RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14464
(175 letters)
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 31.4 bits (69), Expect = 0.058
Identities = 15/91 (16%), Positives = 23/91 (25%), Gaps = 1/91 (1%)
Query: 52 RPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALV 111
R D R ++ V R +I L L D + + + V
Sbjct: 408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN-TIPLFV 466
Query: 112 DVASSGKPACTYGVVTTLVNLCNAYDKQEII 142
+ S L L + E I
Sbjct: 467 QLLYSPIENIQRVAAGVLCELAQDKEAAEAI 497
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 30.2 bits (66), Expect = 0.12
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 76 DPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLC- 133
D + A + + D K+ + + + LVD+ S L NL
Sbjct: 15 DEKYQAIGAYYIQHTCFQDESAKQQVYQLG-GICKLVDLLRSPNQNVQQAAAGALRNLVF 73
Query: 134 -NAYDKQEII 142
+ +K E
Sbjct: 74 RSTTNKLETR 83
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 29.4 bits (65), Expect = 0.23
Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Query: 60 RKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKP 119
+ +FL + + ++R A E + L EA+ + + + +
Sbjct: 320 VRACNQLGQFLQHR--ETNLRYLALESMCTLASSEFSHEAVKTHIETV--INALKTERDV 375
Query: 120 ACTYGVVTTLVNLCNAYDKQEIIPEMIELAKFAKHHIPED 159
+ V L +C+ + Q+I+ EM+ + A + I E+
Sbjct: 376 SVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREE 415
Score = 26.3 bits (57), Expect = 2.4
Identities = 20/140 (14%), Positives = 47/140 (33%), Gaps = 21/140 (15%)
Query: 3 IISHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKL 62
++ +S + +I+ + +K S+N AL + +G +R++
Sbjct: 92 VLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG----------------SREM 135
Query: 63 AEACRRFLVNPARDPDIR---RWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKP 119
AEA + D + +A L L L + L+ + +V + +
Sbjct: 136 AEAFAGEIPKILVAGDTMDSVKQSAA-LCLLRLYRTSPD-LVPMGDWTSRVVHLLNDQHL 193
Query: 120 ACTYGVVTTLVNLCNAYDKQ 139
+ + L ++
Sbjct: 194 GVVTAATSLITTLAQKNPEE 213
>d2izpa1 a.250.1.1 (A:1035-1301) Putative membrane antigen BipD
{Burkholderia pseudomallei [TaxId: 28450]}
Length = 267
Score = 29.1 bits (65), Expect = 0.25
Identities = 25/75 (33%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 46 GSDASIRPFADG--STRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIED 103
G A++ F D + R A A R L R E L TLD E I+
Sbjct: 43 GRRANLTVFDDARVAVRGHARAQRNLL---------ERLETELLGG-TLDTAGDEGGIQP 92
Query: 104 KPALAALVDVASSGK 118
P L LVDV GK
Sbjct: 93 DPILQGLVDVIGQGK 107
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella
typhimurium [TaxId: 90371]}
Length = 411
Score = 26.2 bits (57), Expect = 2.6
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 60 RKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKP 119
L + + + RD W A +DA + + AL ++G P
Sbjct: 71 YDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQ--GYQHFFALLGAASAVTTGHP 128
Query: 120 A 120
Sbjct: 129 E 129
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA
ligase {Bacillus stearothermophilus [TaxId: 1422]}
Length = 312
Score = 26.1 bits (56), Expect = 3.0
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 137 DKQEIIPEMIELAKFAKHHIPEDHELDDP 165
D+Q+ EL + + E + LD P
Sbjct: 1 DRQQAERRAAELRELLNRYGYEYYVLDRP 29
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 25.9 bits (55), Expect = 3.7
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 10/97 (10%)
Query: 16 VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPAR 75
+ + + N R+ L + L + G D + T+ + R +P
Sbjct: 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT--------TKHMLPTVLRMAGDP-- 531
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVD 112
++R A+ L + + E KP L L
Sbjct: 532 VANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQ 568
Score = 24.8 bits (52), Expect = 8.1
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 1 MLIISHSITSIIKQGVDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTR 60
+L K + + R+ N+R L K+G + + +
Sbjct: 506 VLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---------Q 556
Query: 61 KLAEACRRFLVNPARDPDIRRWAAEGLAYLTL 92
+ L +D D++ +A E L L+L
Sbjct: 557 SEVKPILEKLTQ-DQDVDVKYFAQEALTVLSL 587
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 25.5 bits (55), Expect = 3.9
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 17/128 (13%)
Query: 16 VDILKRLYMSKNENIRVRALVGLCKLGSMGGSDASIRPFADGSTRKLAEACRRFLVNPAR 75
V+ + N IR A+ + + D T L E R+ L +
Sbjct: 85 VNSFVKDCEDPNPLIRALAVRTMGCIRV------------DKITEYLCEPLRKCLKDE-- 130
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNA 135
DP +R+ AA +A L ++ ++ED+ L +L D+ + P V L + +
Sbjct: 131 DPYVRKTAAVCVAKL---HDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 187
Query: 136 YDKQEIIP 143
+ ++
Sbjct: 188 HPNSNLLD 195
>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 275
Score = 25.6 bits (55), Expect = 4.1
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 60 RKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKP 119
R L +V ARD + A + L L + I+D ++ AL D
Sbjct: 21 RDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLR---- 76
Query: 120 ACTYGVVTTLVNLCNA 135
YG + LVN NA
Sbjct: 77 -KEYGGLDVLVN--NA 89
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 24.4 bits (51), Expect = 9.4
Identities = 6/74 (8%), Positives = 18/74 (24%), Gaps = 11/74 (14%)
Query: 76 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSGKPACTYGVVTTLVNLCNA 135
+ R +A L + A+ ++ S L +
Sbjct: 32 NSLKRISSARVLQL-----------RGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC 80
Query: 136 YDKQEIIPEMIELA 149
++ + ++
Sbjct: 81 KKCEDNVFNILNNM 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.396
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 671,109
Number of extensions: 30296
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 21
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)