BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14464
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|D7REX8|UN45B_XENTR Protein unc-45 homolog B OS=Xenopus tropicalis GN=unc45b PE=1 SV=1
Length = 927
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 89/163 (54%), Positives = 121/163 (74%), Gaps = 1/163 (0%)
Query: 11 IIKQGVDILKRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 69
II GV +LK +Y +KNE I++RALVGLCKLGS GG+D ++R FA+GST KLA+ CR++
Sbjct: 455 IITNGVSLLKDIYKKTKNEKIKIRALVGLCKLGSAGGTDYALRQFAEGSTDKLAKQCRKW 514
Query: 70 LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTL 129
L NP+ D R+WA EGLAYLTLDA+VK+ +ED+ +L A+ +++ + Y V TTL
Sbjct: 515 LCNPSLDIQTRKWAVEGLAYLTLDADVKDEFVEDEQSLKAMFELSKTSDKTILYSVATTL 574
Query: 130 VNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRL 172
VN N+YD +E+IPEM++LAKF+K H+PE H D DFV KR+
Sbjct: 575 VNCTNSYDVKEVIPEMVQLAKFSKQHVPEQHPKDKKDFVEKRV 617
>sp|Q6DGE9|UN45B_DANRE Protein unc-45 homolog B OS=Danio rerio GN=unc45b PE=1 SV=2
Length = 934
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/163 (54%), Positives = 116/163 (71%), Gaps = 1/163 (0%)
Query: 11 IIKQGVDILKRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 69
I GV +LK +Y +KNE I++RALVGLCKLGS GG D S+R FA+GST KLA+ CR++
Sbjct: 462 FISNGVSLLKEMYKKTKNEKIKIRALVGLCKLGSAGGDDYSMRQFAEGSTEKLAKQCRKW 521
Query: 70 LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTL 129
L NP D R+WA EGLAYLT DA+VK+ ED+PA+ A+ ++ S Y V TL
Sbjct: 522 LCNPTLDVRTRKWAIEGLAYLTNDADVKDDFAEDEPAMRAMFELTKSNDKTILYAVACTL 581
Query: 130 VNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRL 172
VN N+YDK+EIIPEM++LAKF+K H+PE H D DF+ +R+
Sbjct: 582 VNCTNSYDKKEIIPEMVQLAKFSKQHVPEQHPKDKKDFIVRRV 624
>sp|Q68F64|UN45B_XENLA Protein unc-45 homolog B OS=Xenopus laevis GN=unc45b PE=2 SV=1
Length = 927
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/163 (53%), Positives = 119/163 (73%), Gaps = 1/163 (0%)
Query: 11 IIKQGVDILKRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 69
II GV +LK +Y +KNE I++RALVGLCKLGS GG+D ++R FA+GST KLA+ CR++
Sbjct: 455 IITNGVSLLKDIYKKTKNEKIKIRALVGLCKLGSAGGTDYALRQFAEGSTDKLAKQCRKW 514
Query: 70 LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTL 129
L N + D R+WA EGLAYLTLDA+VK+ +ED+ +L A+ ++ + Y V TTL
Sbjct: 515 LCNTSLDIQTRKWAVEGLAYLTLDADVKDEFVEDEQSLKAMFELCKTSDKTILYSVATTL 574
Query: 130 VNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRL 172
VN N+YD +E+IPEM++LAKF+K H+PE H D DFV KR+
Sbjct: 575 VNCTNSYDVKEVIPEMVQLAKFSKQHVPEQHPKDKKDFVLKRV 617
>sp|Q8IWX7|UN45B_HUMAN Protein unc-45 homolog B OS=Homo sapiens GN=UNC45B PE=2 SV=1
Length = 931
Score = 190 bits (483), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 124/171 (72%), Gaps = 6/171 (3%)
Query: 9 TSIIKQGVDILKRLY-MSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACR 67
T II GV +LK++Y +KNE I++R LVGLCKLGS GG+D +R FA+GST KLA+ CR
Sbjct: 456 TFIITNGVSLLKQIYKTTKNEKIKIRTLVGLCKLGSAGGTDYGLRQFAEGSTEKLAKQCR 515
Query: 68 RFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACT--YGV 125
++L N + D RRWA EGLAYLTLDA+VK+ ++D PAL A+ ++A +G T Y V
Sbjct: 516 KWLCNMSIDTRTRRWAVEGLAYLTLDADVKDDFVQDVPALQAMFELAKAGTSDKTILYSV 575
Query: 126 VTTLVNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFV---TKRLL 173
TTLVN N+YD +E+IPE+++LAKF+K H+PE+H D DF+ KRLL
Sbjct: 576 ATTLVNCTNSYDVKEVIPELVQLAKFSKQHVPEEHPKDKKDFIDMRVKRLL 626
>sp|Q8CGY6|UN45B_MOUSE Protein unc-45 homolog B OS=Mus musculus GN=Unc45b PE=1 SV=1
Length = 931
Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 122/171 (71%), Gaps = 6/171 (3%)
Query: 9 TSIIKQGVDILKRLY-MSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACR 67
T II GV +LK++Y +KNE I++R LVGLCKLGS GGSD +R FA+GST KLA+ CR
Sbjct: 456 TFIITNGVTLLKQIYKTTKNEKIKIRTLVGLCKLGSAGGSDYGLRQFAEGSTEKLAKQCR 515
Query: 68 RFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACT--YGV 125
++L N A D RRWA EGLAYLTLDA+VK+ ++D PAL A+ ++A + T Y V
Sbjct: 516 KWLCNTAIDTRTRRWAVEGLAYLTLDADVKDDFVQDIPALQAMFELAKARTSDKTILYSV 575
Query: 126 VTTLVNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFV---TKRLL 173
TLVN N+YD +E++PE+++LAKF+K H+PE+H D DFV KRLL
Sbjct: 576 ANTLVNCTNSYDVKEVVPELVQLAKFSKQHVPEEHPKDKKDFVDLRVKRLL 626
>sp|Q5RAP0|UN45A_PONAB Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1
Length = 929
Score = 176 bits (447), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 113/163 (69%), Gaps = 1/163 (0%)
Query: 11 IIKQGVDILKRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 69
I GV +LK LY S+ ++IR+RALVGLCKLGS GG+D S++ FA+GST KLA+ CR++
Sbjct: 459 ITANGVSLLKDLYKRSEKDSIRIRALVGLCKLGSAGGTDFSMKQFAEGSTLKLAKQCRKW 518
Query: 70 LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTL 129
L N D RRWA EGLAYLT DA+VKE +ED AL AL ++ S + + + V + L
Sbjct: 519 LCNDQIDAGTRRWAVEGLAYLTFDADVKEEFVEDAAALKALFQLSRSEERSVLFAVASAL 578
Query: 130 VNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRL 172
VN N+YD +E P+M+ELAK+AK H+PE H D P FV R+
Sbjct: 579 VNCTNSYDYEEPDPKMVELAKYAKQHVPEQHPKDKPSFVRARV 621
>sp|Q99KD5|UN45A_MOUSE Protein unc-45 homolog A OS=Mus musculus GN=Unc45a PE=1 SV=2
Length = 944
Score = 176 bits (446), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 114/163 (69%), Gaps = 1/163 (0%)
Query: 11 IIKQGVDILKRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 69
I GV +LK LY S+ ++IR+RALVGLCKLGS GG+D S++ FA+GST KLA+ CR++
Sbjct: 474 ITANGVSLLKDLYKGSERDSIRIRALVGLCKLGSAGGTDFSMKQFAEGSTLKLAKQCRKW 533
Query: 70 LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTL 129
L N D RRWA EGLAYLT DA+VKE +ED+ AL AL ++ S + + + V + L
Sbjct: 534 LCNDQIDAGTRRWAVEGLAYLTFDADVKEEFVEDEAALKALFQLSRSEERSVLFAVGSAL 593
Query: 130 VNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRL 172
VN N+YD +E P+M+ELAK+AK H+PE H D P FV R+
Sbjct: 594 VNCTNSYDYEEPDPKMVELAKYAKQHVPEQHPKDKPSFVRARV 636
>sp|Q32PZ3|UN45A_RAT Protein unc-45 homolog A OS=Rattus norvegicus GN=Unc45a PE=2 SV=1
Length = 944
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 114/163 (69%), Gaps = 1/163 (0%)
Query: 11 IIKQGVDILKRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 69
I GV +LK LY S+ ++IR+RALVGLCKLGS GG+D S++ FA+GST KLA+ CR++
Sbjct: 474 ITANGVALLKDLYKGSERDSIRIRALVGLCKLGSAGGTDFSMKQFAEGSTLKLAKQCRKW 533
Query: 70 LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTL 129
L N D RRWA EGLAYLT DA+VKE +ED+ AL AL ++ S + + + V + L
Sbjct: 534 LCNDQIDAGTRRWAVEGLAYLTFDADVKEEFVEDEAALKALFQLSRSEERSVLFAVGSAL 593
Query: 130 VNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRL 172
VN N+YD +E P+M+ELAK+AK H+PE H D P FV R+
Sbjct: 594 VNCTNSYDYEEPDPKMVELAKYAKQHVPEQHPKDKPSFVRARV 636
>sp|Q9H3U1|UN45A_HUMAN Protein unc-45 homolog A OS=Homo sapiens GN=UNC45A PE=1 SV=1
Length = 944
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 112/163 (68%), Gaps = 1/163 (0%)
Query: 11 IIKQGVDILKRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRF 69
I GV +LK LY S+ ++IR+RALVGLCKLGS GG+D S++ FA+GST KLA+ CR++
Sbjct: 474 ITANGVSLLKDLYKCSEKDSIRIRALVGLCKLGSAGGTDFSMKQFAEGSTLKLAKQCRKW 533
Query: 70 LVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTL 129
L N D RRWA EGLAYLT DA+VKE +ED AL AL ++ + + + V + L
Sbjct: 534 LCNDQIDAGTRRWAVEGLAYLTFDADVKEEFVEDAAALKALFQLSRLEERSVLFAVASAL 593
Query: 130 VNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRL 172
VN N+YD +E P+M+ELAK+AK H+PE H D P FV R+
Sbjct: 594 VNCTNSYDYEEPDPKMVELAKYAKQHVPEQHPKDKPSFVRARV 636
>sp|Q6C5Y8|VAC8_YARLI Vacuolar protein 8 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=VAC8 PE=3 SV=1
Length = 573
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 74 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAA-LVDVASSGKPACTYGVVTTLVNL 132
+RDPD++ ++ L+ + +D ++ L +P L L+ + SG P L NL
Sbjct: 242 SRDPDVQYYSTTALSNIAVDESNRKKLSSSEPRLVEHLIKLMDSGSPRVQCQAALALRNL 301
Query: 133 CNAYDKQ-EII-----PEMIELAKFAKHHIP 157
+ D Q EI+ P + L F H P
Sbjct: 302 ASDSDYQLEIVKANGLPHLFNL--FQSTHTP 330
>sp|Q2GHC3|GPDA_EHRCR Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Ehrlichia
chaffeensis (strain Arkansas) GN=gpsA PE=3 SV=1
Length = 326
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 5 SHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSM 44
+++I ++I +G++ +K LY +KN+NI + L+G LG +
Sbjct: 208 NNAIATVITKGMEEIKTLYAAKNQNINLSTLIGPSCLGDL 247
>sp|C4L3Y8|PPK_EXISA Polyphosphate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 /
AT1b) GN=ppk PE=3 SV=1
Length = 721
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 23/92 (25%)
Query: 68 RFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIE---DKPALAALVDVASSGKPACTYG 124
RF+V A+DP++ LA +K+ L D P + AL D A SGK
Sbjct: 357 RFIVQAAKDPNV-------LA-------IKQTLYRVSGDSPIIKALTDAAESGKQ----- 397
Query: 125 VVTTLVNLCNAYDKQEIIPEMIELAKFAKHHI 156
VT LV L +D+++ I +L K H I
Sbjct: 398 -VTVLVELKARFDEEKNIQWAKQLEKAGAHVI 428
>sp|Q77PU6|U90_HHV6Z Protein U90 OS=Human herpesvirus 6B (strain Z29) GN=U90 PE=4 SV=1
Length = 1078
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 126 VTTLVNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPD 166
V +LVNLC+ + +I EMI H P + E D+ D
Sbjct: 645 VESLVNLCDGFHDNPLISEMITFGYETDHSAPYESESDNND 685
>sp|Q3YRF6|GPDA_EHRCJ Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Ehrlichia canis
(strain Jake) GN=gpsA PE=3 SV=1
Length = 324
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 5 SHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSM 44
++++ S+I +G++ +K LY +KNE I + L+G LG +
Sbjct: 206 NNAVASVIAKGMEEIKTLYTAKNETINLSTLIGPSCLGDL 245
>sp|Q9M224|ADLO2_ARATH Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1
Length = 928
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 26/133 (19%)
Query: 3 IISHSITSI-------------IKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDA 49
IISH++ I + QG +L L S E+++ RA GL + +A
Sbjct: 356 IISHTLLRIAESSNSQGLNDFWLNQGATLLLSLMQSAQEDVQERAATGLATFIVVDDENA 415
Query: 50 SI---RPFA---DGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIED 103
SI R A DG R L E + + ++ AA+ +A L+++A+V +A+ E+
Sbjct: 416 SIDCGRAEAVMRDGGIRLLLELAKSW------REGLQSEAAKAIANLSVNAKVAKAVAEE 469
Query: 104 KPALAALVDVASS 116
++ L D+A S
Sbjct: 470 -GGISVLADLAKS 481
>sp|O65726|ERG12_BRANA Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1
Length = 518
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 10/128 (7%)
Query: 48 DASIRPFADGS---------TRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKE 98
IR F DG T E RF N R R A L + L+
Sbjct: 117 STGIRLFKDGKETVACFPVDTNFPYEPSGRFFHN-GRFVQRLRQKASSLPNVRLEEGTVR 175
Query: 99 ALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQEIIPEMIELAKFAKHHIPE 158
+LIE+K + + SSG+ ++ +T + + C++ ++ + E+ + +I
Sbjct: 176 SLIEEKGVVKGVTYKNSSGEETTSFAPLTVVCDGCHSNLRRSLNDNNAEVTAYEIGYISR 235
Query: 159 DHELDDPD 166
+ L+ PD
Sbjct: 236 NCRLEQPD 243
>sp|B5RUN4|RRF2M_DEBHA Ribosome-releasing factor 2, mitochondrial OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=MEF2 PE=3 SV=1
Length = 860
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 48 DASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAE-------VKEAL 100
++SI P G TR L +C + L+ DP ++ E L + L +KE L
Sbjct: 501 NSSIEPLTAGDTRHL-NSCIQILLR--EDPSLKVSVDEDLGQIILSGMGELHLEIIKERL 557
Query: 101 IEDKPALAALVDVASS-----GKPACTYGVVTTLVNLC 133
+ D A A L DVA S GKP +T N C
Sbjct: 558 VTDMKANARLRDVAVSYKETLGKPNYKSVTQSTGDNGC 595
>sp|Q93FR9|GPDA_EHRRU Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Ehrlichia
ruminantium GN=gpsA PE=3 SV=1
Length = 327
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 28/40 (70%)
Query: 5 SHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSM 44
++++ ++I +G++ +K LY++KN +I + L+G LG +
Sbjct: 208 NNAVATVITKGMNEIKTLYIAKNHSIDLHTLIGPSCLGDL 247
>sp|Q5FG15|GPDA_EHRRG Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Ehrlichia
ruminantium (strain Gardel) GN=gpsA PE=3 SV=1
Length = 327
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 28/40 (70%)
Query: 5 SHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSM 44
++++ ++I +G++ +K LY++KN +I + L+G LG +
Sbjct: 208 NNAVATVITKGMNEIKTLYIAKNHSIDLHTLIGPSCLGDL 247
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 96 VKEALIEDKPALAALVDVASSGKPACTYGVVTTL-------VNLCNAY----DKQEIIPE 144
+K+ L++DK ++A++D+ GK YG+++ +CNAY + ++ +
Sbjct: 279 IKQGLLKDKCVISAMIDMY--GKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDK 336
Query: 145 MIELAKFAKHHIPE 158
+E+ + K E
Sbjct: 337 ALEMFELFKEQTME 350
>sp|Q5HAM0|GPDA_EHRRW Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Ehrlichia
ruminantium (strain Welgevonden) GN=gpsA PE=3 SV=1
Length = 327
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 28/40 (70%)
Query: 5 SHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSM 44
++++ ++I +G++ +K LY++KN +I + L+G LG +
Sbjct: 208 NNAVATVITKGMNEIKTLYIAKNHSIDLHTLIGPSCLGDL 247
>sp|O65727|ERG11_BRANA Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1
Length = 506
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 42/86 (48%)
Query: 81 RWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQE 140
R A L + L+ ++LIE+K + + S+G+ + +T + + C + ++
Sbjct: 157 RQKASSLPTVQLEEGTVKSLIEEKGVIKGVTYKNSAGEETTAFAPLTVVCDGCYSNLRRS 216
Query: 141 IIPEMIELAKFAKHHIPEDHELDDPD 166
+ E+ + ++ ++ +L+DP+
Sbjct: 217 VNDNNAEVISYQVGYVSKNCQLEDPE 242
>sp|Q6PIJ4|NFRKB_MOUSE Nuclear factor related to kappa-B-binding protein OS=Mus musculus
GN=Nfrkb PE=2 SV=1
Length = 1296
Score = 30.4 bits (67), Expect = 6.7, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 72 NPARDPDIRRWAAEGLAYLTLDAEVKE-----ALIEDKPALAALVDVASSGKPA--CTYG 124
+P+R P+ R W + YL + EVKE AL D+ L++ + + + P+
Sbjct: 176 SPSRSPEEREWRTQQ-RYLKVLREVKEECGDTALSSDEEDLSSWLPSSPARSPSPAVPLR 234
Query: 125 VVTTLVNL-CNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRL 172
VV TL DK E+ ++L KHH H+ D PD +T L
Sbjct: 235 VVPTLSTTDMKTADKIELGDSDLKLM-LKKHHEKRKHQPDHPDLLTGDL 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,170,003
Number of Sequences: 539616
Number of extensions: 2575307
Number of successful extensions: 6186
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 6162
Number of HSP's gapped (non-prelim): 36
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)