BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14464
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 265 bits (676), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 121/166 (72%), Positives = 141/166 (84%)
Query: 10 SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 69
++ +QGVDILKRLY SKN+ IRVRALVGLCKLGS GG DA+IRPF DG+ KLAEACRRF
Sbjct: 326 ALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRF 385
Query: 70 LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTL 129
L+ P +D DIRRWAA+GLAYLTLDAE KE LIEDK ++ AL+D+A G +C YGVVTT
Sbjct: 386 LIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTF 445
Query: 130 VNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRLLVL 175
VNLCNAY+KQE++PEMIELAKFAK HIPE+HELDD DF+ KR+ VL
Sbjct: 446 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL 491
>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2
Protein From Bacteroides Thetaiotaomicron
Length = 1000
Score = 32.7 bits (73), Expect = 0.11, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 42 GSMGGSDASIRPFADGSTRKLAEACRRF---------LVNPARDPDIRRWAAEGLAYLTL 92
G+ G+ + D S + + E R+ + + R PD+RRW AE TL
Sbjct: 251 GTASGTSSIAYTLKDASDKTVLEGSRKLESHGSGNLIVFDEQRLPDVRRWNAEHPELYTL 310
Query: 93 DAEVKEA 99
E+K+A
Sbjct: 311 LLELKDA 317
>pdb|4FDI|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDI|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDJ|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
pdb|4FDJ|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
Length = 502
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 19/106 (17%)
Query: 73 PARD-PDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVN 131
P+R+ P++ R AAEGL + A P+ AAL+ +G+ G TT +
Sbjct: 26 PSRETPNLDRMAAEGLLF----PNFYSANPLXSPSRAALL----TGRLPIRNGFYTTNAH 77
Query: 132 LCNAYDKQEII----------PEMIELAKFAKHHIPEDHELDDPDF 167
NAY QEI+ PE+++ A + + + H P F
Sbjct: 78 ARNAYTPQEIVGGIPDSEQLLPELLKKAGYVSKIVGKWHLGHRPQF 123
>pdb|1IQZ|A Chain A, Oxidized [4fe-4s] Ferredoxin From Bacillus
Thermoproteolyticus (Form I)
pdb|1IR0|A Chain A, Oxidized [4fe-4s] Ferredoxin From Bacillus
Thermoproteolyticus (Form Ii)
pdb|1WTF|A Chain A, Crystal Structure Of Bacillus Thermoproteolyticus
Ferredoxin Variants Containing Unexpected [3fe-4s]
Cluster That Is Linked To Coenzyme A At 1.6 A Resolution
pdb|1WTF|B Chain B, Crystal Structure Of Bacillus Thermoproteolyticus
Ferredoxin Variants Containing Unexpected [3fe-4s]
Cluster That Is Linked To Coenzyme A At 1.6 A Resolution
pdb|1WTF|C Chain C, Crystal Structure Of Bacillus Thermoproteolyticus
Ferredoxin Variants Containing Unexpected [3fe-4s]
Cluster That Is Linked To Coenzyme A At 1.6 A Resolution
pdb|1WTF|D Chain D, Crystal Structure Of Bacillus Thermoproteolyticus
Ferredoxin Variants Containing Unexpected [3fe-4s]
Cluster That Is Linked To Coenzyme A At 1.6 A Resolution
Length = 81
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 64 EACRRFLVNPARDPDIRRWAAEGLAYLTLD-----AEVKEALIED 103
E C A PDI + +G+AY+TLD EV + LI+D
Sbjct: 9 ETCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDD 53
>pdb|1RH7|A Chain A, Crystal Structure Of Resistin-Like Beta
pdb|1RH7|B Chain B, Crystal Structure Of Resistin-Like Beta
pdb|1RH7|C Chain C, Crystal Structure Of Resistin-Like Beta
pdb|1RH7|D Chain D, Crystal Structure Of Resistin-Like Beta
pdb|1RH7|E Chain E, Crystal Structure Of Resistin-Like Beta
pdb|1RH7|F Chain F, Crystal Structure Of Resistin-Like Beta
Length = 81
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 92 LDAEVKEALIEDKPALAALVDVASSGKPA-CTYGVVTTLVNL---CNAYD 137
+D +KEAL +P + V SSG+ A C G+V T C ++D
Sbjct: 7 VDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWD 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,239,245
Number of Sequences: 62578
Number of extensions: 202562
Number of successful extensions: 609
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 8
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)