BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14465
         (75 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
          Length = 810

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 59/70 (84%)

Query: 2   GGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDK 61
           GG DA+IRPF DG+  KLAEACRRFL+ P +D DIRRWAA+GLAYLTLDAE KE LIEDK
Sbjct: 361 GGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDK 420

Query: 62  PALAALVDVA 71
            ++ AL+D+A
Sbjct: 421 ASIHALMDLA 430


>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2
           Protein From Bacteroides Thetaiotaomicron
          Length = 1000

 Score = 32.0 bits (71), Expect = 0.096,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 5   DASIRPFADGSTRKLAEACRRFLV-NPARDPDIRRWAAEGLAYLTLDAEVKEA 56
           DAS +   +GS +  +      +V +  R PD+RRW AE     TL  E+K+A
Sbjct: 265 DASDKTVLEGSRKLESHGSGNLIVFDEQRLPDVRRWNAEHPELYTLLLELKDA 317


>pdb|1IQZ|A Chain A, Oxidized [4fe-4s] Ferredoxin From Bacillus
          Thermoproteolyticus (Form I)
 pdb|1IR0|A Chain A, Oxidized [4fe-4s] Ferredoxin From Bacillus
          Thermoproteolyticus (Form Ii)
 pdb|1WTF|A Chain A, Crystal Structure Of Bacillus Thermoproteolyticus
          Ferredoxin Variants Containing Unexpected [3fe-4s]
          Cluster That Is Linked To Coenzyme A At 1.6 A
          Resolution
 pdb|1WTF|B Chain B, Crystal Structure Of Bacillus Thermoproteolyticus
          Ferredoxin Variants Containing Unexpected [3fe-4s]
          Cluster That Is Linked To Coenzyme A At 1.6 A
          Resolution
 pdb|1WTF|C Chain C, Crystal Structure Of Bacillus Thermoproteolyticus
          Ferredoxin Variants Containing Unexpected [3fe-4s]
          Cluster That Is Linked To Coenzyme A At 1.6 A
          Resolution
 pdb|1WTF|D Chain D, Crystal Structure Of Bacillus Thermoproteolyticus
          Ferredoxin Variants Containing Unexpected [3fe-4s]
          Cluster That Is Linked To Coenzyme A At 1.6 A
          Resolution
          Length = 81

 Score = 28.9 bits (63), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 21 EACRRFLVNPARDPDIRRWAAEGLAYLTLD-----AEVKEALIED 60
          E C       A  PDI  +  +G+AY+TLD      EV + LI+D
Sbjct: 9  ETCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDD 53


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,166,081
Number of Sequences: 62578
Number of extensions: 70461
Number of successful extensions: 178
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 3
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)