RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14461
(535 letters)
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 221 bits (565), Expect = 3e-66
Identities = 111/368 (30%), Positives = 182/368 (49%), Gaps = 32/368 (8%)
Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSN----RSVTGFNFLLAV-ERRCLPE-PRNSAL-I 229
+L+ ++ + +F + HT+ R++T F++AV R P+ P I
Sbjct: 116 VDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGI 175
Query: 230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLS 289
++DDLF L PGKTLV+G + +E A L LG T++ +L+ FDQ+M ++ +
Sbjct: 176 TSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAA 235
Query: 290 SLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALN 348
S+ + G+ V V DG V+ + E+ E DV+ TV+ A+ +K LN
Sbjct: 236 SMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLN 295
Query: 349 LHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQD 408
L + GV + +K + + ++ T+V NI+AVG I++GKP +A ++ RL+ RLYG
Sbjct: 296 LPNAGVTV-QKDKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGST 354
Query: 409 QLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPLLPENF 467
Q MDY + V +E+ VG+SEE A K +GAD + ++ Y PT + + +
Sbjct: 355 QRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCY 414
Query: 468 VKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFL 527
+K V + G+ +RV G+H IG +I G++ AL+ L
Sbjct: 415 LKAVAERHGD----------------------QRVYGLHYIGPVAGEVIQGFAAALKSGL 452
Query: 528 TKAELDGT 535
T L T
Sbjct: 453 TINTLINT 460
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 221 bits (565), Expect = 9e-66
Identities = 105/373 (28%), Positives = 173/373 (46%), Gaps = 36/373 (9%)
Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAV-ERRCLPE-PRNSAL- 228
L+ + F PH IK +N + + FL+A ER P +
Sbjct: 138 VALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYC 197
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILL 288
IS+DDLF L PGKTLV+G S +A+E A L +G+ VT++ LL+ FDQ+M +
Sbjct: 198 ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIG 257
Query: 289 SSLTKAGVSI--QCCV--IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF 344
+ + G+ Q +E++ + G V S+E + TV+ A+ +
Sbjct: 258 EHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT 317
Query: 345 AALNLHHIGVDIKKKS-YVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
+ L +GV I +K+ + +++QT+V I+A+G I+ K +A + RL+ +RL
Sbjct: 318 RKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRL 377
Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPL 462
Y DY +P V +E+G G+SEE A + +G + + +Y S + P +
Sbjct: 378 YAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRD 437
Query: 463 LPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLA 522
+ + K++C K ERV+G HV+G N + G++ A
Sbjct: 438 NNKCYAKIICNT----------------------KDNERVVGFHVLGPNAGEVTQGFAAA 475
Query: 523 LRKFLTKAELDGT 535
L+ LTK +LD T
Sbjct: 476 LKCGLTKKQLDST 488
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 216 bits (552), Expect = 1e-64
Identities = 93/364 (25%), Positives = 163/364 (44%), Gaps = 34/364 (9%)
Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV-ERRCLPE-PRNSALISADDL 234
L +D+++ A F + T++++ ++T + L+A R P+ P I +D
Sbjct: 101 NVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGF 160
Query: 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILLSSLTK 293
F L A P + V+G + VE+ +N LG L L FD + L+ +
Sbjct: 161 FALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNA 220
Query: 294 AGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHI 352
G + + + V+ + DG + E + ++ A+ ++ +NL
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLTL---ELEDGRS--ETVDCLIWAIGREPANDNINLEAA 275
Query: 353 GVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG-MQDQLM 411
GV +K Y+V ++ T++ I+AVG G +A + R + ERL+ D+ +
Sbjct: 276 GVKTNEKGYIVVDKYQNTNIEGIYAVGDNT-GAVELTPVAVAAGRRLSERLFNNKPDEHL 334
Query: 412 DYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLV 471
DYS +P VV GTVG++E A + YG D + +YKSS+ +
Sbjct: 335 DYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSF-------TAM--------- 378
Query: 472 CLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAE 531
+ H Q +KLVC+ E+++GIH IG + M+ G+++AL+ TK +
Sbjct: 379 -----YTAVTTH--RQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKD 431
Query: 532 LDGT 535
D T
Sbjct: 432 FDNT 435
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 216 bits (552), Expect = 3e-64
Identities = 92/371 (24%), Positives = 171/371 (46%), Gaps = 34/371 (9%)
Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAV-ERRCLPE--PRNSAL 228
+L+ + A+F + HT++ + ++ + ++A R P
Sbjct: 112 VQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEY 171
Query: 229 -ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRIL 287
I++DD+F L PGKTLV+G S +A+E A L +G+ T++ L+ FDQ+M ++
Sbjct: 172 GITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLV 231
Query: 288 LSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAA 346
+ G CV + V S + F TV+ A+ + +
Sbjct: 232 TEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRT 291
Query: 347 LNLHHIGVDIKKKSY-VVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYG 405
LNL G+ K+ ++ + ++ TSV +I+A+G + G+P A + +L+ +RL+G
Sbjct: 292 LNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFG 351
Query: 406 MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLLDPLLP 464
LMDYS +P V +E+G VG+SEE A ++G + + +Y + Y P + D
Sbjct: 352 KSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDAS 411
Query: 465 ENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALR 524
+ ++K+VC++ + VLG+H +G N + G++L ++
Sbjct: 412 QCYIKMVCMREPP----------------------QLVLGLHFLGPNAGEVTQGFALGIK 449
Query: 525 KFLTKAELDGT 535
+ A++ T
Sbjct: 450 CGASYAQVMQT 460
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 211 bits (539), Expect = 1e-62
Identities = 92/364 (25%), Positives = 161/364 (44%), Gaps = 35/364 (9%)
Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV-ERRCLPE-PRNSALISADDL 234
++ LGI V A F + HTI++ + ++ + ++A R +P P I++D
Sbjct: 100 GYVERLGITRVDGHARFVDAHTIEVEGQRLSADHIVIATGGRPIVPRLPGAELGITSDGF 159
Query: 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILLSSLTK 293
F L P + ++G + +E+A L G VT+V RLL FD + L ++
Sbjct: 160 FALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHA 219
Query: 294 AGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHI 352
G+ + + G V + F +V+ A+ + + L L
Sbjct: 220 QGIETHLEFAVAALERDAQGTTLVAQDGTRLEG-----FDSVIWAVGRAPNTRDLGLEAA 274
Query: 353 GVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY-GMQDQLM 411
G++++ V + T+V ++A+G I G+ +A + R + ERL+ G ++ +
Sbjct: 275 GIEVQSNGMVPTDAYQNTNVPGVYALGDIT-GRDQLTPVAIAAGRRLAERLFDGQSERKL 333
Query: 412 DYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLV 471
DY +P VV VG+SE A + G D L +Y++S+ P+
Sbjct: 334 DYDNIPTVVFAHPPLSKVGLSEPEARERLG-DVLTVYETSFT-------PM--------- 376
Query: 472 CLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAE 531
L H G +KLVC +RV+G+HVIG M+ G+++A++ TKA+
Sbjct: 377 -----RYALNEH--GPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKAD 429
Query: 532 LDGT 535
D T
Sbjct: 430 FDNT 433
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 214 bits (546), Expect = 2e-62
Identities = 107/376 (28%), Positives = 175/376 (46%), Gaps = 39/376 (10%)
Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAV-ERRCLPE-PRNSAL- 228
L+ + + +PH +++++ ++TG +LA ER PE P
Sbjct: 214 VALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYG 273
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILL 288
I++DDLF L +PGKTLV+G S +A+E A L LG VT++ LL+ FDQ+M +
Sbjct: 274 ITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVG 333
Query: 289 SSLTKAGVSIQCCVIEKVISSFDGMKGVRG--------FHPESKEPFADVFKTVVNAMEK 340
+ GV + I + H + F + F+TV+ A+ +
Sbjct: 334 DYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGR 393
Query: 341 KFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLII 400
+ + + +GV + K VVC + +QT+V N++A+G I GKP +A + R +
Sbjct: 394 EPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLA 453
Query: 401 ERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSY-PTFDNLL 459
RL+ +L DYS + V +E+G G+SEE A + YG + +Y S++ P +
Sbjct: 454 RRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVA 513
Query: 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGY 519
++KLVC K RVLG+HV+G N + GY
Sbjct: 514 HREDNVCYMKLVCRKSDN----------------------MRVLGLHVLGPNAGEITQGY 551
Query: 520 SLALRKFLTKAELDGT 535
++A++ TKA+ D T
Sbjct: 552 AVAIKMGATKADFDRT 567
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 210 bits (536), Expect = 4e-62
Identities = 92/366 (25%), Positives = 160/366 (43%), Gaps = 38/366 (10%)
Query: 177 RELKALGIDIVRTAAAFTNPHTIKL--SNRSVTGFNFLLAV-ERRCLPE--PRNSALISA 231
+ L G +I+ T A P+T+KL S ++VT ++AV + P + I++
Sbjct: 101 KGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITS 160
Query: 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILLSS 290
++ F L A P L+ GG +AVE A + LGV TL+Y + +L FDQ+M R L ++
Sbjct: 161 NEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAA 220
Query: 291 LTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL 349
+ + G+ I C +I+ V + DG + V V+ A+ + + L L
Sbjct: 221 MEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-----IVADQVMLALGRMPNTNGLGL 275
Query: 350 HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQ 409
GV + ++ + +TS I+A+G + + +A A IE Y
Sbjct: 276 EAAGVRTNELGAIIVDAFSRTSTPGIYALGDVT-DRVQLTPVAIHEAMCFIETEYKNNPT 334
Query: 410 LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469
D+ + V E GTVG++EE AA+ + + +Y++ + P+
Sbjct: 335 SPDHDLIATAVFSQPEIGTVGITEEEAARKFQE--IEVYRAEF-------RPM------- 378
Query: 470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTK 529
+ L + +KLV +V+G H++G + M ++LR TK
Sbjct: 379 -------KATLSGR--KEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTK 429
Query: 530 AELDGT 535
+ D T
Sbjct: 430 DDFDRT 435
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 208 bits (532), Expect = 2e-61
Identities = 93/372 (25%), Positives = 174/372 (46%), Gaps = 37/372 (9%)
Query: 177 RELKALGIDIVRTAAAFTNPH--TIKLSNRSVTGFNFLLAV-ERRCLPEPRN---SAL-I 229
L I+I+R AAFT+ TI++S + T + L+A P ++L I
Sbjct: 116 NNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGI 175
Query: 230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILL 288
++D F+L PG+++++G +AVE+A L+ LG +L+ ++L+ FD +
Sbjct: 176 TSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCT 235
Query: 289 SSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADV---FKTVVNAMEKKFDF 344
L AGV + +++V + G++ + P + ++ A+ + +
Sbjct: 236 EELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT 295
Query: 345 AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLY 404
L+L+ +G+ K +++ +E T+V I+AVG + GK +A + R + RL+
Sbjct: 296 KDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC-GKALLTPVAIAAGRKLAHRLF 354
Query: 405 G-MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLL 463
+D +DY+ +P VV GTVG++E+ A YG + + Y +S+ P+
Sbjct: 355 EYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSF-------TPM- 406
Query: 464 PENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLAL 523
+ +K+VC E+V+GIH+ G M+ G+++A+
Sbjct: 407 -------------YHAVTKR--KTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAV 451
Query: 524 RKFLTKAELDGT 535
+ TKA+ D T
Sbjct: 452 KMGATKADFDNT 463
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 206 bits (528), Expect = 8e-61
Identities = 87/366 (23%), Positives = 157/366 (42%), Gaps = 39/366 (10%)
Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSN--RSVTGFNFLLAV-ER-RCLPEPRNSAL-ISA 231
L+ + I + A F + HT++LS ++ L+A + + S L +++
Sbjct: 122 EGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTS 181
Query: 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRILLSS 290
+++F L P +++GG + VE A + LGV TL++ +L++FD ++ ++L +
Sbjct: 182 NEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDA 241
Query: 291 LTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNL 349
+ G+SI + +V S+ + + + V+ A + + L L
Sbjct: 242 MVAKGISIIYEATVSQVQSTENCYN----VVLTNGQTI--CADRVMLATGRVPNTTGLGL 295
Query: 350 HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQ 409
GV + + VV +EK T+V +I+AVG + G +A A ++ +
Sbjct: 296 ERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVT-GHIQLTPVAIHDAMCFVKNAFENTST 354
Query: 410 LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVK 469
DY + V E GTVG+SEE A Y + IY++ + P+
Sbjct: 355 TPDYDLITTAVFSQPEIGTVGLSEEDALHRYKR--VEIYRTVF-------RPM------- 398
Query: 470 LVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTK 529
VL + F+KLV V+G HV+G+N + ++L+ LTK
Sbjct: 399 -------RNVLSGS--PEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTK 449
Query: 530 AELDGT 535
D T
Sbjct: 450 DIFDKT 455
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 206 bits (528), Expect = 9e-61
Identities = 78/379 (20%), Positives = 157/379 (41%), Gaps = 55/379 (14%)
Query: 177 RELKALGIDIVRTAAAFTNPHTIKLSN-----RSVTGFNFLLAV-ERRCLPE--PRNSAL 228
+ L+ +D+V A F +++ + + L+A + PE P
Sbjct: 113 KNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELG 172
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQEMVRIL 287
+D FRL P K +V+G + +E+A + LG LV +L+ FD+ + +
Sbjct: 173 TDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTI 232
Query: 288 LSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA- 345
K G+++ I KV + + H + D ++ +
Sbjct: 233 TDHYVKEGINVHKLSKIVKVEKNVET--DKLKIHMNDSKSI-DDVDELI--------WTI 281
Query: 346 ------ALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLI 399
+ ++G+ + ++ +E T+V NI+++G +V GK +A + R +
Sbjct: 282 GRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDVV-GKVELTPVAIAAGRKL 340
Query: 400 IERLYG---MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFD 456
RL+G ++ +DY +P V+ E G++G+SE+ A + YG + + +Y S +
Sbjct: 341 SNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSKFT--- 397
Query: 457 NLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMI 516
+ + K+VC E+V+G+H++G + A ++
Sbjct: 398 ----AM--------------YYAMLSE--KSPTRYKIVCAGPNEKVVGLHIVGDSSAEIL 437
Query: 517 FGYSLALRKFLTKAELDGT 535
G+ +A++ TKA+ D
Sbjct: 438 QGFGVAIKMGATKADFDNC 456
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 197 bits (504), Expect = 3e-57
Identities = 71/372 (19%), Positives = 140/372 (37%), Gaps = 46/372 (12%)
Query: 180 KALGIDIVRTAAAFTNPHTIKL---------SNRSVTGFNFLLAV-ERRCLPE-PRNSAL 228
G+ + A + HT+ + ++ LLA +
Sbjct: 115 DTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGDDLC 174
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIA---ATLNFLGVPVTLVY-SRRLLKHFDQEMV 284
I++++ F L P + L +GG +++E A G V L Y +L+ FD E+
Sbjct: 175 ITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELR 234
Query: 285 RILLSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
+ L L G++++ KV + DG + V + + V+ A+ +
Sbjct: 235 KQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEAD-----YDVVMLAIGRVPR 289
Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
L L GV++ K + + +T+V NI+A+G + + +A ++ +
Sbjct: 290 SQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVT-DRVMLTPVAINEGAAFVDTV 348
Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLL 463
+ + + D++ + V G G EE AAK Y + +Y+SS+ PL
Sbjct: 349 FANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQ--VAVYESSFT-------PL- 398
Query: 464 PENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLAL 523
+ V++V VLG+H++G + +I ++ L
Sbjct: 399 -----MHNISGSTYKKF---------MVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICL 444
Query: 524 RKFLTKAELDGT 535
+ ++ T
Sbjct: 445 KMGAKISDFYNT 456
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 196 bits (500), Expect = 1e-56
Identities = 79/372 (21%), Positives = 144/372 (38%), Gaps = 46/372 (12%)
Query: 180 KALGIDIVRTAAAFTNPHTIKLSN---------RSVTGFNFLLAV-ERRCLPEPRNSAL- 228
G+D + + + + + + + LLA +P
Sbjct: 119 DTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIEHC 178
Query: 229 ISADDLFRLGAWPGKTLVLGGSLMAVEIA---ATLNFLGVPVTLVY-SRRLLKHFDQEMV 284
IS+++ F L P + L +GG ++VE A G VTL Y + +L+ FD+ +
Sbjct: 179 ISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIR 238
Query: 285 RILLSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
+ LT G+ I KV + DG K V ++ + V+ A+ +
Sbjct: 239 EEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLD-----VDVVMMAIGRIPR 293
Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERL 403
L L ++GV + K V +E +T+V NI+A+G I + +A +++ +
Sbjct: 294 TNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDIT-DRLMLTPVAINEGAALVDTV 352
Query: 404 YGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLL 463
+G + + D++ + V GT G+ EE AAK + + +Y SS+ PL
Sbjct: 353 FGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEK--VAVYMSSFT-------PL- 402
Query: 464 PENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLAL 523
+ + K+V VLG+H++G +I + L
Sbjct: 403 -------------MHNISGSK-YKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCL 448
Query: 524 RKFLTKAELDGT 535
R ++ T
Sbjct: 449 RLNAKISDFYNT 460
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 177 bits (452), Expect = 9e-50
Identities = 88/408 (21%), Positives = 166/408 (40%), Gaps = 76/408 (18%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKLS--------------NRSVTGFNFLLAV--ERRCLPE 222
L +D+ A+F + + I + + G N L+AV + P
Sbjct: 99 LSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPV 158
Query: 223 PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVY-SRRLLKHFDQ 281
IS+D+ F + K ++G +AVE+ + LG+ + R+L+ FD+
Sbjct: 159 KGIENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDE 217
Query: 282 EMVRILLSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEK 340
++ +L + + K ++I + ++ D + H + F V+ + +
Sbjct: 218 SVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSI---HLSDGRIYEH-FDHVIYCVGR 273
Query: 341 KFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG--------------------- 379
D L L + V+ Y+V +E +TSV NI+AVG
Sbjct: 274 SPDTENLKLEKLNVETNNN-YIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYN 332
Query: 380 ------------GIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFG 427
+ +A + RL+ +RL+ + + +Y +P V+ G
Sbjct: 333 EERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFSHPPIG 392
Query: 428 TVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQ 487
T+G+SEEAA ++YG + + IY+S + + + PE +
Sbjct: 393 TIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPEL-------------------KE 433
Query: 488 NNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSLALRKFLTKAELDGT 535
++KLVC+ E + G+H+IG N ++ G+++AL+ TK + D T
Sbjct: 434 KTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDET 481
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 127 bits (320), Expect = 1e-31
Identities = 78/384 (20%), Positives = 127/384 (33%), Gaps = 53/384 (13%)
Query: 176 MRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV--ERRCLPEP---RNSALIS 230
+ + I+ A + HT++ + + N +LAV L P
Sbjct: 143 QSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPGVNAKGVFDH 202
Query: 231 ADDLFRLGAWPGKTL-VLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILL 288
A + L PG T+ V+GGS AVE N G ++ + L D E +L
Sbjct: 203 ATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVL 262
Query: 289 SSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347
+ + G+ I + ++ +G + E + + +
Sbjct: 263 DRMKEQGMEIISGSNVTRIEEDANGRV--------------QAVVAMTPNGEMRIETDFV 308
Query: 348 -----------NL-HHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAIS 395
L +G+D+ K V+ NE QTSV N++AVG ++ G P A S
Sbjct: 309 FLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGG-PMEMFKARKS 367
Query: 396 ARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTF 455
+ G + P + E +GM EE A A G I P
Sbjct: 368 GCYAARNVMG-EKISYTPKNYPDFLHTHYEVSFLGMGEEEAR----AAGHEIVTIKMPPD 422
Query: 456 DNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNN----FVKLVCLKGGERVLGIHVIGQN 511
V L +R + F K+V +VLG H +G
Sbjct: 423 ---------TENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYG 473
Query: 512 VAGMIFGYSLALRKFLTKAELDGT 535
++ +++ LT EL
Sbjct: 474 AKDAFQYLNVLIKQGLTVDELGDM 497
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 114 bits (288), Expect = 1e-27
Identities = 71/321 (22%), Positives = 125/321 (38%), Gaps = 25/321 (7%)
Query: 180 KALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLPEP--RNSALIS 230
I +V A F + ++ + R V L+A P P + S +
Sbjct: 106 GNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWT 165
Query: 231 ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSS 290
+ + P + V+G S++A+E+A LG VT++ L D + + ++
Sbjct: 166 STEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAA 225
Query: 291 LTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLH 350
G+ + + S M G E AD ++ A + + +L L
Sbjct: 226 FRAEGIEV---LEHTQASQVAHMDGEFVLTTTHGELRADK---LLVATGRTPNTRSLALD 279
Query: 351 HIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQL 410
GV + + +V ++ +TS NI+A G +P +AA + + G D
Sbjct: 280 AAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCT-DQPQFVYVAAAAGTRAAINMTG-GDAA 337
Query: 411 MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNL---LDPLLPENF 467
+D + +P VV D + TVG SE A DG+ + DN+ L F
Sbjct: 338 LDLTAMPAVVFTDPQVATVGYSEAEAH----HDGIETDSRTLT-LDNVPRALANFDTRGF 392
Query: 468 VKLVCLKGGERVLGIHVIGQN 488
+KLV +G R++G+ +
Sbjct: 393 IKLVIEEGSHRLIGVQAVAPE 413
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 101 bits (253), Expect = 6e-23
Identities = 67/371 (18%), Positives = 126/371 (33%), Gaps = 49/371 (13%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKLSNR-----------SVTGFNFLLAV--ERRCLP--EP 223
L ++G+ ++ + +R L+A R LP +P
Sbjct: 105 LLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQP 164
Query: 224 RNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQE 282
+++ L+ L A P +V+G + E LGVPVT+V +L + D +
Sbjct: 165 DGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDAD 224
Query: 283 MVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPF-ADVFKTVVNAMEKK 341
+L S + GV + + S GV + +
Sbjct: 225 AALVLEESFAERGVRLFKNA--RAASVTRTGAGVL-VTMTDGRTVEGSH---ALMTIGSV 278
Query: 342 FDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIE 401
+ + L L +G+ + + +Y+ + +T I+A G G AS+AA+ R+ +
Sbjct: 279 PNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCT-GLLPLASVAAMQGRIAMY 337
Query: 402 RLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLLDP 461
G + + V E VG+ + A + P N
Sbjct: 338 HALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSVID----AGSVAARTIMLPLRTN---- 389
Query: 462 LLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGYSL 521
++ G FVK+ C + V+G V+ + +I ++
Sbjct: 390 -------------ARAKMSE-MRHG---FVKIFCRRSTGVVIGGVVVAPIASELILPIAV 432
Query: 522 ALRKFLTKAEL 532
A++ +T EL
Sbjct: 433 AVQNRITVNEL 443
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 93.7 bits (234), Expect = 1e-20
Identities = 76/328 (23%), Positives = 139/328 (42%), Gaps = 38/328 (11%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKL--SNRSVTGFNFLLAV--ERRCLP--EPRNSALISAD 232
K GI + A F + + + + + L+A P + ++++
Sbjct: 99 FKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVVTST 158
Query: 233 DLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSL 291
+ P + +V+GG ++ +E+ + LG V ++ Y R+L D E+ R
Sbjct: 159 EALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVF 218
Query: 292 TKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPF-ADVFKTVVNAMEKKFDFAALNLH 350
K G++I+ V +V + KG R E E AD V+ A+ ++ L+L
Sbjct: 219 KKQGLTIRTGV--RVTAVVPEAKGAR-VELEGGEVLEADR---VLVAVGRRPYTEGLSLE 272
Query: 351 HIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----KPNNASMAAISARLIIERLYG 405
+ G+ ++ + +E +T V +I+A+G +V G K AS I+A +E +
Sbjct: 273 NAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHK---ASEEGIAA---VEHMVR 326
Query: 406 MQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN-----LLD 460
+DY +P VV E VG +EE K A G+ +P + + +
Sbjct: 327 -GFGHVDYQAIPSVVYTHPEIAAVGYTEE-ELK---AQGIPYKVGKFPYSASGRARAMGE 381
Query: 461 PLLPENFVKLVCLKGGERVLGIHVIGQN 488
E F+K++ +R+LG+H IG
Sbjct: 382 ---TEGFIKVLAHAKTDRILGVHGIGAR 406
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 89.2 bits (222), Expect = 4e-19
Identities = 63/376 (16%), Positives = 117/376 (31%), Gaps = 61/376 (16%)
Query: 180 KALGIDIVRTAAAFTNPHTIKL-SNRSVTGFNFLLAV--ERRCLP--EPRNSALISADDL 234
D +R A F + HT+++ + V ++A S L++ D+L
Sbjct: 108 SFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDNL 167
Query: 235 FRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTK 293
F L P V G ++ +E+ L+ LGV V + S + D+EM R + +
Sbjct: 168 FELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNE 227
Query: 294 AGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF--------- 344
+ I D ++ V + + F
Sbjct: 228 EFYFDAKARVISTIEKEDAVE---------------VIYFDKSGQKTTESFQYVLAATGR 272
Query: 345 ----AALNLHHIGVDIKKKSYVVCNEKD-QTSVGNIFAVGGIVHGKPNNASMAAISARLI 399
L L + +++ KK+ + +E QTSV +IF G + AA ++
Sbjct: 273 KANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNT-LTLLHEAADDGKVA 331
Query: 400 IERLYGM-QDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYK-SSYPTFDN 457
VV + + +VG+S +Y Y
Sbjct: 332 GTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQ 391
Query: 458 LLDPLLPENFVKLVCLKGGERVLGIHVIGQNN-FVKLVCLKGGERVLGIHVIGQNVAGMI 516
G R V+G+N + + + LG + G +
Sbjct: 392 -----------------G--RSR---VMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIG 429
Query: 517 FGYSLALRKFLTKAEL 532
+ A ++ +T +
Sbjct: 430 HLLAWARQQQMTVQAM 445
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 86.8 bits (216), Expect = 2e-18
Identities = 69/319 (21%), Positives = 129/319 (40%), Gaps = 24/319 (7%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV--ERRCLPE-PRNSALISADDLF 235
LK G+ +V A + +++ + + + LLA LP P +IS+ +
Sbjct: 106 LKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLGGPVISSTEAL 165
Query: 236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKA 294
A P +V+GG + +E+ LG V++V R+L +D E+ + SL K
Sbjct: 166 APKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKL 225
Query: 295 GVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGV 354
G+++ + V +G AD V+ A+ ++ NL + +
Sbjct: 226 GIALH--LGHSVEGYENGCLLANDGKGGQLRLEADR---VLVAVGRRPRTKGFNLECLDL 280
Query: 355 DIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYS 414
+ + + +E+ QTS+ N++A+G + P A A ++ E + G + + +
Sbjct: 281 KMNGAAIAI-DERCQTSMHNVWAIGDVAGE-PMLAHRAMAQGEMVAEIIAGKARR-FEPA 337
Query: 415 FLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN-----LLDPLLPENFVK 469
+ V D E VG + E A+ GL + +P N L FV+
Sbjct: 338 AIAAVCFTDPEVVVVGKTPEQAS----QQGLDCIVAQFPFAANGRAMSLESK---SGFVR 390
Query: 470 LVCLKGGERVLGIHVIGQN 488
+V + +LG +G
Sbjct: 391 VVARRDNHLILGWQAVGVA 409
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 86.0 bits (214), Expect = 3e-18
Identities = 80/323 (24%), Positives = 147/323 (45%), Gaps = 24/323 (7%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKLSN----RSVTGFNFLLAV--ERRCLPE-PRNSALISA 231
LK ++IV+ A F + +T+++ N ++ T N ++A LP ++ ++ +
Sbjct: 101 LKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILDS 160
Query: 232 DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSS 290
LG P +V+GG + +E+ G VT++ + +L F+++M I+
Sbjct: 161 TGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKR 220
Query: 291 LTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLH 350
L K GV + + + GV + + E V+ + ++ + L L
Sbjct: 221 LKKKGVEVVTNA--LAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLE 278
Query: 351 HIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQL 410
IG+ + + + +++ +TSV NIFA+G IV G P A A+ ++ E + G
Sbjct: 279 QIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPG-PALAHKASYEGKVAAEAIAGHPSA- 336
Query: 411 MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN-----LLDPLLPE 465
+DY +P VV D E +VG E+ A +G+ + + +P N L D +
Sbjct: 337 VDYVAIPAVVFSDPECASVGYFEQQAK----DEGIDVIAAKFPFAANGRALALND---TD 389
Query: 466 NFVKLVCLKGGERVLGIHVIGQN 488
F+KLV K ++G +IG N
Sbjct: 390 GFLKLVVRKEDGVIIGAQIIGPN 412
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 85.3 bits (212), Expect = 6e-18
Identities = 72/333 (21%), Positives = 140/333 (42%), Gaps = 42/333 (12%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLP-----EPRNS 226
+KA G+ + +++ S++ + N +LA + +P +
Sbjct: 109 IKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDV-- 166
Query: 227 ALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVR 285
++ + PGK V+G ++ +E+ + LG VT++ + L D+++ +
Sbjct: 167 -IVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAK 225
Query: 286 ILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA 345
LTK G+ I +V + K V +++ + F ++ A+ ++
Sbjct: 226 EAQKILTKQGLKILLGA--RVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTT 283
Query: 346 ALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----KPNNASMAAISARLII 400
L GV + ++ ++ ++ TSV ++A+G +V G K AS +
Sbjct: 284 DLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHK---ASEEGVVV---A 337
Query: 401 ERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN--- 457
ER+ G M+Y +P V+ E VG +E+ A K A+G+ I +P +
Sbjct: 338 ERIAG-HKAQMNYDLIPAVIYTHPEIAGVGKTEQ-ALK---AEGVAINVGVFPFAASGRA 392
Query: 458 --LLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
D FVK++ +RVLG+HVIG +
Sbjct: 393 MAAND---TAGFVKVIADAKTDRVLGVHVIGPS 422
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 84.1 bits (209), Expect = 1e-17
Identities = 79/373 (21%), Positives = 144/373 (38%), Gaps = 56/373 (15%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLPE-PRNSALIS 230
+K I + F + +T+ + SVT N ++A R +P ++ +++
Sbjct: 101 MKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVVT 160
Query: 231 ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLS 289
++ P ++ G + +E L GV VT+V + R L + D ++ + +
Sbjct: 161 YEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEK 220
Query: 290 SLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESK---EPF-ADVFKTVVNAMEKKFDFA 345
K GV+I KV S DG V + A+ V+ A+ +
Sbjct: 221 QFKKLGVTILTAT--KVESIADGGSQVT-VTVTKDGVAQELKAEK---VLQAIGFAPNVE 274
Query: 346 ALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----KPNNASMAAISARLII 400
L GV + + + ++ +T+VG+I+A+G + A + A
Sbjct: 275 GYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHV---AEAQGVVA---A 328
Query: 401 ERLYGMQDQ-LMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNLL 459
E + G + L D+ LP + G++E+ A +G + + +P N
Sbjct: 329 ETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQAR----NEGYDVVVAKFPFTAN-- 382
Query: 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGY 519
+G G FVKLV +LG H++G +VA ++
Sbjct: 383 ---------------AKAHGVG-DPSG---FVKLVADAKHGELLGGHLVGHDVAELLPEL 423
Query: 520 SLALRKFLTKAEL 532
+LA R LT +EL
Sbjct: 424 TLAQRWDLTASEL 436
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 84.1 bits (209), Expect = 2e-17
Identities = 80/340 (23%), Positives = 145/340 (42%), Gaps = 54/340 (15%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLP--EPRNSALI 229
K + V+ F +P I + N V G + ++A + + LP ++
Sbjct: 106 FKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIV 165
Query: 230 SADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILL 288
S+ L P K +V+G + +E+ + +G VT+V ++ ++ D E+ +
Sbjct: 166 SSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQ 225
Query: 289 SSLTKAGVSIQC-CVIEKVISSFDG----MKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
SL K G+ + + V +S DG ++ G E ADV V+ + +
Sbjct: 226 RSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIE--ADV---VLVSAGRTPF 280
Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----KPNNASMAAISARL 398
+ LNL IGV+ K ++ NE+ T+V ++A+G ++ G K A ++
Sbjct: 281 TSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHK---AEEDGVAC-- 335
Query: 399 IIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDNL 458
+E L G +DY +P VV + E +VG +EE K G + Y+ F
Sbjct: 336 -VEYLAGKVGH-VDYDKVPGVVYTNPEVASVGKTEE-QVKETGVE----YRVG--KF--- 383
Query: 459 LDPLL----------PENFVKLVCLKGGERVLGIHVIGQN 488
P + E VK++ K +++LG+H++ N
Sbjct: 384 --PFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPN 421
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 83.7 bits (208), Expect = 2e-17
Identities = 75/348 (21%), Positives = 128/348 (36%), Gaps = 68/348 (19%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLP-------EPR 224
K ID + + + + + N ++A + +P E
Sbjct: 125 FKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEKT 184
Query: 225 NSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEM 283
++S+ L P +V+GG ++ +E+ + LG VT+V + +L D E+
Sbjct: 185 ---IVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEV 241
Query: 284 VRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
+ L LTK G+ + KV + G + F+ V D
Sbjct: 242 AKQLQRMLTKQGIDFKLGA--KVTGAVKSGDGAKV-----------TFEPVKGGEATTLD 288
Query: 344 F-------------AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----K 385
L L GV + + V + QTS+ ++A+G +V G K
Sbjct: 289 AEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPMLAHK 348
Query: 386 PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGL 445
A ++ E + G ++Y +P VV E +VG +EE K A G+
Sbjct: 349 ---AEDEGVAV---AEIIAGQAGH-VNYDVIPGVVYTQPEVASVGKTEE-ELK---AAGV 397
Query: 446 VIYKSSYPTFDN-----LLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
+P N +L + FVK++ K +RVLG H+IG
Sbjct: 398 AYKIGKFPFTANGRARAMLQ---TDGFVKILADKETDRVLGGHIIGFG 442
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 81.4 bits (202), Expect = 1e-16
Identities = 71/348 (20%), Positives = 120/348 (34%), Gaps = 68/348 (19%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLP-----EPRNS 226
K + V T + + + + N L+A E P E
Sbjct: 107 FKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDT-- 164
Query: 227 ALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLL-KHFDQEMV 284
++S+ L P K +V+G ++ VE+ + LG VT V + + D E+
Sbjct: 165 -IVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEIS 223
Query: 285 RILLSSLTKAGVSIQCCV-IEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFD 343
+ L K G + + DG V + +
Sbjct: 224 KNFQRILQKQGFKFKLNTKVTGATKKSDGKIDV-------------SIEAASGGKAEVIT 270
Query: 344 F-------------AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----K 385
L L +G+++ + + N + QT + NI+A+G +V G K
Sbjct: 271 CDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHK 330
Query: 386 PNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGL 445
A I +E + G +DY+ +P V+ E VG SEE K +G+
Sbjct: 331 ---AEDEGIIC---VEGMAG-GAVHIDYNCVPSVIYTHPEVAWVGKSEE-QLK---EEGI 379
Query: 446 VIYKSSYPTFDN-----LLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
+P N D + VK++ K +RVLG H++G
Sbjct: 380 EYKVGKFPFAANSRAKTNAD---TDGMVKILGQKSTDRVLGAHILGPG 424
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 80.6 bits (200), Expect = 2e-16
Identities = 75/333 (22%), Positives = 132/333 (39%), Gaps = 46/333 (13%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAV--ERRCLPE-PRNSALISADDLF 235
LK G++++R A P +++ + +LA E L P + +
Sbjct: 103 LKGNGVELLRGFARLVGPKEVEVGGERYGAKSLILATGSEPLELKGFPFGEDVWDSTRAL 162
Query: 236 RLGAW-PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTK 293
++ P + LV+GG + +E+ LG VTL+ Y +L D E +L +L K
Sbjct: 163 KVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEK 222
Query: 294 AGVSIQCCV----IEK----VISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFA 345
G+ ++ EK + + +G E +E D V+ A+ +K
Sbjct: 223 EGIRVRTKTKAVGYEKKKDGLHVRLEPAEG-----GEGEEVVVDK---VLVAVGRKPRTE 274
Query: 346 ALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----KPNNASMAAISARLII 400
L L GV + ++ ++ N + +TSV ++A+G K A + A
Sbjct: 275 GLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPLLAHK---AMREGLIA---A 328
Query: 401 ERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSSYPTFDN--- 457
E G DY +P VV E+ VG++EE A G + +P +
Sbjct: 329 ENAAGKDSA-FDYQ-VPSVVYTSPEWAGVGLTEEEAK----RAGYKVKVGKFPLAASGRA 382
Query: 458 --LLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
L E VK+V + + +LG+ ++G
Sbjct: 383 LTLGG---AEGMVKVVGDEETDLLLGVFIVGPQ 412
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 79.5 bits (197), Expect = 5e-16
Identities = 66/347 (19%), Positives = 132/347 (38%), Gaps = 60/347 (17%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKL---------------SNRSVTGFNFLLAV--ERRCLP 221
K+ +D+++ F +PH +++ + V N ++A LP
Sbjct: 105 AKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLP 164
Query: 222 E-PRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHF 279
P + +I + L PGK L++GG ++ +E+ + LG + +V L++
Sbjct: 165 FIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA 224
Query: 280 DQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAME 339
D+++V++ +I K ++ GV V NA +
Sbjct: 225 DRDLVKVWQKQNEYRFDNIMVNT--KTVAVEPKEDGVY------------VTFEGANAPK 270
Query: 340 KKFDF-------------AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKP 386
+ + ++ GV + + ++ +++ +T+V +I+A+G IV P
Sbjct: 271 EPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQ-P 329
Query: 387 NNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLV 446
A A + E G + D +P V E VG +E +A A
Sbjct: 330 MLAHKAVHEGHVAAENCAGHKAY-FDARVIPGVAYTSPEVAWVGETELSAK----ASARK 384
Query: 447 IYKSSYPTFDN-----LLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
I K+++P + + F KL+ R++G ++G N
Sbjct: 385 ITKANFPWAASGRAIANGC---DKPFTKLIFDAETGRIIGGGIVGPN 428
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 79.5 bits (197), Expect = 5e-16
Identities = 66/342 (19%), Positives = 128/342 (37%), Gaps = 57/342 (16%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLP-----EPRNS 226
K + + +F H+I++ + ++A E LP E
Sbjct: 103 FKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKV-- 160
Query: 227 ALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVR 285
++S+ L P +V+GG ++ +E+ + LG VT+V ++ R D+++
Sbjct: 161 -VLSSTGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTN 219
Query: 286 ILLSSLTKA-GVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDF 344
L+ +L K + KV+ + V + N +
Sbjct: 220 ALVGALAKNEKMKFMTST--KVVGGTNNGDSVS------------LEVEGKNGKRETVTC 265
Query: 345 -------------AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASM 391
L L I V ++ +V + +TS+ +++A+G +V P A
Sbjct: 266 EALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDVVDKGPMLAHK 325
Query: 392 AAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYKSS 451
A E L G + ++Y +P V+ E +VG SE+ K +G+
Sbjct: 326 AEDEGVACAEILAG-KPGHVNYGVIPAVIYTMPEVASVGKSED-ELK---KEGVAYKVGK 380
Query: 452 YPTFDN-----LLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
+P N + + FVK++ K +R+LG+H++
Sbjct: 381 FPFNANSRAKAVST---EDGFVKVLVDKATDRILGVHIVCTT 419
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 79.5 bits (197), Expect = 6e-16
Identities = 67/353 (18%), Positives = 129/353 (36%), Gaps = 72/353 (20%)
Query: 179 LKALGIDIVRTAAAFTNPHTIK-----------LSNRSVTGFNFLLAV--ERRCLP---- 221
K + + +F + I+ + + N ++A E P
Sbjct: 106 FKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEI 165
Query: 222 -EPRNSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHF 279
E + ++S+ L P + ++GG ++ +E+ + + LG VT+V + ++
Sbjct: 166 DEEK---IVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASM 222
Query: 280 DQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADV-FKTVVNAM 338
D E+ + L K G+ + K V + ++ +
Sbjct: 223 DGEVAKATQKFLKKQGLDFKL-----------STK-VISAKRNDDKNVVEIVVEDTKTNK 270
Query: 339 EKKFDF-------------AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG- 384
++ + A L IG+++ K+ +V +++ + +I VG + G
Sbjct: 271 QENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP 330
Query: 385 ----KPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAAKVY 440
K A I+A +E L ++Y+ +P V+ E VG +EE K
Sbjct: 331 MLAHK---AEEEGIAA---VEMLKT-GHGHVNYNNIPSVMYSHPEVAWVGKTEE-QLK-- 380
Query: 441 GADGLVIYKSSYPTFDN-----LLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
G+ +P N D E FVK++ ER+LG H+IG N
Sbjct: 381 -EAGIDYKIGKFPFAANSRAKTNQD---TEGFVKILIDSKTERILGAHIIGPN 429
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 69.9 bits (172), Expect = 6e-13
Identities = 61/347 (17%), Positives = 117/347 (33%), Gaps = 67/347 (19%)
Query: 179 LKALGIDIVRTAAAFTNPHTIKL-----SNRSVTGFNFLLAV--ERRCLPEP-------R 224
+ + + +P + + ++A E L P
Sbjct: 99 SQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTS 158
Query: 225 NSALISADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHF-DQE 282
+ +L P +++G + +EIA+ +GV ++ R L DQ+
Sbjct: 159 DDIFGYKTSFRKL---PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQD 215
Query: 283 MVRILLSSL-----TKAGV-SIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVN 336
+V LLS L + V ++ ++ + G K F + VV
Sbjct: 216 IVNTLLSILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDG------SKKSIFTNS---VVL 266
Query: 337 AMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHG-----KPNNASM 391
A ++ IG+ I K VV +E +T++ N+FA G A
Sbjct: 267 AAGRR-PVIPEGAREIGLSISKTGIVV-DETMKTNIPNVFATGDANGLAPYYHA---AVR 321
Query: 392 AAISARLIIERLYGMQDQL--MDYSFLPVVVRGDVEFGTVGMSEEAAAKVYGADGLVIYK 449
+I+A + + +D +PV + VG+ A + G+ I +
Sbjct: 322 MSIAA---ANNIMANGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKA-R---KMGIEIVE 374
Query: 450 SSYP--------TFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQN 488
+ Y + E +KL+ +G R++G +IG +
Sbjct: 375 AEYNMEEDVSAQIYGQ------KEGVLKLIFERGSMRLIGAWMIGVH 415
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 69.4 bits (171), Expect = 7e-13
Identities = 50/286 (17%), Positives = 102/286 (35%), Gaps = 73/286 (25%)
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVSIQ 299
K LV+G +++E+ L G+ TL+ S ++ K D +M + +L L K +
Sbjct: 148 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPY- 206
Query: 300 CCVIEKVISSFDGMKGVR---------------GFHPESKEPFADVFKTVVNAMEKKFDF 344
+ + I++ +G + G HP S F
Sbjct: 207 --RLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNS-------------------KF 245
Query: 345 AALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAIS 395
+ + +K ++ N+K +T+V NI+A+G P + A A +
Sbjct: 246 IE----SSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRA 301
Query: 396 ARLIIERLYGMQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIYKS 450
A ++ E++ G F +V+ D F +VG+ + + + + +
Sbjct: 302 ASIVAEQIAGNDTI----EFKGFLGNNIVKFFDYTFASVGVKPNELKQ-FDYKMVEVTQG 356
Query: 451 S----YPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
+ YP L +++ ++L +G+ K
Sbjct: 357 AHANYYPGNSPL--------HLRVYYDTSNRQILRAAAVGKEGADK 394
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 69.2 bits (170), Expect = 1e-12
Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 51/277 (18%)
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVSIQ 299
P V+GG + VE+ L G+ VTLV + +++ D EM + + V +
Sbjct: 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVEL- 245
Query: 300 CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM----EKKFDFAALNLHHIGVD 355
V E + + + V S D+ ++ A+ E G+
Sbjct: 246 --VFEDGVDALEENGAVVRLKSGSVIQ-TDM---LILAIGVQPESSL------AKGAGLA 293
Query: 356 IKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAISARLIIERLYGM 406
+ + + NEK QTS +I+A+G V A A R++ + ++G
Sbjct: 294 LGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGH 353
Query: 407 QDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIYKSS------YPTF 455
D + V + D+ T G++E+ + V++ + YP
Sbjct: 354 TDS----LYKGTLGTSVAKVFDLTVATTGLNEKILKR-LNIPYEVVHVQANSHAGYYPNA 408
Query: 456 DNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
+ +KL+ K ++ G +G++ K
Sbjct: 409 TPV--------LIKLIFNKDSGKIYGAQTLGRDGVDK 437
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 66.4 bits (163), Expect = 8e-12
Identities = 46/277 (16%), Positives = 98/277 (35%), Gaps = 51/277 (18%)
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRILLSSLTKAGVSIQ 299
++GG + +E+A T LG V ++ + + +D +M + K + I
Sbjct: 186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEI- 244
Query: 300 CCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM----EKKFDFAALNLHHIGVD 355
+ + + +F G + V + AD+ V+ ++ F L +
Sbjct: 245 --LTNENVKAFKGNERVEAVETDKGTYKADL---VLVSVGVKPNTDF------LEGTNIR 293
Query: 356 IKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAISARLIIERLYGM 406
K + N QT+V +++A G ++ ++ + A RL +
Sbjct: 294 TNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLD- 352
Query: 407 QDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIYKSS------YPTF 455
+F +++ ++ G++E+ A + S YP
Sbjct: 353 ----KRRAFKGTLGTGIIKFMNLTLARTGLNEKEAKG-LHIPYKTVKVDSTNMAGYYPNA 407
Query: 456 DNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
L ++KL+ +++LG VIG+ K
Sbjct: 408 KPL--------YLKLLYRSDTKQLLGGQVIGEEGVDK 436
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 66.5 bits (163), Expect = 9e-12
Identities = 48/299 (16%), Positives = 101/299 (33%), Gaps = 52/299 (17%)
Query: 232 DDLFRLGAW-----PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVR 285
D+ R+ V+GG + +E+ +L+ LG+ TL+ + +++ D+EM
Sbjct: 137 PDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAG 196
Query: 286 ILLSSLTKAGVSIQC-CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV--NAMEKKF 342
++ GV ++ + +V ++ ++ N +
Sbjct: 197 FAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLET 256
Query: 343 DFAALN---------LHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPN 387
D + G+ I + + N QTS I+AVG V G+
Sbjct: 257 DLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQAC 316
Query: 388 N---ASMAAISARLIIERLYGMQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKV 439
A A R+ + ++G + + + + D+ G G +E+ +
Sbjct: 317 LVPLAGPANRQGRMAADNMFG-----REERYQGTQGTAICKVFDLAVGATGKNEKQLKQ- 370
Query: 440 YGADGLVIYKSS------YPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
G +Y + YP + + KL+ + G +G++ K
Sbjct: 371 AGIAFEKVYVHTASHASYYPGAEVV--------SFKLLFDPVKGTIFGAQAVGKDGIDK 421
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 3e-11
Identities = 73/458 (15%), Positives = 135/458 (29%), Gaps = 124/458 (27%)
Query: 67 VLREENARAERYLNARGDRFAVLYLD--RIGDEGILLE--EELKRQTNQRRDELQERGSH 122
+ + + + F + +L+ +LE ++L Q + + S+
Sbjct: 165 WVALDVCLSYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 123 LSFRK---KRRLYYPVAMSDLELEQDSTSALNVTIRN-WNAATKLIKRFCIRAK------ 172
+ R + L L + + L V + N NA K F + K
Sbjct: 223 IKLRIHSIQAEL------RRLLKSKPYENCLLV-LLNVQNA--KAWNAFNLSCKILLTTR 273
Query: 173 ----NDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRC--LPE---- 222
D + I + + T L L ++ R LP
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---------LLKYLDCRPQDLPREVLT 324
Query: 223 --PRNSALISA---DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLK 277
PR ++I+ D L W V L + I ++LN L P R++
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTI-IESSLNVLE-PAEY---RKMFD 376
Query: 278 HFD--QEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVV 335
I L +I + D M V H S
Sbjct: 377 RLSVFPPSAHIPTILL---------SLIWFDVIKSDVMVVVNKLHKYS------------ 415
Query: 336 NAMEKKFDFAALNLHHIGVDIKKK-------------SYVVCNEKDQTSVGNIFAVGGIV 382
+EK+ + +++ I +++K K Y + D + +
Sbjct: 416 -LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 383 -----HGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEAAA 437
H K N ER+ + +D+ FL +R D + A+
Sbjct: 475 SHIGHHLK--NIEHP--------ERMTLFRMVFLDFRFLEQKIRHD------STAWNASG 518
Query: 438 KVYG--ADGLVIYKS----SYPTFDNLLDPLLPENFVK 469
+ L YK + P ++ L++ +L +F+
Sbjct: 519 SILNTLQQ-LKFYKPYICDNDPKYERLVNAIL--DFLP 553
Score = 46.8 bits (110), Expect = 2e-05
Identities = 52/328 (15%), Positives = 92/328 (28%), Gaps = 67/328 (20%)
Query: 39 DLLPSFETPPAYISRLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEG 98
D+L FE A++ ++ + ++L +E + + ++ L L
Sbjct: 20 DILSVFE--DAFVDNFDCKD-VQDMPKSILSKEEI--DHIIMSKDAVSGTLRL-----FW 69
Query: 99 ILLEEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALN---VTIR 155
LL + QE + R+ Y MS ++ EQ S + + R
Sbjct: 70 TLLSK-------------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 156 N--WNAATKLIKRFCIRAK-----NDSMRELK-ALGIDI---------VRTAAAFTNPHT 198
+ +N K R + ++ EL+ A + I +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 199 IKLSNRSVTGFNFLLAVERRCLPEPRNSALISADDLFRLGAWPGKTLVLGGS---LMAVE 255
+ + F L ++ PE + L L + S L
Sbjct: 177 QCKMDFKI----FWLNLKNCNSPE---TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 256 IAATLNFL----GVPVTL-----VYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKV 306
I A L L L V + + F+ +ILL++ K
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTH 288
Query: 307 ISSFDGMKGVRGFHP-ESKEPFADVFKT 333
IS P E K
Sbjct: 289 ISLDHHSM---TLTPDEVKSLLLKYLDC 313
Score = 44.5 bits (104), Expect = 9e-05
Identities = 50/373 (13%), Positives = 102/373 (27%), Gaps = 108/373 (28%)
Query: 6 DFLSKSQTSGLNAIHAIPSFHEAKTCSPTAS----SCDLLPS--FETPPAYISRLSYENR 59
DFLS + T+ ++ H + + S LP T P +S
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS------- 331
Query: 60 ILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQER 119
+I +R+ A + + + D+ L I +E L
Sbjct: 332 -II--AESIRDGLATWDNWKHVNCDK-----LTTI------IESSLN------------- 364
Query: 120 GSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTI----RNWNA---------ATKLIKR 166
L + R+++ L + S ++ W KL K
Sbjct: 365 --VLEPAEYRKMFD-----RLSVFPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 167 FCI-RAKNDSMRELKALGIDIVRTAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEPRN 225
+ + +S + ++ +++ H V +N + L P
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYNIPKTFDSDDLIPPYL 469
Query: 226 SA---------LISAD-----DLFRLG----AWPGKTLVLGGSLMAVEIAATLNFLGVPV 267
L + + LFR+ + + + + + LN L
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-GSILNTLQ--Q 526
Query: 268 TLVYSRRLLKH--FDQEMVRILLSSLTKAGVSI----QCCVIEKVISSFDGMKGVRGFHP 321
Y + + + +V +L L K ++ ++
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR------------IALMA 574
Query: 322 ESKEPFADVFKTV 334
E + F + K V
Sbjct: 575 EDEAIFEEAHKQV 587
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 63.7 bits (156), Expect = 5e-11
Identities = 45/288 (15%), Positives = 85/288 (29%), Gaps = 54/288 (18%)
Query: 232 DDLFRLGAW---PGKTLVLGGSLMAVEIAATLNFLGVPVTLV--YSRRLLKHFDQEMVRI 286
V+G + +E L + V + L K+FD+EMV
Sbjct: 135 SGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAE 194
Query: 287 LLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM----EKKF 342
+ SL K V E+ + + +E D + A+ + +
Sbjct: 195 VQKSLEKQAVIF---HFEETVLGIEETANGIVLETSEQEISCDS---GIFALNLHPQLAY 248
Query: 343 DFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAA 393
+ + + QTSV N+FA+G + + A
Sbjct: 249 -LDK------KIQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAV 301
Query: 394 ISARLIIERLYGMQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIY 448
+ ++ L + F+ + GD + G++E + I
Sbjct: 302 RTGLVVANNLEE-----KTHRFIGSLRTMGTKVGDYYLASTGLTETEGLF-FPQTLASII 355
Query: 449 KSS----YPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
+ KL+ K +RVLG + +NN ++
Sbjct: 356 VRQPAPPLQHGTEI--------LGKLIYDKVTQRVLGAQLCSKNNCLE 395
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 60.6 bits (148), Expect = 6e-10
Identities = 66/313 (21%), Positives = 117/313 (37%), Gaps = 66/313 (21%)
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLV--YSRRLLKHFDQEMVRILLSSLTKAGVSI 298
+++GG + +E+A G VT++ R L + FD+E+ IL L K V++
Sbjct: 148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKK-HVNL 206
Query: 299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM----EKKFDFAALNLHHIGV 354
++++ +G + V ++ E A++ V+ A + +GV
Sbjct: 207 ---RLQEITMKIEGEERVEKVVTDAGEYKAEL---VILATGIKPNIEL------AKQLGV 254
Query: 355 DIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAISARLIIERLYG 405
I + + NEK QTSV N++A G ++ G+ A + + G
Sbjct: 255 RIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAG 314
Query: 406 MQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKV-YGADGLVIYKSSYPTFDNLL 459
+ F V V + DVE G G++E A K Y I S+ P +
Sbjct: 315 -----KELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDVRTAFIKASTRPHY---- 365
Query: 460 DPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLGIHVIGQNVAGMIFGY 519
GG + ++K V R+LG+ V+G ++ I
Sbjct: 366 -------------YPGGREI----------WLKGVVDNETNRLLGVQVVGSDILPRIDTA 402
Query: 520 SLALRKFLTKAEL 532
+ L T +
Sbjct: 403 AAMLMAGFTTKDA 415
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 60.2 bits (147), Expect = 7e-10
Identities = 40/289 (13%), Positives = 88/289 (30%), Gaps = 54/289 (18%)
Query: 231 ADDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV--YSRRLLKHFDQEMVRILL 288
A LF ++G + E+A + V L+ + R L K+FD+E IL
Sbjct: 139 AKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILA 198
Query: 289 SSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPF-ADVFKTVVNAM----EKKFD 343
GV++ V+ +++F+ + + +D+ + + +
Sbjct: 199 KDYEAHGVNL---VLGSKVAAFEEVDDEIITKTLDGKEIKSDI---AILCIGFRPNTEL- 251
Query: 344 FAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAI 394
V + ++ +E +S +IFA G A+ A
Sbjct: 252 LKG------KVAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVR 305
Query: 395 SARLIIERLYGMQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIYK 449
RL+ L + ++ + + G++ A +
Sbjct: 306 QGRLVGLNLTE-----DKVKDMGTQSSSGLKLYGRTYVSTGINTALAKA-NNLKVSEVII 359
Query: 450 SS------YPTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
+ + D + + LV +LG + ++ +
Sbjct: 360 ADNYRPEFMLSTDEV--------LMSLVYDPKTRVILGGALSSMHDVSQ 400
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 1e-09
Identities = 103/623 (16%), Positives = 176/623 (28%), Gaps = 234/623 (37%)
Query: 49 AYISR---LSY---ENRILI----FTHA-VLREE-----NARAERYLNARGD-------- 84
AY +R LS+ E+ +L+ F A L+E+ E + A D
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGF--AADDEPTTPAEL 60
Query: 85 --RFAVLYLDRIGDEGIL--LEEELKRQTNQ-RRDELQERGSH-----------LSFRKK 128
+F + Y+ + + + ++ L + L+ H + K
Sbjct: 61 VGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 129 RRL---YYP-VAMSDLELEQDSTSALNVTIRNWNAA----TKLIKRF--------CIRAK 172
+ L Y M+ ++ S SAL + A +L+ F
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSAL------FRAVGEGNAQLVAIFGGQGNTDDYF--- 170
Query: 173 NDSMREL----KALGIDIVRTAAAFTNP---HTIKLSNRSVTGFNFLLAVERRCLPEPR- 224
+ +R+L L D+++ +A + T+ G N L +E P
Sbjct: 171 -EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN---PSNTP 226
Query: 225 -----NSALIS------------ADDLFRLGAWPGK--------TLVLGGSLMAVEIAAT 259
S IS LG PG+ T G + AV IA T
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 260 LNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCC---------VIEKVISSF 310
++ + F + + ++ L GV ++E + +
Sbjct: 287 DSW--------------ESFFVSVRKA-ITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 311 DG----MKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLH-------HIGVDIKKK 359
+G M + V V N H I + K
Sbjct: 332 EGVPSPMLSISN------LTQEQVQDYV----------NKTNSHLPAGKQVEISLVNGAK 375
Query: 360 SYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIERLYGMQDQ---------- 409
+ VV G P S+ ++ L + DQ
Sbjct: 376 NLVVS-------------------GPP--QSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 410 LMDYSFLPVVVRGDVEFGTVGMSEEAAAKV---YGADGLVIYKSS-----YPTFD--NL- 458
FLPV F + + A+ + + + Y TFD +L
Sbjct: 415 KFSNRFLPVASP----FHSHLL-VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 459 -LDPLLPENFVKLVCLKGGERV-------LGI-HVI-----GQNNFVKLVC-LKGGERVL 503
L + E V + V H++ G + L K G
Sbjct: 470 VLSGSISERIVDCIIR---LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG---T 523
Query: 504 GIHVIGQNVAGMI-------FGY 519
G+ VI VAG + +G+
Sbjct: 524 GVRVI---VAGTLDINPDDDYGF 543
Score = 57.4 bits (138), Expect = 1e-08
Identities = 77/474 (16%), Positives = 142/474 (29%), Gaps = 151/474 (31%)
Query: 110 NQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRF-- 167
+Q +++ F K P + + T+ +L+ +F
Sbjct: 31 SQLQEQ---------FNKI----LPEPTEGFAADDEPTTPA-----------ELVGKFLG 66
Query: 168 ----CIRAKNDSMRE--LKAL----------GIDIVRTAAAFTNPHTIKLSNRSVTGFNF 211
+ + L G DI AA + L N+
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 212 LLA--VERRCLPEPRNSALISA--DDLFRLGAWPGKTLVLGGSLMAVEIAATLNFLGVPV 267
+ A + +R + NSAL A + +L A + GG G
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVA------IFGGQ-------------GNTD 167
Query: 268 T----L--VYS--RRLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVIS-SFDGMKGVRG 318
L +Y L+ + LS L + + EKV + + ++ +
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAE-TLSELIRTTLDA-----EKVFTQGLNILEWLE- 220
Query: 319 FHPESKEPFADVFKTVVNAMEKKFDFAALNLHHIGVDIKKKSY-VVCNEKDQTSVGNIFA 377
+P + P D ++ + L IGV I+ Y V T G + +
Sbjct: 221 -NPSNT-PDKDYLLSI---------PISCPL--IGV-IQLAHYVVTAKLLGFT-PGELRS 265
Query: 378 V--GGIVHGKPNNASMAAISARLIIERLYGMQDQLMDYSFLPVVVRGDVEFGTVGMSEEA 435
G H + + AI+ E + + + F + VR + +
Sbjct: 266 YLKGATGHSQ-GLVTAVAIAETDSWESFFVSVRKAITVLFF-IGVRCYEAYPNTSLPPSI 323
Query: 436 AAK-VYGADGLVIYKSSYPTFDNLLDPLLP---------ENFVKLVC--LKGGERVLGIH 483
+ +G+ P+ P+L +++V L G++V I
Sbjct: 324 LEDSLENNEGV-------PS------PMLSISNLTQEQVQDYVNKTNSHLPAGKQV-EIS 369
Query: 484 VI-GQNNFVKLVCLKGGERVLGIHVIGQNVAG---MIFGYSLALRKFLTKAELD 533
++ G N V V+G ++G +L LRK + LD
Sbjct: 370 LVNGAKNLV--------------------VSGPPQSLYGLNLTLRKAKAPSGLD 403
Score = 39.6 bits (92), Expect = 0.003
Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 51/165 (30%)
Query: 135 VAMSD-LELEQDSTSALN-VTIRNWNAATKLIKRFCIRAKNDSMRELKALGIDIVRTAAA 192
+++D + +E S + V R + R + N M + I+ R AA+
Sbjct: 1771 ASLADVMSIE----SLVEVVFYRG-MTMQVAVPRDELGRSNYGM-----IAINPGRVAAS 1820
Query: 193 FTNPHTIKLSNR--SVTGF-----NFLLAVERRCLPEPRNSALISADDLFRLGAWPGKTL 245
F+ + R TG+ N+ N +
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNY-------------NV--------------ENQQY 1853
Query: 246 VLGGSLMAVEIAAT-LNFLGVP-VTLVYSRRLLKHFDQEMVRILL 288
V G L A++ LNF+ + + ++ L K E V L
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQKIDII---ELQKSLSLEEVEGHL 1895
Score = 39.3 bits (91), Expect = 0.003
Identities = 51/362 (14%), Positives = 97/362 (26%), Gaps = 163/362 (45%)
Query: 117 QERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIKRFCIRAKNDSM 176
Q GS M ++L + S +A +V WN A ++
Sbjct: 1624 Q--GSQE-----------QGMG-MDLYKTSKAAQDV----WNRA------------DNHF 1653
Query: 177 RELKALGI---DIVRTAAAFTNPHTIKLSNRSVTGF----NFLLAVERRCLPEPRNSALI 229
++ G DIV NP + + G N+ + + +
Sbjct: 1654 KD--TYGFSILDIVIN-----NPVNLTIHFGGEKGKRIRENYSAMIFETIV-----DGKL 1701
Query: 230 SADDLFRLGAWPGKTLVLGGS-------------LMAVEIAATLNFLGVPVTLVYSRRLL 276
+ +F+ + L +E AA L
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF--------------EDL 1747
Query: 277 K-------------HFDQEMVRILLSSL-------TKAGV-SIQCCVIEKVISSFDGMKG 315
K H SL + A V SI+ ++
Sbjct: 1748 KSKGLIPADATFAGH-----------SLGEYAALASLADVMSIE-----------SLVEV 1785
Query: 316 V--RGFHPESKEPFADVFKTVVNAMEK------KFDFAALN------------LHHIGVD 355
V RG T+ A+ + + A+N L ++
Sbjct: 1786 VFYRG-------------MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 356 IKKKSYVVC-----NEKDQTSV--GNIFAV---GGIV-HGKPNNASMAAISARLIIERLY 404
+ K++ + N ++Q V G++ A+ ++ K + + L +E +
Sbjct: 1833 VGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Query: 405 GM 406
G
Sbjct: 1893 GH 1894
Score = 38.5 bits (89), Expect = 0.006
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 30/92 (32%)
Query: 429 VGMSEEAAAKVYGADGLVIYKSSYPTFDNLL---DPLLPENFVKLVCLKGGERVLGIHVI 485
GM G+ +YK+S ++ D + + G +L I
Sbjct: 1629 QGM------------GMDLYKTS-KAAQDVWNRADNHFKDTY--------GFSILDIV-- 1665
Query: 486 GQNNFVKLVCLKGGERVLGIHVIGQNVAGMIF 517
NN V L GGE+ I +N + MIF
Sbjct: 1666 -INNPVNLTIHFGGEKGKRIR---ENYSAMIF 1693
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 59.4 bits (145), Expect = 1e-09
Identities = 47/278 (16%), Positives = 93/278 (33%), Gaps = 53/278 (19%)
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLV--YSRRLLKHFDQEMVRILLSSLTKAGVSI 298
+V+G + +E A G VT++ R L + D+E +L + ++I
Sbjct: 149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITI 208
Query: 299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM----EKKFDFAALNLHHIGV 354
+ + ++G V+ + AD+ VV A+ + +
Sbjct: 209 ---ATGETVERYEGDGRVQKVVTDKNAYDADL---VVVAVGVRPNTAW-LKG------TL 255
Query: 355 DIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAISARLIIERLYG 405
++ + +E +TS ++FAVG N A+ A R ++ L
Sbjct: 256 ELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEE 315
Query: 406 MQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIYKSS------YPT 454
F V + D +F + G++E A K G + + P
Sbjct: 316 -----PVKPFPGVQGSSGLAVFDYKFASTGINEVMAQK-LGKETKAVTVVEDYLMDFNPD 369
Query: 455 FDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
+ KLV ++LG ++ + +
Sbjct: 370 KQKA--------WFKLVYDPETTQILGAQLMSKADLTA 399
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 58.3 bits (142), Expect = 3e-09
Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 52/278 (18%)
Query: 241 PGKTLVLGGSLMAVEIAATLNFLGVPVTLV--YSRRLLKHFDQEMVRILLSSLTKAGVSI 298
+ V+G + VE+A G V L+ L ++D+++ ++ ++ + G+ +
Sbjct: 194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQL 253
Query: 299 QCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAM----EKKFDFAALNLHHIGV 354
+ + G V + E D+ V+ A+ +
Sbjct: 254 ---AFGETVKEVAGNGKVEKIITDKNEYDVDM---VILAVGFRPNTTL-GNG------KI 300
Query: 355 DIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAISARLIIERLYG 405
D+ + + N++ +TS+ ++A+G N AS A + + G
Sbjct: 301 DLFRNGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACG 360
Query: 406 MQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIYKSS------YPT 454
D + V + + + G++ E A + G D V +
Sbjct: 361 -----TDLEGIGVQGSNGISIYGLHMVSTGLTLEKAKR-LGFDAAVTEYTDNQKPEFIEH 414
Query: 455 FDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVK 492
+ + +K+V K R+LG + + +
Sbjct: 415 GNFPV-------TIKIVYDKDSRRILGAQMAAREDVSM 445
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 54.8 bits (133), Expect = 3e-08
Identities = 58/321 (18%), Positives = 113/321 (35%), Gaps = 76/321 (23%)
Query: 241 PGKTLVLGGSLMAVEIA-ATLNFLGVPVTLV--YSRRLLKHFDQEMVRILLSSLTKAGVS 297
K +++GG + +E+A + + G+ T+V + + + + ++L L K V
Sbjct: 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVV 218
Query: 298 IQCCVIEKVISSFDGMKGVRGFHPESKEPF-ADVFKTVVNAM----EKKFDFAALNLHHI 352
+ + + +G G K AD+ V+ A + A
Sbjct: 219 V---HTGEKVVRLEGENGKVARVITDKRTLDADL---VILAAGVSPNTQLARDA------ 266
Query: 353 GVDIKKKSYVVCNEKDQTSVGNIFAVG------GIVHGKPNN---ASMAAISARLIIERL 403
G+++ + ++ + + +TS +IFA G +V GKP SMA R+I L
Sbjct: 267 GLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNL 326
Query: 404 YGMQDQLMDYSFLPV----VVR-GDVEFGTVGMSEEAAAKVYGADGLVIYKSS------Y 452
D +F V+ + G++ E A + G D + ++ Y
Sbjct: 327 AD-----GDATFPGAVGSWAVKLFEGSASGAGLTVEGALR-EGYDAVNVHVEQFDRAHFY 380
Query: 453 PTFDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGERVLG-IHVIGQN 511
P + ++LV + RVLGI G+ + I+ +
Sbjct: 381 PEKTIM--------TLQLVVDRPTRRVLGIQGFS----------TLGDALTARINAV--- 419
Query: 512 VAGMIFGYSLALRKFLTKAEL 532
+ L T ++
Sbjct: 420 --------ATMLASKPTVEDI 432
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 44.1 bits (105), Expect = 5e-05
Identities = 23/175 (13%), Positives = 53/175 (30%), Gaps = 30/175 (17%)
Query: 242 GKTLVLG-GSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQC 300
+++ + + + ++ + Q ++ L+ + +
Sbjct: 147 QPLIIISENEDHTLHMTKLVYNWS-TDLVIATNGNE--LSQT----IMDELSNKNIPVIT 199
Query: 301 CVIEKVISSFDGMKGVRGFHPESKEPFADVF---KTVVNAMEKKFDFAALNLHHIGVDIK 357
I + +K V FH + A F F +G +++
Sbjct: 200 ESIRTLQGEGGYLKKVE-FHSGLRIERAGGFIVPTFFRPN-----QFIE----QLGCELQ 249
Query: 358 KKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNA-------SMAAISA--RLIIERL 403
V ++ +TS NI+ G P++ + AAI+ + ER
Sbjct: 250 SNGTFVIDDFGRTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDITDERF 304
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 41.8 bits (99), Expect = 4e-04
Identities = 37/229 (16%), Positives = 75/229 (32%), Gaps = 49/229 (21%)
Query: 179 LKALGIDIVRTAAAFTNP--HTIKLSNRSVTGFNFLL----AVERRCLPEPRNSA----- 227
+ I+++ + + L++ + + L+ A R L P S
Sbjct: 67 FQDQAIELISDRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRM-LDVPNASLPDVLY 125
Query: 228 LISADDLFRLGAW--PGKTL-VLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKH-FDQE 282
L + D+ L K + V+G + +E AAT G+ V +V + R++ E
Sbjct: 126 LRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPE 185
Query: 283 MVRILLSSLTKAGVSIQCCVIEKVISSFDGMKG-VRGFHPESKEPF-ADVFKTVVNAMEK 340
+ + AG+ + + V G D+ VV
Sbjct: 186 ISSYFHDRHSGAGIRMHY---GVRATEIAAEGDRVTGVVLSDGNTLPCDL---VVVG--- 236
Query: 341 KFDFAALNLHHIGVD----------IKKKSYVVCNEKDQTSVGNIFAVG 379
+GV + + ++ +++ TS +I A+G
Sbjct: 237 -----------VGVIPNVEIAAAAGLPTAAGIIVDQQLLTSDPHISAIG 274
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 41.0 bits (97), Expect = 8e-04
Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 45/173 (26%)
Query: 232 DDLFRLGAW---PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKHFDQEMVRIL 287
D R+ G+ +++GG + +E+A L G V L+ L D+E+ ++
Sbjct: 131 FDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL-GLDEELSNMI 189
Query: 288 LSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL 347
L + GV + + +GV + +
Sbjct: 190 KDMLEETGVKFFL---NSELLEANE-EGV----------LTN--SGFIEG-----KVKIC 228
Query: 348 NLHHIGV----DIKKKSY------VVCNEKDQTSVGNIFAVG------GIVHG 384
IG+ D+ ++S ++ ++ +TS +++A+G GI+ G
Sbjct: 229 A---IGIVPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIAG 278
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 41.0 bits (97), Expect = 8e-04
Identities = 41/229 (17%), Positives = 74/229 (32%), Gaps = 49/229 (21%)
Query: 179 LKALGIDIV--RTAAAF-TNPHTIKLSNRSVTGFNFLL----AVERRCLPEPRNSA---- 227
ID++ A TI L + + + ++ + R + P +
Sbjct: 67 YGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRART-MALPGSQLPGVV 125
Query: 228 -LISADDLFRLGAW--PGKTL-VLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKH-FDQ 281
L + D+ L L ++GG L+ E+A T LG+ VT++ LL +
Sbjct: 126 TLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGR 185
Query: 282 EMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPF-ADVFKTVVNAMEK 340
+ L LT+ GV ++ + F G + F AD +
Sbjct: 186 RIGAWLRGLLTELGVQVEL---GTGVVGFSGEGQLEQVMASDGRSFVADS---ALIC--- 236
Query: 341 KFDFAALNLHHIGVD----------IKKKSYVVCNEKDQTSVGNIFAVG 379
+G + + V+ + T +FAVG
Sbjct: 237 -----------VGAEPADQLARQAGLACDRGVIVDHCGATLAKGVFAVG 274
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 38.3 bits (90), Expect = 0.004
Identities = 31/166 (18%), Positives = 49/166 (29%), Gaps = 33/166 (19%)
Query: 243 KTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQCCV 302
K V+ S MA+ A L G + E + L GV +
Sbjct: 143 KIGVIAASPMAIHHALMLPDWGETTFFT-------NGIVEPDADQHALLAARGVRV---- 191
Query: 303 IEKVISSFDGMKGVRGFHPESKEPFADVF---KTVVNAMEKKFDFAALNLHHIGVDI--- 356
I G V A +F K + D+ +G +
Sbjct: 192 ETTRIREIAGHADVV-LADGRSIALAGLFTQPKLRITV-----DWIE----KLGCAVEEG 241
Query: 357 KKKSYVVCNEKDQTSVGNIFAVGGIVHGKPN------NASMAAISA 396
S +V + QT+ IFA G + + + +MA +A
Sbjct: 242 PMGSTIVTDPMKQTTARGIFACGDVARPAGSVALAVGDGAMAGAAA 287
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 38.4 bits (90), Expect = 0.004
Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 36/181 (19%)
Query: 242 GKT-LVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRILLSSLTKAGVSIQC 300
GK +++GG A++ L VTLV+ + + + + + +
Sbjct: 163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG-HGKTAHEVERARANGTIDV-- 219
Query: 301 CVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAAL--------NLHHI 352
+E ++S + GV V + + + L NL +
Sbjct: 220 -YLETEVASIEESNGV----------LTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPL 268
Query: 353 ---GVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH--GKPN-------NASMAAISARLII 400
+++ + + VV + +TSV ++A G I + GK A+MA + I
Sbjct: 269 ARWDLELYENALVV-DSHMKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSYI 327
Query: 401 E 401
+
Sbjct: 328 K 328
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 38.7 bits (91), Expect = 0.004
Identities = 44/232 (18%), Positives = 76/232 (32%), Gaps = 49/232 (21%)
Query: 179 LKALGIDIV--RTAAAF-TNPHTIKLSNRSVTGFNFLL----AVERRCLPEPRNSALI-- 229
A I ++ A + + LS+ ++ L+ R LP +
Sbjct: 70 YAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRP-LPVASGAVGKAN 128
Query: 230 ------SADDLFRLGAW--PGKTL-VLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKH- 278
+ +D + L V+GG + +E+AAT + VTL+ + R+L+
Sbjct: 129 NFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV 188
Query: 279 FDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPF-ADVFKTVVNA 337
+ +AGV I+ + V E AD+ V+
Sbjct: 189 TAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADL---VIAG 245
Query: 338 MEKKFDFAALNLHHIGVD----------IKKKSYVVCNEKDQTSVGNIFAVG 379
IG+ ++ + +V NE QTS I AVG
Sbjct: 246 --------------IGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVG 283
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 37.2 bits (87), Expect = 0.010
Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 34/158 (21%)
Query: 236 RLGAWPGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKH-FDQEMVRILLSSLTK 293
L A +V+GG + +E AA L GV VTL+ R+L + + +
Sbjct: 147 ELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRA 206
Query: 294 AGVSIQCCVIEKVISSFDGMKG-VRGFHPESKEPF-ADVFKTVVNAMEKKFDFAALNLHH 351
GV ++ + +G V G + AD+ V+
Sbjct: 207 HGVDLRT---GAAMDCIEGDGTKVTGVRMQDGSVIPADI---VIVG-------------- 246
Query: 352 IGVD----------IKKKSYVVCNEKDQTSVGNIFAVG 379
IG+ + V +E +TS+ +++A+G
Sbjct: 247 IGIVPCVGALISAGASGGNGVDVDEFCRTSLTDVYAIG 284
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 36.8 bits (86), Expect = 0.014
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 232 DDL--FRLGAWPGKT-LVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLL-KHFDQEMVRI 286
+D FR A + L+LG L+ E A L+ G + +V +++ +
Sbjct: 133 EDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKA 192
Query: 287 LLSSLTKAGVSIQCCVIEKVISSFDGMKGVRG 318
+ + L GV V++S
Sbjct: 193 VQAGLEGLGVRFHL---GPVLASLKKAGEGLE 221
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 36.8 bits (86), Expect = 0.015
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 232 DDLFRLGAW---PGKTLVLGGSLMAVEIAATLNFLGVPVTLV-YSRRLL-KHFDQEMVRI 286
DD ++ GK ++GG ++ +E+A + G P ++ L + D++
Sbjct: 134 DDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLF 193
Query: 287 LLSSLTKAGVSIQC 300
L L + G+ I
Sbjct: 194 LKDKLDRLGIKIYT 207
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold,
thiol-disulfide oxidoreductase, glutaredox
oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana}
PDB: 3rhc_A* 3fz9_A* 3fza_A*
Length = 113
Score = 34.5 bits (80), Expect = 0.018
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 42 PSFETPPAYISRLSYENRILIFT-------HAVLREENARAERYLNARGDRFAVLYLDRI 94
I + EN ++I++ + G + V+ LD++
Sbjct: 3 SFGSRMEESIRKTVTENTVVIYSKTWCSYCT--------EVKTLFKRLGVQPLVVELDQL 54
Query: 95 GDEGILLEEELKRQTNQR 112
G +G L++ L+R T Q
Sbjct: 55 GPQGPQLQKVLERLTGQH 72
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 35.6 bits (83), Expect = 0.028
Identities = 36/178 (20%), Positives = 71/178 (39%), Gaps = 30/178 (16%)
Query: 242 GKT-LVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHF--DQEMVRILLSSLTKAGVSI 298
GK L++GG AV+ A L +TL++ RR F + V+ L+ + + + +
Sbjct: 152 GKRVLIVGGGDSAVDWALNLLDTARRITLIH-RR--PQFRAHEASVKELMKAHEEGRLEV 208
Query: 299 QC-CVIEKVISSFDGMKGVRGFHPESKEPF---ADVFKTVVNAMEKKFDFAALN--LHHI 352
+ +V + ++ FH +++E D ++ + L +
Sbjct: 209 LTPYELRRVEGD-ERVRWAVVFHNQTQEELALEVDAV--LIL-----AGYITKLGPLANW 260
Query: 353 GVDIKKKSYVVCNEKDQTSVGNIFAVGGIVH--GKPN-------NASMAAISARLIIE 401
G+ ++K + + TS+ ++A G IV GK A++AA A
Sbjct: 261 GLALEKN-KIKVDTTMATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAAYAN 317
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 35.2 bits (82), Expect = 0.045
Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 32/177 (18%)
Query: 242 GKT-LVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHF--DQEMVRILLSSLTKAGVSI 298
G+ +LGG AV+ A L + V++++ RR F + V L +S K V
Sbjct: 154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIH-RR--DKFRAHEHSVENLHAS--KVNVLT 208
Query: 299 QCCVIEKVISSFDGMKGVRGFHPESKEPF---ADVFKTVVNAMEKKFDFAALN--LHHIG 353
E + D ++ + + D +VN + F + + + G
Sbjct: 209 PFVPAE--LIGEDKIEQLVLEEVKGDRKEILEIDDL--IVN-----YGFVSSLGPIKNWG 259
Query: 354 VDIKKKSYVVCNEKDQTSVGNIFAVGGIVH--GKPN-------NASMAAISARLIIE 401
+DI+K S VV +T++ FA G I GK N A A +A+ ++
Sbjct: 260 LDIEKNSIVV-KSTMETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYMD 315
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 35.2 bits (82), Expect = 0.053
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 181 ALGIDIV--RTAAAF-TNPHTIKLSNRSVTGFNFLL----AVERRCLPEPRNSA-----L 228
A ++ + TA +F HT+ LS+ + L+ A R LP + + L
Sbjct: 71 APEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA-LPTLQGATMPVHTL 129
Query: 229 ISADDLFRLGAW--PGKTL-VLGGSLMAVEIAATLNFLGVPVTLV-YSRRLLKH-FDQEM 283
+ +D R+ A P L ++GG ++ +E+AAT GV V+LV RL+ +
Sbjct: 130 RTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATL 189
Query: 284 VRILLSSLTKAGVSIQC 300
+ GV ++
Sbjct: 190 ADFVARYHAAQGVDLRF 206
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 34.3 bits (79), Expect = 0.098
Identities = 22/173 (12%), Positives = 53/173 (30%), Gaps = 29/173 (16%)
Query: 171 AKNDSMRELKALGIDIV--RTAAAF-TNPHTIKLSNRSVTGFNFLL----AVERRCLPEP 223
+ ++ G+ ++ + + +KL++ S + L R L
Sbjct: 92 VSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRS-LSAI 150
Query: 224 RNSA---------LISADDLFRLGAW--PGKTL-VLGGSLMAVEIAATLNF----LGVPV 267
+ D L K++ ++GG + E+A L LG V
Sbjct: 151 DRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEV 210
Query: 268 TLVYS-RRLLKH-FDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRG 318
++ + + + + + + + GV + ++ S G
Sbjct: 211 IQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMP---NAIVQSVGVSSGKLL 260
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.30A {Homo sapiens} SCOP:
d.370.1.1 PDB: 2d5r_B
Length = 130
Score = 32.2 bits (73), Expect = 0.12
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 248 GGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRIL 287
G S M +EI LNF+ + RR + F +E+ R+L
Sbjct: 4 GSSGMQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLL 43
>3jpz_A Lombricine kinase; mixed alpha / beta, transferase; 1.95A {Urechis
caupo} PDB: 3jq3_A*
Length = 366
Score = 32.9 bits (74), Expect = 0.24
Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 4/129 (3%)
Query: 275 LLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTV 334
+ +H + EM + L T GV++ I+ + +F G+ ES E F ++F V
Sbjct: 21 VGRHLNFEMYQRLFGKKTAHGVTVDKV-IQPSVDNFGNCIGLIAGDEESYEVFKELFDAV 79
Query: 335 VNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAI 394
+N K F N D+ V ++ G + G S
Sbjct: 80 INEKHKGFG---PNDSQPAPDLDASKLVGGQFDEKYVKSCRIRTGRGIRGLCYPPSCTRG 136
Query: 395 SARLIIERL 403
R + +
Sbjct: 137 ERREVERVI 145
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 30.7 bits (70), Expect = 0.41
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 16/69 (23%)
Query: 51 ISRLSYENRILIFT-------HAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEE 103
L+ +++F+ + R ++ L G + V+ LD + D G L+
Sbjct: 13 AKELASSAPVVVFSKTYCGYCN--------RVKQLLTQVGASYKVVELDELSD-GSQLQS 63
Query: 104 ELKRQTNQR 112
L T +
Sbjct: 64 ALAHWTGRG 72
>1qh4_A Creatine kinase; cancer, cellular energy metabolism, guanidino
kinase, neurodegenerative disorders, transferase; 1.41A
{Gallus gallus} SCOP: a.83.1.1 d.128.1.2 PDB: 3b6r_A*
3drb_A* 3dre_A 1g0w_A 1i0e_A 1u6r_A* 1vrp_A* 2crk_A
Length = 380
Score = 31.8 bits (71), Expect = 0.51
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 274 RLLKHFDQEMVRILLSSLTKAGVSIQCCV---IEKVISSFDGMKGVRGFHPESKEPFADV 330
+ K ++ + L T +G ++ + ++ F G ES E F ++
Sbjct: 28 HMAKVLTLDLYKKLRDRQTSSGFTLDDVIQTGVDNPGHPFIMTVGCVAGDEESYEVFKEL 87
Query: 331 FKTVVNAMEKKFD 343
F V+ +
Sbjct: 88 FDPVIEDRHGGYK 100
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.52
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 15/45 (33%)
Query: 357 KKKSYVVCNEKDQTSVGNIFAVGGIVHGKPNNASMAAISARLIIE 401
+K++ +K Q S+ ++A ++A AI A +E
Sbjct: 18 EKQAL----KKLQASL-KLYA--------DDSAPALAIKAT--ME 47
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 31.7 bits (73), Expect = 0.59
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 19/83 (22%)
Query: 349 LHHIGVDIKKKSYVVCNEKD-QTSVGNIFAVGGIVHGKPNNASMA--AIS-----ARLII 400
+ + + ++ + + T++ +FA G IV G AS+ AI A
Sbjct: 385 FDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRG----ASLVVWAIRDGRDAAE--- 437
Query: 401 ERLYGMQDQLMDYSFLPVVVRGD 423
G+ + PV V +
Sbjct: 438 ----GIHAYAKAKAEAPVAVAAE 456
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics,
structural genomics CON SGC, developmental protein,
differentiation; 2.21A {Homo sapiens}
Length = 114
Score = 29.9 bits (68), Expect = 0.60
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 74 RAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQR 112
R + ++ G VL LD++ D+G ++E L TNQ+
Sbjct: 32 RVKELFSSLGVECNVLELDQV-DDGARVQEVLSEITNQK 69
>1m15_A Arginine kinase, AK; creatine kinase, phosphagen kinase, transition
state analog, adenosine triphosphate, transferas; HET:
ARG ADP; 1.20A {Limulus polyphemus} SCOP: a.83.1.1
d.128.1.2 PDB: 1m80_A 3m10_A 1bg0_A* 1p50_A* 1sd0_A*
1p52_A* 1rl9_A* 2j1q_A
Length = 357
Score = 31.4 bits (70), Expect = 0.64
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
Query: 274 RLLKHFDQEMVRILLSSLTKAGVSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKT 333
L KH +++ + + T G ++ I+ + + D G+ ES F +F
Sbjct: 26 LLKKHLTKDVFDSIKNKKTGMGATLLDV-IQSGVENLDSGVGIYAPDAESYRTFGPLFDP 84
Query: 334 VVNAMEKKFDFAALNLHHIGVDIKKKSYVVCNEK 367
+++ F + DI + +
Sbjct: 85 IIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQ 118
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1,
structural genomics, limited proteolysis,
phosphoprotein, protein biosynthesis; 1.85A {Homo
sapiens}
Length = 80
Score = 28.7 bits (64), Expect = 0.92
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 14/70 (20%)
Query: 312 GMKGVRGFHPESKEPF---ADVFKTVVNAMEKKFDFAALNLHHI--------GVDIKKKS 360
+ G+ +P S++ F + K + EK +A+ + D+KK +
Sbjct: 1 AVYGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLEIDDLKKIT 60
Query: 361 Y---VVCNEK 367
V+C+EK
Sbjct: 61 NSLTVLCSEK 70
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis;
1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A*
1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A*
1mej_B 1men_A*
Length = 209
Score = 30.5 bits (70), Expect = 0.94
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 437 AKVYGADGLVIYKSSYPT---FDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKL 493
A+ G VI Y FD+ +D +L E + +VCL G R+L FV+
Sbjct: 46 AERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILS------GPFVQ- 98
Query: 494 VCLKGGERVLGIH 506
K ++L IH
Sbjct: 99 ---KWNGKMLNIH 108
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 30.8 bits (70), Expect = 1.4
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 229 ISADDLFRLGAWPGKTLVL---GGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVR 285
++ + + GK +V+ MA +A L G VT+V L + +
Sbjct: 515 LTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEY 574
Query: 286 I-LLSSLTKAGVSI 298
++ L + V
Sbjct: 575 PNMMRRLHELHVEE 588
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading
bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Length = 197
Score = 29.9 bits (67), Expect = 1.4
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 433 EEAAAKVYGADGLVI----YKSSYP-TFDNLLDPLLPENF----VKLVCLKGGERVLGIH 483
+EA ADGL++ YK+SY LD L + G H
Sbjct: 61 KEAVDATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLATGGSPA----H 116
Query: 484 VIGQNNFVKLVCLKGGERVLGIHVIGQNVA 513
V+ + ++ V +G+ + Q+
Sbjct: 117 VLALDYGLRPVL-----HSMGVRHVVQSFF 141
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB:
3k20_A
Length = 191
Score = 29.5 bits (66), Expect = 1.8
Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 19/132 (14%)
Query: 392 AAISARLIIERLYGMQDQLMDYSFLPV-VVRGDVEFGTVGMSEEAAAKVYGADGLVI--- 447
+ + R + ++ S L ++ EE + + +DGLV+
Sbjct: 35 SEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVVATP 94
Query: 448 -YKSSYP-TFDNLLDPLLPENF----VKLVCLKGGERVLGIHVIGQNNFVKLVCLKGGER 501
+K+SY F D L + + G R H + + ++ +
Sbjct: 95 VFKASYTGLFKMFFDILDTDALTGMPTIIAATAGSAR----HSLVLDYALRPLL-----S 145
Query: 502 VLGIHVIGQNVA 513
+ V+ V
Sbjct: 146 YMRAVVVPTGVF 157
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 30.3 bits (69), Expect = 1.9
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 229 ISADDLFRLGAWPGKTLVL---GGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVR 285
+ DDLF GK +V+ + +A L G V++V + +
Sbjct: 510 LGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFE 569
Query: 286 I--LLSSLTKAGVSI 298
+ + L + GV+
Sbjct: 570 VNRIQRRLIENGVAR 584
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 29.8 bits (67), Expect = 2.6
Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 28/181 (15%)
Query: 242 GKTLVLGGSLMAVEIAATLNFLGVPVTLVYSRRLLKHFDQEMVRIL-------LSSLTKA 294
G+ +V+GG+ + A L G + L S L D + L L ++ K
Sbjct: 167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQ 226
Query: 295 G--VSIQCCVIEKVISSFDGMKGVRGFHPESKEPFADVFKTVVNAMEKKFDFAALNLHHI 352
G + + K I +G + +S + + A + + +
Sbjct: 227 GARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHE----PILATGFDATKNPI-VQQL 281
Query: 353 GVDIKKKSYVVCNEKDQ-TSVGNIFAVGGIVHGKPNNASM---------AAISARLIIER 402
V + + D+ T NIF +G V +NA + A+ A L+ +R
Sbjct: 282 FVTTNQ--DIKLTTHDESTRYPNIFMIGATVEN--DNAKLCYIYKFRARFAVLAHLLTQR 337
Query: 403 L 403
Sbjct: 338 E 338
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.85A {Brucella melitensis BV}
Length = 209
Score = 29.0 bits (66), Expect = 2.8
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Query: 437 AKVYGADGLVIYKSSYPT---FDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKL 493
A+ G V + + + ++ + L ++CL G R+L F+
Sbjct: 53 AEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYMRLLS------GRFIA- 105
Query: 494 VCLKGGERVLGIH 506
R+L IH
Sbjct: 106 ---PYEGRILNIH 115
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein
structure initiative, midwest center for structural
genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus
pneumoniae} SCOP: d.356.1.1
Length = 183
Score = 28.8 bits (64), Expect = 2.8
Identities = 13/113 (11%), Positives = 29/113 (25%), Gaps = 3/113 (2%)
Query: 53 RLSYENRILIFTHAVLREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQR 112
+ + + E + + R L+ D ++ +
Sbjct: 70 HYPFIQSFSLLSLEDFEAELENLPAWWSRDLARKDFLFYTEGLDVDQVIATVESLELKDE 129
Query: 113 RDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAATKLIK 165
+ G + Y A L+ ++TIRN K+ +
Sbjct: 130 VLYFGKLGIFWG-KFSEESYSKTAYHKYLLKV--PFYRHITIRNAKTFDKIGQ 179
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 29.5 bits (67), Expect = 3.6
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 76 ERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQ 111
+ Y ++ A+++ D G+E I ++LK +++
Sbjct: 63 DVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDK 98
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold,
structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Length = 216
Score = 28.6 bits (65), Expect = 4.7
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 437 AKVYGADGLVIYKSSYPT---FDNLLDPLLPENFVKLVCLKGGERVLGIHVIGQNNFVKL 493
K + + VI + +P+ F+ + L + V+LV L G R+L +NF+K
Sbjct: 47 CKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFMRILS------HNFLK- 99
Query: 494 VCLKGGERVLGIH 506
+V+ IH
Sbjct: 100 ---YFPNKVINIH 109
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 28.6 bits (65), Expect = 5.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 349 LHHIGVDIKKKSYVVCNEKDQTSVGNIFAVG 379
L GV + ++ Y+V + + +TSV ++A G
Sbjct: 257 LKDSGVKLDERGYIVVDSRQRTSVPGVYAAG 287
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 27.3 bits (60), Expect = 5.5
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 102 EEELKRQTNQRRDELQERGSHLSFRKKRRLYYPVAMSDLELEQDSTSALNVTIRNWNAAT 161
+EE+ + +RR L+ RG S R KR +LE ++ + + NA+
Sbjct: 30 KEEIIQLKQRRR-TLKNRGYAASCRVKRVTQ----KEELEKQKAELQQEVEKLASENASM 84
Query: 162 KLIKRFCIRAKNDSMREL 179
K ++ +R+K ++++
Sbjct: 85 K-LELDALRSKYEALQNF 101
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 28.6 bits (64), Expect = 6.1
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 353 GVDIKKKSYVVCNEKD-QTSVGNIFAVGGIVHG 384
+ + + + QTS +FA G IV
Sbjct: 453 PIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGM 485
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 28.4 bits (64), Expect = 7.0
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 68 LREENARAERYLNARGDRFAVLYLDRIGDEGILLEEELKRQTNQRRDELQER 119
L A R L+ R L I I +EL RQ ++ L+E
Sbjct: 46 LCAYPEDAARALDLRKGELRSKDLPGI----ISTWQEL-RQLREQIRSLEEE 92
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 28.4 bits (64), Expect = 7.6
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 176 MRELKALGIDIVR----TAAAFTNPHTIKLSNRSVTGFNFLLAVERRCLPEP--RNSALI 229
R ++ G+ + TA L+ +G + R P + ++
Sbjct: 432 RRMIEVTGVTLKLNHTVTADQLQAFDETILA----SG------IVPRTPPIDGIDHPKVL 481
Query: 230 SADDLFRLGAWPGKT-LVLGGSLMAVEIAATLNFLGVPVTLV 270
S D+ R A G ++G + + A L+ G +
Sbjct: 482 SYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQN 523
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 27.8 bits (62), Expect = 9.7
Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 15/82 (18%)
Query: 339 EKKFDFAALNLHHIGVDIKKKS-------YVVCNEKDQTSVG--NIFAVGGIVHGKPNN- 388
E K D L I + + + + K S I +G P
Sbjct: 244 EFKADVINLIPPQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPK 303
Query: 389 -----ASMAAISARLIIERLYG 405
S ++A ++ L G
Sbjct: 304 SGYSANSQGKVAAAAVVVLLKG 325
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.398
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,375,687
Number of extensions: 535362
Number of successful extensions: 1566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1389
Number of HSP's successfully gapped: 143
Length of query: 535
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 437
Effective length of database: 3,965,535
Effective search space: 1732938795
Effective search space used: 1732938795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)