RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14464
(175 letters)
>gnl|CDD|221172 pfam11701, UNC45-central, Myosin-binding striated muscle assembly
central. The UNC-45 or small muscle protein 1 of
C.elegans is expressed in two forms from different
genomic positions in mammals, as a general tissue
protein UNC-45a and a specific form Unc-45b expressed
only in striated and skeletal muscle. All members carry
up to three amino-terminal tetratricopeptide repeat
(TPR) domains towards their N-terminal, a UCS domain at
the C-terminal that contains a number of Arm repeats
pfam00514 and this central region of approximately 400
residues. Both the general form and the muscle form of
UNC-45 function in myotube formation through cell
fusion. Myofibril formation requires both GC and SM
UNC-45, consistent with the fact that the cytoskeleton
is necessary for the development and maintenance of
organised myofibrils. The S. pombe Rng3p, is crucial for
cell shape, normal actin cytoskeleton, and contractile
ring assembly, and is essential for assembly of the
myosin II-containing progenitors of the contractile
ring. Widespread defects in the cytoskeleton are found
in null mutants of all three fungal proteins. Mammalian
Unc45 is found to act as a specific chaperone during the
folding of myosin and the assembly of striated muscle by
forming a stable complex with the general chaperone
Hsp90. The exact function of this central region is not
known.
Length = 155
Score = 41.1 bits (97), Expect = 5e-05
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 11 IIKQGVDILKRLYM-SKNENIRVRALVGLCKL 41
I K G++ LK LY SK++ I+V A V LCKL
Sbjct: 124 ISKNGLEWLKDLYKNSKDDEIKVLAAVVLCKL 155
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 28.1 bits (63), Expect = 0.77
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 19/84 (22%)
Query: 19 LKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPD 78
L+ L + +R A L +LG + A L +P DP+
Sbjct: 5 LEALLSDPDPEVRAAAARALGELGD----------------PEALPALLELLKDP--DPE 46
Query: 79 IRRWAAEGLAYLTLDAEVKEALIE 102
+RR AAE L L D E AL+E
Sbjct: 47 VRRAAAEALGKLG-DPEALPALLE 69
>gnl|CDD|173083 PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Provisional.
Length = 326
Score = 29.4 bits (66), Expect = 0.96
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 6 HSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSM 44
++ ++I +G++ +K LY +KN +I + L+G LG +
Sbjct: 208 NAHAAVITKGMNEIKTLYSAKNGSIDLNTLIGPSCLGDL 246
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
40 amino acid long tandemly repeated sequence motif
first identified in the Drosophila segment polarity gene
armadillo; these repeats were also found in the
mammalian armadillo homolog beta-catenin, the junctional
plaque protein plakoglobin, the adenomatous polyposis
coli (APC) tumor suppressor protein, and a number of
other proteins. ARM has been implicated in mediating
protein-protein interactions, but no common features
among the target proteins recognized by the ARM repeats
have been identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by this
alignment model.
Length = 120
Score = 28.4 bits (64), Expect = 0.97
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 11/121 (9%)
Query: 15 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVN-- 72
G+ L L S +EN++ A L L G++ +I+ + LV
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNL--SAGNNDNIQAVVEAG-------GLPALVQLL 58
Query: 73 PARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNL 132
+ D ++ + A L L E + ++ + + LV++ S L NL
Sbjct: 59 KSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118
Query: 133 C 133
Sbjct: 119 A 119
>gnl|CDD|219630 pfam07901, DUF1672, Protein of unknown function (DUF1672). This
family is composed of hypothetical bacterial proteins of
unknown function.
Length = 277
Score = 28.3 bits (63), Expect = 2.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 125 VVTTLVNLCNAYDKQEIIPEMIELAK--FAKHHIPEDHE----LDDPDFVTKR 171
VVTTL + + + K + ++I+L++ K +IPE+ L TKR
Sbjct: 208 VVTTLFSTKDNFTKDNTVDDVIDLSEELKKKKNIPENTTITLQLSKNKINTKR 260
>gnl|CDD|234952 PRK01402, hslO, Hsp33-like chaperonin; Reviewed.
Length = 328
Score = 28.0 bits (63), Expect = 2.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 158 EDHELDDPDFVTKRLL 173
ED EL DP ++RLL
Sbjct: 243 EDDELIDPTVSSERLL 258
>gnl|CDD|225819 COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate
transport and metabolism].
Length = 889
Score = 28.2 bits (63), Expect = 2.8
Identities = 16/67 (23%), Positives = 22/67 (32%)
Query: 39 CKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKE 98
LG++ I R+ R L P+I E LA D E +
Sbjct: 180 FLLGNLNAILERIAAVPSTRERETQAQFRAALAEILATPNIAACLDECLARFNADPEQLD 239
Query: 99 ALIEDKP 105
AL E +
Sbjct: 240 ALHERQH 246
>gnl|CDD|237248 PRK12890, PRK12890, allantoate amidohydrolase; Reviewed.
Length = 414
Score = 27.9 bits (63), Expect = 3.2
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 18/76 (23%)
Query: 55 ADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVA 114
DG+T LAEA RR +P P R A+L E IE P L A
Sbjct: 157 DDGTT--LAEALRRIGGDPDALPGALRPPGAVAAFL-------ELHIEQGPVLEA----- 202
Query: 115 SSGKPACTYGVVTTLV 130
G P GVVT +
Sbjct: 203 -EGLP---IGVVTAIQ 214
>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase,
MSMEG_0569 family. Members of this protein family
belong to a conserved seven-gene biosynthetic cluster
found sparsely in Cyanobacteria, Proteobacteria, and
Actinobacteria. Distant homologies to characterized
proteins suggest that members are enzymes dependent on a
flavinoid cofactor.
Length = 400
Score = 27.7 bits (62), Expect = 3.5
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 75 RDPDIRRWAAEGLA-YLTLDAEVKEALIEDKPALAALVDVASS 116
RD D+RR+A EG+ Y L+ +++E + P L A +D A +
Sbjct: 244 RDIDLRRFALEGMQLYGRLE-DIREGQLRFAPDLKANLDGADA 285
>gnl|CDD|199916 cd11307, M35_Asp_f2_like, Peptidase M35 domain of Asp f2, a major
allergen from Aspergillus fumigatus, and related
proteins; non catalytic. In this domain subgroup the
unique zinc-binding motif (the aspzincin motif,
characteristic of the M35 deuterolysin family, and
defined as the "HEXXH + D" motif: two His ligands and
Asp as third ligand), is poorly conserved and may not
bind Zinc. Members of this subgroup also lack a key
conserved Tyr residue which acts as a proton donor
during metallopeptidase catalysis. These include Asp f2,
a major allergen from Aspergillus fumigatus, which
reacts with serum from patients with ABPA (allergic
bronchopulmonary aspergillosis), and pH-regulated
antigen 1 (PRA1) from Candida albicans, which has a role
in fungal morphogenesis and perhaps in the host-parasite
interaction during candidal infection. No protease
activity has been detected for Asp f2 to date. This
subgroup also includes Saccharomyces cerevisiae Zps1p.
The expression of the Zsp1 gene is increased in response
to zinc deficiency; it is a target of the Zap1p
transcription factor.
Length = 179
Score = 26.9 bits (60), Expect = 4.9
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 133 CNAYDKQEI---IPEMIELAKFAKHHI 156
CNA ++++ + E +ELA AK H+
Sbjct: 2 CNATQRRQLSSALDETVELAAHAKDHL 28
>gnl|CDD|225532 COG2985, COG2985, Predicted permease [General function prediction
only].
Length = 544
Score = 27.4 bits (61), Expect = 5.4
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 103 DKPALAALVDVASSGKPACTYGVVTTLVNLC 133
D PALA D A + PA Y L
Sbjct: 500 DPPALAFANDAARTDAPALGYATTYPLAMFL 530
>gnl|CDD|146808 pfam04361, DUF494, Protein of unknown function (DUF494). Members
of this family of uncharacterized proteins are often
named Smg.
Length = 155
Score = 26.4 bits (59), Expect = 6.4
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 33 RALVGLCKLGSMGG--------SDASIRPFADGSTRKLAEACRRFL 70
+AL L L + SD+SIR + D KL CR FL
Sbjct: 42 KALDWLENLAELQDESPYLAAASDSSIRIYTDEEQEKLDTECRGFL 87
>gnl|CDD|233007 TIGR00522, dph5, diphthine synthase. Alternate name: diphthamide
biosynthesis S-adenosylmethionine-dependent
methyltransferase. This protein participates in the
modification of a specific His of elongation factor 2 of
eukarotes and Archaea to diphthamide. The protein was
characterized in Saccharomyces cerevisiae and designated
DPH5 [Protein fate, Protein modification and repair].
Length = 257
Score = 26.7 bits (59), Expect = 6.5
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 83 AAEGLAYL-TLDAEVKEALI-EDKPALAALVDVASSGKPACTYGVVTTLVNLCNAYDKQE 140
EGL L + + K I D A+ + A SGKP + L N YD E
Sbjct: 177 IGEGLENLLEEEEKRKTGAITPDTYAVV--IARAGSGKPVVKCDKIENLKN----YDFGE 230
Query: 141 IIPEMIELAKFAKHHIPED 159
+ ++ LAK H + +
Sbjct: 231 PLHCLVVLAKTL-HFMEFE 248
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 26.9 bits (60), Expect = 6.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 137 DKQEIIPEMIELAKFAKH 154
K+E++ E+I +KF K
Sbjct: 174 SKKEVMKEVIAKSKFYKA 191
>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 26.4 bits (59), Expect = 8.2
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 14 QGVDILKRLYMSKNENIRVRALVGLC----KLGSMGGSDASIRPFADGSTRKLAEACRRF 69
+ LK+L + N + V ALV + K S G A + FADG E RRF
Sbjct: 29 DSLQALKQLVLELNADKDVYALV-ITGDGEKFFSAG---ADLNLFADGDKAVAREMARRF 84
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.396
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,275,233
Number of extensions: 872852
Number of successful extensions: 938
Number of sequences better than 10.0: 1
Number of HSP's gapped: 935
Number of HSP's successfully gapped: 44
Length of query: 175
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 85
Effective length of database: 6,945,742
Effective search space: 590388070
Effective search space used: 590388070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)