-~~~~~~G~~~~~V~Gv~~~~-~~~~~g~~~~i~AkaVILATG 617 (1167)
T PTZ00306 566 TETTVTSLLSE-SSARPDGVREIRVTGVRYKQ-ASDASGQVMDLLADAVILATG 617 (1167)
T ss_pred ECCEEEEEEec-CCcccCCCccceEEEEEEEe-cccCCCcEEEEEeceEEEecC
No 453
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.51 E-value=0.073 Score=49.25 Aligned_cols=34 Identities=35% Similarity=0.338 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL 276 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l 276 (535)
+|.|||+|..|..+|..+++.|.+|+++++ +.-+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l 35 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEAL 35 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHH
Confidence 589999999999999999999999999997 4433
No 454
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.49 E-value=0.09 Score=56.74 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=31.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL 275 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~ 275 (535)
.+|+|||+|.-|+-+|..|++.|.+|+|+|+ +.+
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~ 38 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV 38 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence 5799999999999999999999999999998 654
No 455
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=93.47 E-value=0.078 Score=55.73 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=29.5
Q ss_pred cEEEEeCCCchhhHHHHHHHHHhcCCcceEEEEE
Q psy14461 59 RILIFTHAVLREENARAERYLNARGDRFAVLYLD 92 (535)
Q Consensus 59 ~v~v~~k~~cp~~~~~~k~~~~~~~~~~~~~~v~ 92 (535)
+|.||++++|| +|.++|+++.+.|.+++.++|.
T Consensus 3 ~V~vys~~~Cp-~C~~aK~~L~~~gi~~~~idi~ 35 (410)
T PRK12759 3 EVRIYTKTNCP-FCDLAKSWFGANDIPFTQISLD 35 (410)
T ss_pred cEEEEeCCCCH-HHHHHHHHHHHCCCCeEEEECC
Confidence 58999999999 9999999999999988766654
No 456
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.43 E-value=0.09 Score=54.46 Aligned_cols=31 Identities=19% Similarity=0.085 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
-+|+|||||.+|+-+|..|++.|.+|+|+++
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~ 34 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDR 34 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3699999999999999999999999999998
No 457
>PLN02268 probable polyamine oxidase
Probab=93.43 E-value=0.1 Score=55.39 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=31.6
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL 276 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l 276 (535)
.+|+|||+|.+|+-+|..|.+.|.+|+|++. +++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~G 36 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIG 36 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 3799999999999999999999999999997 6653
No 458
>PRK08275 putative oxidoreductase; Provisional
Probab=93.42 E-value=0.087 Score=57.83 Aligned_cols=45 Identities=27% Similarity=0.161 Sum_probs=35.5
Q ss_pred CceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHh
Q psy14461 360 SYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY 404 (535)
Q Consensus 360 G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~ 404 (535)
|.|.||+.++|++||+||+|||...+......|.-.|++|+.++.
T Consensus 357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 357 SGVWVNEKAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAA 401 (554)
T ss_pred CcEEECCCCccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999872133344457888888888875
No 459
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.40 E-value=0.092 Score=54.46 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
+|+|||||.+|+-+|..|++.|.+|+|+++
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 589999999999999999999999999998
No 460
>KOG2415|consensus
Probab=93.39 E-value=0.078 Score=54.14 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=32.8
Q ss_pred cceEEEEEeeCCccHHHHHHHHHh------hCCCeEEEEecCCcccc
Q psy14461 85 RFAVLYLDRIGDEGILLEEELKRQ------TNQRRDELQERGSHLSF 125 (535)
Q Consensus 85 ~~~~~~v~iiG~G~aG~~~al~~~------~~~~~V~lie~~~~~~~ 125 (535)
..+.++|+|+|+||||+++|++.. ....+|.|+||...++.
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gg 119 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGG 119 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCC
Confidence 346789999999999999998543 34578999999986543
No 461
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=93.36 E-value=0.072 Score=56.64 Aligned_cols=32 Identities=9% Similarity=-0.050 Sum_probs=28.5
Q ss_pred EEEeeCCccHHHHHHHHHhh----CCCeEEEEecCC
Q psy14461 90 YLDRIGDEGILLEEELKRQT----NQRRDELQERGS 121 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~----~~~~V~lie~~~ 121 (535)
+|+|||+|++|+++|+.+.. .+.+|+|||+.+
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 68999999999999998876 689999999953
No 462
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=0.11 Score=55.01 Aligned_cols=35 Identities=29% Similarity=0.252 Sum_probs=32.5
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL 276 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l 276 (535)
+||+|+|+|..|+-+|..|+..|.+||++++ +.+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G 36 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG 36 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence 5899999999999999999999999999998 7664
No 463
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=93.29 E-value=0.07 Score=56.08 Aligned_cols=32 Identities=16% Similarity=0.044 Sum_probs=29.7
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecC
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERG 120 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~ 120 (535)
.+|+|+|+|++|+++|+.+...+.+|+|+|+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 57899999999999999888889999999986
No 464
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.20 E-value=0.091 Score=61.08 Aligned_cols=47 Identities=23% Similarity=0.184 Sum_probs=37.0
Q ss_pred CCceEcCCCCCcCCCCEEEeCCcCCCCCCcHHHHHHHHHHHHHHHhC
Q psy14461 359 KSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405 (535)
Q Consensus 359 ~G~i~vd~~~~T~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 405 (535)
.|.|.||..++|++||+||+|||+.+.......|.-.|+.|+.++..
T Consensus 361 ~GGi~vd~~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~ 407 (897)
T PRK13800 361 ASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAG 407 (897)
T ss_pred cceEEecCCCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHH
Confidence 47899999999999999999999722233444578888888888753
No 465
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.19 E-value=0.13 Score=46.51 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=30.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEE
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY 271 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~ 271 (535)
.+++|+|||||.+|..-+..|.+.|++|+++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 46899999999999999999999999999995
No 466
>PRK07208 hypothetical protein; Provisional
Probab=93.15 E-value=0.13 Score=55.36 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=32.5
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCC
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLL 276 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l 276 (535)
.++|+|||||.+|+-+|..|+++|.+|+++++ +++.
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G 40 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG 40 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 46899999999999999999999999999998 6543
No 467
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=93.08 E-value=0.12 Score=55.79 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=31.7
Q ss_pred CcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL 275 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~ 275 (535)
++|+|||+|..|+-+|..|++.|.+|+++++ +.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 5799999999999999999999999999998 655
No 468
>PRK06126 hypothetical protein; Provisional
Probab=93.06 E-value=0.099 Score=57.31 Aligned_cols=34 Identities=18% Similarity=0.032 Sum_probs=31.5
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
.+|+|||+|++|+.+|+.+...+.+|+|+|+.+.
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 5789999999999999999999999999999874
No 469
>PRK07512 L-aspartate oxidase; Provisional
Probab=92.95 E-value=0.75 Score=50.01 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=0.0
Q ss_pred hccCCCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc----------------------------------
Q psy14461 236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD---------------------------------- 280 (535)
Q Consensus 236 ~~~~~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~---------------------------------- 280 (535)
++......|+|||+|..|+-+|..++ +.+|+++++ +.....-.
T Consensus 4 ~~~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~ 81 (513)
T PRK07512 4 DLRILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDP 81 (513)
T ss_pred cccCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCH
Q ss_pred ------------------------------------------------------HHHHHHHHHhhhcC-CeEE-cceEEE
Q psy14461 281 ------------------------------------------------------QEMVRILLSSLTKA-GVSI-QCCVIE 304 (535)
Q Consensus 281 ------------------------------------------------------~~~~~~~~~~l~~~-gV~i-~~~~v~ 304 (535)
..+.+.+.+.+++. ||++ .++.++
T Consensus 82 ~~v~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~ 161 (513)
T PRK07512 82 AVAALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEAR 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChh
Q ss_pred EEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccC
Q psy14461 305 KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME 339 (535)
Q Consensus 305 ~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G 339 (535)
++..+++.-+-+...+ ++....+.++.||+|+|
T Consensus 162 ~Li~~~g~v~Gv~~~~--~~~~~~i~Ak~VVLATG 194 (513)
T PRK07512 162 RLLVDDGAVAGVLAAT--AGGPVVLPARAVVLATG 194 (513)
T ss_pred heeecCCEEEEEEEEe--CCeEEEEECCEEEEcCC
No 470
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=92.90 E-value=0.1 Score=56.37 Aligned_cols=55 Identities=24% Similarity=0.280 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhcCCeEE-cceEEEEEEEeCCCc-EEEEEecCCCCCceEEEcCEEEEccCCC
Q psy14461 281 QEMVRILLSSLTKAGVSI-QCCVIEKVISSFDGM-KGVRGFHPESKEPFADVFKTVVNAMEKK 341 (535)
Q Consensus 281 ~~~~~~~~~~l~~~gV~i-~~~~v~~i~~~~~~~-~~v~~~~~~~G~~~~~~~D~vi~a~G~~ 341 (535)
..+.+.+.+.+++.|+++ .++.|++|..+ +++ ..|.+ .+|+ ++++|.||++.|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~---~~g~--~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKL---ADGE--KIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEe---CCCC--EEEcCEEEECCChH
Confidence 467778888899999999 99999999875 343 34555 3676 78999999998864
No 471
>KOG1346|consensus
Probab=92.84 E-value=0.13 Score=52.54 Aligned_cols=46 Identities=15% Similarity=0.053 Sum_probs=36.8
Q ss_pred cCCeEE-cceEEEEEEEeCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCC
Q psy14461 293 KAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346 (535)
Q Consensus 293 ~~gV~i-~~~~v~~i~~~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~ 346 (535)
.-||.+ .+..+.+|... + ..|.++ ||. +|.+|-+++|||.+|....
T Consensus 269 nGGvAvl~G~kvvkid~~-d--~~V~Ln---DG~--~I~YdkcLIATG~~Pk~l~ 315 (659)
T KOG1346|consen 269 NGGVAVLRGRKVVKIDEE-D--KKVILN---DGT--TIGYDKCLIATGVRPKKLQ 315 (659)
T ss_pred cCceEEEeccceEEeecc-c--CeEEec---CCc--EeehhheeeecCcCcccch
Confidence 458888 99999999764 2 346664 898 8999999999999997654
No 472
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=92.77 E-value=0.12 Score=56.31 Aligned_cols=37 Identities=8% Similarity=-0.115 Sum_probs=32.6
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF 125 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~ 125 (535)
..+|+|||+| +|+.+|+.+...+.+|+|+||.+..+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 3589999999 999999999999999999999886543
No 473
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.73 E-value=0.33 Score=49.73 Aligned_cols=80 Identities=20% Similarity=0.161 Sum_probs=52.1
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-C--------cCCccCcHHHHHHHHHhhhcCCeEEcceEEEEEEEeCCCc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-R--------RLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGM 313 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~--------~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~~~~ 313 (535)
++.|+|.|++|+-.|..|++.|.+|+.++- + ...|-+++.+.+.+++... .++
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~------------------~gR 63 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLA------------------SGR 63 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccc------------------cCc
Confidence 689999999999999999999999999975 2 1234445554444433221 122
Q ss_pred EEEEEecCCCCCceEEEcCEEEEccCCCCCC
Q psy14461 314 KGVRGFHPESKEPFADVFKTVVNAMEKKFDF 344 (535)
Q Consensus 314 ~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~ 344 (535)
+..+. |-+.-.-.+|.+++|+|..|..
T Consensus 64 l~fTt----d~~~a~~~adv~fIavgTP~~~ 90 (414)
T COG1004 64 LRFTT----DYEEAVKDADVVFIAVGTPPDE 90 (414)
T ss_pred EEEEc----CHHHHHhcCCEEEEEcCCCCCC
Confidence 22222 2221134788999999977764
No 474
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=92.69 E-value=0.1 Score=57.40 Aligned_cols=33 Identities=6% Similarity=-0.071 Sum_probs=30.3
Q ss_pred EEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 90 YLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
||+|||+|.+|+.+|+.+...+.+|+|+||...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 579999999999999999888999999999874
No 475
>PLN02985 squalene monooxygenase
Probab=92.68 E-value=0.12 Score=56.03 Aligned_cols=35 Identities=14% Similarity=-0.043 Sum_probs=31.6
Q ss_pred eEEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461 87 AVLYLDRIGDEGILLEEELKRQTNQRRDELQERGS 121 (535)
Q Consensus 87 ~~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~ 121 (535)
..++|+|||+|++|+++|+.+...+.+|+|+|+..
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 34689999999999999998888899999999975
No 476
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=92.64 E-value=0.14 Score=53.55 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHhC--CCcEEEEEc-CcC
Q psy14461 243 KTLVLGGSLMAVEIAATLNFL--GVPVTLVYS-RRL 275 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~-~~~ 275 (535)
+|+|||||.+|+-+|..|+++ |.+|+++++ +.+
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~ 39 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP 39 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence 699999999999999999999 999999998 533
No 477
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=92.64 E-value=0.14 Score=52.80 Aligned_cols=30 Identities=17% Similarity=0.343 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
+|+|||||.+|+-+|..|++.|.+|+++++
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~ 31 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIER 31 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 589999999999999999999999999987
No 478
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.64 E-value=0.11 Score=57.48 Aligned_cols=34 Identities=9% Similarity=0.005 Sum_probs=30.9
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
.||+|||+|.||+.||+.....+.+|+|+||...
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 5889999999999999998888899999999753
No 479
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=92.60 E-value=0.14 Score=53.91 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
+|+|||||.+|+-+|..|++.|.+|+|+++
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~ 31 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDR 31 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 599999999999999999999999999998
No 480
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.60 E-value=0.11 Score=57.33 Aligned_cols=34 Identities=12% Similarity=-0.119 Sum_probs=31.0
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
.||+|||+|.||+.+|+.....+.+|+|+||...
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~ 37 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPV 37 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 3789999999999999999888999999999874
No 481
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.57 E-value=0.12 Score=57.61 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=31.8
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
..+|+|||+|.||+.||+.+...+.+|+|+||...
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 36899999999999999999888999999999864
No 482
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=92.55 E-value=0.13 Score=57.21 Aligned_cols=36 Identities=11% Similarity=-0.077 Sum_probs=32.1
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
..||+|||+|.||+.||+.....+.+|+|+||....
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~ 64 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT 64 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence 368999999999999999998888999999998753
No 483
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=92.52 E-value=0.13 Score=55.63 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=29.9
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461 244 TLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL 275 (535)
Q Consensus 244 vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~ 275 (535)
|+|||+|..|+-+|..|++.|.+|+|+++ +.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~ 33 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP 33 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 68999999999999999999999999998 664
No 484
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=92.50 E-value=0.14 Score=56.27 Aligned_cols=33 Identities=12% Similarity=-0.020 Sum_probs=31.1
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCC
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGS 121 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~ 121 (535)
.||+|||+|.+|+.+|+.....+.+|+|+||.+
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 578999999999999999988999999999988
No 485
>PRK07804 L-aspartate oxidase; Provisional
Probab=92.49 E-value=0.12 Score=56.55 Aligned_cols=36 Identities=14% Similarity=0.031 Sum_probs=32.2
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
..||+|||+|.||+.+|+.....+.+|+|+||....
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 368999999999999999998888999999998754
No 486
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.48 E-value=0.12 Score=56.89 Aligned_cols=34 Identities=9% Similarity=-0.166 Sum_probs=31.1
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
.||+|||+|.||+.||+.....+.+|+|+||...
T Consensus 6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~ 39 (566)
T PRK06452 6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP 39 (566)
T ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 5789999999999999999888899999999863
No 487
>PRK12839 hypothetical protein; Provisional
Probab=92.45 E-value=1.8 Score=47.66 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcCCccCc-----------------------------------------
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFD----------------------------------------- 280 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~l~~~~----------------------------------------- 280 (535)
.|+|||+|..|+-+|..+++.|.+|.++++ +.+.....
T Consensus 10 dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 89 (572)
T PRK12839 10 DVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWTPGNSLARADGVVEDKEEPRTYLEHRLGENYDAD 89 (572)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccCCeeecCCchhhhhccCcCchhhHHHHHHHHhCCCCCHH
Q ss_pred ---------HHHHHHHHHhh------------------------------------------------------------
Q psy14461 281 ---------QEMVRILLSSL------------------------------------------------------------ 291 (535)
Q Consensus 281 ---------~~~~~~~~~~l------------------------------------------------------------ 291 (535)
++..+.+++..
T Consensus 90 ~~~~~~~~s~e~i~wL~~~~~v~f~~~~~~~d~~~~~~~~~~~gr~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~ 169 (572)
T PRK12839 90 KVDALLDGAPEMVDFFEKKTALQFVPGAKIADIYGDLPGAGTGHRSVGPKPVNLRKLGPDVAALLRHQLYETSFLGMGIM 169 (572)
T ss_pred HHHHHHHhCHHHHHHHHhCCceEEEECCCCCCCCCCCCCCCCCCceecCCCCChhhcChHHHHhcCCCcccccccccccc
Q ss_pred -------------------------------------------------------hcCCeEE-cceEEEEEEEeCCCcEE
Q psy14461 292 -------------------------------------------------------TKAGVSI-QCCVIEKVISSFDGMKG 315 (535)
Q Consensus 292 -------------------------------------------------------~~~gV~i-~~~~v~~i~~~~~~~~~ 315 (535)
++.|+++ .++.++++..++++++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~ 249 (572)
T PRK12839 170 AGPDLQAFLHATQDPKGFVHAARRVIVHMWDLATHRRGMQLVNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVT 249 (572)
T ss_pred cHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEE
Q ss_pred EEEecCCCCCceEEEcCEEEEccC
Q psy14461 316 VRGFHPESKEPFADVFKTVVNAME 339 (535)
Q Consensus 316 v~~~~~~~G~~~~~~~D~vi~a~G 339 (535)
=......+|+.....++.||+|+|
T Consensus 250 GV~~~~~~g~~~i~aak~VVLAtG 273 (572)
T PRK12839 250 GVRVQGPDGAVTVEATRGVVLATG 273 (572)
T ss_pred EEEEEeCCCcEEEEeCCEEEEcCC
No 488
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=92.44 E-value=0.14 Score=55.64 Aligned_cols=34 Identities=15% Similarity=-0.176 Sum_probs=31.8
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
++|+|||+|..|+.+|+.+...+.+|+|+|+++.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 6899999999999999999999999999999864
No 489
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=92.43 E-value=0.14 Score=53.64 Aligned_cols=34 Identities=18% Similarity=-0.042 Sum_probs=30.5
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
.+|+|||+|.+|+.+|+.+...+.+|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 3689999999999999999999999999997653
No 490
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=92.38 E-value=0.17 Score=54.09 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHhC----CCcEEEEEc-CcC
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFL----GVPVTLVYS-RRL 275 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~-~~~ 275 (535)
++|+|||||.+|+-+|..|++. |.+|+|+++ +++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV 41 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence 5799999999999999999998 999999998 655
No 491
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=92.30 E-value=0.14 Score=56.53 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=33.1
Q ss_pred EEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcccc
Q psy14461 89 LYLDRIGDEGILLEEELKRQTNQRRDELQERGSHLSF 125 (535)
Q Consensus 89 ~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~~~ 125 (535)
.+|+|||+|.+|+.+|+.....+.+|+|+||....++
T Consensus 12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 5789999999999999999899999999999986543
No 492
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.28 E-value=0.19 Score=47.35 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=30.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
..++|+|||||.+|...|..|.+.|.+|+++.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 468999999999999999999999999999974
No 493
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=92.27 E-value=0.18 Score=52.42 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=30.1
Q ss_pred CCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 241 ~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
..+|+|||||.+|+-+|..|++.|.+|+++++
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~ 35 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEA 35 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEec
Confidence 46899999999999999999999999999986
No 494
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.26 E-value=0.19 Score=47.47 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=30.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHhCCCcEEEEEc
Q psy14461 240 WPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS 272 (535)
Q Consensus 240 ~~k~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 272 (535)
.+++|+|||||.+|..-+..|.+.|++||++.+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 358999999999999999999999999999975
No 495
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=92.24 E-value=0.2 Score=50.04 Aligned_cols=64 Identities=16% Similarity=0.078 Sum_probs=41.5
Q ss_pred HHHHHHHhhhcCCeEE-cceEEEEEEEeC-CCcE-EEEEecCCCCC--ceEEEcCEEEEccCCCCCCCCC
Q psy14461 283 MVRILLSSLTKAGVSI-QCCVIEKVISSF-DGMK-GVRGFHPESKE--PFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 283 ~~~~~~~~l~~~gV~i-~~~~v~~i~~~~-~~~~-~v~~~~~~~G~--~~~~~~D~vi~a~G~~p~~~~l 347 (535)
....+...++..|+++ +++.|++|..+. +++. .|++.+. ++. ...+.++.||+|.|.--...+|
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~-~~~~~~~~~~ak~VIlaAGai~Tp~LL 263 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDN-DGGVQRRIVAAKEVILAAGAIGTPRLL 263 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEET-TTSEEEEEEEEEEEEE-SHHHHHHHHH
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeec-CCcceeeeccceeEEeccCCCCChhhh
Confidence 3455666666669999 999999995431 3333 4666542 333 3577899999999965444443
No 496
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=92.23 E-value=0.18 Score=53.76 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHhCCCcEEEEEc-CcC
Q psy14461 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRL 275 (535)
Q Consensus 243 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~-~~~ 275 (535)
+|+|||+|..|+-+|..|++.|.+|+++++ +++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~ 34 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVL 34 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 589999999999999999999999999998 654
No 497
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=92.22 E-value=0.12 Score=56.58 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=32.3
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCcc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSHL 123 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~~ 123 (535)
..+|+|||+|++|+.+|+.+...+.+|+|||+.+..
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 467899999999999999998899999999998743
No 498
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=92.16 E-value=0.14 Score=56.67 Aligned_cols=33 Identities=12% Similarity=-0.066 Sum_probs=29.2
Q ss_pred EEEeeCCccHHHHHHHHHh----hCCCeEEEEecCCc
Q psy14461 90 YLDRIGDEGILLEEELKRQ----TNQRRDELQERGSH 122 (535)
Q Consensus 90 ~v~iiG~G~aG~~~al~~~----~~~~~V~lie~~~~ 122 (535)
+|+|||+|.||+.||+... ..+.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 5799999999999999886 56789999999874
No 499
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.15 E-value=0.14 Score=56.83 Aligned_cols=35 Identities=11% Similarity=-0.009 Sum_probs=31.4
Q ss_pred EEEEEeeCCccHHHHHHHHHhhCCCeEEEEecCCc
Q psy14461 88 VLYLDRIGDEGILLEEELKRQTNQRRDELQERGSH 122 (535)
Q Consensus 88 ~~~v~iiG~G~aG~~~al~~~~~~~~V~lie~~~~ 122 (535)
..||+|||+|.||+.||+.....+.+|+|+||...
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~ 46 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP 46 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 36899999999999999999888899999999863
No 500
>KOG3851|consensus
Probab=92.14 E-value=0.09 Score=51.93 Aligned_cols=98 Identities=20% Similarity=0.211 Sum_probs=59.1
Q ss_pred CcEEEECCChHHHHHHHHHHhC-CC-cEEEEEc--CcCC-ccC---cHHHHHHHH-----HhhhcCCeEEcceEEEEEEE
Q psy14461 242 GKTLVLGGSLMAVEIAATLNFL-GV-PVTLVYS--RRLL-KHF---DQEMVRILL-----SSLTKAGVSIQCCVIEKVIS 308 (535)
Q Consensus 242 k~vvViGgG~~g~e~A~~l~~~-g~-~Vtlv~~--~~~l-~~~---~~~~~~~~~-----~~l~~~gV~i~~~~v~~i~~ 308 (535)
-+|+|||||.-|+-+|.-+.+. |. +|-|+++ .+.. |.+ ...+...-. ..+--.|.......|+++++
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~P 119 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFNP 119 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhcCC
Confidence 4799999999999999888765 54 8889987 3332 221 111110000 01111122222245666665
Q ss_pred eCCCcEEEEEecCCCCCceEEEcCEEEEccCCCCCCCCC
Q psy14461 309 SFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347 (535)
Q Consensus 309 ~~~~~~~v~~~~~~~G~~~~~~~D~vi~a~G~~p~~~~l 347 (535)
++ + +|.+ .+|+ +|.+|.+++|+|..-+-+.+
T Consensus 120 ~~-N--~v~t---~gg~--eIsYdylviA~Giql~y~~I 150 (446)
T KOG3851|consen 120 DK-N--TVVT---RGGE--EISYDYLVIAMGIQLDYGKI 150 (446)
T ss_pred Cc-C--eEEc---cCCc--EEeeeeEeeeeeceeccchh
Confidence 42 2 3555 3787 89999999999988776554
Done!