RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14461
(535 letters)
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 180 bits (457), Expect = 2e-50
Identities = 115/391 (29%), Positives = 187/391 (47%), Gaps = 35/391 (8%)
Query: 156 NWNAATKLIKRFCIRAKNDSMR-ELKALGIDIVRTAAAFTNPHTIKLSNRS-----VTGF 209
+W + ++ I + N R L+ + A F + H IK +N+ +
Sbjct: 87 DWKRLVEAVQNH-IGSLNWGYRVALREKKVKYENAYAEFVDKHRIKATNKKGKEKIYSAE 145
Query: 210 NFLLAV-ERRCLPE-PRNSAL-ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVP 266
FL+A ER P P L I++DDLF L PGKTLV+G S +A+E A L +G+
Sbjct: 146 RFLIATGERPRYPGIPGAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLD 205
Query: 267 VTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEP 326
VT++ LL+ FDQ+ + + + GV + + + + V +S
Sbjct: 206 VTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVLVE--FTDSTNG 263
Query: 327 FADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS-YVVCNEKDQTSVGNIFAVGGIVHGK 385
+ + TV+ A+ + LNL ++GV I KK+ + +E++QT+V I+AVG I+ K
Sbjct: 264 IEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDK 323
Query: 386 PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGL 445
P +A + RL+ +RL+ + DY +P V +E+G G+SEE A + +G + +
Sbjct: 324 PELTPVAIQAGRLLAQRLFKGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENV 383
Query: 446 VIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKG-GERVLG 504
++ S + L+ +P C + KLVC K ERV+G
Sbjct: 384 EVFHSYF----WPLEWTIPSRDNHNKC-----------------YAKLVCNKKENERVVG 422
Query: 505 IHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
HV+G N + G++ ALR LTK +LD T
Sbjct: 423 FHVVGPNAGEVTQGFAAALRCGLTKKDLDNT 453
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 174 bits (445), Expect = 6e-49
Identities = 104/359 (28%), Positives = 173/359 (48%), Gaps = 36/359 (10%)
Query: 183 GIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV-ERRCLPE-PRNSALISADDLFRLGAW 240
G+D++ A F + HT++++ T + L+A R +P+ P I++D F L
Sbjct: 107 GVDLIEGFARFVDAHTVEVNGERYTADHILIATGGRPSIPDIPGAEYGITSDGFFALEEL 166
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR-RLLKHFDQEMVRILLSSLTKAGVSIQ 299
P + V+G +AVE A LN LG L L+ FD ++ L+ + K G+ +
Sbjct: 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLH 226
Query: 300 C-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKK 358
V + V + DG + E+ D ++ A+ ++ + L L + GV + +
Sbjct: 227 TNAVPKAVEKNADGSLTLTLEDGETLT--VD---CLIWAIGREPNTDGLGLENAGVKLNE 281
Query: 359 KSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY-GMQDQLMDYSFLP 417
K Y++ +E T+V I+AVG V G+ +A + R + ERL+ D+ +DYS +P
Sbjct: 282 KGYIIVDEYQNTNVPGIYAVGD-VTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIP 340
Query: 418 VVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPLLPENFVKLVCLKGG 476
VV GTVG++EE A + YG D + +Y+SS+ P + L G
Sbjct: 341 TVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTAL----------------TG 384
Query: 477 ERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
R Q +KLV + E+V+G+H IG MI G+++A++ TKA+ D T
Sbjct: 385 HR--------QPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNT 435
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 160 bits (407), Expect = 2e-43
Identities = 109/375 (29%), Positives = 179/375 (47%), Gaps = 24/375 (6%)
Query: 169 IRAKNDSMRE-LKALGIDIVRTAAAFTNPHTIKLSNRS----VTGFNFLLAVE-RRCLPE 222
IR+ N S R L++ ++ + A + HT+ + S +T L+A R +PE
Sbjct: 101 IRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPE 160
Query: 223 PRNSAL---ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHF 279
A I++DD+F L PGKTL++G S + +E A LN LG VT+ L+ F
Sbjct: 161 DVPGAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGF 220
Query: 280 DQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME 339
D++ ++ + + G V+ I D V + ++F TV+ A
Sbjct: 221 DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKV-----LFSDGTTELFDTVLYATG 275
Query: 340 KKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLI 399
+K D LNL+ IGV + K + ++ D T++ NIFAVG +V G+P +A + L+
Sbjct: 276 RKPDIKGLNLNAIGVHVNKSNKIIA-PNDCTNIPNIFAVGDVVEGRPELTPVAIKAGILL 334
Query: 400 IERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL 459
RL+ ++ +DY+F+P + +E+G G S EAA YG D + Y + T +
Sbjct: 335 ARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLE--- 391
Query: 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKG-GERVLGIHVIGQNVAGMIFG 518
+ + K + E + N KLVC+K +V+G H +G N + G
Sbjct: 392 --IAAVHREKHERARKDE---YDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQG 446
Query: 519 YSLALRKFLTKAELD 533
+SLAL+ K++ D
Sbjct: 447 FSLALKLGAKKSDFD 461
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 146 bits (369), Expect = 2e-38
Identities = 97/365 (26%), Positives = 176/365 (48%), Gaps = 34/365 (9%)
Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV-ERRCLPE--PRNSALISADD 233
+ L+ +D++ A FT T++++ R T + L+A + PE P +D
Sbjct: 99 KNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGKPSFPENIPGAELGTDSDG 158
Query: 234 LFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR-RLLKHFDQEMVRILLSSLT 292
F L P + +++G +AVE+A L+ LG LV R+L+ FD + +
Sbjct: 159 FFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYE 218
Query: 293 KAGVSI-QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHH 351
K G+++ + KV + +G + H E + DV ++ A+ +K + L L +
Sbjct: 219 KEGINVHKLSKPVKVEKTVEGKLVI---HFEDGKSIDDV-DELIWAIGRKPNTKGLGLEN 274
Query: 352 IGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQ-DQL 410
+G+ + +K ++ +E T+V I+A+G +V GK +A + R + ERL+ + D
Sbjct: 275 VGIKLNEKGQIIVDEYQNTNVPGIYALGDVV-GKVELTPVAIAAGRKLSERLFNGKTDDK 333
Query: 411 MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKL 470
+DY+ +P VV GT+G++E+ A + YG + + +Y SS+ + +
Sbjct: 334 LDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPM-----------YYAM 382
Query: 471 VCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKA 530
K Q +KLVC E+V+G+H IG V M+ G+++A++ TKA
Sbjct: 383 TSEK------------QKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKA 430
Query: 531 ELDGT 535
+ D T
Sbjct: 431 DFDNT 435
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 138 bits (351), Expect = 8e-36
Identities = 95/365 (26%), Positives = 159/365 (43%), Gaps = 37/365 (10%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKL---SNRSVTGFNFLLAVERR----CLPEPRNSALISA 231
LK G+D++R A F +PHT+++ ++T N ++A R P + ++ +
Sbjct: 104 LKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDS 163
Query: 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR-RLLKHFDQEMVRILLSS 290
D L P +++GG + +E A+ LG VT+V R+L D E+ + L
Sbjct: 164 SDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQ 223
Query: 291 LTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLH 350
L K GV I + D V E AD V+ A+ +K + L L
Sbjct: 224 LEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADA---VLVAIGRKPNTDGLGLE 280
Query: 351 HIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQL 410
+ GV++ + ++ +++ T+V I+A+G ++ G P A +A R+ E + G +
Sbjct: 281 NAGVELDDRGFIKVDDQMTTNVPGIYAIGDVI-GGPMLAHVAMAEGRIAAENIAGGKRTP 339
Query: 411 MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKL 470
+DY +P VV D E +VG++EE A + +P N
Sbjct: 340 IDYRLIPSVVFTDPEIASVGLTEEEAKEAGID----YKVGKFPFAAN------------- 382
Query: 471 VCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKA 530
G +G G FVKLV K R+LG H++G + +I +LA+ T
Sbjct: 383 ----GRAITMG-ETDG---FVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAE 434
Query: 531 ELDGT 535
+L T
Sbjct: 435 DLALT 439
>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria [Energy metabolism,
Electron transport].
Length = 446
Score = 124 bits (314), Expect = 5e-31
Identities = 102/382 (26%), Positives = 161/382 (42%), Gaps = 47/382 (12%)
Query: 169 IRAKNDSMRELKAL--------GIDIVRTAAAFTNPHTIKL--SNRSVTGFNFLLAVERR 218
+ AK+ + L L G +++ A P+T+++ S ++ T L+AV R
Sbjct: 82 LAAKDQEIARLSGLYRKGLANAGAELLDGRAELVGPNTVEVLASGKTYTAEKILIAVGGR 141
Query: 219 CL-PE-PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRL 275
P P + I++++ F L P L+ GG +AVE A LGV TL+Y + +
Sbjct: 142 PPKPALPGHELGITSNEAFHLPTLPKSILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEI 201
Query: 276 LKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPF-ADVFKTV 334
L+ FD +M R L ++L + G+ I IS D G E ADV V
Sbjct: 202 LRGFDDDMRRGLAAALEERGIRILPEDSITSISKDD--DGRLKATLSKHEEIVADV---V 256
Query: 335 VNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAI 394
+ A + + L L GV + + +E +TS +I+AVG V + N +A
Sbjct: 257 LFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTSTPSIYAVGD-VTDRINLTPVAIH 315
Query: 395 SARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPT 454
A E +G D+ + V GTVG++EE A + +G D V P
Sbjct: 316 EATCFAETEFGNNPTSFDHDLIATAVFSQPPIGTVGLTEEEARRKFG-DIEVYRAEFRPM 374
Query: 455 FDNLLDPLLPENFVKLVCLKGG-ERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVA 513
G E+ L +KLV ++VLG H++G + A
Sbjct: 375 K---------------ATFSGRQEKTL----------MKLVVDAKDDKVLGAHMVGPDAA 409
Query: 514 GMIFGYSLALRKFLTKAELDGT 535
+I G ++AL+ TK + D T
Sbjct: 410 EIIQGLAIALKMGATKDDFDST 431
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH [Cellular processes,
Detoxification].
Length = 463
Score = 110 bits (277), Expect = 6e-26
Identities = 86/362 (23%), Positives = 152/362 (41%), Gaps = 37/362 (10%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKLS-NRSVTGFN-FLLAVERRC----LPEPRNSALISAD 232
L + G+D +R A F +P T+K+ R V G FL+A R +P + + ++++
Sbjct: 98 LSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSE 157
Query: 233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILLSSL 291
+ L P V+GG + VE+A LG VT++ S RLL + E+ + +L
Sbjct: 158 EALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEAL 217
Query: 292 TKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHH 351
+ G+ + K +S G K + + + + +V A ++ + L L
Sbjct: 218 AEEGIEVVTSAQVKAVSVRGGGKIIT-VEKPGGQGEVEADELLV-ATGRRPNTDGLGLEK 275
Query: 352 IGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLM 411
GV + ++ ++ +E +TS I+A G + G +AA + E G + +
Sbjct: 276 AGVKLDERGGILVDETLRTSNPGIYAAGDVT-GGLQLEYVAAKEGVVAAENALGGANAKL 334
Query: 412 DYSFLPVVVRGDVEFGTVGMSE-EAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKL 470
D +P VV D +VG++E EA D + ++ P
Sbjct: 335 DLLVIPRVVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPR---------------- 378
Query: 471 VCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKA 530
R+ F+KLV G +VLG+ V+ A +I +LA+R +T
Sbjct: 379 ------ARINR----DTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVD 428
Query: 531 EL 532
+L
Sbjct: 429 DL 430
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 105 bits (263), Expect = 5e-24
Identities = 87/370 (23%), Positives = 161/370 (43%), Gaps = 64/370 (17%)
Query: 204 RSVTGFNFLLAVERRCLPEPRN----SALISADDLFRLGAWPGKTLVLGGSLMAVEIAAT 259
+ + G N L+AV + P + IS+DD F++ + + G +AVE+
Sbjct: 199 QVIEGKNILIAVGNK--PIFPDVKGKEFTISSDDFFKIKE-AKRIGIAGSGYIAVELINV 255
Query: 260 LNFLGVPVTLVYSR-RLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRG 318
+N LG + RLL+ FD+ ++ L + + K ++I + I K +
Sbjct: 256 VNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEK-VKEKNLTI 314
Query: 319 FHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAV 378
+ + ++ F V+ + + + LNL + K Y+ ++ +TSV +I+AV
Sbjct: 315 YLSDGRKYEH--FDYVIYCVGRSPNTEDLNLKAL-NIKTPKGYIKVDDNQRTSVKHIYAV 371
Query: 379 GGIVHGKPNNA--------------------------------SMAAISA-RLIIERLYG 405
G K N + AI+A RL+ +RL+G
Sbjct: 372 GDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431
Query: 406 MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPE 465
+ +Y +P V+ GT+G+SE+ A +YG + + IY+S F NL
Sbjct: 432 PFSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESR---FTNL------- 481
Query: 466 NFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRK 525
F + + ++ + ++KLVC+ E + G+H++G N ++ G+++AL+
Sbjct: 482 -FFSVYDMDPAQK--------EKTYLKLVCVGKEELIKGLHIVGLNADEILQGFAVALKM 532
Query: 526 FLTKAELDGT 535
TKA+ D T
Sbjct: 533 NATKADFDET 542
>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 99.2 bits (247), Expect = 6e-22
Identities = 93/361 (25%), Positives = 166/361 (45%), Gaps = 35/361 (9%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVE-RRCLPE-PRNSALISADDLFR 236
LK G+ ++ +PHT+ + + T N L+AV R +P+ P I +D
Sbjct: 188 LKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRPFIPDIPGIEHAIDSDAALD 247
Query: 237 LGAWPGKTLVLGGSLMAVEIAATLNFLGVPV-TLVYSRRLLKHFDQEMVRILLSSLTKAG 295
L + P K ++GG +A+E A N L V + +++L+ FD+E+ + ++ G
Sbjct: 248 LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRG 307
Query: 296 VSIQCC-VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGV 354
+ + +I S DG ++ +K F V+ A +K + L L +GV
Sbjct: 308 IEFHTEESPQAIIKSADGSLSLK----TNKGTVEG-FSHVMFATGRKPNTKNLGLEEVGV 362
Query: 355 DIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYS 414
+ K + +E +TSV +I+AVG V + N +A + + + L+G + DY
Sbjct: 363 KMDKNGAIEVDEYSRTSVPSIWAVGD-VTDRINLTPVALMEGGALAKTLFGNEPTKPDYR 421
Query: 415 FLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLK 474
+P V G VG++EE A + YG + ++ +++ L L F+KL
Sbjct: 422 AVPSAVFSQPPIGQVGLTEEQAIEEYG--DVDVFTANFRPLKATLSGLPDRVFMKL---- 475
Query: 475 GGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDG 534
+VC K +VLG+H+ G++ +I G+++A++ LTKA+ D
Sbjct: 476 ------------------IVCAKTN-KVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDA 516
Query: 535 T 535
T
Sbjct: 517 T 517
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the E3
component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to have
distinct functions (ferric leghemoglobin reductase and
NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 96.6 bits (241), Expect = 2e-21
Identities = 89/366 (24%), Positives = 162/366 (44%), Gaps = 43/366 (11%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKLSN----RSVTGFNFLLAV--ERRCLP---EPRNSALI 229
LK + +++ A F +P T+ ++ ++ N ++A R LP + +I
Sbjct: 99 LKKNKVTVIKGEAKFLDPGTVSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVI 158
Query: 230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILL 288
++ L P +++GG ++ VE A+ LG VT++ R+L D E+ ++L
Sbjct: 159 TSTGALNLEEVPESLVIIGGGVIGVEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVLQ 218
Query: 289 SSLTKAGVSIQCCVIE--KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346
+L K GV I + KV + V + + E + V+ A+ +K +
Sbjct: 219 KALKKKGVKI----LTNTKVTAVEKNDDQVT-YENKGGETETLTGEKVLVAVGRKPNTEG 273
Query: 347 LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGM 406
L L +GV++ ++ +V +E +T+V I+A+G ++ G P A +A+ + E + G
Sbjct: 274 LGLEKLGVELDERGRIVVDEYMRTNVPGIYAIGDVI-GGPMLAHVASHEGIVAAENIAGK 332
Query: 407 QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPEN 466
+ +DY +P V+ D E +VG++EE A G + +P N
Sbjct: 333 EPAHIDYDAVPSVIYTDPEVASVGLTEEQAK----EAGYDVKIGKFPFAAN--------- 379
Query: 467 FVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKF 526
G LG + FVK++ K +LG H+IG + +I +LA+
Sbjct: 380 --------GKALALG----ETDGFVKIIADKKTGEILGAHIIGPHATELISEAALAMELE 427
Query: 527 LTKAEL 532
T EL
Sbjct: 428 GTVEEL 433
>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 93.7 bits (233), Expect = 2e-20
Identities = 91/376 (24%), Positives = 160/376 (42%), Gaps = 40/376 (10%)
Query: 169 IRAKNDSMRELKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAVERRCLPE- 222
+R R L G+ + P+ +++ + T + L+A R
Sbjct: 124 LRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPN 183
Query: 223 -PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRL-LKHFD 280
P I++D+ L P + +VLGG +AVE A+ +G V L + + L L+ FD
Sbjct: 184 IPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFD 243
Query: 281 QEMVRILLSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME 339
EM ++ +L G+++ + ++ + G+K V H E E ADV V+ A
Sbjct: 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIK-VITDHGE--EFVADV---VLFATG 297
Query: 340 KKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLI 399
+ + LNL +GV++ K V +E +T++ +I+A+G V + N +A +
Sbjct: 298 RAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGD-VTNRINLTPVALMEGTCF 356
Query: 400 IERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL 459
+ ++G Q DY + V VG+SEE A + D LV + SS+ N
Sbjct: 357 AKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDILV-FTSSFNPMKNT- 414
Query: 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGY 519
I + +KL+ ++VLG + G + ++ G
Sbjct: 415 ----------------------ISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGI 452
Query: 520 SLALRKFLTKAELDGT 535
++AL+ TKA+ D T
Sbjct: 453 AVALKCGATKAQFDST 468
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 91.0 bits (227), Expect = 2e-19
Identities = 81/323 (25%), Positives = 137/323 (42%), Gaps = 26/323 (8%)
Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRC--LPEPRNSA---LISA 231
K ID ++ A F +P+T++++ + N ++A R +P L+++
Sbjct: 100 GLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTS 159
Query: 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSS 290
DD F L P V+GG ++ +E+ L+ LGV VT+ R+L D E+ +
Sbjct: 160 DDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKI 219
Query: 291 LTKAGVSIQCCVIE--KVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALN 348
L+K + + KV S + + V+ A ++ + L
Sbjct: 220 LSK-----EFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLG 274
Query: 349 LHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQD 408
L + G+++ ++ V +E QTSV I+A G + GKP AA R+ E G
Sbjct: 275 LENTGIELDERGRPVVDEHTQTSVPGIYAAGDVN-GKPPLLHEAADEGRIAAENAAGDVA 333
Query: 409 QLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDP-----LL 463
+ Y +P VV D + +VG++EE A G+ P F+
Sbjct: 334 GGVRYHPIPSVVFTDPQIASVGLTEEELK----AAGIDYVVGEVP-FEA--QGRARVMGK 386
Query: 464 PENFVKLVCLKGGERVLGIHVIG 486
+ FVK+ K R+LG H+IG
Sbjct: 387 NDGFVKVYADKKTGRLLGAHIIG 409
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 87.5 bits (218), Expect = 2e-18
Identities = 91/371 (24%), Positives = 149/371 (40%), Gaps = 75/371 (20%)
Query: 179 LKALGIDIVRTAAAFTNPHTIK----LSNRSVTGFNFLLAV--ERRCLP--EPRNSALIS 230
LK +DI+R A +P+T++ ++ T N +LA R LP E + +
Sbjct: 102 LKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT 161
Query: 231 ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYS-RRLLKHFDQEMVRILLS 289
+D+ L P +V+GG + VE A+ LG VT+V + R+L D+E+ ++
Sbjct: 162 SDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAER 221
Query: 290 SLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF----- 344
+L K G+ I+ K GV E E+ +
Sbjct: 222 ALKKRGIKIKTGA--KAKKVEQTDDGVT-VTLEDGGK------------EETLEADYVLV 266
Query: 345 --------AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISA 396
L L +GV + ++ +E+ +T+V NI+A+G IV G P A A+
Sbjct: 267 AVGRRPNTENLGLEELGVKTDR-GFIEVDEQLRTNVPNIYAIGDIV-GGPMLAHKASAEG 324
Query: 397 RLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFD 456
+ E + G +DY +P V E +VG++E A + + + K +P
Sbjct: 325 IIAAEAIAG-NPHPIDYRGIPAVTYTHPEVASVGLTEAKAKE--EGFDVKVVK--FPFAG 379
Query: 457 N-----LLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQN 511
N L + + FVKL+ K K GE VLG H++G
Sbjct: 380 NGKALALGE---TDGFVKLIFDK----------------------KDGE-VLGAHMVGAR 413
Query: 512 VAGMIFGYSLA 522
+ +I LA
Sbjct: 414 ASELIQEAQLA 424
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 84.5 bits (210), Expect = 2e-17
Identities = 56/275 (20%), Positives = 113/275 (41%), Gaps = 9/275 (3%)
Query: 170 RAKNDSMRELKAL-GIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRC----LPEPR 224
R+++ S + L+ L G+D+ R A F +P+T+++ ++ + R +P
Sbjct: 95 RSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGARAAIPPIPGLD 154
Query: 225 NSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEM 283
++ + +F L P +++GG + +E A G VT++ RLL D+++
Sbjct: 155 EVGYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDV 214
Query: 284 VRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
+ L + G+ ++ + V G P +V A+ + +
Sbjct: 215 AAAVREILEREGIDVRLNAECIRVERDGDGIAV-GLDCNGGAPEITGSHILV-AVGRVPN 272
Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
L L GV+ + Y+ +++ +T+ I+A G +G+ A AR++ L
Sbjct: 273 TDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGD-CNGRGAFTHTAYNDARIVAANL 331
Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAK 438
+ + +P D VGM+E A K
Sbjct: 332 LDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARK 366
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 82.6 bits (205), Expect = 7e-17
Identities = 72/298 (24%), Positives = 135/298 (45%), Gaps = 33/298 (11%)
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRIL 287
IS+D+ L P +++GG ++ +E A+ L GV VT+V + R+L D E+ + +
Sbjct: 168 ISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEV 227
Query: 288 LSSLTKAGVSIQ--CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA 345
L K GV + V+ + G+ V + E K AD K +V ++ ++ +
Sbjct: 228 ARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEAD--KVLV-SVGRRPNTE 284
Query: 346 ALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405
+ L + +D++ ++ ++ QT +I+A+G ++ G+P A +A + E + G
Sbjct: 285 GIGLENTDIDVEGG-FIQIDDFCQTKERHIYAIGDVI-GEPQLAHVAMAEGEMAAEHIAG 342
Query: 406 MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPE 465
+ + DY+ +P D E +VG++EE A G + +P N
Sbjct: 343 KKPRPFDYAAIPACCYTDPEVASVGLTEEEAK----EAGYDVKVGKFPFAAN-------- 390
Query: 466 NFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLAL 523
G G + FVK+V + +LG+ +G +V +I ++LAL
Sbjct: 391 ---------GKALTYG----ESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALAL 435
>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase.
Trypanothione, a glutathione-modified derivative of
spermidine, is (in its reduced form) an important
antioxidant found in trypanosomatids (Crithidia,
Leishmania, Trypanosoma). This model describes
trypanothione reductase, a possible antitrypanosomal
drug target closely related to some forms of glutathione
reductase.
Length = 486
Score = 76.2 bits (187), Expect = 1e-14
Identities = 76/294 (25%), Positives = 135/294 (45%), Gaps = 24/294 (8%)
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNF---LGVPVTLVYSRRL-LKHFDQEMV 284
IS+++ F L P + L +GG ++VE A N G VTL Y + L+ FD +
Sbjct: 175 ISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLR 234
Query: 285 RILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
+ L L G++I KV + DG K V K DV + + +
Sbjct: 235 KELTKQLRANGINIMTNENPAKVTLNADGSKHVT--FESGKTLDVDVVMMAIGRVPRTQT 292
Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
L L +GV++ KK + +E +T+V NI+A+G + + +A ++ +
Sbjct: 293 ---LQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVT-DRVMLTPVAINEGAAFVDTV 348
Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPL 462
+G + + D++ + V GT G+ EE AAK + + + +Y+SS+ P N+
Sbjct: 349 FGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKF--EKVAVYESSFTPLMHNISGSK 406
Query: 463 LPENFVKLVCLKGGERVLGIHVIGQNN--FVKLV--CLKGGERV------LGIH 506
+ K+V VLG+H++G ++ ++ V CLK ++ +G+H
Sbjct: 407 YKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVH 460
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 74.2 bits (183), Expect = 4e-14
Identities = 83/334 (24%), Positives = 135/334 (40%), Gaps = 50/334 (14%)
Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSNRSV-TGFNFLLAVERRCL--PEPRNSALI--SA 231
R ID+ R A F P T++ + T ++A R + P +S + ++
Sbjct: 97 RGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTS 156
Query: 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSS 290
D + RL P +++GG +A E A + LGV VT+V S RLL+H D + +
Sbjct: 157 DTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDD----ISER 212
Query: 291 LTK-AGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL 349
T+ A + V+ GV + ADV ++ A + + L+
Sbjct: 213 FTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADV---LLVATGRVPNGDLLDA 269
Query: 350 HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPN------NASMAAISARLIIERL 403
GVD+ + VV +E +TS +FA+G + P N + L L
Sbjct: 270 AAAGVDVDEDGRVVVDEYQRTSAEGVFALGDV--SSPYQLKHVANHEARVVQHNL----L 323
Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSE-EAAAKVYGADGLVIYKSSY---------- 452
+ D+ F+P V + +VG++E EA A G D + + +Y
Sbjct: 324 HPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAA--GLD-ITVKVQNYGDVAYGWAME 380
Query: 453 PTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIG 486
T FVKL+ + R+LG H+IG
Sbjct: 381 DT----------TGFVKLIADRDTGRLLGAHIIG 404
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 71.9 bits (177), Expect = 3e-13
Identities = 64/261 (24%), Positives = 120/261 (45%), Gaps = 20/261 (7%)
Query: 236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVT-LVYSRRLLKHFDQEMVRILLSSLTKA 294
P K V+G ++ +E+ + LG VT L L D+++ + + TK
Sbjct: 178 NFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQ 237
Query: 295 GVSIQCCVIEKVISSFDGMKGVRGFHPESK--EPFADVFKTVVNAMEKKFDFAALNLHHI 352
G+ I V K+ G KGV + ++ +V K +V ++ + + L L +
Sbjct: 238 GLDIHLGV--KIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIV-SIGRVPNTDGLGLEAV 294
Query: 353 GVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMD 412
G+ + ++ ++ ++ +T+V N++A+G +V P A A + ER+ G Q +D
Sbjct: 295 GLKLDERGFIPVDDHCRTNVPNVYAIGDVV-RGPMLAHKAEEEGVAVAERIAG-QKGHID 352
Query: 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN-----LLDPLLPENF 467
Y+ +P V+ E VG +E+ A+G+ +P N + + P+ F
Sbjct: 353 YNTIPWVIYTSPEIAWVGKTEQQLK----AEGVEYKAGKFPFMANGRALAMGE---PDGF 405
Query: 468 VKLVCLKGGERVLGIHVIGQN 488
VK++ + +LG+HVIG N
Sbjct: 406 VKIIADAKTDEILGVHVIGPN 426
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 69.7 bits (171), Expect = 3e-13
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 28/171 (16%)
Query: 228 LISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRI 286
+I +D++ L P + +V+GG + +E+AA L LG VT+V RLL D E+
Sbjct: 129 VIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLLARADDEISAA 188
Query: 287 LLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346
LL L K + + ++ V+ K V V ++ D
Sbjct: 189 LLEKLEKLLLGVTVLLVVVVVVKVGDGKVVE----------------VKLGDGEELDADV 232
Query: 347 L-----------NLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP 386
+ L GV++ ++ Y+V +E +TSV I+A G + GKP
Sbjct: 233 VLVAIGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283
>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase. Mycothiol, a
glutathione analog in Mycobacterium tuberculosis and
related species, can form a disulfide-linked dimer
called mycothione. This enzyme can reduce mycothione to
regenerate two mycothiol molecules. The enzyme shows
some sequence similarity to glutathione-disulfide
reductase, trypanothione-disulfide reductase, and
dihydrolipoamide dehydrogenase. The characterized
protein from M. tuberculosis, a homodimer, has FAD as a
cofactor, one per monomer, and uses NADPH as a
substrate.
Length = 452
Score = 67.9 bits (166), Expect = 5e-12
Identities = 77/322 (23%), Positives = 129/322 (40%), Gaps = 40/322 (12%)
Query: 184 IDIVRTAAAFTNPHTIKL-SNRSVTGFNFLLAVERRCLPEPRNSALISA--------DDL 234
ID+ A F P T++ +TG ++A R P I+ +D+
Sbjct: 107 IDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSR----PYIPPAIADSGVRYHTNEDI 162
Query: 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTK 293
RL P +++GG +A E A + LG VT+V S +LL+H D++ I
Sbjct: 163 MRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDED---ISDRFTEI 219
Query: 294 AGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG 353
A + V + GV + ADV ++ A + + L+ G
Sbjct: 220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADV---LLVATGRVPNGDLLDAEAAG 276
Query: 354 VDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQD-QLMD 412
V++ + + +E +TS ++A+G V +A AR++ L D + M
Sbjct: 277 VEVDEDGRIKVDEYGRTSARGVWALGD-VSSPYQLKHVANAEARVVKHNLLHPNDLRKMP 335
Query: 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGAD--------GLVIYKSSYPTFDNLLDPLLP 464
+ F+P V + TVG++ E A+ G D G V Y + D
Sbjct: 336 HDFVPSAVFTHPQIATVGLT-EQEAREAGHDITVKIQNYGDVAY--GWAMEDT------- 385
Query: 465 ENFVKLVCLKGGERVLGIHVIG 486
F KL+ + ++LG H+IG
Sbjct: 386 TGFCKLIADRDTGKLLGAHIIG 407
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 66.4 bits (162), Expect = 1e-11
Identities = 67/259 (25%), Positives = 118/259 (45%), Gaps = 26/259 (10%)
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVSIQ 299
P +V+G ++ +E+ + LG VT+V Y R+ D E + L +LTK G+ +
Sbjct: 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFK 233
Query: 300 CCVIEKVISSFDGMKGVR-GFHP------ESKEPFADVFKTVVNAMEKKFDFAALNLHHI 352
+ KV + G GV P E+ + AD V+ A+ ++ L L +
Sbjct: 234 --LGSKVTGATAGADGVSLTLEPAAGGAAETLQ--ADY---VLVAIGRRPYTQGLGLETV 286
Query: 353 GVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMD 412
G++ K+ ++ N+ +TSV ++ +G + G P A A A IER+ G + ++
Sbjct: 287 GLETDKRG-MLANDHHRTSVPGVWVIGDVTSG-PMLAHKAEDEAVACIERIAGKAGE-VN 343
Query: 413 YSFLPVVVRGDVEFGTVGMSEE---AAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469
Y +P V+ E TVG +EE A + Y +S ++ E F K
Sbjct: 344 YGLIPGVIYTRPEVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHE-----TEGFAK 398
Query: 470 LVCLKGGERVLGIHVIGQN 488
++ + VLG+H++G +
Sbjct: 399 ILADARTDEVLGVHMVGPS 417
>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 62.3 bits (151), Expect = 3e-10
Identities = 68/286 (23%), Positives = 114/286 (39%), Gaps = 27/286 (9%)
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQC 300
P V+G S++A EIA LG VT++ LL D + L + K G+ +
Sbjct: 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLN 247
Query: 301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS 360
++ D GF + K ++ + + + LNL +GV
Sbjct: 248 NTQASLVEHDDN-----GFVLTTGHGELRAEKLLI-STGRHANTHDLNLEAVGVTTDTSG 301
Query: 361 YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVV 420
+V N +TS +I+A G P +AA + + G L D S +P V+
Sbjct: 302 AIVVNPAMETSAPDIYAAGDCSD-LPQFVYVAAAAGSRAGINMTGGNATL-DLSAMPAVI 359
Query: 421 RGDVEFGTVGMSE-EAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERV 479
D + TVG+SE +A V+ + P L + F+KLV +G ++
Sbjct: 360 FTDPQVATVGLSEAKAHLSGIETISRVLTMENVP---RALANFETDGFIKLVAEEGTRKL 416
Query: 480 LGIHVIGQNNFVKLVCLKGGERV----LGIH--VIGQNVAGMIFGY 519
+G ++ +GGE + L IH + + +A +F Y
Sbjct: 417 IGAQILAH---------EGGELIQSAALAIHNRMTVEELADQLFPY 453
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 62.1 bits (152), Expect = 3e-10
Identities = 94/436 (21%), Positives = 166/436 (38%), Gaps = 98/436 (22%)
Query: 107 RQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKR 166
R+ R + + S+R K R + +DL + + I N ++ +
Sbjct: 56 REAVLRLIGFNQNPLYSSYRVKLR----ITFADL------LARADHVI---NKQVEVRRG 102
Query: 167 FCIRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAVERRCLP 221
R + +D+++ A F +PHT+++ ++T ++A R
Sbjct: 103 QYERNR-----------VDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSR--- 148
Query: 222 EPRNSALIS--------ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR 273
P + +D + L P ++ G ++ E A+ LGV VTL+ +R
Sbjct: 149 -PYRPPDVDFDHPRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTR 207
Query: 274 -RLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPES-KEPFADVF 331
RLL D E+ L L +GV+I+ E+V G GV H +S K+ AD
Sbjct: 208 DRLLSFLDDEISDALSYHLRDSGVTIR--HNEEVEKVEGGDDGVI-VHLKSGKKIKAD-- 262
Query: 332 KTVVNAMEKKFDFAA--------LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH 383
+A LNL + G++ + + NE QT+V +I+AVG ++
Sbjct: 263 ---------CLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVI- 312
Query: 384 GKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEA--AAKVYG 441
G P+ AS + R+ + G + +P + E +VG +E+ AAKV
Sbjct: 313 GFPSLASASMDQGRIAAQHAVGEATAHL-IEDIPTGIYTIPEISSVGKTEQELTAAKVPY 371
Query: 442 ADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNN-FVKLVCLKGGE 500
G +K L + G N +K++ +
Sbjct: 372 EVGRARFKE----------------------LARA------QIAGDNVGMLKILFHRETL 403
Query: 501 RVLGIHVIGQNVAGMI 516
+LG+H G+ +I
Sbjct: 404 EILGVHCFGERATEII 419
>gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide
oxidoreductase, dimerisation domain. This family
includes both class I and class II oxidoreductases and
also NADH oxidases and peroxidases.
Length = 110
Score = 56.4 bits (137), Expect = 6e-10
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 25/119 (21%)
Query: 417 PVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGG 476
P VV D E +VG++EE A K G + + K + L + FVKLV
Sbjct: 2 PSVVFTDPEIASVGLTEEEAKKKGGE--VKVGKFPFKANGRALAYGETKGFVKLVADAET 59
Query: 477 ERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
R+LG H++G N GE +I +LA++ T +L T
Sbjct: 60 GRILGAHIVGPN---------AGE--------------LIQEAALAIKMGATVEDLANT 95
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 60.0 bits (146), Expect = 1e-09
Identities = 71/365 (19%), Positives = 150/365 (41%), Gaps = 57/365 (15%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKLSNRS-----VTGFNFLLAVERRCL---PEPRNSALI- 229
K + +V FT +T++++ + N ++A R + P + I
Sbjct: 103 AKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIW 162
Query: 230 -SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRIL 287
S D L L P + LV+GG ++ +E+ + LG V +V +++ D+++V++
Sbjct: 163 DSTDAL-ELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVF 221
Query: 288 LSSLTK----------AGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNA 337
+ K V + + + + +G K P + + V+ A
Sbjct: 222 TKRIKKQFNIMLETKVTAVEAKE---DGIYVTMEGKKA-----PAEPQ----RYDAVLVA 269
Query: 338 MEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISAR 397
+ + + L+ GV++ ++ ++ +++ +T+V +IFA+G IV G+P A
Sbjct: 270 VGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIV-GQPMLAHKGVHEGH 328
Query: 398 LIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN 457
+ E + G + D +P + + E VG++E+ A +G+ +++P +
Sbjct: 329 VAAEVIAGKKHY-FDPKVIPSIAYTEPEVAWVGLTEKEAK----EEGIEYETATFPWAAS 383
Query: 458 --LLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGM 515
+ + KL+ K RVLG ++G N GE ++G+ +
Sbjct: 384 GRAIASDCADGMTKLIFDKETHRVLGGAIVGTN---------AGE------LLGEIGLAI 428
Query: 516 IFGYS 520
G
Sbjct: 429 EMGCD 433
>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 58.4 bits (141), Expect = 5e-09
Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 21/250 (8%)
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQC 300
P + LV+G S++A+E+A LG VT++ R+L D + + ++ + G+
Sbjct: 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIE--- 234
Query: 301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS 360
V+++ +S G R F E+ + +V A + + LNL IGV+ ++ +
Sbjct: 235 -VLKQTQASEVDYNG-REFILETNAGTLRAEQLLV-ATGRTPNTENLNLESIGVETERGA 291
Query: 361 YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVV 420
+ +E QT+V I+A G AA +R I G D +D S +P V+
Sbjct: 292 IRI-DEHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG--DASLDLSAMPEVI 348
Query: 421 RGDVEFGTVGMSE-EAAAKVYGADGLVIYKSSYP----TFDNLLDPLLPENFVKLVCLKG 475
D + TVG+SE EA A+ Y D + + P FD F+K+V +G
Sbjct: 349 FTDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFDT-------GGFIKMVAERG 401
Query: 476 GERVLGIHVI 485
R+LG+ V+
Sbjct: 402 SGRLLGVQVV 411
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 57.8 bits (140), Expect = 7e-09
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 22/222 (9%)
Query: 228 LISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRI 286
+I++ L + P L++GG ++ E A+ + LG VT+V + +LL D+++ I
Sbjct: 157 IINSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHI 216
Query: 287 LLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHP-ESKEPFADVFKTVVNAMEKKFDFA 345
L L GV I K ++S+ K + +E A+ V+ ++ +K
Sbjct: 217 LREKLENDGVKIFTGAALKGLNSYK--KQALFEYEGSIQEVNAEF---VLVSVGRKPRVQ 271
Query: 346 ALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFA----VGGI--VHGKPNNASMAAISARLI 399
LNL GV K V NE QT+V +I+A +GGI H + + AA+ A
Sbjct: 272 QLNLEKAGVQFSNKGISV-NEHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHA--- 327
Query: 400 IERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYG 441
+D ++Y +P + E +VG++E+ A + YG
Sbjct: 328 -----SGEDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYG 364
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC
1.8.1.14), as characterized in Staphylococcus aureus,
Pyrococcus horikoshii, and Borrelia burgdorferi, and
inferred in several other species on the basis of high
levels of CoA and an absence of glutathione as a
protective thiol [Cellular processes, Detoxification].
Length = 427
Score = 57.4 bits (139), Expect = 8e-09
Identities = 60/264 (22%), Positives = 112/264 (42%), Gaps = 25/264 (9%)
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLL-KHFDQEMVRILLSSLTKAGVSI 298
+++GG + +E+A L G VTL++ S R+L K FD+EM +I+ L K +++
Sbjct: 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINL 196
Query: 299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKK 358
+ + + + S +G + V+ F V ++ + A G+ + +
Sbjct: 197 R---LNEEVDSIEGEERVKVFTSGGVYQADMVILAT--GIKPNSELA----KDSGLKLGE 247
Query: 359 KSYVVCNEKDQTSVGNIFAVGG------IVHGKPNNASMAAIS---ARLIIERLYGMQDQ 409
+ NEK QTSV NI+A G I+ KP +A + R+ E + G +
Sbjct: 248 TGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGNDIE 307
Query: 410 LMDYSFLPVVVRGDVEFGTVGMSEEAAAKV-YGADGLVIYKSSYPTFDNLLDPLLPENFV 468
+ D+ + G++E A K+ + + ++ + PL +
Sbjct: 308 FKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLH----L 363
Query: 469 KLVCLKGGERVLGIHVIGQNNFVK 492
KL+ K R+LG +G+ K
Sbjct: 364 KLIYEKDTRRILGAQAVGKEGADK 387
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 57.0 bits (138), Expect = 1e-08
Identities = 67/271 (24%), Positives = 112/271 (41%), Gaps = 48/271 (17%)
Query: 245 LVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLL-KHFDQEMVRILLSSLTKAGVSIQCCV 302
+++G + +E LG V ++ R+L FD+E+ ++ L + GV + +
Sbjct: 153 VIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELH--L 210
Query: 303 IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYV 362
E V S G V G + E ADV V+ A K + L G+ K +
Sbjct: 211 NEFV-KSLIGEDKVEGVVTDKGEYEADV---VIVATGVKPNTEFLE--DTGLKTLKNGAI 264
Query: 363 VCNEKDQTSVGNIFAVG------GIVHGKPNNASMAAIS---ARLIIERLYGMQDQL--- 410
+ +E +TS+ NI+A G IV K +A + R++ E L G
Sbjct: 265 IVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGT 324
Query: 411 MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSS----------YPTFDNLLD 460
+ + + V+ D+E G++EE AK G D YK+ YP ++L
Sbjct: 325 LGSACIKVL---DLEAARTGLTEE-EAKKLGID----YKTVFIKDKNHTNYYPGQEDL-- 374
Query: 461 PLLPENFVKLVCLKGGERVLGIHVIGQNNFV 491
+VKL+ + +LG +IG+ V
Sbjct: 375 ------YVKLIYEADTKVILGGQIIGKKGAV 399
>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 48.4 bits (116), Expect = 2e-07
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSR-RLLKHFDQEMVRILLSSLTKAGVSIQC- 300
+ +V+GG + +E A+ L LG VT+V R RLL+ FD+E+ +IL L K G+ +
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLN 60
Query: 301 CVIEKVISSFDG 312
+E++ + DG
Sbjct: 61 TTVEEIEGNGDG 72
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 50.5 bits (121), Expect = 1e-06
Identities = 88/363 (24%), Positives = 142/363 (39%), Gaps = 50/363 (13%)
Query: 183 GIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEPRNSALI------------- 229
I ++ A F + T L R G ++A +R CL S +
Sbjct: 203 AITVLHGEARFKDDQT--LIVRLNDGGERVVAFDR-CLIATGASPAVPPIPGLKETPYWT 259
Query: 230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLS 289
S + L P + V+G S++A+E+A LG VT++ L D + + +
Sbjct: 260 STEALVS-DTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTA 318
Query: 290 SLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL 349
+ G+ + ++ DG + H E + AD K +V A + + +L L
Sbjct: 319 AFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELR---AD--KLLV-ATGRAPNTRSLAL 372
Query: 350 HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQ 409
GV + + +V ++ +TSV +I+A G AA R I G D
Sbjct: 373 DAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG--DA 430
Query: 410 LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469
+D + +P VV D + TVG SE A DG+ S T DN+ P NF
Sbjct: 431 ALDLTAMPAVVFTDPQVATVGYSEAEAH----HDGIET-DSRTLTLDNV--PRALANF-- 481
Query: 470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTK 529
F+KLV +G R++G+ + +I +LA+R +T
Sbjct: 482 ----------------DTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTV 525
Query: 530 AEL 532
EL
Sbjct: 526 QEL 528
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 46.3 bits (110), Expect = 3e-05
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Query: 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILLSSLTKAGVSIQCC 301
K LV+G +++E+ L G+ TL++ S ++ K D +M + +L L K + +
Sbjct: 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYR-- 207
Query: 302 VIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSY 361
+ + I + +G F E + + + V KF + + + K +
Sbjct: 208 -LNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPNSKF------IESSNIKLDDKGF 258
Query: 362 VVCNEKDQTSVGNIFAVGGIV 382
+ N+K +T+V NI+A+G I+
Sbjct: 259 IPVNDKFETNVPNIYAIGDII 279
>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 441
Score = 46.2 bits (109), Expect = 3e-05
Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 25/278 (8%)
Query: 184 IDIVRTAAAFTNPHTIKL----SNRSVTGFNFLLAVERRCLPEP-----RNSALISADDL 234
ID++ A F N H++++ N + G + + + P + + L
Sbjct: 92 IDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGL 151
Query: 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRL-LKHFDQEMVRILLSSLTK 293
L PG +LGG + VE A+ G VT++ + L L D+++ + + L
Sbjct: 152 LNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRD 211
Query: 294 AGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIG 353
GV I + IS + V H E + D ++ A ++ A+L+ + G
Sbjct: 212 QGVDIILNAHVERISHHENQVQV---HSEHAQLAVD---ALLIASGRQPATASLHPENAG 265
Query: 354 VDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISA---RLIIERLYGM-QDQ 409
+ + ++ +V ++ T+ NI+A+G + G IS R++ + L G +
Sbjct: 266 IAVNERGAIVVDKYLHTTADNIWAMGDVTGG----LQFTYISLDDYRIVRDELLGEGKRS 321
Query: 410 LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVI 447
D +P V VGM+EE A+ GAD V+
Sbjct: 322 TDDRKNVPYSVFMTPPLSRVGMTEE-QARESGADIQVV 358
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 45.1 bits (107), Expect = 6e-05
Identities = 59/282 (20%), Positives = 116/282 (41%), Gaps = 24/282 (8%)
Query: 169 IRAKNDSMRELKALGIDIVRTAAAFTNPHTIKLS----NRSVTGFNFLL---AVERRCLP 221
+R KN +M L G+D+ A F + I++ +T ++ AV LP
Sbjct: 78 LRGKNYAM--LAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNV-LP 134
Query: 222 EP---RNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY--SRRLL 276
P + + + + L P + ++GG + +E A N LG VT V + +L
Sbjct: 135 IPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVT-VLDAASTIL 193
Query: 277 KHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN 336
+ + + + + G++ + + DG + + E+ F ++
Sbjct: 194 PREEPSVAALAKQYMEEDGITFLLNAHTTEVKN-DGDQVLVVTEDETY-----RFDALLY 247
Query: 337 AMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISA 396
A +K + L L + +++ ++ + ++ QTSV +FAVG V+G P ++
Sbjct: 248 ATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGD-VNGGPQFTYISLDDF 306
Query: 397 RLIIERLYGMQD-QLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
R++ L G L D +P + VG++E+ A
Sbjct: 307 RIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAK 348
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 42.7 bits (101), Expect = 4e-04
Identities = 81/322 (25%), Positives = 132/322 (40%), Gaps = 46/322 (14%)
Query: 193 FTNPHTIKLS-----NRSVTGFNFLLAV--ERRCLPEPRNSA-------LISADDLFRLG 238
FT+ +T+++ +VT N ++A R LP S I + +L
Sbjct: 116 FTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVTYEEQILSREL---- 171
Query: 239 AWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVS 297
P ++ G + +E A L GV VT+V + R L + D E+ + + K GV
Sbjct: 172 --PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVK 229
Query: 298 IQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA----ALNLHHIG 353
I KV S D V K+ A + + + + FA L G
Sbjct: 230 ILTGT--KVESIDDNGSKVT-VTVSKKDGKAQELE--ADKVLQAIGFAPRVEGYGLEKTG 284
Query: 354 VDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQ-LMD 412
V + + + ++ +T+V +I+A+G V K A +A + E + G + L D
Sbjct: 285 VALTDRGAIAIDDYMRTNVPHIYAIGD-VTAKLQLAHVAEAQGVVAAETIAGAETLELGD 343
Query: 413 YSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN-----LLDPLLPENF 467
Y +P + + G++EE A +G + + +P N L D P F
Sbjct: 344 YRMMPRATFCQPQVASFGLTEEQAR----EEGYDVKVAKFPFTANGKAHGLGD---PTGF 396
Query: 468 VKLVC-LKGGERVLGIHVIGQN 488
VKLV K GE +LG H+IG +
Sbjct: 397 VKLVADAKYGE-LLGGHLIGPD 417
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 41.1 bits (96), Expect = 0.001
Identities = 52/267 (19%), Positives = 91/267 (34%), Gaps = 21/267 (7%)
Query: 233 DLFRLGAWPGKT-LVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKH-FDQEMVRILLS 289
+ + GA P K +V+G + +E A G VTL+ + RL D E+ L
Sbjct: 127 EALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAE 186
Query: 290 SLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL 349
L K GV + + V G V ++ E+ A +
Sbjct: 187 LLEKYGVELL-LGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDA 245
Query: 350 HHIGVDIKKKSYVVCNEKDQTS-VGNIFAVG---------GIVHGKPNNASMAAISARLI 399
G+ + V+ +E+ TS +++A G G+ ++A + R+
Sbjct: 246 -LPGLALAGG-AVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIA 303
Query: 400 IERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL 459
E + G + GD+ + G++E + LV+ L
Sbjct: 304 AENIAGALRIPGLLGT-VISDVGDLCAASTGLTEGKERGI--DVVLVVSGG--KDPRAHL 358
Query: 460 DPLLPENFVKLVCLKGGERVLGIHVIG 486
P +KLV R+LG +
Sbjct: 359 YPGAELVGIKLVGDADTGRILGGQELE 385
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 40.7 bits (96), Expect = 0.001
Identities = 37/166 (22%), Positives = 60/166 (36%), Gaps = 23/166 (13%)
Query: 243 KTLVLGGSLMAVEIAATLNFLGVP-VTLVYSRRLLKHFDQEM---VRILLSSLTKAGVSI 298
+ +V+GG A++ A T LG VT Y ++ ++ + S + GV
Sbjct: 264 RVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVER 323
Query: 299 QCCV-IEKVISSFDG-----------------MKGVRGFHPESKEPFADVFKTVVNAMEK 340
V + I + G G RG D TV+ A+
Sbjct: 324 LPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGF 383
Query: 341 KFDFAALNLHHIGVDIKKKSYVVCNEK-DQTSVGNIFAVGGIVHGK 385
+ D L G+ + K+ + +E QTS+ +FA G V G
Sbjct: 384 EGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA 429
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 40.0 bits (94), Expect = 0.002
Identities = 38/158 (24%), Positives = 56/158 (35%), Gaps = 18/158 (11%)
Query: 242 GKTLVLGGSLMAVEIAATLNFLGV-PVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQC 300
K +V+G L AV+ A LG V L Y RR + + + L GV
Sbjct: 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAY-RRTINE--APAGKYEIERLIARGVEFLE 229
Query: 301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA-------------- 346
V I ++GV EP V +F A
Sbjct: 230 LVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPP 289
Query: 347 LNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG 384
+G+++ +K +V +EK TS +FA G +V G
Sbjct: 290 FAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTG 327
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 39.6 bits (93), Expect = 0.003
Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 18/162 (11%)
Query: 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCV 302
+V+GG AVE A L+ + VTLV+ R + ++ +V L ++ + V
Sbjct: 145 DVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA-EEILVERLKKNV--KIEVLTNTV 201
Query: 303 IEKVI-SSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSY 361
+++++ +G+ E + P VF + + + + Y
Sbjct: 202 VKEILGDDVEGVVLKNVKGEEKELPVDGVF--IAIGHLPNTELLKG-----LGVLDENGY 254
Query: 362 VVCNEKDQTSVGNIFAVGGIVHGKP-------NNASMAAISA 396
+V +E+ +TSV IFA G + + ++AA+SA
Sbjct: 255 IVVDEEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSA 296
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome partitioning].
Length = 1480
Score = 36.8 bits (85), Expect = 0.037
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 94 IGDEGILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVT 153
+ D G+ + + + RRDEL + LS + RR ++ E E D+ L
Sbjct: 1042 LQDIGVRADSGAEERARIRRDELHAQ---LSTNRSRRNQLEKQLTFCEAEMDN---LTRK 1095
Query: 154 IRNWNAATKLIKRFCIRAK 172
+R ++ + AK
Sbjct: 1096 LRKLERDYFEMREQVVTAK 1114
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 34.5 bits (79), Expect = 0.14
Identities = 70/334 (20%), Positives = 136/334 (40%), Gaps = 45/334 (13%)
Query: 227 ALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMV- 284
++ ++D +L ++G ++ +E LG V YS +LL D ++
Sbjct: 298 SVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVAK 357
Query: 285 ---RILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKK 341
R+ L S V + + + + + G + V H E + +D K +N +++
Sbjct: 358 YFERVFLKS-KPVRVHLNTLI--EYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKET 414
Query: 342 FDFAAL-------NLHHIGVD----IKKKSYVVCNE------KDQTSVGNIFAVGGIVHG 384
+ + L N +++G+D K+ +V +E +DQ NIF +G +G
Sbjct: 415 YVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGD-ANG 473
Query: 385 KPNNASMAAISARLIIERLYGMQDQLMD------------YSFLPVVVRGDVEFGTVGMS 432
K A A+ A +++ + G + ++ Y +P V E +G++
Sbjct: 474 KQMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLT 533
Query: 433 EEAAAKVYGADGLVIYKSSYPTFDNLL---DPLLPENFVKLVCLKGGERVLGIHVIGQNN 489
E+ A ++Y D + + S Y +L + P N KG V
Sbjct: 534 EKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNT----VDNTEG 589
Query: 490 FVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLAL 523
VK+V LK + +LG+ ++G + +I LA+
Sbjct: 590 MVKIVYLKDTKEILGMFIVGSYASILIHEGVLAI 623
>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 33.3 bits (77), Expect = 0.33
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 234 LFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSR-RLLKHFDQEMVRILLSSLT 292
L+ L P +V+G + E A+ LGV VTLV SR R+L D + +L
Sbjct: 170 LYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFA 229
Query: 293 KAGVSI 298
+ G+++
Sbjct: 230 RRGMTV 235
Score = 31.8 bits (73), Expect = 0.88
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 490 FVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
FVKL C G V+G V+ + +I +LA++ LT +L T
Sbjct: 396 FVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQT 441
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 32.8 bits (75), Expect = 0.53
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 41/174 (23%)
Query: 241 PGKTLVLGGSLMAVEIA---ATLNFLG---VPVTLVYSRRLLKHFDQEMVRILLSSLTKA 294
P +V+GG +A++IA A L + V V + R + +M I +
Sbjct: 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGL--EE 475
Query: 295 GVSI------QCCVIE----------KVISSFDGMKGVRGFHP---ESKEPFADVFKTVV 335
GV I VIE K + FD F+P ES + + VV
Sbjct: 476 GVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEE---GRFNPKFDESDQIIVEA-DMVV 531
Query: 336 NAMEKKFDFAALNLHHIGVDIKKK-----SYVVCNEKDQTSVGNIFAVGGIVHG 384
A+ + D++ L ++K K ++ NE QTS+ +FA G IVHG
Sbjct: 532 EAIGQAPDYSYL-----PEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHG 580
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit. [Central intermediary metabolism, Nitrogen
metabolism].
Length = 785
Score = 32.5 bits (74), Expect = 0.74
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 243 KTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLL-KHFDQEMVRILLSSLTKAGVSIQC 300
K V+GG L+ +E A L LG+ V+++ ++ L+ K DQ R+L L + G++
Sbjct: 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLL 201
Query: 301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKS 360
I +R S E V + ++ A G+ + +
Sbjct: 202 EKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDE---LAV----SAGIKVNRG- 253
Query: 361 YVVCNEKDQTSVGNIFAVG------GIVHG 384
++ N+ QTS +I+AVG G V+G
Sbjct: 254 -IIVNDSMQTSDPDIYAVGECAEHNGRVYG 282
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 31.6 bits (72), Expect = 1.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 353 GVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG 384
G+++ +K +V +E+ Q+S+ I+A G IV G
Sbjct: 696 GLELNRKGTIVVDEEMQSSIPGIYAGGDIVRG 727
>gnl|CDD|149033 pfam07742, BTG, BTG family.
Length = 119
Score = 29.9 bits (68), Expect = 1.3
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 252 MAVEIAATLNFLGVPVTLVY-----SRRLLKHFDQEMVRIL 287
M EIAA +NF+ L++ RR ++ F +E+ L
Sbjct: 1 MYTEIAAAVNFV---CRLLFGKGKLPRRQVEIFAEELENAL 38
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 31.5 bits (72), Expect = 1.4
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 333 TVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG 384
TV+ A+ ++ D L G+ + KK + V + +TS+ N++ +G + G
Sbjct: 770 TVITAIGEQVDTELLK--ANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRG 819
>gnl|CDD|99847 cd06144, REX4_like, DEDDh 3'-5' exonuclease domain of RNA
exonuclease 4, XPMC2, Interferon Stimulated Gene product
of 20 kDa, and similar proteins. This subfamily is
composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2,
Interferon (IFN) Stimulated Gene product of 20 kDa
(ISG20), and similar proteins. REX4 is involved in
pre-rRNA processing. It controls the ratio between the
two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene
which was identified through its ability to correct a
mitotic defect in fission yeast. The human homolog of
XPMC2 (hPMC2) may be involved in angiotensin II-induced
adrenal cell cycle progression and cell proliferation.
ISG20 is an IFN-induced antiviral exonuclease with a
strong preference for single-stranded RNA and minor
activity towards single-stranded DNA. These proteins are
DEDDh-type DnaQ-like 3'-5' exonucleases containing three
conserved sequence motifs termed ExoI, ExoII and ExoIII,
with a specific Hx(4)D conserved pattern at ExoIII.
These motifs are clustered around the active site and
contain four conserved acidic residues that serve as
ligands for the two metal ions required for catalysis.
REX proteins function in the processing and maturation
of many RNA species, similar to the function of
Escherchia coli RNase T.
Length = 152
Score = 30.2 bits (69), Expect = 1.6
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 315 GVRGFHPESKEPFADVFKTVVNAMEKK--------FDFAALNLHHIGVDI 356
G+R H + F +V K V ++ + D L L H I
Sbjct: 52 GIRPEHLKDAPDFEEVQKKVAELLKGRILVGHALKNDLKVLKLDHPKKLI 101
>gnl|CDD|215433 PLN02807, PLN02807, diaminohydroxyphosphoribosylaminopyrimidine
deaminase.
Length = 380
Score = 30.9 bits (70), Expect = 1.9
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 301 CVIEKVISSFDGMKGVRGFHPESKEPFADVF 331
CVI K DG GFHP++ +P A+VF
Sbjct: 58 CVIVK-----DGRIVGEGFHPKAGQPHAEVF 83
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH [Amino acid
biosynthesis, Glutamate family].
Length = 449
Score = 30.6 bits (69), Expect = 2.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSR 273
+V+GG AV+ A T LG V +Y R
Sbjct: 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRR 304
>gnl|CDD|236499 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component;
Reviewed.
Length = 924
Score = 30.5 bits (70), Expect = 2.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 89 LYLDRIGDEGILLEEELKRQTNQRRDELQE 118
LY D++ EG++ EEE N+ RD L
Sbjct: 479 LYADKLVAEGVITEEEADEMVNEYRDALDA 508
>gnl|CDD|220395 pfam09778, Guanylate_cyc_2, Guanylylate cyclase. Members of this
family of proteins catalyze the conversion of guanosine
triphosphate (GTP) to 3',5'-cyclic guanosine
monophosphate (cGMP) and pyrophosphate.
Length = 212
Score = 29.7 bits (67), Expect = 3.5
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 277 KHFDQEMVRI--LLSSLTKAGVSIQCCVI 303
KHFD + VR+ L AG+ ++C +
Sbjct: 83 KHFDADEVRVNELFQKAESAGIDVECRSV 111
>gnl|CDD|211851 TIGR03611, RutD, pyrimidine utilization protein D. This protein is
observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the hydrolase, alpha/beta fold
family defined by pfam00067.
Length = 248
Score = 29.3 bits (66), Expect = 4.5
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 224 RNSALISADDLFRLGAWPGKTLVLG--GSLMAVEIAATLNFLGVPVTLVYSR 273
N+ ++AD+ L +PGK VL +L A +++A L+ + PV L+ +R
Sbjct: 155 ENAPRLAADEAHALAHFPGKNNVLRRINALEAFDVSARLDRIRHPVLLIAAR 206
>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA;
Provisional.
Length = 292
Score = 29.3 bits (65), Expect = 4.8
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 266 PVTLVYSRRLLKHFDQEMVRILLSSLTKAGV 296
PVT+ S++LL +D+ M+ LS+L AG+
Sbjct: 19 PVTMAVSKQLLPIYDKPMIYYPLSTLMLAGI 49
>gnl|CDD|238848 cd01715, ETF_alpha, The electron transfer flavoprotein (ETF) serves
as a specific electron acceptor for various
mitochondrial dehydrogenases. ETF transfers electrons to
the main respiratory chain via ETF-ubiquinone
oxidoreductase. ETF is an heterodimer that consists of
an alpha and a beta subunit which binds one molecule of
FAD per dimer . A similar system also exists in some
bacteria. The homologous pair of proteins (FixA/FixB)
are essential for nitrogen fixation. The alpha subunit
of ETF is structurally related to the bacterial nitrogen
fixation protein fixB which could play a role in a redox
process and feed electrons to ferredoxin.
Length = 168
Score = 28.7 bits (65), Expect = 4.9
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 427 GTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLV 471
G+ + AA K YGAD +++ + L L E + +
Sbjct: 37 GSGAEAVAAALKAYGADKVLVAEDP------ALAHYLAEPYAPAL 75
>gnl|CDD|218192 pfam04655, APH_6_hur, Aminoglycoside/hydroxyurea antibiotic
resistance kinase. The aminoglycoside
phosphotransferases achieve inactivation of their
antibiotic substrates by phosphorylation utilising ATP.
Likewise hydroxyurea is inactivated by phosphorylation
of the hydroxy group in the hydroxylamine moiety.
Length = 253
Score = 29.0 bits (65), Expect = 5.7
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 70 EENARAERYLNARGDRFAVLYLDRIGDEGILLEEEL 105
E+ R L R AV L R + G LL E
Sbjct: 41 EDERRGALLLVWWDGRGAVRLLARDEEGGALLLERA 76
>gnl|CDD|224338 COG1420, HrcA, Transcriptional regulator of heat shock gene
[Transcription].
Length = 346
Score = 29.1 bits (66), Expect = 5.8
Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 57 ENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRDEL 116
ENRI+ + + LNA R L+ I + E +R + D L
Sbjct: 161 ENRIIELPEGITLSDLEELSNILNA---RLRGTTLNEIRTKLEKELPEFRRILGELVDNL 217
Query: 117 QERGSHL-SFRKKRRLY 132
E G H S RL
Sbjct: 218 LELGLHFFSLDGDSRLL 234
>gnl|CDD|225343 COG2723, BglB,
Beta-glucosidase/6-phospho-beta-glucosidase/beta-
galactosidase [Carbohydrate transport and metabolism].
Length = 460
Score = 29.1 bits (66), Expect = 6.5
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 315 GVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNE 366
VRG+ S D + N +K++ ++ KKS+ E
Sbjct: 401 DVRGYFAWS---LIDNYSWA-NGYKKRYGLVYVDYDTDLERTPKKSFYWYKE 448
>gnl|CDD|166479 PLN02838, PLN02838, 3-hydroxyacyl-CoA dehydratase subunit of
elongase.
Length = 221
Score = 28.6 bits (64), Expect = 6.7
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 256 IAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKG 315
++ATL +G + L + +L F + IL++SL I + E + SF GMK
Sbjct: 74 VSATLPQIGSRLFLTWG--ILWSFPEVRSHILVTSLV-----ISWSITEIIRYSFFGMKE 126
Query: 316 VRGFHP 321
GF P
Sbjct: 127 AFGFAP 132
>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related
dehydrogenases. Alanine dehydrogenase/Transhydrogenase,
such as the hexameric L-alanine dehydrogenase of
Phormidium lapideum, contain 2 Rossmann fold-like
domains linked by an alpha helical region. Related
proteins include Saccharopine Dehydrogenase (SDH),
bifunctional lysine ketoglutarate reductase
/saccharopine dehydrogenase enzyme,
N(5)-(carboxyethyl)ornithine synthase, and Rubrum
transdehydrogenase. Alanine dehydrogenase (L-AlaDH)
catalyzes the NAD-dependent conversion of pyrucate to
L-alanine via reductive amination. Transhydrogenases
found in bacterial and inner mitochondrial membranes
link NAD(P)(H)-dependent redox reactions to proton
translocation. The energy of the proton electrochemical
gradient (delta-p), generated by the respiratory
electron transport chain, is consumed by
transhydrogenase in NAD(P)+ reduction. Transhydrogenase
is likely involved in the regulation of the citric acid
cycle. Rubrum transhydrogenase has 3 components, dI,
dII, and dIII. dII spans the membrane while dI and dIII
protrude on the cytoplasmic/matirx side. DI contains 2
domains with Rossmann folds, linked by a long alpha
helix, and contains a NAD binding site. Two dI
polypeptides (represented in this sub-family)
spontaneously form a heterotrimer with one dIII in the
absence of dII. In the heterotrimer, both dI chains may
bind NAD, but only one is well-ordered. dIII also binds
a well-ordered NADP, but in a different orientation than
classical Rossmann domains.
Length = 317
Score = 28.9 bits (65), Expect = 7.2
Identities = 26/147 (17%), Positives = 50/147 (34%), Gaps = 19/147 (12%)
Query: 238 GAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVS 297
G P K L++G ++ + A LG V VY + K ++ + +
Sbjct: 159 GVPPAKVLIIGAGVVGLGAAKIAKKLGANVL-VYDIKEEK------LKGVETLGGSRLRY 211
Query: 298 IQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIK 357
Q +EK + D + + P + + +V M++ + VD+
Sbjct: 212 SQKEELEKELKQTDILINA-ILVDGPRAPIL-IMEELVGPMKR---------GAVIVDLA 260
Query: 358 KKSYVVCNEKDQTSVG-NIFAVGGIVH 383
T+ G + V G+V
Sbjct: 261 ADQGGNDETSIPTTEGVPTYEVDGVVI 287
>gnl|CDD|168201 PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 405
Score = 29.0 bits (65), Expect = 7.6
Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 222 EPRNSALISADD--LFRLGAWPG 242
EPR SAL +A L RLGAW G
Sbjct: 48 EPRVSALSAASQRILERLGAWDG 70
>gnl|CDD|236627 PRK09824, PRK09824, PTS system beta-glucoside-specific transporter
subunits IIABC; Provisional.
Length = 627
Score = 28.9 bits (65), Expect = 7.9
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 27/85 (31%)
Query: 236 RLGAWPGKTLVLGGSL-----------MAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEM 283
+ G P +V+GG+L A L+FLG+PVTL+ YS +
Sbjct: 168 KFGGNPFTAMVIGGALVHPLMIAAFEAGQKADALGLDFLGIPVTLLNYS--------SSV 219
Query: 284 VRILLSSLTKAGVSIQCCVIEKVIS 308
+ I+ S+ C ++E+ ++
Sbjct: 220 IPIIFSAWL-------CSILERRLN 237
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 28.8 bits (65), Expect = 8.1
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 27/156 (17%)
Query: 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLL-KHFDQEMVRILLSSLTKAGVSIQ 299
K +V+GG L+ +E A L LG+ VT+V+ + L+ + D+ R+L L G+ +
Sbjct: 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKV- 204
Query: 300 CCVIEKV---ISSFDGMKGVRGFHPESKEPFADVFKTVVNA--MEKKFDFAALNLHHIGV 354
++EK I D ++GVR F ++ P AD+ VV A + + A G+
Sbjct: 205 --LLEKNTEEIVGEDKVEGVR-FADGTEIP-ADL---VVMAVGIRPNDELAK----EAGL 253
Query: 355 DIKKKSYVVCNEKDQTSVGNIFAVG------GIVHG 384
+ + +V N+ QTS +I+AVG G V+G
Sbjct: 254 AVNRG--IVVNDYMQTSDPDIYAVGECAEHRGKVYG 287
>gnl|CDD|172608 PRK14118, gpmA, phosphoglyceromutase; Provisional.
Length = 227
Score = 28.4 bits (63), Expect = 8.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 430 GMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLP 464
G+ ++A A+ YG + + I++ SY T LDP P
Sbjct: 94 GLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDP 128
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.398
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,787,237
Number of extensions: 2816214
Number of successful extensions: 2847
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2743
Number of HSP's successfully gapped: 103
Length of query: 535
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 433
Effective length of database: 6,413,494
Effective search space: 2777042902
Effective search space used: 2777042902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)