RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14464
(175 letters)
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 159 bits (403), Expect = 5e-46
Identities = 121/165 (73%), Positives = 140/165 (84%)
Query: 11 IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFL 70
+ +QGVDILKRLY SKN+ IRVRALVGLCKLGS GG DA+IRPF DG+ KLAEACRRFL
Sbjct: 327 LCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFL 386
Query: 71 VNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLV 130
+ P +D DIRRWAA+GLAYLTLDAE KE LIEDK ++ AL+D+A G +C YGVVTT V
Sbjct: 387 IKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFV 446
Query: 131 NLCNAYDKQEIIPEMIELAKFAKHHIPEDHELDDPDFVTKRLLVL 175
NLCNAY+KQE++PEMIELAKFAK HIPE+HELDD DF+ KR+ VL
Sbjct: 447 NLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL 491
Score = 30.2 bits (67), Expect = 0.34
Identities = 14/148 (9%), Positives = 41/148 (27%), Gaps = 7/148 (4%)
Query: 3 IISHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKL 62
+ S + V L + + + ++ L K + D +++
Sbjct: 429 LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI 488
Query: 63 AEACRRFLVNP------ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASS 116
+ + + A L + E++ ++++ + AL+ +A
Sbjct: 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEG-GVKALLRMALE 547
Query: 117 GKPACTYGVVTTLVNLCNAYDKQEIIPE 144
G L + + +
Sbjct: 548 GTEKGKRHATQALARIGITINPEVSFSG 575
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 127 bits (320), Expect = 9e-35
Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 18/176 (10%)
Query: 3 IISHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKL 62
I T I + + +L+R E++++ + + L K S + ++L
Sbjct: 285 IDETMRTYITENYLQLLERSL--NVEDVQIYSALVLVKTWSFTK-------LTCINLKQL 335
Query: 63 AEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKP-AC 121
+E + R + E LAYL+L A VK + ++ L+ + S K C
Sbjct: 336 SEIFINAISR--RIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHC 393
Query: 122 TYGVVTTLVNLCNAYDK------QEIIPEMIELAKFAKHHIPEDHELDDPDFVTKR 171
YG++ + NL ++ + D +
Sbjct: 394 LYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN 449
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 1e-05
Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 34/175 (19%)
Query: 4 ISHSITSIIKQGVDILKRLYMSKNENIRVRALVG-LCKLGSMGGSDASIRPFADGSTRK- 61
+ SI+ + + + MSK+ L L ++ F + R
Sbjct: 38 VQDMPKSILSKEE--IDHIIMSKDAVSGTLRLFWTLLSKQEEM-----VQKFVEEVLRIN 90
Query: 62 ---LAEACRRFLVNPA---------RDP---DIRRWAAEGLAYLTLDAEVKEALIEDKPA 106
L + P+ RD D + +A ++ L ++++AL+E +PA
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 107 LAALVD-VASSGKPACTYGVVTTLV-NLCNAYDKQEIIPEMIELAKFAKHHIPED 159
L+D V SGK T + ++C +Y Q + I + PE
Sbjct: 151 KNVLIDGVLGSGK--------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 41.5 bits (97), Expect = 6e-05
Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 14/143 (9%)
Query: 15 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPA 74
+ L +L +++ + +A V + +L S +I + + +
Sbjct: 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMVSAIVR-----TMQNT 68
Query: 75 RDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC- 133
D + R A L L+ E A+ + + ALV + S + + +TTL NL
Sbjct: 69 NDVETARCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLL 127
Query: 134 -NAYDKQEI-----IPEMIELAK 150
K + + +M+ L
Sbjct: 128 HQEGAKMAVRLAGGLQKMVALLN 150
Score = 33.8 bits (77), Expect = 0.021
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 7/82 (8%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC-- 133
+ +A L L L E + + L +V + + L L
Sbjct: 111 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170
Query: 134 NAYDKQEI-----IPEMIELAK 150
N K I ++ + +
Sbjct: 171 NQESKLIILASGGPQALVNIMR 192
Score = 33.4 bits (76), Expect = 0.033
Identities = 30/141 (21%), Positives = 48/141 (34%), Gaps = 16/141 (11%)
Query: 8 ITSIIKQG-VDILKRLYMSKNENIRVRALVGLCKLGSMGGSD-ASIRPFADGSTRKLAEA 65
+ +QG + L +L + +++ + R +G + + G I G+ LA
Sbjct: 387 HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 446
Query: 66 CR-----------RFLVNPARDPD--IRRWAAEGLAYLTLDAEVKEALIEDKPALAALVD 112
V P I+R AA L L D E EA IE + A A L +
Sbjct: 447 VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEA-IEAEGATAPLTE 505
Query: 113 VASSGKPACTYGVVTTLVNLC 133
+ S L +
Sbjct: 506 LLHSRNEGVATYAAAVLFRMS 526
Score = 32.6 bits (74), Expect = 0.052
Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 11/141 (7%)
Query: 14 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNP 73
G+ + L N L L + G ++ + A G + L ++
Sbjct: 140 GGLQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVN-----IMRT 193
Query: 74 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133
+ + L L++ + K A++E + AL + + TL NL
Sbjct: 194 YTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLS 252
Query: 134 NAYDKQE----IIPEMIELAK 150
+A KQE ++ +++L
Sbjct: 253 DAATKQEGMEGLLGTLVQLLG 273
Score = 32.6 bits (74), Expect = 0.057
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 14/131 (10%)
Query: 15 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFAD-GSTRKLAEACRRFLVNP 73
G L + + + + L + ++ + G + L
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRV--LKVLSVCSSNKPAIVEAGGMQALGLHLT------ 234
Query: 74 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133
+ + L L ++ + L LV + S L NL
Sbjct: 235 DPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291
Query: 134 --NAYDKQEII 142
N +K +
Sbjct: 292 CNNYKNKMMVC 302
Score = 30.3 bits (68), Expect = 0.33
Identities = 20/143 (13%), Positives = 36/143 (25%), Gaps = 16/143 (11%)
Query: 15 GVDILKRLYMSKNENIRVRALVGLC-----------KLGSMGGSDASIRPFADGSTRKLA 63
G+ ++ +L + ++A VGL L G ++
Sbjct: 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 412
Query: 64 EACR----RFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKP 119
+ V R +I L L D + + + V + S
Sbjct: 413 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN-TIPLFVQLLYSPIE 471
Query: 120 ACTYGVVTTLVNLCNAYDKQEII 142
L L + E I
Sbjct: 472 NIQRVAAGVLCELAQDKEAAEAI 494
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 40.1 bits (94), Expect = 2e-04
Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 14/143 (9%)
Query: 15 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPA 74
+ L +L +++ + +A V + +L S + + + +
Sbjct: 18 AIPELTKLLNDEDQVVVNKAAVMVHQL-SKKEASRHAIMRSPQMVSAIVR-----TMQNT 71
Query: 75 RDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC- 133
D + R A L L+ E A+ + + ALV + S + + +TTL NL
Sbjct: 72 NDVETARCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
Query: 134 -NAYDKQEI-----IPEMIELAK 150
K + + +M+ L
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLN 153
Score = 32.8 bits (75), Expect = 0.040
Identities = 9/58 (15%), Positives = 16/58 (27%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133
+ +A L L L E + + L +V + + L L
Sbjct: 114 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171
Score = 32.4 bits (74), Expect = 0.070
Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 14/132 (10%)
Query: 14 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFAD-GSTRKLAEACRRFLVN 72
G L + + + + L + ++ + G + L
Sbjct: 185 GGPQALVNIMRTYTYEKLLWTTSRV--LKVLSVCSSNKPAIVEAGGMQALGLHLT----- 237
Query: 73 PARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNL 132
+ + L L+ A + + L LV + S L NL
Sbjct: 238 -DPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293
Query: 133 C--NAYDKQEII 142
N +K +
Sbjct: 294 TCNNYKNKMMVC 305
Score = 31.7 bits (72), Expect = 0.12
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 11/138 (7%)
Query: 15 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPA 74
G+ + L N L L + G ++ + A G + L ++
Sbjct: 144 GLQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVN-----IMRTY 197
Query: 75 RDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCN 134
+ + L L++ + K A++E + AL + + TL NL +
Sbjct: 198 TYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256
Query: 135 AYDKQEI----IPEMIEL 148
A KQE + +++L
Sbjct: 257 AATKQEGMEGLLGTLVQL 274
Score = 30.9 bits (70), Expect = 0.21
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 16/143 (11%)
Query: 15 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASI---------------RPFADGST 59
G+ ++ +L + ++A VGL + ++ ++ + R D
Sbjct: 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 415
Query: 60 RKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKP 119
R ++ V R +I L L D + + + V + S
Sbjct: 416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN-TIPLFVQLLYSPIE 474
Query: 120 ACTYGVVTTLVNLCNAYDKQEII 142
L L + E I
Sbjct: 475 NIQRVAAGVLCELAQDKEAAEAI 497
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 39.2 bits (91), Expect = 4e-04
Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 14/145 (9%)
Query: 11 IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFL 70
+ + + L +L +++ + +A V + +L S +I A R +
Sbjct: 147 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM-----VSAIVRTM 201
Query: 71 VNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLV 130
N D + R + L L+ E A+ + + ALV++ S + + +TTL
Sbjct: 202 QNT-NDVETARCTSGTLHNLSHHREGLLAIFKS-GGIPALVNMLGSPVDSVLFHAITTLH 259
Query: 131 NLC--NAYDKQEI-----IPEMIEL 148
NL K + + +M+ L
Sbjct: 260 NLLLHQEGAKMAVRLAGGLQKMVAL 284
Score = 36.9 bits (85), Expect = 0.002
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC-- 133
+ A L L L E + + L +V + + L L
Sbjct: 247 VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 306
Query: 134 NAYDKQEI-----IPEMIELAK 150
N K I ++ + +
Sbjct: 307 NQESKLIILASGGPQALVNIMR 328
Score = 35.8 bits (82), Expect = 0.005
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVD-VASSGKPACTYGVVTTLVNLCN 134
D + AA + L+ + A++ ++A+V + ++ TL NL +
Sbjct: 163 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH 222
Query: 135 AYD------KQEIIPEMIELAK 150
+ K IP ++ +
Sbjct: 223 HREGLLAIFKSGGIPALVNMLG 244
Score = 34.6 bits (79), Expect = 0.012
Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 19/162 (11%)
Query: 5 SHSITSIIKQG-VDILKRLYMSKNENIRVRALVGLCKLGSMGGSD------------ASI 51
+ + +QG + L +L + +++ + R +G + + G +
Sbjct: 520 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHIL 579
Query: 52 RPFADGSTRKLAEACRRFLVNPARDPD--IRRWAAEGLAYLTLDAEVKEALIEDKPALAA 109
V P I+R AA L L D E EA+ + A A
Sbjct: 580 ARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEG-ATAP 638
Query: 110 LVDVASSGKPACTYGVVTTLVNLC---NAYDKQEIIPEMIEL 148
L ++ S L + K+ + E+
Sbjct: 639 LTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSS 680
Score = 33.9 bits (77), Expect = 0.026
Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 14/131 (10%)
Query: 15 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFAD-GSTRKLAEACRRFLVNP 73
G L + + + + L + ++ + G + L
Sbjct: 319 GPQALVNIMRTYTYEKLLWTTSRV--LKVLSVCSSNKPAIVEAGGMQALGLHLT------ 370
Query: 74 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133
+ + L L+ A +E + L LV + S L NL
Sbjct: 371 DPSQRLVQNCLWTLRNLSDAATKQEGMEG---LLGTLVQLLGSDDINVVTCAAGILSNLT 427
Query: 134 --NAYDKQEII 142
N +K +
Sbjct: 428 CNNYKNKMMVC 438
Score = 33.5 bits (76), Expect = 0.035
Identities = 20/145 (13%), Positives = 39/145 (26%), Gaps = 20/145 (13%)
Query: 15 GVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFAD-------------GSTRK 61
G+ ++ +L + ++A VGL + ++ A+ P +
Sbjct: 489 GLPVVVKLLHPPSHWPLIKATVGL--IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 546
Query: 62 LAEACR----RFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSG 117
+ V R +I L L D + + + V + S
Sbjct: 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLN-TIPLFVQLLYSP 605
Query: 118 KPACTYGVVTTLVNLCNAYDKQEII 142
L L + E I
Sbjct: 606 IENIQRVAAGVLCELAQDKEAAEAI 630
Score = 33.1 bits (75), Expect = 0.040
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPAC-TYGVVTTLVNLC- 133
+ + L L + + +I ALV++ + + L L
Sbjct: 289 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348
Query: 134 NAYDKQEII 142
+ +K I+
Sbjct: 349 CSSNKPAIV 357
Score = 32.7 bits (74), Expect = 0.054
Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 11/139 (7%)
Query: 14 QGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNP 73
G+ + L N L L + G ++ + A G + L ++
Sbjct: 276 GGLQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVN-----IMRT 329
Query: 74 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133
+ + L L++ + K A++E + AL + + TL NL
Sbjct: 330 YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG-GMQALGLHLTDPSQRLVQNCLWTLRNLS 388
Query: 134 NAYDKQ----EIIPEMIEL 148
+A KQ ++ +++L
Sbjct: 389 DAATKQEGMEGLLGTLVQL 407
Score = 32.3 bits (73), Expect = 0.083
Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 8/132 (6%)
Query: 11 IIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFL 70
++ + L +L S + N+ A L L + + G L +
Sbjct: 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRT----V 450
Query: 71 VNPARDPDIRRWAAEGLAYLT---LDAEVKEALIEDKPALAALVDVASSGKPACTYGVVT 127
+ DI A L +LT DAE+ + + L +V +
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510
Query: 128 TLVNLCNAYDKQ 139
L+
Sbjct: 511 GLIRNLALCPAN 522
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 38.3 bits (89), Expect = 6e-04
Identities = 30/130 (23%), Positives = 43/130 (33%), Gaps = 18/130 (13%)
Query: 15 GVDILKRLYMSKNENIRVRALVGLCKL----------GSMGGSDASIRPFADGSTRKLAE 64
G+D K + E+ A+ L KL +GG ++ A+
Sbjct: 33 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGG----LQAIAELLQVDCEM 88
Query: 65 ACRRFLVNPARDPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASSGKPACTY 123
L N +RR+A L LT D K L K + ALV S
Sbjct: 89 YG---LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 145
Query: 124 GVVTTLVNLC 133
+ + L NL
Sbjct: 146 VIASVLRNLS 155
Score = 27.5 bits (61), Expect = 2.5
Identities = 12/74 (16%), Positives = 22/74 (29%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNA 135
I A L L+ + + D A++ L ++ S G L NL
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335
Query: 136 YDKQEIIPEMIELA 149
+ ++
Sbjct: 336 RPAKYKDANIMSPG 349
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 38.5 bits (89), Expect = 7e-04
Identities = 11/64 (17%), Positives = 27/64 (42%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNA 135
DP++ + ++YLT + ++ K + LV + + + + + N+
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 136 YDKQ 139
D+Q
Sbjct: 305 TDEQ 308
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 37.2 bits (86), Expect = 0.001
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 72 NPARDPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLV 130
N +RR+A L LT D K L K + ALV S + + L
Sbjct: 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 268
Query: 131 NLC 133
NL
Sbjct: 269 NLS 271
Score = 26.8 bits (59), Expect = 4.5
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 76 DPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133
I A L L+ + + +EAL + A++ L ++ S G L NL
Sbjct: 392 SLTIVSNACGTLWNLSARNPKDQEALWDMG-AVSMLKNLIHSKHKMIAMGSAAALRNLM 449
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 36.5 bits (84), Expect = 0.003
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNA 135
D + A ++YL+ + + D LV++ S + + N+
Sbjct: 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329
Query: 136 YDKQ-------EIIPEMIELAKFAKHHI 156
D Q ++P + L K +I
Sbjct: 330 NDLQTQVVINAGVLPALRLLLSSPKENI 357
Score = 36.2 bits (83), Expect = 0.004
Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 9/128 (7%)
Query: 8 ITSIIKQG-VDILKR-LYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEA 65
I +I+ G V L + ++ E +++ A L + S G+ A + D
Sbjct: 123 IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS--GTSAQTKVVVD---ADAVPL 177
Query: 66 CRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGV 125
+ L +++ A L + D+ + A+ ++ + +S KP+
Sbjct: 178 FIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTA 235
Query: 126 VTTLVNLC 133
TL NLC
Sbjct: 236 TWTLSNLC 243
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 36.0 bits (83), Expect = 0.004
Identities = 13/64 (20%), Positives = 22/64 (34%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNA 135
D D+ A L+YL+ K + D LV++ + + N+
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 136 YDKQ 139
D Q
Sbjct: 265 DDIQ 268
Score = 29.9 bits (67), Expect = 0.40
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 10/118 (8%)
Query: 19 LKRLYMSKNENIRVRALVGLCKLGSMGGS---DASIRPFADGSTRKLAEACRRFLVNPAR 75
+ + SK+ ++ A KL S + D I G + E +R
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS--TPGVVARFVEFLKR-----KE 77
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133
+ ++ +A L + ++ ++ A+ +++ SS V L N+
Sbjct: 78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIA 135
Score = 29.5 bits (66), Expect = 0.60
Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 16/153 (10%)
Query: 5 SHSITSIIKQG-VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFAD-GSTRKL 62
S +I+ G V I L S+ E+++ +A+ L + G S D L
Sbjct: 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI--AGDSTMCRDYVLDCNILPPL 154
Query: 63 AEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACT 122
+ L + + R A L+ L + P L L +
Sbjct: 155 LQ-----LFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVL 209
Query: 123 YGVVTTLVNLCNAYD-------KQEIIPEMIEL 148
L L + + + ++EL
Sbjct: 210 ADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL 242
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 34.5 bits (80), Expect = 0.010
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC-- 133
D + A L+ + + + D AL ALV + SS + L N+
Sbjct: 25 DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84
Query: 134 NAYDKQEI-----IPEMIELAKFAK 153
Q + +P +++L
Sbjct: 85 GNEQIQAVIDAGALPALVQLLSSPN 109
Score = 30.3 bits (69), Expect = 0.21
Identities = 9/58 (15%), Positives = 19/58 (32%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133
+ I + A L+ + ++ +++ AL L + S L L
Sbjct: 151 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208
Score = 29.9 bits (68), Expect = 0.32
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC-N 134
+ I + A L+ + + + D AL ALV + SS + L N+
Sbjct: 109 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168
Query: 135 AYDKQEIIPE 144
++++ + E
Sbjct: 169 GNEQKQAVKE 178
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 33.8 bits (77), Expect = 0.018
Identities = 18/140 (12%), Positives = 40/140 (28%), Gaps = 13/140 (9%)
Query: 18 ILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDP 77
++ R + +R RA + + + G+ RKL L++
Sbjct: 86 LVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLR-----LLDRDACD 139
Query: 78 DIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC---- 133
+R A ++ L + E + L+ L NL
Sbjct: 140 TVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP 199
Query: 134 ---NAYDKQEIIPEMIELAK 150
++ +++ L +
Sbjct: 200 EHKGTLCSMGMVQQLVALVR 219
Score = 33.1 bits (75), Expect = 0.036
Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC-- 133
++ +A L L + + + + LV + + V+ L +L
Sbjct: 180 VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239
Query: 134 NAYDKQEIIPEMIELAKFAKHHIPEDHELDD 164
+E + L + +H + ++
Sbjct: 240 FPQGVRECREPELGLEELLRHRCQLLQQHEE 270
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 33.8 bits (77), Expect = 0.019
Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 19/116 (16%)
Query: 42 GSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALI 101
GS + ++ L P AA + + +
Sbjct: 1 GSNADMEMTLERA------------VSMLEADHMLPSRISAAATFIQHECFQKSEARKRV 48
Query: 102 EDKPALAALVDVASSGKPACTYGVVTTLVNLC--NAYDKQEI-----IPEMIELAK 150
+ L+ + V L NL + +K E+ +P ++++ K
Sbjct: 49 NQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLK 104
Score = 29.9 bits (67), Expect = 0.35
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDV-ASSGKPACTYGVVTTLVNLCN 134
+ D++R L L + + + + + L+ V + + L NL +
Sbjct: 65 NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124
Query: 135 AYDKQEII 142
+ ++
Sbjct: 125 NDKLKNLM 132
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 32.3 bits (74), Expect = 0.052
Identities = 9/58 (15%), Positives = 19/58 (32%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133
+ I + A L+ + ++ +++ AL L + S L L
Sbjct: 193 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250
Score = 32.3 bits (74), Expect = 0.057
Identities = 13/58 (22%), Positives = 22/58 (37%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133
+ I + A L+ + + + D AL ALV + SS + L N+
Sbjct: 109 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166
Score = 31.9 bits (73), Expect = 0.080
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNA 135
D + A + + D + + D AL ALV + SS + L N+ +
Sbjct: 25 DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84
Query: 136 YDKQ-------EIIPEMIELAK 150
++Q +P +++L
Sbjct: 85 GNEQIQAVIDAGALPALVQLLS 106
Score = 31.9 bits (73), Expect = 0.085
Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 20/145 (13%)
Query: 16 VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRR---FLVN 72
+ + + S + ++ A ++ S + I+ D A A L +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS--DGNEQIQAVID------AGALPALVQLLSS 65
Query: 73 PARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNL 132
P + I + A L+ + + + D AL ALV + SS + L N+
Sbjct: 66 P--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 133 C--NAYDKQEI-----IPEMIELAK 150
Q + +P +++L
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLS 148
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 32.1 bits (72), Expect = 0.071
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 74 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133
++D + A + + E + + + LVD+ S L NL
Sbjct: 13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV 72
Query: 134 -------NAYDKQEIIPEMIEL 148
+Q I E + L
Sbjct: 73 FRSTTNKLETRRQNGIREAVSL 94
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.10
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 15/38 (39%)
Query: 26 KNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLA 63
K ++ KL AS++ +AD S LA
Sbjct: 19 KQA-LK--------KL------QASLKLYADDSAPALA 41
Score = 26.5 bits (57), Expect = 4.5
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 92 LDAEVKEALIEDKPALA--ALVD 112
L A +K + PALA A ++
Sbjct: 25 LQASLKLYADDSAPALAIKATME 47
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 31.1 bits (69), Expect = 0.19
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC-- 133
++ AA L +L + + + + LV + K G L N+
Sbjct: 61 LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120
Query: 134 ------NAYDKQEIIPEMIELAK 150
A + +P ++ L +
Sbjct: 121 RDQDNKIAIKNCDGVPALVRLLR 143
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 30.9 bits (70), Expect = 0.19
Identities = 24/154 (15%), Positives = 37/154 (24%), Gaps = 28/154 (18%)
Query: 16 VDILKRLYMSKNENIRVRALVGLCKLGS----------MGGSDASIRPFA------DGST 59
D L RL N R+ + L G + R
Sbjct: 25 DDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC 84
Query: 60 RKLAEACRRFLVNPA---RDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASS 116
+K + L N A + +R A E A I + A
Sbjct: 85 KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFD 139
Query: 117 GKPACTYGVVTTLVNLCNAYDKQEIIPEMIELAK 150
+ + + + IP +I L K
Sbjct: 140 KSTNVRRATAFAISVI----NDKATIPLLINLLK 169
Score = 28.6 bits (64), Expect = 0.96
Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 19/88 (21%)
Query: 16 VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPAR 75
V+ + K+ N+R + + + L +P
Sbjct: 130 VEQSQITAFDKSTNVRRATAFAISVIND----------------KATIPLLINLLKDP-- 171
Query: 76 DPDIRRWAAEGLAYLTL-DAEVKEALIE 102
+ D+R WAA + ++++++ +E
Sbjct: 172 NGDVRNWAAFAININKYDNSDIRDCFVE 199
Score = 28.2 bits (63), Expect = 1.3
Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 14/100 (14%)
Query: 16 VDILKRLYMSKNENIRVRALV--GLCKLGSMGGSDASIRPFADGS--TRKLA-------- 63
+ +L L N ++R A + K + D + D + R A
Sbjct: 161 IPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220
Query: 64 -EACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIE 102
+ L + + + E L D + L
Sbjct: 221 DKRVLSVLCDELKKNTVYDDIIEAAGELG-DKTLLPVLDT 259
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 29.7 bits (67), Expect = 0.43
Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 17/118 (14%)
Query: 16 VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPAR 75
V+ + N IR A+ + + D T L E R+ L +
Sbjct: 88 VNSFVKDCEDPNPLIRALAVRTMGCIRV------------DKITEYLCEPLRKCLKD--E 133
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC 133
DP +R+ AA + L + ++ED+ L +L D+ + P V L +
Sbjct: 134 DPYVRKTAA--VCVAKLHDINAQ-MVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 188
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 28.5 bits (64), Expect = 0.83
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 19/87 (21%)
Query: 16 VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPAR 75
V++ + + +R A L K+G + L +A +
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP------------LIKALKD------E 62
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIE 102
D +RR AA+ L + D E LI+
Sbjct: 63 DAWVRRAAADALGQIG-DERAVEPLIK 88
Score = 28.1 bits (63), Expect = 1.5
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 19/87 (21%)
Query: 16 VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPAR 75
V+ L + ++ +R+ A L ++G + E + L +
Sbjct: 114 VEPLIKALKDEDWFVRIAAAFALGEIGD----------------ERAVEPLIKALKDE-- 155
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIE 102
D +R+ AA+ L + V+ A+ +
Sbjct: 156 DGWVRQSAADALGEIG-GERVRAAMEK 181
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.97
Identities = 24/118 (20%), Positives = 35/118 (29%), Gaps = 26/118 (22%)
Query: 83 AAEGLAYLTLDAEVKEA---LIEDKPALAALVDVAS----SGKPACTYGVVTTLVNLCNA 135
+ L + V + L K +LV+ A SG P YG+ TL
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 136 YDK-QEIIPEMIELAKF------------------AKHHIPEDHELDDPDFVTKRLLV 174
Q IP KF A I +D ++ F K + +
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Score = 26.2 bits (57), Expect = 7.0
Identities = 19/150 (12%), Positives = 40/150 (26%), Gaps = 46/150 (30%)
Query: 7 SITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEAC 66
++ + + Y+ N+ + AL A + D + K E
Sbjct: 79 QFDQVLNLCLTEFENCYLEGND---IHALA------------AKLLQENDTTLVKTKELI 123
Query: 67 RRFL---------VNPARDPDIRRWAAEGLA----------------------YLTLDAE 95
+ ++ + + + R EG A Y T
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 96 VKEALIEDKPALAALVDVASSGKPACTYGV 125
V + + L+ L+ + T G+
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 28.1 bits (62), Expect = 1.6
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 16 VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPAR 75
V + SKN ++ AL + +G + PF L +
Sbjct: 146 VRDFMSMLSSKNREDKLTALNFIEAMGENSFK--YVNPFLPRIINLLHD----------G 193
Query: 76 DPDIRRWAAEGLAYL-TLDAEVKEALIE 102
D +R A E L +L TL+ ++++ +I+
Sbjct: 194 DEIVRASAVEALVHLATLNDKLRKVVIK 221
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 27.9 bits (61), Expect = 1.9
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 16 VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPAR 75
+ ++ L +E R+RA V L ++ SD + +N
Sbjct: 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDV---------FINALS 85
Query: 76 --DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKP 119
+ + A L YL D + A LV + S
Sbjct: 86 QENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDD 129
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 26.9 bits (60), Expect = 2.1
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 27/106 (25%)
Query: 16 VDILKRLYMSKNENIRVRALVGLCKLGS---------MGGSDASIRPFADGSTRKLAEAC 66
+ +N+ +R L ++G + D IR A A
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAA-------AWII 66
Query: 67 RRF--------LVNPARDPD--IRRWAAEGLAYLTLDAEVKEALIE 102
F L+ D +R AA L + V+ A+ +
Sbjct: 67 GNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIG-GERVRAAMEK 111
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 26.9 bits (60), Expect = 2.8
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 16 VDILKRLYMSKNENIRVRALVGLCKLGS----------MGGSDASIRPFADGSTRKL-AE 64
V++ + + +R A L K+G + DA +R A + ++ E
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE 75
Query: 65 ACRRFLVNPARDPD--IRRWAAEGLAYLTLDAEVKEALIE 102
L+ +D D +R+ AA L + D E LI+
Sbjct: 76 RAVEPLIKALKDEDGWVRQSAAVALGQIG-DERAVEPLIK 114
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis
complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Length = 157
Score = 26.8 bits (59), Expect = 2.9
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 18 ILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPARDP 77
+ KR+ +KN + + AL L G A + E+ + P +P
Sbjct: 58 VKKRIVGNKNFHEVMLALTVLETCVKNCGHRF-HVLVAS---QDFVESVLVRTILPKNNP 113
Query: 78 DIR 80
Sbjct: 114 PTI 116
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 4.0
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 25/92 (27%)
Query: 76 DPD-IRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCN 134
+P+ IR+W E L + +A K + A +L
Sbjct: 83 EPESIRKWREEQRKRL----QELDA--ASKVMEQEWREKAKK--------------DLEE 122
Query: 135 AYDKQEIIPEMIELAKFAKHHIPEDHELDDPD 166
+Q E +E K + I + PD
Sbjct: 123 WNQRQS---EQVEKNK-INNRIADKAFYQQPD 150
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural
genomics, PSI, protein struct initiative; 1.80A
{Archaeoglobus fulgidus} SCOP: c.87.1.8
Length = 177
Score = 26.4 bits (59), Expect = 4.4
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 54 FADGSTRKLAEACRRFLVNPAR-DPDIRRWAAE 85
+ ++ +A ++ NP + D R A E
Sbjct: 144 LVNADVNEIIDAMKKVSKNPDKFKKDCFRRAKE 176
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.8 bits (59), Expect = 5.3
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 27/91 (29%)
Query: 45 GGSDASIRPFADG-------STRKL--------AEACRRFLVNPARDPDIRRW---AAEG 86
GG D + S AE R R A+G
Sbjct: 1131 GGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPA--------TTTRNGFMEAQG 1182
Query: 87 LAYLTLDAEVKEALIEDKPALAALVDVASSG 117
+ + AL P + A++
Sbjct: 1183 AGIQII-MQADLALKMGVPIYGIVAMAATAT 1212
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt,
metalloprotein, sulfenic acid, sulfinic acid, nitrIle
hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A
{Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C*
2dd4_C*
Length = 243
Score = 25.8 bits (56), Expect = 7.6
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 68 RFLVNPARDPDIRRWAAEGLAYL-TLDAEVKEALIEDKPALAALVDVASSGKPA 120
R++V P R W + LA + T D + A+ + + A V + +P
Sbjct: 186 RYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 26.1 bits (57), Expect = 8.7
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 10/91 (10%)
Query: 2 LIISHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRK 61
L K + + R+ N+R L K+G + + +
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS--------E 558
Query: 62 LAEACRRFLVNPARDPDIRRWAAEGLAYLTL 92
+ + + D D++ +A E L L+L
Sbjct: 559 VKPILEKLTQDQ--DVDVKYFAQEALTVLSL 587
>2ib0_A Conserved hypothetical alanine rich protein; 4-helix bundle,
structural genomics, PSI-2, protein structur initiative;
2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.9
Length = 170
Score = 25.5 bits (55), Expect = 8.7
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 47 SDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPA 106
S A A A A R +V A D R +A+ L + A ++ P
Sbjct: 95 SAADAARLAVRMENDGATAWR-AVVEHAETADDRVFASTALTESAVMATRWNRVLGAWPI 153
Query: 107 LAAL 110
AA
Sbjct: 154 TAAF 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.396
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,876,755
Number of extensions: 176309
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 94
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)