Query psy14464
Match_columns 175
No_of_seqs 116 out of 121
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 20:33:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3opb_A SWI5-dependent HO expre 100.0 1.2E-33 4.1E-38 270.3 15.8 159 5-175 286-453 (778)
2 3now_A UNC-45 protein, SD10334 100.0 2.1E-32 7.3E-37 262.5 12.3 170 5-174 321-490 (810)
3 4hxt_A De novo protein OR329; 97.4 0.0011 3.7E-08 51.0 10.1 116 13-137 43-159 (252)
4 4db8_A Armadillo-repeat protei 97.1 0.0032 1.1E-07 48.9 9.0 116 14-138 96-212 (252)
5 4hxt_A De novo protein OR329; 97.0 0.0077 2.6E-07 46.1 10.5 118 14-140 128-246 (252)
6 4db6_A Armadillo repeat protei 96.9 0.0044 1.5E-07 47.0 8.4 116 13-138 53-170 (210)
7 4db8_A Armadillo-repeat protei 96.9 0.0078 2.7E-07 46.7 9.8 117 13-137 53-169 (252)
8 4db6_A Armadillo repeat protei 96.7 0.021 7.1E-07 43.2 10.8 113 13-133 95-208 (210)
9 1jdh_A Beta-catenin; beta-cate 96.6 0.0028 9.7E-08 54.3 5.9 118 11-137 14-132 (529)
10 1te4_A Conserved protein MTH18 96.5 0.016 5.3E-07 41.9 8.7 87 16-131 44-130 (131)
11 2z6g_A B-catenin; FULL-length, 96.5 0.011 3.8E-07 55.5 9.5 118 10-134 146-263 (780)
12 2z6h_A Catenin beta-1, beta-ca 96.3 0.0078 2.7E-07 54.4 7.0 114 13-133 13-126 (644)
13 3ltm_A Alpha-REP4; protein eng 96.0 0.026 8.9E-07 43.0 7.8 91 14-133 81-171 (211)
14 3opb_A SWI5-dependent HO expre 95.9 0.054 1.9E-06 52.3 11.1 126 9-140 599-733 (778)
15 4b8j_A Importin subunit alpha- 95.8 0.021 7.1E-07 49.7 7.2 113 14-133 74-188 (528)
16 1jdh_A Beta-catenin; beta-cate 95.7 0.09 3.1E-06 44.9 10.7 115 13-139 226-343 (529)
17 3ul1_B Importin subunit alpha- 95.6 0.037 1.3E-06 48.9 8.0 128 7-137 135-305 (510)
18 3ltm_A Alpha-REP4; protein eng 95.5 0.038 1.3E-06 42.1 6.9 90 15-133 51-140 (211)
19 3ltj_A Alpharep-4; protein eng 95.3 0.047 1.6E-06 41.2 6.9 30 14-43 45-74 (201)
20 3ltj_A Alpharep-4; protein eng 95.1 0.1 3.4E-06 39.4 8.0 91 14-133 76-166 (201)
21 2jdq_A Importin alpha-1 subuni 95.0 0.076 2.6E-06 44.2 7.8 113 13-133 148-262 (450)
22 3tpo_A Importin subunit alpha- 95.0 0.062 2.1E-06 47.5 7.6 128 7-137 154-324 (529)
23 1wa5_B Importin alpha subunit; 94.6 0.05 1.7E-06 47.5 5.9 113 13-133 214-327 (530)
24 2z6h_A Catenin beta-1, beta-ca 94.4 0.27 9.2E-06 44.3 10.3 113 14-138 224-339 (644)
25 1xm9_A Plakophilin 1; armadill 94.3 0.055 1.9E-06 47.3 5.6 116 11-136 41-173 (457)
26 4b8j_A Importin subunit alpha- 94.3 0.059 2E-06 46.8 5.7 112 14-133 202-314 (528)
27 2jdq_A Importin alpha-1 subuni 94.3 0.15 5.2E-06 42.3 8.0 114 12-133 190-304 (450)
28 3now_A UNC-45 protein, SD10334 94.2 0.051 1.7E-06 52.5 5.5 117 10-133 618-736 (810)
29 1oyz_A Hypothetical protein YI 94.2 0.21 7.3E-06 39.5 8.3 101 15-133 55-156 (280)
30 1wa5_B Importin alpha subunit; 94.1 0.17 5.7E-06 44.2 8.1 120 10-138 253-373 (530)
31 1oyz_A Hypothetical protein YI 93.8 0.16 5.3E-06 40.3 6.8 90 17-133 131-220 (280)
32 2vgl_B AP-2 complex subunit be 93.7 0.13 4.3E-06 46.4 6.7 105 15-138 87-192 (591)
33 2z6g_A B-catenin; FULL-length, 93.4 0.4 1.4E-05 44.9 9.9 113 14-138 360-475 (780)
34 3nmw_A APC variant protein; AR 93.2 0.14 4.8E-06 44.1 6.0 115 13-133 125-246 (354)
35 1xm9_A Plakophilin 1; armadill 92.9 0.18 6.1E-06 44.0 6.3 112 15-136 3-117 (457)
36 3nmz_A APC variant protein; pr 92.6 0.11 3.7E-06 46.7 4.5 117 13-136 241-364 (458)
37 1te4_A Conserved protein MTH18 92.3 0.044 1.5E-06 39.5 1.3 89 15-133 13-101 (131)
38 3l6x_A Catenin delta-1; cateni 92.0 0.18 6.2E-06 46.8 5.5 117 12-137 88-223 (584)
39 3ul1_B Importin subunit alpha- 91.7 0.045 1.5E-06 48.3 0.9 112 14-133 316-429 (510)
40 3tt9_A Plakophilin-2; cell adh 91.6 0.13 4.4E-06 42.4 3.6 115 13-137 51-182 (233)
41 1xqr_A HSPBP1 protein; armadil 91.6 0.28 9.6E-06 41.2 5.7 115 13-136 123-239 (296)
42 3tt9_A Plakophilin-2; cell adh 90.9 2.4 8.3E-05 34.6 10.6 110 13-133 93-228 (233)
43 3b2a_A TON_1937, putative unch 90.4 1.7 5.8E-05 37.1 9.4 148 9-174 70-238 (265)
44 3l6x_A Catenin delta-1; cateni 89.9 0.32 1.1E-05 45.2 4.8 114 19-138 313-435 (584)
45 3tpo_A Importin subunit alpha- 88.5 0.57 1.9E-05 41.2 5.3 111 17-133 79-190 (529)
46 2vgl_A Adaptor protein complex 84.6 0.58 2E-05 42.9 3.3 109 9-133 106-215 (621)
47 3nmw_A APC variant protein; AR 84.3 1.8 6.1E-05 37.1 6.1 113 14-133 170-291 (354)
48 1xqr_A HSPBP1 protein; armadil 83.5 1.4 4.9E-05 36.9 5.0 113 13-133 80-195 (296)
49 3nmz_A APC variant protein; pr 77.2 1.1 3.7E-05 40.2 2.3 120 13-139 329-454 (458)
50 1w63_A Adapter-related protein 75.8 11 0.00038 34.0 8.6 114 11-132 310-449 (618)
51 1w63_A Adapter-related protein 70.8 15 0.00052 33.1 8.3 74 15-100 510-585 (618)
52 4ady_A RPN2, 26S proteasome re 69.2 13 0.00043 36.9 7.8 53 76-138 591-644 (963)
53 3tjz_B Coatomer subunit gamma; 68.6 21 0.00073 30.9 8.4 99 16-133 106-204 (355)
54 1b3u_A Protein (protein phosph 65.9 9.4 0.00032 32.4 5.5 69 13-91 163-231 (588)
55 2qk2_A LP04448P; mini spindles 65.3 26 0.00089 26.9 7.6 101 23-133 24-126 (242)
56 4fdd_A Transportin-1; heat rep 64.7 5.3 0.00018 36.8 3.9 113 17-134 131-244 (852)
57 4fdd_A Transportin-1; heat rep 57.5 9.7 0.00033 35.0 4.3 112 12-133 357-470 (852)
58 1ibr_B P95, importin beta-1 su 57.2 40 0.0014 27.5 7.7 114 17-138 38-163 (462)
59 4ady_A RPN2, 26S proteasome re 54.0 23 0.00077 35.1 6.5 62 16-92 474-537 (963)
60 2vgl_B AP-2 complex subunit be 50.8 47 0.0016 29.5 7.6 69 16-95 463-535 (591)
61 1b3u_A Protein (protein phosph 46.4 55 0.0019 27.6 7.1 29 60-90 163-191 (588)
62 2vgl_A Adaptor protein complex 46.3 53 0.0018 29.8 7.3 35 10-44 325-359 (621)
63 1ibr_B P95, importin beta-1 su 46.3 46 0.0016 27.1 6.4 69 16-89 130-200 (462)
64 1u6g_C TIP120 protein, CAND1; 44.9 70 0.0024 30.6 8.2 107 17-134 51-163 (1230)
65 2qk2_A LP04448P; mini spindles 41.7 58 0.002 24.9 6.0 110 14-138 56-166 (242)
66 1eoq_A GAG polyprotein capsid 41.5 80 0.0027 23.0 6.2 76 51-126 3-84 (96)
67 2bpt_A Importin beta-1 subunit 40.3 81 0.0028 28.2 7.4 71 17-90 137-208 (861)
68 3b2a_A TON_1937, putative unch 37.7 70 0.0024 27.2 6.2 31 15-45 151-181 (265)
69 3grl_A General vesicular trans 34.3 1.8E+02 0.0062 27.5 9.0 122 10-133 56-194 (651)
70 2bpt_A Importin beta-1 subunit 34.0 1.2E+02 0.004 27.1 7.4 111 13-133 410-528 (861)
71 3grl_A General vesicular trans 33.8 30 0.001 32.8 3.6 74 65-139 64-155 (651)
72 1qrj_B HTLV-I capsid protein; 33.1 1.9E+02 0.0064 23.2 8.1 70 33-102 101-172 (199)
73 1qgr_A Protein (importin beta 29.1 45 0.0015 29.9 3.9 70 16-90 130-201 (876)
74 4gmo_A Putative uncharacterize 29.1 88 0.003 28.6 5.9 91 14-114 35-128 (684)
75 3ds4_A HIV-1 capsid protein; H 28.2 1.4E+02 0.0047 20.7 5.6 67 51-117 8-76 (86)
76 3tir_A ROUS sarcoma virus caps 27.1 2.3E+02 0.0078 23.2 7.5 70 33-102 135-207 (226)
77 3tjz_B Coatomer subunit gamma; 26.6 1.6E+02 0.0056 25.2 6.9 34 105-139 250-283 (355)
78 2jtt_C Calcyclin-binding prote 25.9 39 0.0013 20.2 2.0 17 16-32 9-25 (35)
79 1baj_A GAG polyprotein; capsid 24.7 1.6E+02 0.0055 20.9 5.5 52 51-102 9-60 (101)
80 3o48_A Mitochondria fission 1 24.7 2E+02 0.0069 21.7 6.3 41 4-44 51-94 (134)
81 4gmo_A Putative uncharacterize 22.6 66 0.0023 29.4 3.8 59 75-133 46-104 (684)
82 1u6g_C TIP120 protein, CAND1; 21.8 2.2E+02 0.0076 27.2 7.4 109 17-133 89-203 (1230)
83 1eia_A EIAV capsid protein P26 21.7 2.7E+02 0.0093 22.4 6.9 54 49-102 136-189 (207)
84 1qgr_A Protein (importin beta 21.6 2.7E+02 0.0091 24.8 7.5 37 90-133 81-117 (876)
85 2dhy_A CUE domain-containing p 20.3 1.8E+02 0.006 19.4 4.7 40 43-84 2-41 (67)
No 1
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=270.34 Aligned_cols=159 Identities=16% Similarity=0.198 Sum_probs=119.2
Q ss_pred hhhHH-HHHHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHH
Q psy14464 5 SHSIT-SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWA 83 (175)
Q Consensus 5 ~~~~~-~i~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~a 83 (175)
.+.|| +|.+++++||..++++ +.+|++|+|+|||||++++. +++++.+|+++|++||.++ +.+.++||
T Consensus 286 ~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~-------~~~si~~La~~~~~~L~~~--~~~~~~~A 354 (778)
T 3opb_A 286 DETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKL-------TCINLKQLSEIFINAISRR--IVPKVEMS 354 (778)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTC-------TTCCHHHHHHHHHHHTTTC--CHHHHHHH
T ss_pred CcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCC-------CcCcHHHHHHHHHHHHhcC--CccHHHHH
Confidence 34454 5778899999999965 79999999999999997542 4678999999999999876 44558999
Q ss_pred HhhhhhhccCHHHHHHHhhCHHHHHHHHHHhhc-CCCCcchhhhHHHHhcccCCCCC--CcchHHHHHHhhhcCCCCCCC
Q psy14464 84 AEGLAYLTLDAEVKEALIEDKPALAALVDVASS-GKPACTYGVVTTLVNLCNAYDKQ--EIIPEMIELAKFAKHHIPEDH 160 (175)
Q Consensus 84 iEGLAYlSL~p~VKE~L~~D~~~Lk~L~~llk~-~d~s~~YG~lsIl~NLTn~Y~~~--e~~~~l~~L~~ya~~~~pe~~ 160 (175)
||||||+|++|+|||+|++|+.||+.|+++++. .+++++||+++||+||| .|+|+ +++++|.+|++||++|.|+.|
T Consensus 355 vEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt-~~~~~~~~e~~~l~~Lk~~A~~~~p~~~ 433 (778)
T 3opb_A 355 VEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLS-TLPEEXXXXXXXXXXXXXXXXXXXPAAD 433 (778)
T ss_dssp HHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTT-CCCCCCCCCCC-----------------
T ss_pred HHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-CCCcccchhhhhhhhhhhhccccCcccC
Confidence 999999999999999999999999999999995 79999999999999999 55553 346799999999999999888
Q ss_pred CCCC----hHHHHH-HhhhC
Q psy14464 161 ELDD----PDFVTK-RLLVL 175 (175)
Q Consensus 161 pld~----d~~V~~-R~~~L 175 (175)
|.|+ |++|.. ||+.+
T Consensus 434 ~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 434 KVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp -CCTHHHHHHHHHHHHHHHT
T ss_pred cccccccchHHHHHHHHHHH
Confidence 8555 678777 77653
No 2
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=2.1e-32 Score=262.52 Aligned_cols=170 Identities=71% Similarity=1.167 Sum_probs=159.0
Q ss_pred hhhHHHHHHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHH
Q psy14464 5 SHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAA 84 (175)
Q Consensus 5 ~~~~~~i~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~ai 84 (175)
.+.+.+|+.+|++||..+|+++++.+|.+|+++|||+++++++|.+++++++++++.|++.|+++|.+++.|.+.++||+
T Consensus 321 ~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~Av 400 (810)
T 3now_A 321 KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAA 400 (810)
T ss_dssp HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999987778778899999999999999999988756778999999
Q ss_pred hhhhhhccCHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcccCCCCCCcchHHHHHHhhhcCCCCCCCCCCC
Q psy14464 85 EGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDD 164 (175)
Q Consensus 85 EGLAYlSL~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn~Y~~~e~~~~l~~L~~ya~~~~pe~~pld~ 164 (175)
|||+|||++|+||++++.|..+++.|++++++.+.+++||+++||.|||+.|++++..++|.+|++|+++|+|++||+|+
T Consensus 401 eaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~ 480 (810)
T 3now_A 401 DGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDD 480 (810)
T ss_dssp HHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHH
T ss_pred HHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcccccccc
Confidence 99999999999999999999999999999999999999999999999997788888888999999999999999999999
Q ss_pred hHHHHHHhhh
Q psy14464 165 PDFVTKRLLV 174 (175)
Q Consensus 165 d~~V~~R~~~ 174 (175)
++||++||+.
T Consensus 481 ~~~v~~r~~~ 490 (810)
T 3now_A 481 VDFINKRITV 490 (810)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 3
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.45 E-value=0.0011 Score=50.97 Aligned_cols=116 Identities=20% Similarity=0.292 Sum_probs=89.7
Q ss_pred HhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhc-
Q psy14464 13 KQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT- 91 (175)
Q Consensus 13 ~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlS- 91 (175)
..+++.|-.++++.++.++..|+-+|+.+..... ..+.... .......+..+|.+ .+.+.+..|+..|.+++
T Consensus 43 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~---~~~~i~~l~~ll~~--~~~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 43 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPD--EAIKAIV---DAGGVEVLVKLLTS--TDSEVQKEAARALANIAS 115 (252)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--HHHHHHH---HTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh--HHHHHHH---HCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHc
Confidence 3577999999999999999999999999986411 0000000 01245566677754 36788999999999999
Q ss_pred cCHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcccCCC
Q psy14464 92 LDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYD 137 (175)
Q Consensus 92 L~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn~Y~ 137 (175)
-.++.++.+.+ ...+..|++++++.+..+...++.++.||+ ...
T Consensus 116 ~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~-~~~ 159 (252)
T 4hxt_A 116 GPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIA-SGP 159 (252)
T ss_dssp SCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSC
T ss_pred CCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCC
Confidence 78999998887 568999999999888889999999999999 543
No 4
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.06 E-value=0.0032 Score=48.95 Aligned_cols=116 Identities=26% Similarity=0.251 Sum_probs=86.7
Q ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc-
Q psy14464 14 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL- 92 (175)
Q Consensus 14 ~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL- 92 (175)
.|++.|-.++++.++.++..|+-+|+.|....... .... -.......+.++|.++ +.+.+..|+..|..++.
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~---~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--IQAV---IDAGALPALVQLLSSP--NEQILQEALWALSNIASG 168 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH--HHHH---HHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH--HHHH---HHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcC
Confidence 37899999999999999999999999997531100 0000 0112456677777543 66789999999999998
Q ss_pred CHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcccCCCC
Q psy14464 93 DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDK 138 (175)
Q Consensus 93 ~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn~Y~~ 138 (175)
.++.++.+.. ..++..|++++++.+..+...++.+|.||+ ...+
T Consensus 169 ~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~ 212 (252)
T 4db8_A 169 GNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIA-SGGN 212 (252)
T ss_dssp CHHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHT-TSCH
T ss_pred ChHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHh-cCCH
Confidence 4566665554 578999999999888889999999999999 4433
No 5
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.98 E-value=0.0077 Score=46.10 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=89.0
Q ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc-
Q psy14464 14 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL- 92 (175)
Q Consensus 14 ~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL- 92 (175)
.+++.|-.++.+.++.++..|+-+|+.|....+ ....... .......+..+|.+ .+.+.+..|+..|.-++.
T Consensus 128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~---~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~ 200 (252)
T 4hxt_A 128 GGVEVLVKLLTSTDSEVQKEAARALANIASGPD--EAIKAIV---DAGGVEVLVKLLTS--TDSEVQKEAARALANIASG 200 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--HHHHHHH---HTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH--HHHHHHH---HCcCHHHHHHHHCC--CCHHHHHHHHHHHHHHHcC
Confidence 467889999999999999999999999986311 0000000 11255667777754 366789999999999987
Q ss_pred CHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcccCCCCCC
Q psy14464 93 DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQE 140 (175)
Q Consensus 93 ~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn~Y~~~e 140 (175)
.++.++.+.+ ..+++.|++++++.+..+..-.+.++.||+ .+.+.+
T Consensus 201 ~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~ 246 (252)
T 4hxt_A 201 PTSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRALENIK-SGGWLE 246 (252)
T ss_dssp BHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH-HTCBCC
T ss_pred CHHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHHHHHHH-cCCCcc
Confidence 7887777765 568899999999888889999999999999 555543
No 6
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.91 E-value=0.0044 Score=46.99 Aligned_cols=116 Identities=27% Similarity=0.261 Sum_probs=85.6
Q ss_pred HhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCC-CCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhc
Q psy14464 13 KQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRP-FADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT 91 (175)
Q Consensus 13 ~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~-~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlS 91 (175)
..+++.|-.++++.++.++..|+-+|+.+..... ..+.. ... .....+..+|.++ +.+.+..|+..|..++
T Consensus 53 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~----g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~ 124 (210)
T 4db6_A 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQIQAVIDA----GALPALVQLLSSP--NEQILQEALWALSNIA 124 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--HHHHHHHHT----TCHHHHHHHTTCS--CHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc--HHHHHHHHC----CCHHHHHHHHcCC--cHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999975211 00000 001 1334566667543 6778999999999999
Q ss_pred c-CHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcccCCCC
Q psy14464 92 L-DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDK 138 (175)
Q Consensus 92 L-~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn~Y~~ 138 (175)
. .++.++.+. +..++..|++++++.+..+..-++.+|.||+ ...+
T Consensus 125 ~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~-~~~~ 170 (210)
T 4db6_A 125 SGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIA-SGGN 170 (210)
T ss_dssp TSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSCH
T ss_pred cCCHHHHHHHH-HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCc
Confidence 5 566666665 5679999999999888889999999999999 5433
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.88 E-value=0.0078 Score=46.73 Aligned_cols=117 Identities=24% Similarity=0.217 Sum_probs=88.2
Q ss_pred HhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc
Q psy14464 13 KQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL 92 (175)
Q Consensus 13 ~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL 92 (175)
..+++.|-.++++.++.++..|+-+|+.+..... ..+.... .......+..+|.++ +.+.+..|+..|..++.
T Consensus 53 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~i~---~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~ 125 (252)
T 4db8_A 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQIQAVI---DAGALPALVQLLSSP--NEQILQEALWALSNIAS 125 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--HHHHHHH---HTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH--HHHHHHH---HcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhc
Confidence 3466889999998899999999999999986311 0000000 012455667777553 66789999999999999
Q ss_pred CHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcccCCC
Q psy14464 93 DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYD 137 (175)
Q Consensus 93 ~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn~Y~ 137 (175)
.++.+.....+...+..|++++.+.+..+...++.+|.||+ ...
T Consensus 126 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~ 169 (252)
T 4db8_A 126 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGG 169 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT-TSC
T ss_pred CCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH-cCC
Confidence 99999444456678999999998888888999999999999 433
No 8
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.71 E-value=0.021 Score=43.16 Aligned_cols=113 Identities=25% Similarity=0.220 Sum_probs=86.6
Q ss_pred HhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc
Q psy14464 13 KQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL 92 (175)
Q Consensus 13 ~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL 92 (175)
..+++.|-.++++.++.++..|+-+|+.+...... ..... -.......+..+|.++ +.+.+.+|+..|..++.
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~---~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNE--QIQAV---IDAGALPALVQLLSSP--NEQILQEALWALSNIAS 167 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH--HHHHH---HHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHH--HHHHH---HHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHc
Confidence 34679999999999999999999999999863110 00000 0113456666777543 66789999999999998
Q ss_pred C-HHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 93 D-AEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 93 ~-p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
. ++.++.+.+. .++..|++++.+.+..+..-.+.++.||+
T Consensus 168 ~~~~~~~~~~~~-g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 168 GGNEQKQAVKEA-GALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp SCHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHC-CCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 8 8888877665 58999999999888888999999999998
No 9
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.60 E-value=0.0028 Score=54.26 Aligned_cols=118 Identities=21% Similarity=0.230 Sum_probs=89.2
Q ss_pred HHHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCC-CCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhh
Q psy14464 11 IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRP-FADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAY 89 (175)
Q Consensus 11 i~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~-~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAY 89 (175)
+-..+++.|-.+++++++.+|..|+..|+++..... .+.. ... ......+.++|.+ +.+.+.+..|+..|..
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~---~~~~~~~~---~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ 86 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA---SRHAIMRS---PQMVSAIVRTMQN-TNDVETARCTAGTLHN 86 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH---HHHHHHTC---HHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc---cHHHHHhC---cchHHHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence 445567888899999999999999999999986421 1100 111 2344455555543 2366788999999999
Q ss_pred hccCHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcccCCC
Q psy14464 90 LTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYD 137 (175)
Q Consensus 90 lSL~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn~Y~ 137 (175)
++..++.++.+.+. ..+..|++++++.+..+.+..+.++.||+ ...
T Consensus 87 ls~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~ 132 (529)
T 1jdh_A 87 LSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLL-LHQ 132 (529)
T ss_dssp HTTSHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHH-HHC
T ss_pred HHcCchhHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCC
Confidence 99999999999876 88999999999888889999999999998 543
No 10
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.53 E-value=0.016 Score=41.93 Aligned_cols=87 Identities=18% Similarity=0.117 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccCHH
Q psy14464 16 VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAE 95 (175)
Q Consensus 16 ~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~p~ 95 (175)
++.|..++++.++.+|..|+-+|.+++.. .....+.+.|.+ .+...|.+|++.|..+.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~~----------------~a~~~L~~~L~d--~~~~VR~~A~~aL~~~~---- 101 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQDE----------------RAVEPLIKLLED--DSGFVRSGAARSLEQIG---- 101 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCSH----------------HHHHHHHHHHHH--CCTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCH----------------HHHHHHHHHHcC--CCHHHHHHHHHHHHHhC----
Confidence 45566666666677777777777766531 223444444432 24556777777777653
Q ss_pred HHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHh
Q psy14464 96 VKEALIEDKPALAALVDVASSGKPACTYGVVTTLVN 131 (175)
Q Consensus 96 VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~N 131 (175)
|+..+..|++++++.+..+.+.++..|.+
T Consensus 102 -------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 102 -------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 55666677777765555555555555443
No 11
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.49 E-value=0.011 Score=55.50 Aligned_cols=118 Identities=20% Similarity=0.237 Sum_probs=91.3
Q ss_pred HHHHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhh
Q psy14464 10 SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAY 89 (175)
Q Consensus 10 ~i~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAY 89 (175)
.|...+++.|-.++.+.+..+|..|+.+|+.|..... ++.... ........+.++|.++ .+.+.+..|+..|..
T Consensus 146 ~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~---~~~~i~--~~~~~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~ 219 (780)
T 2z6g_A 146 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA---SRHAIM--RSPQMVSAIVRTMQNT-NDVETARCTSGTLHN 219 (780)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH---HHHHHT--TCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh---hHHHHH--hccChHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4556678999999999999999999999999986421 111111 1123445555555433 366789999999999
Q ss_pred hccCHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhccc
Q psy14464 90 LTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCN 134 (175)
Q Consensus 90 lSL~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn 134 (175)
++..++.++.+... ..++.|++++++.+..+.+..+.+|.||+.
T Consensus 220 Ls~~~~~~~~i~~~-g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 220 LSHHREGLLAIFKS-GGIPALVNMLGSPVDSVLFHAITTLHNLLL 263 (780)
T ss_dssp HHTSHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HhCCchhHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 99999999988876 889999999998888899999999999993
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.29 E-value=0.0078 Score=54.39 Aligned_cols=114 Identities=22% Similarity=0.240 Sum_probs=89.5
Q ss_pred HhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc
Q psy14464 13 KQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL 92 (175)
Q Consensus 13 ~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL 92 (175)
..+++.|-.+++++++.+|..|+..|+.|..... ++.... ........+.+.|.+ +.+.+.+..|+..|..++.
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~---~~~~i~--~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~ 86 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA---SRHAIM--RSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSH 86 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT---HHHHHT--TCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTT
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh---hHHHHH--hccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhc
Confidence 3457889999999999999999999999986421 111111 112445556666654 3466788999999999999
Q ss_pred CHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 93 DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 93 ~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
.++.++.+.+. ..+..|++++++.+..+.+-.+.+|.||+
T Consensus 87 ~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~ 126 (644)
T 2z6h_A 87 HREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLL 126 (644)
T ss_dssp SHHHHHHHHTT-THHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHc-CCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999998876 88999999999888889999999999998
No 13
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.01 E-value=0.026 Score=43.01 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=61.5
Q ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccC
Q psy14464 14 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLD 93 (175)
Q Consensus 14 ~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~ 93 (175)
..++.|..++++.++.+|..|+-+|.+++.. +....+..+|.+ .+...|..|+++|+.+.
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~----------------~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~-- 140 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGDE----------------RAVEPLIKALKD--EDWFVRIAAAFALGEIG-- 140 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------------GGHHHHHHHTTC--SSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------------HHHHHHHHHHhC--CCHHHHHHHHHHHHHcC--
Confidence 3567888888888889999999999998742 223445556633 35567788888887763
Q ss_pred HHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 94 AEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 94 p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
++..+..|+.++.+.+..+.+.++..+.++.
T Consensus 141 ---------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 141 ---------DERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp ---------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ---------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3445566666665555556666666666665
No 14
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.054 Score=52.30 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=97.5
Q ss_pred HHHHH--hhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCC-CCCCCCCHHHH---HHHHHHhhcCCCCCchhhhH
Q psy14464 9 TSIIK--QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASI-RPFADGSTRKL---AEACRRFLVNPARDPDIRRW 82 (175)
Q Consensus 9 ~~i~~--~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~-~~~~~~s~~~L---a~~~~~~L~~~~~~~~~~~~ 82 (175)
..|+. .+++.|..+..+.++.||--|+-.+|-|..... .+ ..+.+.....= .+.+-.++. ..|.+.|+.
T Consensus 599 ~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e---~i~~k~~~~~~~~~~~rL~lLV~Ll~--s~D~~~r~A 673 (778)
T 3opb_A 599 KHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL---TIAAKFFNLENPQSLRNFNILVKLLQ--LSDVESQRA 673 (778)
T ss_dssp HHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG---GTGGGTSCCSSHHHHHHHHHHHHGGG--CSCHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH---HHHHHHHhhcCchhhccHHHHHHHHc--CCCHHHHHH
Confidence 45676 478999999999999999999999999997422 11 12222211121 234445553 357889999
Q ss_pred HHhhhhhh-ccCHHHHHHHhhCHHHHHHHHHHhhc--CCCCcchhhhHHHHhcccCCCCCC
Q psy14464 83 AAEGLAYL-TLDAEVKEALIEDKPALAALVDVASS--GKPACTYGVVTTLVNLCNAYDKQE 140 (175)
Q Consensus 83 aiEGLAYl-SL~p~VKE~L~~D~~~Lk~L~~llk~--~d~s~~YG~lsIl~NLTn~Y~~~e 140 (175)
|.-.||.+ |-+|.+-..+.+.+.+++.|+.++.. .+..+..-++.++-||. .|-|.+
T Consensus 674 AagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~-~~~~~~ 733 (778)
T 3opb_A 674 VAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF-EVIPDN 733 (778)
T ss_dssp HHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-TTCCST
T ss_pred HHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HhhccC
Confidence 99999999 57999999999999999999999998 68899999999999999 787754
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.81 E-value=0.021 Score=49.68 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=83.1
Q ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCC-CCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc
Q psy14464 14 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRP-FADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL 92 (175)
Q Consensus 14 ~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~-~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL 92 (175)
..++.|-..+.++++.++..|+..|+++-+....+ +... ... .....+..+|.++ .+.+.+..|+..|..++-
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~-~~~~~~~~----g~v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~ 147 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSP-PIEEVIQS----GVVPRFVQFLTRE-DFPQLQFEAAWALTNIAS 147 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSC-CHHHHHHT----TCHHHHHHHHTCT-TCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCc-hHHHHHHC----CCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhC
Confidence 34677777778889999999999999997642211 1111 111 2344556667443 336788999999999998
Q ss_pred C-HHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 93 D-AEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 93 ~-p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
. ++.+..++.. ..+..|+.++++.+..+...++.+|.||+
T Consensus 148 ~~~~~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 148 GTSENTKVVIDH-GAVPIFVKLLGSSSDDVREQAVWALGNVA 188 (528)
T ss_dssp SCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhC-CcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 6 7888777655 78999999999888888999999999998
No 16
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.72 E-value=0.09 Score=44.86 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=86.8
Q ss_pred HhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc
Q psy14464 13 KQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL 92 (175)
Q Consensus 13 ~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL 92 (175)
..+++.|-.++++.++.++..|+-+|+.|....+. .+ ........+.++|.+ .+.+.+..|+..|++++-
T Consensus 226 ~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-------~~-~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-------QE-GMEGLLGTLVQLLGS--DDINVVTCAAGILSNLTC 295 (529)
T ss_dssp TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT-------CS-CCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh-------hH-HHHhHHHHHHHHHcC--CCHHHHHHHHHHHHHHhc
Confidence 35578888888888888888888888888764211 11 234677788888843 477889999999999998
Q ss_pred C-HHHHHHHhhCHHHHHHHHHHhhcC--CCCcchhhhHHHHhcccCCCCC
Q psy14464 93 D-AEVKEALIEDKPALAALVDVASSG--KPACTYGVVTTLVNLCNAYDKQ 139 (175)
Q Consensus 93 ~-p~VKE~L~~D~~~Lk~L~~llk~~--d~s~~YG~lsIl~NLTn~Y~~~ 139 (175)
. ++.++.+.+. ..+..|++++... +..+....+.++.||+ ...|+
T Consensus 296 ~~~~~~~~~~~~-~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~-~~~~~ 343 (529)
T 1jdh_A 296 NNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQE 343 (529)
T ss_dssp TCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSSTT
T ss_pred CCHHHHHHHHHc-CChHHHHHHHHccCCHHHHHHHHHHHHHHHH-cCCch
Confidence 6 6788888755 4789999999753 3578899999999999 55443
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.57 E-value=0.037 Score=48.91 Aligned_cols=128 Identities=14% Similarity=0.218 Sum_probs=90.1
Q ss_pred hHHHHHHh-hHHHHHHHHhcCCchhHHHHHHHHHHhcCC-----------CCCCC-----CC---CC-------------
Q psy14464 7 SITSIIKQ-GVDILKRLYMSKNENIRVRALVGLCKLGSM-----------GGSDA-----SI---RP------------- 53 (175)
Q Consensus 7 ~~~~i~~~-g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~-----------~~~d~-----~~---~~------------- 53 (175)
.+..|+.. +++.|-.++++.++.+|..|+-+|+.|... |+.+. .. ..
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 34456655 479999999999999999999999888632 11000 00 00
Q ss_pred -------CCCCC---HHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccCHHHHHHHhhCHHHHHHHHHHhhcCCCCcch
Q psy14464 54 -------FADGS---TRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTY 123 (175)
Q Consensus 54 -------~~~~s---~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~Y 123 (175)
..... ...+...+.++|.+ .+.+.+.+|+..|+|++-.++-+..++.+...+..|++++...+..+..
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~--~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 292 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHH--NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 292 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhc--CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhh
Confidence 00001 12223334444433 4667889999999999998888877888889999999999988888999
Q ss_pred hhhHHHHhcccCCC
Q psy14464 124 GVVTTLVNLCNAYD 137 (175)
Q Consensus 124 G~lsIl~NLTn~Y~ 137 (175)
..+.++.||+ +..
T Consensus 293 ~al~aL~nl~-~~~ 305 (510)
T 3ul1_B 293 PALRAIGNIV-TGT 305 (510)
T ss_dssp HHHHHHHHHT-TSC
T ss_pred HHHHHHHHhh-cCC
Confidence 9999999998 443
No 18
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.51 E-value=0.038 Score=42.09 Aligned_cols=90 Identities=19% Similarity=0.187 Sum_probs=52.1
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccCH
Q psy14464 15 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDA 94 (175)
Q Consensus 15 g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~p 94 (175)
.++.|..++++.++.+|..|+-+|.+++.. +....+.++|.+ .+...|.+|+++|+.+.
T Consensus 51 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~----------------~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~--- 109 (211)
T 3ltm_A 51 AVEPLIKALKDEDAWVRRAAADALGQIGDE----------------RAVEPLIKALKD--EDGWVRQSAAVALGQIG--- 109 (211)
T ss_dssp GHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------------GGHHHHHHHTTC--SSHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhCCH----------------HHHHHHHHHHcC--CCHHHHHHHHHHHHHhC---
Confidence 334444444444445555555555544421 223444555533 35567788888887764
Q ss_pred HHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 95 EVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 95 ~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
++..+..|++++.+.+..+...++..+.++.
T Consensus 110 --------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 110 --------DERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp --------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred --------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 4456677777776666667777777777775
No 19
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.32 E-value=0.047 Score=41.21 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=21.6
Q ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHhcC
Q psy14464 14 QGVDILKRLYMSKNENIRVRALVGLCKLGS 43 (175)
Q Consensus 14 ~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~ 43 (175)
..++.|-.++++.++.+|..|+-+|++++.
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 345667777777777788888888877764
No 20
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.06 E-value=0.1 Score=39.37 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=67.2
Q ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccC
Q psy14464 14 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLD 93 (175)
Q Consensus 14 ~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~ 93 (175)
..++.|..++.+.++.+|..|+-+|.+++.. +....+.++|.+ .+...|.+|+++|+.+.
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------------~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~-- 135 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGDE----------------RAVEPLIKALKD--EDWFVRIAAAFALGEIG-- 135 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------------GGHHHHHHHTTC--SSHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------------HHHHHHHHHHcC--CCHHHHHHHHHHHHHhC--
Confidence 4678888888888899999999999998752 233445556643 36678899999998874
Q ss_pred HHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 94 AEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 94 p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
++..+..|+.++++.+..+.+.++..+.++.
T Consensus 136 ---------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 136 ---------DERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp ---------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ---------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4566777777777666667777777777775
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.01 E-value=0.076 Score=44.18 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=82.0
Q ss_pred HhhHHHHHHHHhc-CCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhc
Q psy14464 13 KQGVDILKRLYMS-KNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT 91 (175)
Q Consensus 13 ~~g~~~Lk~l~~s-~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlS 91 (175)
..+++.|-.++++ .++.++..|+-+|+.+....+.. ...... ..+...+..+|.+ .+.+.+..|+..|.|++
T Consensus 148 ~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~----~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPP-PEFAKV----SPCLNVLSWLLFV--SDTDVLADACWALSYLS 220 (450)
T ss_dssp TTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSC-CCGGGT----GGGHHHHHHHTTC--CCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCC-CCHHHH----HHHHHHHHHHHcc--CCHHHHHHHHHHHHHHH
Confidence 3567888888884 67899999999999998642111 111111 3455566666744 36678899999999999
Q ss_pred cC-HHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 92 LD-AEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 92 L~-p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
-. ++.++.+.. ...+..|+.++...+..+....+.++.||+
T Consensus 221 ~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 262 (450)
T 2jdq_A 221 DGPNDKIQAVID-AGVCRRLVELLMHNDYKVVSPALRAVGNIV 262 (450)
T ss_dssp SSSHHHHHHHHH-TTTHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHH-cCcHHHHHHHHCCCchhHHHHHHHHHHHHh
Confidence 74 555555543 467899999998777788889999999998
No 22
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.00 E-value=0.062 Score=47.47 Aligned_cols=128 Identities=15% Similarity=0.237 Sum_probs=89.1
Q ss_pred hHHHHHHhh-HHHHHHHHhcCCchhHHHHHHHHHHhcCC-----------CCCCC-----CC---CC-------------
Q psy14464 7 SITSIIKQG-VDILKRLYMSKNENIRVRALVGLCKLGSM-----------GGSDA-----SI---RP------------- 53 (175)
Q Consensus 7 ~~~~i~~~g-~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~-----------~~~d~-----~~---~~------------- 53 (175)
+...|+..| ++.|-.++.+.++.++..|+-+|+.|... |+.+. .. ..
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 344555554 68899999999999999999999888642 11000 00 00
Q ss_pred -------CCCCCH---HHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccCHHHHHHHhhCHHHHHHHHHHhhcCCCCcch
Q psy14464 54 -------FADGST---RKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTY 123 (175)
Q Consensus 54 -------~~~~s~---~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~Y 123 (175)
...... ..+...+.++|.+ .+.+.+.+|+-.|+|++-.++-+-.++.+...+..|++++.+.+..+..
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~--~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 311 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLLHH--NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 311 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHhcC--CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHH
Confidence 000011 1222333444432 4667888999999999998887777888889999999999988888889
Q ss_pred hhhHHHHhcccCCC
Q psy14464 124 GVVTTLVNLCNAYD 137 (175)
Q Consensus 124 G~lsIl~NLTn~Y~ 137 (175)
-.+.++.||. +..
T Consensus 312 ~a~~aL~nl~-~~~ 324 (529)
T 3tpo_A 312 PALRAIGNIV-TGT 324 (529)
T ss_dssp HHHHHHHHHT-TSC
T ss_pred HHHHHHHHHH-ccc
Confidence 9999999998 543
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=94.60 E-value=0.05 Score=47.49 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=82.7
Q ss_pred HhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc
Q psy14464 13 KQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL 92 (175)
Q Consensus 13 ~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL 92 (175)
..+++.|-.++.+.+..++..|+-+|+.|....... .. ......+...+..+|.+ .+.+.+..|+..|.+++-
T Consensus 214 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~--~~---~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 214 CNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ--PD---WSVVSQALPTLAKLIYS--MDTETLVDACWAISYLSD 286 (530)
T ss_dssp TTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC--CC---HHHHGGGHHHHHHHTTC--CCHHHHHHHHHHHHHHHS
T ss_pred cCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC--Cc---HHHHHhHHHHHHHHHcC--CCHHHHHHHHHHHHHHhC
Confidence 356788888888888889999999999988642111 11 11123455666777754 367788999999999996
Q ss_pred C-HHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 93 D-AEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 93 ~-p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
. ++..+.+.. ...+..|+.++...+..+...++.+|.||+
T Consensus 287 ~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 287 GPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp SCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence 5 555555543 467899999998877788888999999998
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=94.35 E-value=0.27 Score=44.27 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=85.3
Q ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccC
Q psy14464 14 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLD 93 (175)
Q Consensus 14 ~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~ 93 (175)
.+++.|-.++++.+..++..|+-+|..|..... . .+ ....+...+.++|.+ .+.+.+..|+..|++++-.
T Consensus 224 g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~-~------~~-~~~~~i~~Lv~lL~~--~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 224 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT-K------QE-GMEGLLGTLVQLLGS--DDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp THHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT-T------CC-SCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch-h------hh-hhhhHHHHHHHHHcC--CCHHHHHHHHHHHHHHHcC
Confidence 456888888888888898888888988875421 1 11 234677777788854 3678899999999999986
Q ss_pred -HHHHHHHhhCHHHHHHHHHHhhcC-C-CCcchhhhHHHHhcccCCCC
Q psy14464 94 -AEVKEALIEDKPALAALVDVASSG-K-PACTYGVVTTLVNLCNAYDK 138 (175)
Q Consensus 94 -p~VKE~L~~D~~~Lk~L~~llk~~-d-~s~~YG~lsIl~NLTn~Y~~ 138 (175)
++.++.+... ..+..|++++... + ..+....+.++.||+ ...+
T Consensus 294 ~~~~~~~v~~~-g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~-~~~~ 339 (644)
T 2z6h_A 294 NYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQ 339 (644)
T ss_dssp CHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSST
T ss_pred CHHHHHHHHHc-CCHHHHHHHHHccCCcHHHHHHHHHHHHHHh-cCCc
Confidence 5778877764 4899999999763 3 478888999999999 5444
No 25
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=94.34 E-value=0.055 Score=47.27 Aligned_cols=116 Identities=24% Similarity=0.207 Sum_probs=83.5
Q ss_pred HHHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCC-CCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhh
Q psy14464 11 IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPF-ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAY 89 (175)
Q Consensus 11 i~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~-~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAY 89 (175)
+-..|++.|-.++++.++.++..|+-+|..|... ++.++... ..|-+.-| -++|.. +.+.+.++.|+..|..
T Consensus 41 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~~k~~i~~~G~i~~L----v~lL~~-~~~~~~~~~a~~aL~n 113 (457)
T 1xm9_A 41 YQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR--STTNKLETRRQNGIREA----VSLLRR-TGNAEIQKQLTGLLWN 113 (457)
T ss_dssp HHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHH----HHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHH----HHHHhh-CCCHHHHHHHHHHHHH
Confidence 3345679999999999999999999999999863 12111111 22344444 445532 3466889999999999
Q ss_pred hccCHHHHHHHhhCHHHHHHHHHHhh--------c--------CCCCcchhhhHHHHhcccCC
Q psy14464 90 LTLDAEVKEALIEDKPALAALVDVAS--------S--------GKPACTYGVVTTLVNLCNAY 136 (175)
Q Consensus 90 lSL~p~VKE~L~~D~~~Lk~L~~llk--------~--------~d~s~~YG~lsIl~NLTn~Y 136 (175)
++..++.|+.+++ ..+..|++++. + .+..+..-.+.+|.||+ +.
T Consensus 114 La~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs-~~ 173 (457)
T 1xm9_A 114 LSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLS-SA 173 (457)
T ss_dssp HHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHT-TS
T ss_pred HhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHc-cC
Confidence 9999999999987 89999999993 1 12345557888899999 54
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=94.32 E-value=0.059 Score=46.76 Aligned_cols=112 Identities=16% Similarity=0.083 Sum_probs=82.3
Q ss_pred hhHHHHHHHH-hcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc
Q psy14464 14 QGVDILKRLY-MSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL 92 (175)
Q Consensus 14 ~g~~~Lk~l~-~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL 92 (175)
.+++.|-.++ .+.+..++..|+-+|+.|....+.. ... -...+...+..+|.+ .+.+.+..|+..|.|++-
T Consensus 202 g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~--~~~----~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 202 GALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP--SFE----QTRPALPALARLIHS--NDEEVLTDACWALSYLSD 273 (528)
T ss_dssp TCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC--CHH----HHTTHHHHHHHHTTC--CCHHHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC--cHH----HHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHc
Confidence 3566666666 5677889999999999998642111 001 123455666667744 367789999999999998
Q ss_pred CHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 93 DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 93 ~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
.++-+-+..-+...+..|+.++...+..+...++.++.||+
T Consensus 274 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 274 GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 314 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 87766555556678999999999888888889999999999
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.31 E-value=0.15 Score=42.34 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=81.5
Q ss_pred HHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhc
Q psy14464 12 IKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT 91 (175)
Q Consensus 12 ~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlS 91 (175)
...+++.|-.++.+.++.++..|+-+|+.+..... + ...... ...+...+..+|.+ .+.+.+..|+..|.+++
T Consensus 190 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~-~~~~~~---~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~ 262 (450)
T 2jdq_A 190 VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN-D-KIQAVI---DAGVCRRLVELLMH--NDYKVVSPALRAVGNIV 262 (450)
T ss_dssp TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH-H-HHHHHH---HTTTHHHHHHHTTC--SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc-H-HHHHHH---HcCcHHHHHHHHCC--CchhHHHHHHHHHHHHh
Confidence 35678888888888889999999999999976311 0 000000 01234455566643 36678899999999998
Q ss_pred cCH-HHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 92 LDA-EVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 92 L~p-~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
-.. +..+.+ -+...+..|+.++.+.+..+...++.++.||+
T Consensus 263 ~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 263 TGDDIQTQVI-LNCSALQSLLHLLSSPKESIKKEACWTISNIT 304 (450)
T ss_dssp TSCHHHHHHH-HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred hCChHHHHHH-HHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 764 444444 35578999999998877888899999999999
No 28
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.21 E-value=0.051 Score=52.48 Aligned_cols=117 Identities=21% Similarity=0.242 Sum_probs=89.9
Q ss_pred HHHH-hhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhh
Q psy14464 10 SIIK-QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLA 88 (175)
Q Consensus 10 ~i~~-~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLA 88 (175)
.|+. .|++-|-.++.++++.||.-|+-+||.|.... + ...++.++. .-...+-.++.. .+.+.++.|+=.|+
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~--~-~~~~~v~~~--g~l~~Lv~LL~s--~d~~vq~~Aa~ALa 690 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE--D-VIKMFEGNN--DRVKFLALLCED--EDEETATACAGALA 690 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH--H-HHHHHHSSS--SHHHHHHHGGGC--SSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh--H-HHHHHHhcc--CcHHHHHHHhcC--CCHHHHHHHHHHHH
Confidence 3444 46788999999999999999999999998631 1 111222211 233455566644 36778999999999
Q ss_pred hhcc-CHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 89 YLTL-DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 89 YlSL-~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
++|- .++....+..+..++..|++++.+.+..+.+-++.++.|++
T Consensus 691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999 78888888887899999999999988888999999999998
No 29
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=94.18 E-value=0.21 Score=39.49 Aligned_cols=101 Identities=12% Similarity=0.001 Sum_probs=60.4
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc-C
Q psy14464 15 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL-D 93 (175)
Q Consensus 15 g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL-~ 93 (175)
.++.|..++++.++.+|..|+-+|++++... .....+...+.+++.++ .+...|..|++.|+.+.- +
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-----------~~~~~l~~~L~~~~~~d-~~~~vr~~a~~aL~~l~~~~ 122 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKICK-----------KCEDNVFNILNNMALND-KSACVRATAIESTAQRCKKN 122 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-----------TTHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-----------ccchHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccC
Confidence 3456666666667777777777777776421 12344555565444343 356678888888888641 1
Q ss_pred HHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 94 AEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 94 p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
| ..++.++..|+..+.+.+..+.+.++..+.++.
T Consensus 123 ~------~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 123 P------IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp G------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred C------cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 1 013455666666666666666677777777666
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=94.12 E-value=0.17 Score=44.16 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=85.3
Q ss_pred HHHHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhh
Q psy14464 10 SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAY 89 (175)
Q Consensus 10 ~i~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAY 89 (175)
.+...+++.|-.++.+.++.++..|+-+|+.|....+ + ...... ...+...+..+|.+ .+...+..|+..|..
T Consensus 253 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~-~~~~~~---~~~~v~~Lv~lL~~--~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-E-AIQAVI---DVRIPKRLVELLSH--ESTLVQTPALRAVGN 325 (530)
T ss_dssp HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-H-HHHHHH---HTTCHHHHHHGGGC--SCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH-H-HHHHHH---hcCcHHHHHHHHCC--CChhhHHHHHHHHHH
Confidence 3456778899999998889999999999999975311 0 000000 01234556666754 356788999999999
Q ss_pred hccC-HHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcccCCCC
Q psy14464 90 LTLD-AEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDK 138 (175)
Q Consensus 90 lSL~-p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn~Y~~ 138 (175)
++.. ++..+.+. +..++..|+.++...+..+....+.++.||+ ...+
T Consensus 326 l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~-~~~~ 373 (530)
T 1wa5_B 326 IVTGNDLQTQVVI-NAGVLPALRLLLSSPKENIKKEACWTISNIT-AGNT 373 (530)
T ss_dssp HTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCH
T ss_pred HHcCCHHHHHHHH-HcchHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCH
Confidence 9864 55555554 4478999999998888888889999999999 5443
No 31
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=93.82 E-value=0.16 Score=40.32 Aligned_cols=90 Identities=12% Similarity=0.168 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccCHHH
Q psy14464 17 DILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEV 96 (175)
Q Consensus 17 ~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~p~V 96 (175)
+.|...+++.++.+|..|+-+|.+++.. +....+..+|.+ .+...|.+|+++|..+.-
T Consensus 131 ~~L~~~l~d~~~~vR~~a~~aL~~~~~~----------------~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~---- 188 (280)
T 1oyz_A 131 EQSQITAFDKSTNVRRATAFAISVINDK----------------ATIPLLINLLKD--PNGDVRNWAAFAININKY---- 188 (280)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHTC-------------------CCHHHHHHHHTC--SSHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHhcCCH----------------HHHHHHHHHHcC--CCHHHHHHHHHHHHhhcc----
Confidence 4444445555555666566565555431 122334444433 244566677777765531
Q ss_pred HHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 97 KEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 97 KE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
.++..+..|+.++++.+..+....+..+.++.
T Consensus 189 -----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 189 -----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred -----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 14455555666665555555555555555554
No 32
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=93.67 E-value=0.13 Score=46.40 Aligned_cols=105 Identities=25% Similarity=0.303 Sum_probs=80.3
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhh-ccC
Q psy14464 15 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL-TLD 93 (175)
Q Consensus 15 g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYl-SL~ 93 (175)
-++-|.+-+++.|+.+|.+|+-+||+++.. .-...|...+.+.|.+ .++..|+-|+.+|.-+ ...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~------------~~~~~l~~~l~~~L~d--~~~~VRk~A~~al~~i~~~~ 152 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRVD------------KITEYLCEPLRKCLKD--EDPYVRKTAAVCVAKLHDIN 152 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCSG------------GGHHHHHHHHHHHSSC--SCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCChH------------HHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHHHhhC
Confidence 345555566788999999999999999742 1246778888888864 3778899999999866 344
Q ss_pred HHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcccCCCC
Q psy14464 94 AEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDK 138 (175)
Q Consensus 94 p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn~Y~~ 138 (175)
|+ +..|+.++..|.+++.+.+..+.++.+..|.++. ...|
T Consensus 153 p~----~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~-~~~~ 192 (591)
T 2vgl_B 153 AQ----MVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS-ESHP 192 (591)
T ss_dssp CC----CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHT-TSCC
T ss_pred hh----hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHH-hhCC
Confidence 54 3344678899999998888899999999999998 5554
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=93.43 E-value=0.4 Score=44.90 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=84.3
Q ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccC
Q psy14464 14 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLD 93 (175)
Q Consensus 14 ~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~ 93 (175)
.+++.|-.++.+.+..++.-|+-+|..|...... .+ ....+...+..+|.. .+.+.+..|+..|++++..
T Consensus 360 g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~-------~~-~~~~~i~~Lv~lL~~--~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 360 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-------QE-GMEGLLGTLVQLLGS--DDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp THHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT-------CS-CCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTSS
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhccchh-------hh-hhhhHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhC
Confidence 3468888888888888888888899888764321 11 125677777777754 4778899999999999987
Q ss_pred H-HHHHHHhhCHHHHHHHHHHhhc-CCC-CcchhhhHHHHhcccCCCC
Q psy14464 94 A-EVKEALIEDKPALAALVDVASS-GKP-ACTYGVVTTLVNLCNAYDK 138 (175)
Q Consensus 94 p-~VKE~L~~D~~~Lk~L~~llk~-~d~-s~~YG~lsIl~NLTn~Y~~ 138 (175)
+ +.++.++ +...+..|++++.. .+. .+.+..+.+|.||+ ...+
T Consensus 430 ~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~-~~~~ 475 (780)
T 2z6g_A 430 NYKNKMMVC-QVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQ 475 (780)
T ss_dssp CHHHHHHHH-TTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-SSST
T ss_pred CHHHHHHHH-HCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH-hcCc
Confidence 4 6666665 45689999999976 343 78899999999999 5443
No 34
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=93.22 E-value=0.14 Score=44.09 Aligned_cols=115 Identities=18% Similarity=0.076 Sum_probs=82.0
Q ss_pred Hhh-HHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCC-CCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhh
Q psy14464 13 KQG-VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRP-FADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL 90 (175)
Q Consensus 13 ~~g-~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~-~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYl 90 (175)
..| ++.|-.++.++++.++.-|+-+|.-|... ..+.++.. ...|-+.- +-++|.+. .+.+.++.|+-.|.-+
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~i~~~G~Ip~----Lv~lL~~~-~~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVKA----LMECALEV-KKESTLKSVLSALWNL 198 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHTTHHHH----HHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhcc-CCHHHHHHHHHCCCHHH----HHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 457 89999999999999999999999888542 11111111 11223333 33433222 3556788899999999
Q ss_pred cc-CHHHHHHHhhCHHHHHHHHHHhhcCCC----CcchhhhHHHHhcc
Q psy14464 91 TL-DAEVKEALIEDKPALAALVDVASSGKP----ACTYGVVTTLVNLC 133 (175)
Q Consensus 91 SL-~p~VKE~L~~D~~~Lk~L~~llk~~d~----s~~YG~lsIl~NLT 133 (175)
|. .++.|..++.+...+..|++++...+. .+..-.+.+|.||+
T Consensus 199 s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs 246 (354)
T 3nmw_A 199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246 (354)
T ss_dssp HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHH
T ss_pred HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHH
Confidence 98 889999999888999999999986533 36777788899998
No 35
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=92.88 E-value=0.18 Score=44.00 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=82.9
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCC-CCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccC
Q psy14464 15 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRP-FADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLD 93 (175)
Q Consensus 15 g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~-~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~ 93 (175)
.++-|-.+++++++.++..|+-.|.+|... .+..+.. ...|- ...+-.+|.+ .+.+.+..|+-.|.-++..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~--~~~~~~~i~~~g~----i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~ 74 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGG----ICKLVDLLRS--PNQNVQQAAAGALRNLVFR 74 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTH----HHHHHHHTTS--SCHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCC----HHHHHHHHcC--CCHHHHHHHHHHHHHHhcC
Confidence 345666777889999999999999998742 1111101 11222 3345556643 3667788999999999987
Q ss_pred -HHHHHHHhhCHHHHHHHHHHhh-cCCCCcchhhhHHHHhcccCC
Q psy14464 94 -AEVKEALIEDKPALAALVDVAS-SGKPACTYGVVTTLVNLCNAY 136 (175)
Q Consensus 94 -p~VKE~L~~D~~~Lk~L~~llk-~~d~s~~YG~lsIl~NLTn~Y 136 (175)
++.|..+++. ..+..|+++++ +.+..+.+-++.+|.||+ ..
T Consensus 75 ~~~~k~~i~~~-G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa-~~ 117 (457)
T 1xm9_A 75 STTNKLETRRQ-NGIREAVSLLRRTGNAEIQKQLTGLLWNLS-ST 117 (457)
T ss_dssp CHHHHHHHHHT-TCHHHHHHHHTTCCCHHHHHHHHHHHHHHH-TS
T ss_pred CHHHHHHHHHc-CCHHHHHHHHhhCCCHHHHHHHHHHHHHHh-cC
Confidence 9999999865 78999999998 667788899999999999 65
No 36
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=92.56 E-value=0.11 Score=46.67 Aligned_cols=117 Identities=18% Similarity=0.091 Sum_probs=83.5
Q ss_pred Hhh-HHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCC-CCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhh
Q psy14464 13 KQG-VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPF-ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL 90 (175)
Q Consensus 13 ~~g-~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~-~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYl 90 (175)
..| ++.|-.++.++++.++.-|+-+|.-|... ..+.++... ..|-+ ..+-.+|... .+.+.++.|+-.|.-+
T Consensus 241 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~I~~~GaI----~~LV~lLl~s-~~~~v~~~A~~aL~nL 314 (458)
T 3nmz_A 241 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSV----KALMECALEV-KKESTLKSVLSALWNL 314 (458)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHHHHHHHHTTHH----HHHHHHHTTC-CSHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHHHHHHHHcCCH----HHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 457 89999999999999999999999888542 111111110 11222 3444444332 3567788899999999
Q ss_pred cc-CHHHHHHHhhCHHHHHHHHHHhhcCCCC----cchhhhHHHHhcccCC
Q psy14464 91 TL-DAEVKEALIEDKPALAALVDVASSGKPA----CTYGVVTTLVNLCNAY 136 (175)
Q Consensus 91 SL-~p~VKE~L~~D~~~Lk~L~~llk~~d~s----~~YG~lsIl~NLTn~Y 136 (175)
|. .++.|..++.+...+..|++++...+.+ +..-.+.+|.||+ .|
T Consensus 315 s~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs-~~ 364 (458)
T 3nmz_A 315 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS-SL 364 (458)
T ss_dssp HHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHH-HH
T ss_pred ccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHH-hc
Confidence 98 8899999998899999999999875433 6777788999998 53
No 37
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=92.29 E-value=0.044 Score=39.49 Aligned_cols=89 Identities=20% Similarity=0.189 Sum_probs=64.2
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccCH
Q psy14464 15 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDA 94 (175)
Q Consensus 15 g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~p 94 (175)
..+.|..++++.+..+|..|+-+|++++.. . ...+.++|.+ .+...|.+|++.|+.+.
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-------------~----~~~L~~~L~d--~~~~vR~~A~~aL~~~~--- 70 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDE-------------A----FEPLLESLSN--EDWRIRGAAAWIIGNFQ--- 70 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSST-------------T----HHHHHHGGGC--SCHHHHHHHHHHHGGGC---
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCch-------------H----HHHHHHHHcC--CCHHHHHHHHHHHHhcC---
Confidence 456777778888888888888887766531 1 2556677754 47789999999999875
Q ss_pred HHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 95 EVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 95 ~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
++..+..|+..+++.+..+.+.++..+.++.
T Consensus 71 --------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 71 --------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG 101 (131)
T ss_dssp --------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred --------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4677888999998888889999999999987
No 38
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=92.05 E-value=0.18 Score=46.82 Aligned_cols=117 Identities=18% Similarity=0.143 Sum_probs=83.7
Q ss_pred HHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCC-CCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhh
Q psy14464 12 IKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRP-FADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL 90 (175)
Q Consensus 12 ~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~-~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYl 90 (175)
-..|++.|-.++++.++.++..|+-+|..|..... +.++.. -..|-+.-|++.++. ..+.+.++.|+-.|..|
T Consensus 88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~-~~nk~~I~~~GaIp~LV~LL~s-----~~~~~~~e~aa~aL~nL 161 (584)
T 3l6x_A 88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD-QDNKIAIKNCDGVPALVRLLRK-----ARDMDLTEVITGTLWNL 161 (584)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC-HHHHHHHHHTTHHHHHHHHHHH-----CCSHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC-HHHHHHHHHcCCHHHHHHHHcC-----CCCHHHHHHHHHHHHHH
Confidence 34577999999999999999999999999976211 111111 122445555554442 23556788999999999
Q ss_pred ccCHHHHHHHhhCHHHHHHHHHHhhc------------------CCCCcchhhhHHHHhcccCCC
Q psy14464 91 TLDAEVKEALIEDKPALAALVDVASS------------------GKPACTYGVVTTLVNLCNAYD 137 (175)
Q Consensus 91 SL~p~VKE~L~~D~~~Lk~L~~llk~------------------~d~s~~YG~lsIl~NLTn~Y~ 137 (175)
|..++.|..++. ..+..|++++-. .+..+.+-...+|.||+ +..
T Consensus 162 S~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs-~~~ 223 (584)
T 3l6x_A 162 SSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVS-SER 223 (584)
T ss_dssp TTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHT-SSC
T ss_pred hCCchhhHHHHh--ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHh-cCC
Confidence 999999999994 479999997720 13467788899999998 544
No 39
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=91.71 E-value=0.045 Score=48.34 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=80.8
Q ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc-
Q psy14464 14 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL- 92 (175)
Q Consensus 14 ~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL- 92 (175)
.+++.|..++++.++.+|.-|+-+|+-|.+... +. ..... ...+...+..+|.+. +.+.++.|+-.|+-++.
T Consensus 316 g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~-~~-~~~v~---~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 316 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ-DQ-IQQVV---NHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp TGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCH-HH-HHHHH---HTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcH-HH-HHHHH---hcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcc
Confidence 345778888889999999999999999976311 00 00000 112445566677553 66788899998888876
Q ss_pred -CHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 93 -DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 93 -~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
+++-...|++ ...++.|++++.+.|..++..++..|.|+.
T Consensus 389 ~~~~~~~~L~~-~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 389 GTVEQIVYLVH-CGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp CCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-CCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5666666664 468899999999999999999999999987
No 40
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=91.64 E-value=0.13 Score=42.35 Aligned_cols=115 Identities=19% Similarity=0.168 Sum_probs=83.8
Q ss_pred HhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCC-CCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhc
Q psy14464 13 KQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRP-FADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT 91 (175)
Q Consensus 13 ~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~-~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlS 91 (175)
..|++.|=.+++++++.+|..|+-+|.-|... ++.++.. -..|.+.-|.+.++. +.+.+.++.|+--|-.||
T Consensus 51 ~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~--~~~nk~~I~~~GaI~~Lv~lL~~-----~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 51 LRGILKLLQLLKVQNEDVQRAVCGALRNLVFE--DNDNKLEVAELNGVPRLLQVLKQ-----TRDLETKKQITGLLWNLS 123 (233)
T ss_dssp TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--CHHHHHHHHHcCCHHHHHHHHcc-----CCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999998652 1111111 123445555555442 236678899999999999
Q ss_pred cCHHHHHHHhhCHHHHHHHHHHhh---c-------------CCCCcchhhhHHHHhcccCCC
Q psy14464 92 LDAEVKEALIEDKPALAALVDVAS---S-------------GKPACTYGVVTTLVNLCNAYD 137 (175)
Q Consensus 92 L~p~VKE~L~~D~~~Lk~L~~llk---~-------------~d~s~~YG~lsIl~NLTn~Y~ 137 (175)
..++.|..+++ ..+..|++++- + .+..+.|-..-++.||+ +-.
T Consensus 124 ~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLs-s~~ 182 (233)
T 3tt9_A 124 SNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMS-SAG 182 (233)
T ss_dssp TSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHT-TSC
T ss_pred cChhhHHHHHh--ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHh-cCC
Confidence 99999999986 36888888652 1 13467788999999999 544
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=91.56 E-value=0.28 Score=41.25 Aligned_cols=115 Identities=19% Similarity=0.152 Sum_probs=83.1
Q ss_pred HhhHHHHHHHHhc-CCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhc
Q psy14464 13 KQGVDILKRLYMS-KNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT 91 (175)
Q Consensus 13 ~~g~~~Lk~l~~s-~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlS 91 (175)
..|++.|=.++++ .+..++.-|+-+|+-+-.. .......+.+ ......+..+|.+ .+...+++|+-.|+|++
T Consensus 123 ~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~--~~~~~~~~~~---~ggi~~L~~lL~~--~d~~v~~~A~~aLs~L~ 195 (296)
T 1xqr_A 123 LGALRKLLRLLDRDACDTVRVKALFAISCLVRE--QEAGLLQFLR---LDGFSVLMRAMQQ--QVQKLKVKSAFLLQNLL 195 (296)
T ss_dssp TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHH---TTHHHHHHHHHHS--SCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC--CcHHHHHHHH---CCCHHHHHHHHcC--CCHHHHHHHHHHHHHHH
Confidence 3577888888875 4778999898898887542 1100111111 1233455566654 37788999999999986
Q ss_pred c-CHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcccCC
Q psy14464 92 L-DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAY 136 (175)
Q Consensus 92 L-~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn~Y 136 (175)
- +++.++.+++. .+++.|+.++...+..+..-++.+|.||. +.
T Consensus 196 ~~~~~~~~~vv~~-g~i~~Lv~LL~~~d~~v~~~al~aL~~l~-~~ 239 (296)
T 1xqr_A 196 VGHPEHKGTLCSM-GMVQQLVALVRTEHSPFHEHVLGALCSLV-TD 239 (296)
T ss_dssp HHCGGGHHHHHHT-THHHHHHHHHTSCCSTHHHHHHHHHHHHH-TT
T ss_pred hCChHHHHHHHHc-CCHHHHHHHHcCCChhHHHHHHHHHHHHH-hC
Confidence 5 58888888764 78999999999989999999999999998 54
No 42
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=90.91 E-value=2.4 Score=34.62 Aligned_cols=110 Identities=18% Similarity=0.097 Sum_probs=77.8
Q ss_pred HhhHHHHHHHHh-cCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcC------------------C
Q psy14464 13 KQGVDILKRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVN------------------P 73 (175)
Q Consensus 13 ~~g~~~Lk~l~~-s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~------------------~ 73 (175)
..|++.|=+++. +++..++.-|+-+|.-|..... .+ ..+.+....-|++ .
T Consensus 93 ~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~---~k--------~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 93 LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK---LK--------NLMITEALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG---GH--------HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh---hH--------HHHHhccHHHHHHHHhccccCCcccccccccc
Confidence 346788888887 6788999999888888876421 11 1222222333322 1
Q ss_pred CCCchhhhHHHhhhhhhcc-CHHHHHHHhhCHHHHHHHHHHhhcC------CCCcchhhhHHHHhcc
Q psy14464 74 ARDPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASSG------KPACTYGVVTTLVNLC 133 (175)
Q Consensus 74 ~~~~~~~~~aiEGLAYlSL-~p~VKE~L~~D~~~Lk~L~~llk~~------d~s~~YG~lsIl~NLT 133 (175)
..+.+.+..|.--|..+|- +++.|..+++-+..+..|+.+++.. +...+=-.+.++.||+
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 1255677899999999986 8999999999888999999999752 3334446688999998
No 43
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=90.45 E-value=1.7 Score=37.12 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=100.4
Q ss_pred HHHHHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhh
Q psy14464 9 TSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLA 88 (175)
Q Consensus 9 ~~i~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLA 88 (175)
+.++.+.+|-+=.+.+++|++|.+.|+=+|--|-... +..+.+-.++++.+...+.+ +++-.+..|+|+|-
T Consensus 70 ~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v-------pL~~~~y~Kl~~aL~dlik~--~~~il~~eaae~Lg 140 (265)
T 3b2a_A 70 MMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV-------PMGSKTFLKAAKTLVSLLES--PDDMMRIETIDVLS 140 (265)
T ss_dssp HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC-------CBCHHHHHHHHHHHHHHTTS--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHHHhcC--CCchHHHHHHHHhC
Confidence 3456666666666778999999999998887766431 44566788999999999973 46567889999998
Q ss_pred hhccCHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcccCCCCC----------------CcchHHHHHHhhh
Q psy14464 89 YLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQ----------------EIIPEMIELAKFA 152 (175)
Q Consensus 89 YlSL~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn~Y~~~----------------e~~~~l~~L~~ya 152 (175)
=+..-. -.+...-.+++++++-|.-+.=.+++-|.|+. +|..+ ..++.+.+.+=++
T Consensus 141 klkv~~-------~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia-~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~ 212 (265)
T 3b2a_A 141 KLQPLE-------DSKLVRTYINELVVSPDLYTKVAGFCLFLNML-NSSADSGHLTLILDEIPSLLQNDNEFIVELALDV 212 (265)
T ss_dssp HCCBSC-------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG-GGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHH
T ss_pred cCCccc-------chHHHHHHHHHHHhCCChhHHHHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 763211 13444455677776667777777788888887 65531 1355555555443
Q ss_pred -----cCCCCCCCCCCChHHHHHHhhh
Q psy14464 153 -----KHHIPEDHELDDPDFVTKRLLV 174 (175)
Q Consensus 153 -----~~~~pe~~pld~d~~V~~R~~~ 174 (175)
+.+++ +.-+|+=..|..+++.
T Consensus 213 Le~ils~pi~-~~~~~~~~~~~~~v~~ 238 (265)
T 3b2a_A 213 LEKALSFPLL-ENVKIELLKISRIVDG 238 (265)
T ss_dssp HHHHTTSCCC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHcCccc-HhHHHHHHHHHHHHHH
Confidence 56666 5667776777777654
No 44
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=89.86 E-value=0.32 Score=45.22 Aligned_cols=114 Identities=20% Similarity=0.149 Sum_probs=79.2
Q ss_pred HHHHHh-cCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccCHHHH
Q psy14464 19 LKRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVK 97 (175)
Q Consensus 19 Lk~l~~-s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~p~VK 97 (175)
|-.+++ +.++.++..|+-+|..|.+..+......+. ....+.-...+.++|..+ +.+.++.|+-.|.|++.++..+
T Consensus 313 Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~-~v~~~~glp~Lv~LL~s~--~~~v~~~A~~aL~nLs~~~~~~ 389 (584)
T 3l6x_A 313 YISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRS-ALRQEKALSAIADLLTNE--HERVVKAASGALRNLAVDARNK 389 (584)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHH-HHTSHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHH-HHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhCChhHH
Confidence 344554 678999999999999996531100000000 001123355677788654 5678899999999999999999
Q ss_pred HHHhhCHHHHHHHHHHhhcCC--------CCcchhhhHHHHhcccCCCC
Q psy14464 98 EALIEDKPALAALVDVASSGK--------PACTYGVVTTLVNLCNAYDK 138 (175)
Q Consensus 98 E~L~~D~~~Lk~L~~llk~~d--------~s~~YG~lsIl~NLTn~Y~~ 138 (175)
+.| +..++..|+.+|...+ ..+..+++.++.||+ +-.+
T Consensus 390 ~~I--~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~-a~~~ 435 (584)
T 3l6x_A 390 ELI--GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVI-AENL 435 (584)
T ss_dssp HHH--HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHH-TTCH
T ss_pred HHH--HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHh-cCCH
Confidence 988 4689999999998652 235788999999998 4444
No 45
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=88.55 E-value=0.57 Score=41.25 Aligned_cols=111 Identities=20% Similarity=0.117 Sum_probs=74.5
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccC-HH
Q psy14464 17 DILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLD-AE 95 (175)
Q Consensus 17 ~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~-p~ 95 (175)
+-+-....|.|...+..|+..+.|+-+..... +.... -.......+-.+|.. +.+.+.+..|+-.|.+++-. ++
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~-~i~~i---i~~G~ip~Lv~lL~~-~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQP-PIDNI---IRAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCC-CHHHH---HHTTHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCc-hHHHH---HHCCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCCHH
Confidence 33444456788889999999999987653221 11000 001234466677744 34566778899999998764 44
Q ss_pred HHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 96 VKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 96 VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
-+..+ -+...+..|+.++.+.+..+..-.+.+|.||+
T Consensus 154 ~~~~v-v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa 190 (529)
T 3tpo_A 154 QTKAV-VDGGAIPAFISLLASPHAHISEQAVWALGNIA 190 (529)
T ss_dssp HHHHH-HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 44444 45568899999999888888888888888887
No 46
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=84.56 E-value=0.58 Score=42.91 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=79.5
Q ss_pred HHHHHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhh
Q psy14464 9 TSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLA 88 (175)
Q Consensus 9 ~~i~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLA 88 (175)
...+.--++-+++=+++.|+-+|.+|+-+||.++... -.+.|...+++.|.+...++..|+.|+-++.
T Consensus 106 ~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e------------~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~ 173 (621)
T 2vgl_A 106 SELIRLINNAIKNDLASRNPTFMGLALHCIANVGSRE------------MAEAFAGEIPKILVAGDTMDSVKQSAALCLL 173 (621)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH------------HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHH------------HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3444445566677777999999999999999997620 2357777788888433456778899999886
Q ss_pred hhc-cCHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 89 YLT-LDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 89 YlS-L~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
-+- ++|+ +..++.++..|.+++.+.|.++.+++++.|..++
T Consensus 174 kl~~~~p~----~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 174 RLYRTSPD----LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HHHHHCGG----GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHhChh----hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 443 3443 4444678888888888778888898888888877
No 47
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=84.32 E-value=1.8 Score=37.11 Aligned_cols=113 Identities=19% Similarity=0.134 Sum_probs=74.0
Q ss_pred hhHHHHHHH-HhcCCchhHHHHHHHHHHhcCCCCCCCCCCCC--CCCCHHHHHHHHHHhhcCCCCCc--hhhhHHHhhhh
Q psy14464 14 QGVDILKRL-YMSKNENIRVRALVGLCKLGSMGGSDASIRPF--ADGSTRKLAEACRRFLVNPARDP--DIRRWAAEGLA 88 (175)
Q Consensus 14 ~g~~~Lk~l-~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~--~~~s~~~La~~~~~~L~~~~~~~--~~~~~aiEGLA 88 (175)
.|++.|=.+ ..+.++.++..|+-+|.-|... .+.++.+. ..|-+. .+-++|...+... +.++.|+=-|.
T Consensus 170 G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~--~~~nk~~i~~~~Gai~----~Lv~lL~~~~~~~~~~v~~~A~~aL~ 243 (354)
T 3nmw_A 170 GSVKALMECALEVKKESTLKSVLSALWNLSAH--CTENKADICAVDGALA----FLVGTLTYRSQTNTLAIIESGGGILR 243 (354)
T ss_dssp THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHSTTHHH----HHHHHTTCCCSSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc--ChhhhHHHHHhcCcHH----HHHHHhccCCCcccHHHHHHHHHHHH
Confidence 457777775 5677888888777777777652 11111111 223333 3344453332111 35666777777
Q ss_pred hhcc----CHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 89 YLTL----DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 89 YlSL----~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
++|. .++.++.+++ ...+..|++++++.+..+.--.+.++.||+
T Consensus 244 nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 244 NVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 7774 9999987765 567999999999877778888899999998
No 48
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=83.54 E-value=1.4 Score=36.88 Aligned_cols=113 Identities=17% Similarity=0.096 Sum_probs=77.5
Q ss_pred HhhHHHHHH-HHhcCCchhHHHHHHHHHHhcCCCCCCCCCCC-CCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhh
Q psy14464 13 KQGVDILKR-LYMSKNENIRVRALVGLCKLGSMGGSDASIRP-FADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL 90 (175)
Q Consensus 13 ~~g~~~Lk~-l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~-~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYl 90 (175)
..|++.|=. ++++.++.+|..|+-+|+.+.... +..+.. ...|-..-|. .+|.++ .+...++.|+-.|+.+
T Consensus 80 ~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n--~~~~~~vv~~g~l~~Ll----~LL~~~-~~~~v~~~A~~ALsnl 152 (296)
T 1xqr_A 80 LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV--AAIQEQVLGLGALRKLL----RLLDRD-ACDTVRVKALFAISCL 152 (296)
T ss_dssp TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHH----HHHHHC-SCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHH----HHHccC-CCHHHHHHHHHHHHHH
Confidence 356676666 888999999999999999997531 100000 1112233333 444322 2456788999999998
Q ss_pred cc-CHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 91 TL-DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 91 SL-~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
+- ++...+.+.. ...+..|+.++++.+..+.--++..|.||+
T Consensus 153 ~~~~~~~~~~~~~-~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~ 195 (296)
T 1xqr_A 153 VREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLL 195 (296)
T ss_dssp HTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 75 5666666665 347899999998877777777888888887
No 49
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=77.22 E-value=1.1 Score=40.16 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=81.2
Q ss_pred HhhHHHHHHHHhcCCch----hHHHHHHHHHHhcCC-CCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhh
Q psy14464 13 KQGVDILKRLYMSKNEN----IRVRALVGLCKLGSM-GGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGL 87 (175)
Q Consensus 13 ~~g~~~Lk~l~~s~~d~----ir~~A~V~L~KL~~~-~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGL 87 (175)
..|++.|-.++.+.++. ++.-|+-+|.-|.+. .+.+..+....+ ......+-.+|.+ .+.+.++.|+--|
T Consensus 329 ~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~---~G~i~~Lv~LL~~--~~~~v~~~A~~aL 403 (458)
T 3nmz_A 329 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE---NNCLQTLLQHLKS--HSLTIVSNACGTL 403 (458)
T ss_dssp TTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---TTHHHHHHHHSSC--SCHHHHHHHHHHH
T ss_pred cCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH---cccHHHHHHHHcC--CChHHHHHHHHHH
Confidence 45778888888866553 777777777777641 011111111100 0123344455544 3556788999999
Q ss_pred hhhcc-CHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcccCCCCC
Q psy14464 88 AYLTL-DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQ 139 (175)
Q Consensus 88 AYlSL-~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn~Y~~~ 139 (175)
+-++. +++.+..+++ ...+..|++++.+.+..+.-..+..|.||+ +..|.
T Consensus 404 ~nLa~~~~~~~~~i~~-~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~-~~~p~ 454 (458)
T 3nmz_A 404 WNLSARNPKDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLM-ANRPA 454 (458)
T ss_dssp HHHHSSCHHHHHHHHH-HTHHHHHHTTTTCSSHHHHHHHHHHHHHHH-TCCSC
T ss_pred HHHHcCCHHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHH-cCCHh
Confidence 98884 7999988764 678999999998888888889999999999 66654
No 50
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=75.81 E-value=11 Score=34.00 Aligned_cols=114 Identities=22% Similarity=0.295 Sum_probs=66.2
Q ss_pred HHHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCC----------------CCCCCC---------CCCCCCHHHHHHH
Q psy14464 11 IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGG----------------SDASIR---------PFADGSTRKLAEA 65 (175)
Q Consensus 11 i~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~----------------~d~~~~---------~~~~~s~~~La~~ 65 (175)
+....++.|..++.+.++++|..|+-+|+++....+ .|.+.+ -..+.+...+.+.
T Consensus 310 l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~e 389 (618)
T 1w63_A 310 LRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKE 389 (618)
T ss_dssp HHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHH
Confidence 444567777777887888888888888888874311 010000 0112335677888
Q ss_pred HHHhhcCCCCCchhhhHHHhhhhhhccC-HHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhc
Q psy14464 66 CRRFLVNPARDPDIRRWAAEGLAYLTLD-AEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNL 132 (175)
Q Consensus 66 ~~~~L~~~~~~~~~~~~aiEGLAYlSL~-p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NL 132 (175)
+..|+.+ .|.+.+..++..++-+..+ +... ...+..|+++++..+..+.+-++..+..+
T Consensus 390 L~~~l~~--~d~e~r~~~v~~I~~la~k~~~~~------~~~v~~ll~lL~~~~~~v~~~~~~~l~~i 449 (618)
T 1w63_A 390 LLYFLDS--CEPEFKADCASGIFLAAEKYAPSK------RWHIDTIMRVLTTAGSYVRDDAVPNLIQL 449 (618)
T ss_dssp HHHHHHH--CCHHHHHHHHHHHHHHHHSSCCCH------HHHHHHHHHHHHHTGGGSCSSHHHHHHHH
T ss_pred HHHHHHh--CCHHHHHHHHHHHHHHHHHhCccH------HHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 8888865 3667888888888877654 1111 22355566666554433444444444444
No 51
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=70.79 E-value=15 Score=33.10 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=54.4
Q ss_pred hHHHHHHHHh--cCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc
Q psy14464 15 GVDILKRLYM--SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL 92 (175)
Q Consensus 15 g~~~Lk~l~~--s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL 92 (175)
.++.|..+++ ..++.+|..++.+++|++...+ .....+...+..+. + +.|.+.|+.|.|-+.-++.
T Consensus 510 ~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~----------~~~~~l~~~L~~~~-~-~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 510 VLDILESVLISNMSTSVTRGYALTAIMKLSTRFT----------CTVNRIKKVVSIYG-S-SIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS----------SCHHHHHHHHHHHT-T-CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc----------chHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHHcC
Confidence 4667777766 5788999999999999998532 12456667777775 3 4578999999999988877
Q ss_pred CHHHHHHH
Q psy14464 93 DAEVKEAL 100 (175)
Q Consensus 93 ~p~VKE~L 100 (175)
+|+++..+
T Consensus 578 ~~~~~~~v 585 (618)
T 1w63_A 578 YDHMRSAL 585 (618)
T ss_dssp TTTHHHHH
T ss_pred cHHHHHHH
Confidence 77665433
No 52
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=69.23 E-value=13 Score=36.87 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=37.5
Q ss_pred CchhhhHHHhhhhhhccCHHHHHHHhhCHHHHHHHHHHh-hcCCCCcchhhhHHHHhcccCCCC
Q psy14464 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVA-SSGKPACTYGVVTTLVNLCNAYDK 138 (175)
Q Consensus 76 ~~~~~~~aiEGLAYlSL~p~VKE~L~~D~~~Lk~L~~ll-k~~d~s~~YG~lsIl~NLTn~Y~~ 138 (175)
+++.|+.||.||+.+...- ++.+.++++.+ ...+..+-||+...+..++ .=.|
T Consensus 591 ~d~VRraAViaLGlI~~g~---------~e~v~rlv~~L~~~~d~~VR~gAalALGli~-aGn~ 644 (963)
T 4ady_A 591 NDDVRRAAVIALGFVLLRD---------YTTVPRIVQLLSKSHNAHVRCGTAFALGIAC-AGKG 644 (963)
T ss_dssp CHHHHHHHHHHHHHHTSSS---------CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHT-SSSC
T ss_pred cHHHHHHHHHHHHhhccCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-cCCC
Confidence 4567888888888876553 23456677655 4468888899999999998 4344
No 53
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=68.58 E-value=21 Score=30.88 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=70.3
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccCHH
Q psy14464 16 VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAE 95 (175)
Q Consensus 16 ~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~p~ 95 (175)
+.-|.+=.++.|+-+|.+|+-.||+++... -.+.+..-+++-|.+. ++..|+.|+=+.+-+- +.
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~------------m~~~l~~~lk~~L~d~--~pyVRk~A~l~~~kL~--~~ 169 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDST------------MLQAIERYMKQAIVDK--VPSVSSSALVSSLHLL--KC 169 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCTT------------THHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHT--TT
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCHH------------HHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHh--cc
Confidence 444555566789999999999999998741 2578888899988654 6677888887665432 33
Q ss_pred HHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 96 VKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 96 VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
..|.. + .|+..+-+++.+.+..++|..+..+..+.
T Consensus 170 ~pe~v-~--~~~~~l~~ll~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 170 SFDVV-K--RWVNEAQEAASSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp CHHHH-H--TTHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred CHHHH-H--HHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 33322 1 36777777776667778888888888887
No 54
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=65.89 E-value=9.4 Score=32.44 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=46.2
Q ss_pred HhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhc
Q psy14464 13 KQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT 91 (175)
Q Consensus 13 ~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlS 91 (175)
..-+++|..+.+..++.+|..|+-+|.++....+.+ ....++...+..++.++ +...|..|+++|..+.
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--------NVKSEIIPMFSNLASDE--QDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--------HHHHTHHHHHHHHHTCS--CHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--------hHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHH
Confidence 344567777777888899999999998887542211 11234566666666432 5567888999988764
No 55
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=65.26 E-value=26 Score=26.93 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=64.7
Q ss_pred HhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhc--cCHHHHHHH
Q psy14464 23 YMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT--LDAEVKEAL 100 (175)
Q Consensus 23 ~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlS--L~p~VKE~L 100 (175)
..+.+-..|.-|+..|.++-...+ +. ..+...++...+++.|.++ .+...+..|+++|.-+. +.+.+..
T Consensus 24 l~s~~w~~R~~a~~~L~~l~~~~~-~~-----~~~~~~~i~~~L~~~l~kd-~~~~V~~~a~~~l~~la~~l~~~~~~-- 94 (242)
T 2qk2_A 24 LEEKKWTLRKESLEVLEKLLTDHP-KL-----ENGEYGALVSALKKVITKD-SNVVLVAMAGKCLALLAKGLAKRFSN-- 94 (242)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCS-SB-----CCCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHGGGGHH--
T ss_pred hccCCHHHHHHHHHHHHHHHccCC-CC-----CCCCHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHhhhHHH--
Confidence 357777888889999988875411 11 1234568899999998422 35667788888887776 2222211
Q ss_pred hhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 101 IEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 101 ~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
.-+.++..|++.+++.+..+...+...+.++.
T Consensus 95 -~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~ 126 (242)
T 2qk2_A 95 -YASACVPSLLEKFKEKKPNVVTALREAIDAIY 126 (242)
T ss_dssp -HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 12567777888777665555566555555555
No 56
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=64.70 E-value=5.3 Score=36.81 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhh-hhccCHH
Q psy14464 17 DILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLA-YLTLDAE 95 (175)
Q Consensus 17 ~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLA-YlSL~p~ 95 (175)
+.|-....+.+..+|..|+.+|.++....+..... .........+...+...+.+ .+...|..|++.|. |+...+.
T Consensus 131 ~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~-~~~~~~~~~il~~l~~~l~~--~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 131 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDS-DVLDRPLNIMIPKFLQFFKH--SSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHH-CSSSSCHHHHHHHHTTTTTC--SSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhch-hhhcchHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcccH
Confidence 34444555667778888888877776432211000 01112244555555555543 35678889999986 3333221
Q ss_pred HHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhccc
Q psy14464 96 VKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCN 134 (175)
Q Consensus 96 VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn 134 (175)
.....-+.+++.|+.++.+.+..+..+++.+|.+|..
T Consensus 208 --~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 208 --ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp --HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 1111224678888887776666677777777777763
No 57
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=57.54 E-value=9.7 Score=35.04 Aligned_cols=112 Identities=12% Similarity=0.040 Sum_probs=67.4
Q ss_pred HHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhc
Q psy14464 12 IKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT 91 (175)
Q Consensus 12 ~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlS 91 (175)
+..-+++|...+.+.+..+|..|+.+|..+....+. .. ..-...+...+.+.|.++ +...|..|+..|..++
T Consensus 357 ~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-----~~-~~~l~~~l~~l~~~l~d~--~~~Vr~~a~~~l~~l~ 428 (852)
T 4fdd_A 357 LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-----GM-IPYLPELIPHLIQCLSDK--KALVRSITCWTLSRYA 428 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-----HH-GGGHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-----HH-HHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 344568888888888899999999999998864211 11 123456677777777433 4566766777776544
Q ss_pred cCHHHHHH--HhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 92 LDAEVKEA--LIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 92 L~p~VKE~--L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
- .+.+. -......+..|++.+.+.+..+...++..|.|++
T Consensus 429 ~--~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 429 H--WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE 470 (852)
T ss_dssp H--HHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred H--HhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1 11110 0112456666666666555555566666666655
No 58
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=57.15 E-value=40 Score=27.46 Aligned_cols=114 Identities=12% Similarity=0.072 Sum_probs=64.5
Q ss_pred HHHHHHHhcC--CchhHHHHHHHHHHhcCCCCCCC-C-----CCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhh
Q psy14464 17 DILKRLYMSK--NENIRVRALVGLCKLGSMGGSDA-S-----IRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLA 88 (175)
Q Consensus 17 ~~Lk~l~~s~--~d~ir~~A~V~L~KL~~~~~~d~-~-----~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLA 88 (175)
..|-.++.+. ++.+|..|++.|-++-....... + .....+.....+-..+-..|.++ +... ..+.+.++
T Consensus 38 ~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~--~~~v-~~~~~~i~ 114 (462)
T 1ibr_B 38 VELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTE--TYRP-SSASQCVA 114 (462)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCC--CSSS-CSHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCC--Cchh-hHHHHHHH
Confidence 3455566543 57899999999987643210000 0 00011111222333344444443 2234 56666666
Q ss_pred hhccCHHHHHHH--hhCHHHHHHHHHHhhcC--CCCcchhhhHHHHhcccCCCC
Q psy14464 89 YLTLDAEVKEAL--IEDKPALAALVDVASSG--KPACTYGVVTTLVNLCNAYDK 138 (175)
Q Consensus 89 YlSL~p~VKE~L--~~D~~~Lk~L~~llk~~--d~s~~YG~lsIl~NLTn~Y~~ 138 (175)
.+.-. .. ..-+.++..|++.+.+. +..+..|++.+|.+++..+.+
T Consensus 115 ~ia~~-----~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~ 163 (462)
T 1ibr_B 115 GIACA-----EIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP 163 (462)
T ss_dssp HHHHH-----HGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG
T ss_pred HHHHH-----hccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCc
Confidence 55321 11 13478899999998876 677889999999999855644
No 59
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=54.00 E-value=23 Score=35.09 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--cCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc
Q psy14464 16 VDILKRLYMSKNENIRVRALVGLCKL--GSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL 92 (175)
Q Consensus 16 ~~~Lk~l~~s~~d~ir~~A~V~L~KL--~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL 92 (175)
++.|+.++...++.++..|+.+|..+ |+. + .+..+.+-.++.+. .+++.|+.++.||+.+.+
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTg-------------n-~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTG-------------K-PEAIHDMFTYSQET-QHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-------------C-HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-------------C-HHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhC
Confidence 35666666655556666776666544 442 1 34444444544443 356788899999996643
No 60
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=50.79 E-value=47 Score=29.49 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=47.2
Q ss_pred HHHHHHHHh---cCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHH-HHHHhhcCCCCCchhhhHHHhhhhhhc
Q psy14464 16 VDILKRLYM---SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAE-ACRRFLVNPARDPDIRRWAAEGLAYLT 91 (175)
Q Consensus 16 ~~~Lk~l~~---s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~-~~~~~L~~~~~~~~~~~~aiEGLAYlS 91 (175)
-+.|..+++ ..+..+|..++.+++|+....+.. ...+.. .+..+. .++.|.+.|+.|+|-+.-++
T Consensus 463 ~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~----------~~~~i~~ll~~~~-~d~~d~evrdRA~~y~~ll~ 531 (591)
T 2vgl_B 463 DELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE----------TQELVQQVLSLAT-QDSDNPDLRDRGYIYWRLLS 531 (591)
T ss_dssp HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST----------THHHHHHHHHHHH-TTCCCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH----------HHHHHHHHHHHhh-hcCCChHHHHHHHHHHHHHC
Confidence 467777775 456789999999999999753211 123333 333333 44567789999999999998
Q ss_pred cCHH
Q psy14464 92 LDAE 95 (175)
Q Consensus 92 L~p~ 95 (175)
.+++
T Consensus 532 ~~~~ 535 (591)
T 2vgl_B 532 TDPV 535 (591)
T ss_dssp TCTT
T ss_pred cCHH
Confidence 8653
No 61
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=46.40 E-value=55 Score=27.60 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhcCCCCCchhhhHHHhhhhhh
Q psy14464 60 RKLAEACRRFLVNPARDPDIRRWAAEGLAYL 90 (175)
Q Consensus 60 ~~La~~~~~~L~~~~~~~~~~~~aiEGLAYl 90 (175)
..+...+..++.+ .+...|..|++.|..+
T Consensus 163 ~~l~~~l~~l~~d--~~~~VR~~a~~~l~~l 191 (588)
T 1b3u_A 163 AELRQYFRNLCSD--DTPMVRRAAASKLGEF 191 (588)
T ss_dssp HHHHHHHHHHHTC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 3445555555533 3667788888888766
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=46.29 E-value=53 Score=29.83 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=29.2
Q ss_pred HHHHhhHHHHHHHHhcCCchhHHHHHHHHHHhcCC
Q psy14464 10 SIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSM 44 (175)
Q Consensus 10 ~i~~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~ 44 (175)
.++...+..|..++.+.+.++|..|+-.|.++...
T Consensus 325 ~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~ 359 (621)
T 2vgl_A 325 NLLVRACNQLGQFLQHRETNLRYLALESMCTLASS 359 (621)
T ss_dssp HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhc
Confidence 34566778888888888899999999999999865
No 63
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=46.28 E-value=46 Score=27.07 Aligned_cols=69 Identities=9% Similarity=0.033 Sum_probs=44.8
Q ss_pred HHHHHHHHhcC--CchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhh
Q psy14464 16 VDILKRLYMSK--NENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAY 89 (175)
Q Consensus 16 ~~~Lk~l~~s~--~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAY 89 (175)
++.|-..+.+. ++.+|..|+.+|.++-..... ..-..-...+...|...|.++..+...|..|++.|..
T Consensus 130 l~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~-----~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~ 200 (462)
T 1ibr_B 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP-----EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200 (462)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG-----GGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCc-----hhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 45555666676 788999999888877642110 0112234568888888886543256678888888864
No 64
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=44.92 E-value=70 Score=30.64 Aligned_cols=107 Identities=13% Similarity=0.123 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhc--cCH
Q psy14464 17 DILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT--LDA 94 (175)
Q Consensus 17 ~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlS--L~p 94 (175)
+.|-+.+.+.++.+|..|+.+|+.+...-+ +.....+...+...|.++ +...|..|..+|+.+. +.+
T Consensus 51 ~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~---------~~~~~~i~~~Ll~~l~d~--~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 51 KMILKLLEDKNGEVQNLAVKCLGPLVSKVK---------EYQVETIVDTLCTNMLSD--KEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTSC---------HHHHHHHHHHHHHHTTCS--SSHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHhCCC
Confidence 334444457888999999999999885311 112234444555555433 4456888899988654 333
Q ss_pred HH---HHHHhhCHHHHHHHHHHhhc-CCCCcchhhhHHHHhccc
Q psy14464 95 EV---KEALIEDKPALAALVDVASS-GKPACTYGVVTTLVNLCN 134 (175)
Q Consensus 95 ~V---KE~L~~D~~~Lk~L~~llk~-~d~s~~YG~lsIl~NLTn 134 (175)
.. +..-..-+.++..|++.+.+ .+..+..|++.+|.+++.
T Consensus 120 ~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 120 ASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 20 00001135678888888874 556677888889888873
No 65
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=41.72 E-value=58 Score=24.87 Aligned_cols=110 Identities=12% Similarity=0.091 Sum_probs=65.2
Q ss_pred hhHHHHHHHHh-cCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc
Q psy14464 14 QGVDILKRLYM-SKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL 92 (175)
Q Consensus 14 ~g~~~Lk~l~~-s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL 92 (175)
.-++.|...+. ..|..++..|+-+|..|....+.+ + +.-...+...+-..+.+ +....|+.|.+.|.=+.-
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~-----~-~~~~~~ilp~ll~~l~d--~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR-----F-SNYASACVPSLLEKFKE--KKPNVVTALREAIDAIYA 127 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG-----G-HHHHHHHHHHHHHGGGC--CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh-----H-HHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHH
Confidence 33567777784 788889889988888877532211 1 11234455555555533 245677777777764432
Q ss_pred CHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcccCCCC
Q psy14464 93 DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDK 138 (175)
Q Consensus 93 ~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn~Y~~ 138 (175)
...+ +.++..|+..++..+..+.-+++.++..+-.++.|
T Consensus 128 ~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 128 STSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp TSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred cCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 2222 24566677777665566667777777774325544
No 66
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=41.49 E-value=80 Score=22.96 Aligned_cols=76 Identities=9% Similarity=0.053 Sum_probs=52.1
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccCHHHHHHHhhCHH---HHHHHHHHhh---cCCCCcchh
Q psy14464 51 IRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKP---ALAALVDVAS---SGKPACTYG 124 (175)
Q Consensus 51 ~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~p~VKE~L~~D~~---~Lk~L~~llk---~~d~s~~YG 124 (175)
.+|..+..-.+.+++|-+-|..+....+...|-.|-|+|=--+|++|.-|+.=+. .+..+++-+. ....++.=|
T Consensus 3 IkQGPkEPFrDyVdRf~kalraeqa~~~vK~wmt~tLlvQNANPdCk~iLkal~g~~~tl~em~~yi~~~~d~gP~~~qg 82 (96)
T 1eoq_A 3 IMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTAPLTDQG 82 (96)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHSCHHHHHHHHHCCSCCCSHHHHHHHHHHHSCCCC-----
T ss_pred cccCCCCcHHHHHHHHHHHHHHhhccHhHhhhhHHHHHHHhcCHHHHHHHHccCCCCCCHHHHHHHHHHHHhhChHHHHH
Confidence 4565667789999999999988777878889999999999999999999876622 2444444443 234455555
Q ss_pred hh
Q psy14464 125 VV 126 (175)
Q Consensus 125 ~l 126 (175)
++
T Consensus 83 ~a 84 (96)
T 1eoq_A 83 IA 84 (96)
T ss_dssp --
T ss_pred HH
Confidence 55
No 67
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=40.30 E-value=81 Score=28.17 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=42.7
Q ss_pred HHHHHHHhcC-CchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhh
Q psy14464 17 DILKRLYMSK-NENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL 90 (175)
Q Consensus 17 ~~Lk~l~~s~-~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYl 90 (175)
+.|-....+. ++.+|..|+.+|..+-..-+.+ .+ .-......+...+...+.++..+.+.|..|++.|..+
T Consensus 137 ~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~--~~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~ 208 (861)
T 2bpt_A 137 KIMVDNTGAEQPENVKRASLLALGYMCESADPQ--SQ-ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADS 208 (861)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTT--SS-TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChh--hh-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 4444444555 7788888888777765431111 00 0122356677777777755433567888999988643
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=37.66 E-value=70 Score=27.18 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=27.0
Q ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhcCCC
Q psy14464 15 GVDILKRLYMSKNENIRVRALVGLCKLGSMG 45 (175)
Q Consensus 15 g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~ 45 (175)
=++|+..+.+|.|..+|..|...|.-+.+..
T Consensus 151 V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 3589999999999999999999999888763
No 69
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=34.29 E-value=1.8e+02 Score=27.51 Aligned_cols=122 Identities=15% Similarity=0.140 Sum_probs=74.9
Q ss_pred HHHHhhHHHHHHHHhcC--Cch-hHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcC------------CC
Q psy14464 10 SIIKQGVDILKRLYMSK--NEN-IRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVN------------PA 74 (175)
Q Consensus 10 ~i~~~g~~~Lk~l~~s~--~d~-ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~------------~~ 74 (175)
.+-+.|++.|=..++.. |+. ++. ++-.|+=+-..++.+..-+. ......+++..+...+.. +.
T Consensus 56 ~Vg~~~l~~li~~L~~d~~D~e~v~~-~LetL~~l~~~~~~~~~~~~-~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~ 133 (651)
T 3grl_A 56 EVGIQAMEHLIHVLQTDRSDSEIIGY-ALDTLYNIISNDEEEEVEEN-STRQSEDLGSQFTEIFIKQQENVTLLLSLLEE 133 (651)
T ss_dssp HHHHHTHHHHHHHHHSCTTCHHHHHH-HHHHHHHHHCCC---------------CHHHHHHHHHHHSTHHHHHHHHHTTC
T ss_pred HhhhhhHHHHHHHHhcccccHHHHHH-HHHHHHHHhCCCCccccccc-ccccchHHHHHHHHHHHcCCccHHHHHHHhcC
Confidence 46678888888888743 322 333 44455444332221110000 011123344444332211 23
Q ss_pred CCchhhhHHHhhhhhhc-cCHH-HHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 75 RDPDIRRWAAEGLAYLT-LDAE-VKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 75 ~~~~~~~~aiEGLAYlS-L~p~-VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
.|...|-+++-=|..+. -+|+ +.+.+...|.-+..|++++.+..-.+.--.+..|.+||
T Consensus 134 ~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt 194 (651)
T 3grl_A 134 FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALT 194 (651)
T ss_dssp CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 46667778888887765 5777 99999999999999999999887788888899999999
No 70
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=34.01 E-value=1.2e+02 Score=27.13 Aligned_cols=111 Identities=9% Similarity=0.092 Sum_probs=64.4
Q ss_pred HhhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhcc
Q psy14464 13 KQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTL 92 (175)
Q Consensus 13 ~~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL 92 (175)
..-++.|-..++..++.+|..|+-+|..+...-+.+. ........+...+-+.|.+ +...+..|+.+|..+.-
T Consensus 410 ~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 410 HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI----DPQQHLPGVVQACLIGLQD---HPKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS----CTTTTHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc----CCHHHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHH
Confidence 3444555556667778888888878877775422111 0122356677777777733 25667777777765531
Q ss_pred C------HHHHHHHhhCHHHHHHHHHHhhcCC--CCcchhhhHHHHhcc
Q psy14464 93 D------AEVKEALIEDKPALAALVDVASSGK--PACTYGVVTTLVNLC 133 (175)
Q Consensus 93 ~------p~VKE~L~~D~~~Lk~L~~llk~~d--~s~~YG~lsIl~NLT 133 (175)
. ..+...+ +..+..|+.++++.+ ..+...++..+.++.
T Consensus 483 ~~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 483 QLAEATPSPIYNFY---PALVDGLIGAANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp HHSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred hcccccchhhHHHH---HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHH
Confidence 1 1111111 456778888887543 455666666666666
No 71
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=33.77 E-value=30 Score=32.80 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=54.0
Q ss_pred HHHHhhcCCCCCchhhhHHHhhhhh-hccCHH-----------------HHHHHhhCHHHHHHHHHHhhcCCCCcchhhh
Q psy14464 65 ACRRFLVNPARDPDIRRWAAEGLAY-LTLDAE-----------------VKEALIEDKPALAALVDVASSGKPACTYGVV 126 (175)
Q Consensus 65 ~~~~~L~~~~~~~~~~~~aiEGLAY-lSL~p~-----------------VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~l 126 (175)
.+...|.++..|.+..+.+.|-|.- ++-+.+ .-|.+..+++.+..|++++++.+--+.|..+
T Consensus 64 ~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~al 143 (651)
T 3grl_A 64 HLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGV 143 (651)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHH
Confidence 3445566677788888899999854 343332 2356778999999999999988878888888
Q ss_pred HHHHhcccCCCCC
Q psy14464 127 TTLVNLCNAYDKQ 139 (175)
Q Consensus 127 sIl~NLTn~Y~~~ 139 (175)
-.|..|+ .-+|+
T Consensus 144 qlL~~L~-~~r~~ 155 (651)
T 3grl_A 144 KLLTSLL-KQLGP 155 (651)
T ss_dssp HHHHHHH-HHSHH
T ss_pred HHHHHHH-hcCcH
Confidence 8888888 55554
No 72
>1qrj_B HTLV-I capsid protein; retrovirus, two-domain protein, alpha helical protein, heteronuclear spectroscopy; NMR {Human t-cell lymphotrophic virus TYPE1} SCOP: a.28.3.1 a.73.1.1
Probab=33.14 E-value=1.9e+02 Score=23.18 Aligned_cols=70 Identities=20% Similarity=0.072 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCC--CCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccCHHHHHHHhh
Q psy14464 33 RALVGLCKLGSMGG--SDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIE 102 (175)
Q Consensus 33 ~A~V~L~KL~~~~~--~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~p~VKE~L~~ 102 (175)
.+..+|-|+-.... +=...+|-....-.+.+++|-+-+..+..+.+...|-.|-|+|--.+|++|..|..
T Consensus 101 w~i~a~~ki~~~~~~~s~~~IkQGpkEPf~dfVdR~~k~l~ae~~~~~vK~~~~~tL~~qNANpdCk~ilk~ 172 (199)
T 1qrj_B 101 LWLAAFAALPGSAKDPSWASILQGLEEPYHAFVERLNIALDNGLPEGTPKDPILRSLAYSNANKECQKLLQA 172 (199)
T ss_dssp HHHHHHHTSSSSCCCCSGGGCCBCTTSCHHHHHHHHHHHHHTTCCTTSCCHHHHHHHHTTTBCHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCcchhhcCCCCcHHHHHHHHHHHHHhhcCchhhhhHHHHHHHHHhcCchhHHHHHh
Confidence 35566777764311 11256677777888999999998887776777788999999999999999987754
No 73
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=29.13 E-value=45 Score=29.93 Aligned_cols=70 Identities=9% Similarity=0.065 Sum_probs=44.5
Q ss_pred HHHHHHHHhcC--CchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhh
Q psy14464 16 VDILKRLYMSK--NENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYL 90 (175)
Q Consensus 16 ~~~Lk~l~~s~--~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYl 90 (175)
++.|-....+. ++.+|..|+-+|..+-..-+.+ .+ ..-...+...+...+.++..+.+.|..|++.|.-+
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~----~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~ 201 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE----QL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH----HH-GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh----hH-HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 35556666666 7888988888888776431100 01 12345677777777755433456788999988743
No 74
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=29.11 E-value=88 Score=28.61 Aligned_cols=91 Identities=20% Similarity=0.153 Sum_probs=58.4
Q ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHH-HHHHhhcCCCCCchhhhHHHhhhhhhcc
Q psy14464 14 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAE-ACRRFLVNPARDPDIRRWAAEGLAYLTL 92 (175)
Q Consensus 14 ~g~~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~-~~~~~L~~~~~~~~~~~~aiEGLAYlSL 92 (175)
.-.++|+. ++|.+...|.-|+.+|+-|-.. .+.++.- -.++++. .++.+|..+ +.+.|..|+..|.-|+.
T Consensus 35 ~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~----~~~~~l~--~~~~~v~~ll~~lL~D~--~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 35 KILPVLKD-LKSPDAKSRTTAAGAIANIVQD----AKCRKLL--LREQVVHIVLTETLTDN--NIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp TTHHHHHH-HSSSCCSHHHHHHHHHHHHTTS----HHHHHHH--HHTTHHHHHHHTTTTCS--CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH-cCCCCHHHHHHHHHHHHHHHcC----cHHHHHH--HHcCCHHHHHHHHcCCC--CHHHHHHHHHHHHHHHh
Confidence 34588876 6889999999999999999742 1101000 0112333 345556443 66789999999998887
Q ss_pred C--HHHHHHHhhCHHHHHHHHHHh
Q psy14464 93 D--AEVKEALIEDKPALAALVDVA 114 (175)
Q Consensus 93 ~--p~VKE~L~~D~~~Lk~L~~ll 114 (175)
+ ++|...+..+. .+..|..++
T Consensus 106 ~~g~d~~~~l~~~~-il~~L~~~l 128 (684)
T 4gmo_A 106 EEEADFCVHLYRLD-VLTAIEHAA 128 (684)
T ss_dssp HSCHHHHHHHHHTT-HHHHHHHHH
T ss_pred hcCchHHHHHHHcC-hHHHHHHHH
Confidence 5 78888877654 344444444
No 75
>3ds4_A HIV-1 capsid protein; HIV, mutant, polyprotein, complex(viral protein/peptide), mainly alpha; 1.12A {Human immunodeficiency virus 1} PDB: 3dph_A 1a43_A 2xt1_A 2buo_A 3lry_A 2kod_A 3ds1_A 3dtj_A 3ds0_A 3ds5_A 3ds2_A 3ds3_A 2jo0_A 2jyg_A 2xxm_A 2xv6_A 2ont_A 1aum_A 1a8o_A 4arg_B ...
Probab=28.17 E-value=1.4e+02 Score=20.67 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=48.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccCHHHHHHHhh--CHHHHHHHHHHhhcC
Q psy14464 51 IRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIE--DKPALAALVDVASSG 117 (175)
Q Consensus 51 ~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~p~VKE~L~~--D~~~Lk~L~~llk~~ 117 (175)
.+|-....-.+.+.+|-+-+..+..+.+...|-.|-|+|=--+|++|.-|.. ....|+.++.-+...
T Consensus 8 i~QGpkEpf~dfv~rl~k~l~~e~~~~~vK~~m~~tL~~qNAnp~Ck~il~~l~~~~~lee~~~aC~~v 76 (86)
T 3ds4_A 8 IRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATSEEMMTACQGV 76 (86)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTSCHHHHHHHHHHCTTCCHHHHHHHHTTS
T ss_pred cccCCCCcHHHHHHHHHHHHHHhccchhHHHHHHHhHHHHhccHHHHHHHHccCCCCCHHHHHHHcccc
Confidence 3455556678899999888876666767788999999999999999987763 234566666555543
No 76
>3tir_A ROUS sarcoma virus capsid protein P27; viral capsid protein, viral protein; 4.10A {Rous sarcoma virus} PDB: 2x8q_A
Probab=27.10 E-value=2.3e+02 Score=23.25 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCCC--CC-CCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccCHHHHHHHhh
Q psy14464 33 RALVGLCKLGSMGG--SD-ASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIE 102 (175)
Q Consensus 33 ~A~V~L~KL~~~~~--~d-~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~p~VKE~L~~ 102 (175)
.|.-+|.|+...+. .. ...+|.....-.+.+.+|-+-+.....+.....|-++-|+|=--+|++|--|..
T Consensus 135 ~ai~aw~~l~~~~~~~~~~~~I~QGp~Epf~dfv~rl~~a~~~~~~~~~~~~~~~~~l~~qNAN~~ck~il~~ 207 (226)
T 3tir_A 135 SALQAFREVARLAEPAGPWADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRT 207 (226)
T ss_dssp HHHHHHHHHHHHC----CGGGCCCCTTCCHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSCHHHHHHHHT
T ss_pred HHHHHHHhccccCCCCcchhHhhcCCCCcHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 34557777743211 11 245577777888999999988877666767889999999999999999987764
No 77
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=26.60 E-value=1.6e+02 Score=25.24 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhcCCCCcchhhhHHHHhcccCCCCC
Q psy14464 105 PALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQ 139 (175)
Q Consensus 105 ~~Lk~L~~llk~~d~s~~YG~lsIl~NLTn~Y~~~ 139 (175)
.++..|...++..+.+++|..+-+|.+++ .+++.
T Consensus 250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~-~~~~~ 283 (355)
T 3tjz_B 250 PLFDFIESCLRNKHEMVVYEAASAIVNLP-GCSAK 283 (355)
T ss_dssp -------CCCCCSSHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhcc-CCCHH
Confidence 44555555566678899999999999999 45543
No 78
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=25.88 E-value=39 Score=20.22 Aligned_cols=17 Identities=18% Similarity=0.688 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCCchhHH
Q psy14464 16 VDILKRLYMSKNENIRV 32 (175)
Q Consensus 16 ~~~Lk~l~~s~~d~ir~ 32 (175)
..+++++|.+++|..|=
T Consensus 9 ~~~fk~iY~~gddd~kr 25 (35)
T 2jtt_C 9 MNVLKKIYEDGDDDMKR 25 (35)
T ss_dssp HHHHHHHHTTCCSSHHH
T ss_pred HHHHHHHHhcCCHHHHH
Confidence 47899999999987763
No 79
>1baj_A GAG polyprotein; capsid, HIV-1 assembly protein, viral protein; 2.60A {Human immunodeficiency virus 1} SCOP: a.28.3.1
Probab=24.72 E-value=1.6e+02 Score=20.86 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=42.1
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccCHHHHHHHhh
Q psy14464 51 IRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIE 102 (175)
Q Consensus 51 ~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~p~VKE~L~~ 102 (175)
.+|-....-.+.+++|-+-+..+..+.+...|-.|-|+|=-..|+.|.-|..
T Consensus 9 ikQGpkepf~d~v~R~~k~l~~e~~~~~vK~~~~~tL~~qnanp~Ck~~lk~ 60 (101)
T 1baj_A 9 IRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKA 60 (101)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHTSCHHHHHHHHH
T ss_pred hhcCCCCcHHHHHHHHHHHHHHhhccHHHHHHHhhhHHHHhhchhhhHHHHc
Confidence 4455566778999998888877666777788999999999999999986653
No 80
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=24.65 E-value=2e+02 Score=21.72 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=31.7
Q ss_pred hhhhHHHHHHhhHHHHHHHHhcCCchh---HHHHHHHHHHhcCC
Q psy14464 4 ISHSITSIIKQGVDILKRLYMSKNENI---RVRALVGLCKLGSM 44 (175)
Q Consensus 4 ~~~~~~~i~~~g~~~Lk~l~~s~~d~i---r~~A~V~L~KL~~~ 44 (175)
|+++-..=+..|+.+|..+|+.+.+.. -..-+||-.|+|..
T Consensus 51 v~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY 94 (134)
T 3o48_A 51 IKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY 94 (134)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH
T ss_pred HcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhH
Confidence 556666778899999999998655333 34788999999976
No 81
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=22.59 E-value=66 Score=29.43 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=46.9
Q ss_pred CCchhhhHHHhhhhhhccCHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 75 RDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 75 ~~~~~~~~aiEGLAYlSL~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
.+.+.|.||+-.|+-+.-+|+.+..+.........|..++...+..+.=..+..|-||+
T Consensus 46 ~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 46 PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 46778999999999999999999888776666555666677667777777777788887
No 82
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=21.84 E-value=2.2e+02 Score=27.19 Aligned_cols=109 Identities=18% Similarity=0.127 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhc-----
Q psy14464 17 DILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT----- 91 (175)
Q Consensus 17 ~~Lk~l~~s~~d~ir~~A~V~L~KL~~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlS----- 91 (175)
+.|-..+.+.++.+|..|+-+|..+...-+.+............+|...+...+.+ +.+...+..|++.|..+.
T Consensus 89 ~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~~~~~~ 167 (1230)
T 1u6g_C 89 DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQLEALDIMADMLSRQGG 167 (1230)
T ss_dssp HHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhHh
Confidence 34444445677788988888998887542211000001111245666666666642 345677888999888764
Q ss_pred -cCHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 92 -LDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 92 -L~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
+.|.. +.++..|+..+...+..+.-..+..+..+.
T Consensus 168 ~l~~~~-------~~ll~~l~~~L~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 168 LLVNFH-------PSILTCLLPQLTSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp SCTTTH-------HHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHH-------HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 22211 445555555554433344444444444444
No 83
>1eia_A EIAV capsid protein P26; viral capsid, HIV, lentivirus, viral protein; 2.70A {Equine infectious anemia virus} SCOP: a.28.3.1 a.73.1.1 PDB: 2eia_A
Probab=21.67 E-value=2.7e+02 Score=22.41 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=45.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHHhhhhhhccCHHHHHHHhh
Q psy14464 49 ASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIE 102 (175)
Q Consensus 49 ~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~aiEGLAYlSL~p~VKE~L~~ 102 (175)
...+|-....-.+.+++|-+-+..+..+.+...|-.+-|+|--.+|++|-.|..
T Consensus 136 ~~IkQGpKEPf~dfVdR~~k~l~~e~~~~~vK~~mt~tL~~qNANpdCk~ilk~ 189 (207)
T 1eia_A 136 QNIRQGAKEPYPEFVDRLLSQIKSEGHPQEISKFLTDTLTIQNANEECRNAMRH 189 (207)
T ss_dssp GGCCCCTTCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHTSCHHHHHHTTT
T ss_pred cccccCCCCcHHHHHHHHHHHHHhhccchhhhHHhhhhHHHHhcCHHHHHHHHh
Confidence 356677777788999999998887777777888999999999999999997764
No 84
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=21.65 E-value=2.7e+02 Score=24.81 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=24.8
Q ss_pred hccCHHHHHHHhhCHHHHHHHHHHhhcCCCCcchhhhHHHHhcc
Q psy14464 90 LTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133 (175)
Q Consensus 90 lSL~p~VKE~L~~D~~~Lk~L~~llk~~d~s~~YG~lsIl~NLT 133 (175)
..+++++|+.++. .|++.+.+.+..+ -+++.+++.+.
T Consensus 81 ~~l~~~~~~~ik~------~ll~~l~~~~~~~-~~~~~~l~~i~ 117 (876)
T 1qgr_A 81 LAIDANARREVKN------YVLHTLGTETYRP-SSASQCVAGIA 117 (876)
T ss_dssp HTSCHHHHHHHHH------HHHHHTTTCCSSS-CHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH------HHHHHhCCCcHHH-HHHHHHHHHHH
Confidence 4577777776643 3666676666566 77777777776
No 85
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.34 E-value=1.8e+02 Score=19.43 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHhhcCCCCCchhhhHHH
Q psy14464 43 SMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAA 84 (175)
Q Consensus 43 ~~~~~d~~~~~~~~~s~~~La~~~~~~L~~~~~~~~~~~~ai 84 (175)
++|++.-+.++..........+.++.|+= ..|...++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~L~~MFP--~lD~~vI~~vL 41 (67)
T 2dhy_A 2 SSGSSGRPARQVRRLEFNQAMDDFKTMFP--NMDYDIIECVL 41 (67)
T ss_dssp CCSCCCCCCCCCCCCCSHHHHHHHHHHCS--SSCHHHHHHHH
T ss_pred CCCCCCCcchhccCCCHHHHHHHHHHHCC--CCCHHHHHHHH
Confidence 34444334556666677888888888873 34555554443
Done!