Query psy14465
Match_columns 75
No_of_seqs 48 out of 50
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 20:33:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4151|consensus 98.4 9.2E-08 2E-12 81.3 1.7 65 1-73 339-403 (748)
2 PF13646 HEAT_2: HEAT repeats; 82.8 3.4 7.3E-05 23.9 4.1 29 18-48 31-59 (88)
3 PRK09687 putative lyase; Provi 63.8 8.8 0.00019 28.6 3.1 18 31-48 170-187 (280)
4 PF03130 HEAT_PBS: PBS lyase H 62.1 19 0.00042 18.1 3.7 25 36-71 1-25 (27)
5 PF01698 FLO_LFY: Floricaula / 58.4 5.3 0.00011 32.7 1.2 12 18-29 254-265 (386)
6 cd08818 CARD_MDA5_1 Caspase ac 52.8 36 0.00079 22.6 4.3 43 13-62 1-44 (88)
7 PF07571 DUF1546: Protein of u 46.6 59 0.0013 20.6 4.5 38 18-57 47-84 (92)
8 cd07321 Extradiol_Dioxygenase_ 46.5 22 0.00047 22.3 2.4 20 46-65 11-30 (77)
9 cd00020 ARM Armadillo/beta-cat 41.4 61 0.0013 18.9 3.7 41 32-72 61-101 (120)
10 PLN03200 cellulose synthase-in 40.4 43 0.00093 32.7 4.2 50 24-74 696-747 (2102)
11 PF02985 HEAT: HEAT repeat; I 39.0 31 0.00067 17.4 1.9 17 31-47 11-27 (31)
12 PF14384 DUF4415: Domain of un 35.3 36 0.00078 20.3 2.0 24 47-70 33-56 (62)
13 PF15306 LIN37: LIN37 33.3 34 0.00074 23.5 1.9 25 4-30 23-47 (148)
14 PF06812 ImpA-rel_N: ImpA-rela 31.8 63 0.0014 18.9 2.7 28 18-45 4-31 (62)
15 PF13628 DUF4142: Domain of un 31.3 80 0.0017 20.6 3.4 30 18-47 100-129 (139)
16 PRK13700 conjugal transfer pro 29.3 1.4E+02 0.003 26.5 5.2 54 16-72 343-406 (732)
17 cd07922 CarBa CarBa is the A s 29.2 51 0.0011 21.3 2.1 18 47-64 13-30 (81)
18 PF03668 ATP_bind_2: P-loop AT 29.1 86 0.0019 24.4 3.7 33 23-63 185-217 (284)
19 PRK05416 glmZ(sRNA)-inactivati 28.3 92 0.002 23.7 3.6 31 26-63 190-220 (288)
20 PF07746 LigA: Aromatic-ring-o 27.5 58 0.0013 21.2 2.1 16 49-64 9-24 (88)
21 COG2922 Smg Uncharacterized pr 26.8 30 0.00064 25.4 0.7 43 1-43 63-109 (157)
22 PF15596 Imm34: Immunity prote 26.6 72 0.0016 22.2 2.6 45 14-72 15-59 (110)
23 PF04677 CwfJ_C_1: Protein sim 25.3 73 0.0016 21.3 2.4 25 45-69 58-82 (121)
24 PF12177 Proho_convert: Prohor 24.8 66 0.0014 18.9 1.8 14 59-72 26-39 (41)
25 PRK14757 putative protamine-li 24.6 34 0.00075 18.7 0.6 18 8-25 1-19 (29)
26 cd07923 Gallate_dioxygenase_C 24.5 68 0.0015 21.4 2.1 17 49-65 16-32 (94)
27 PF13376 OmdA: Bacteriocin-pro 24.2 1E+02 0.0022 18.1 2.6 27 47-73 4-30 (63)
28 TIGR02270 conserved hypothetic 23.6 59 0.0013 26.0 2.0 19 31-49 189-207 (410)
29 PF06917 Pectate_lyase_2: Peri 22.5 50 0.0011 28.5 1.4 15 31-45 324-338 (557)
30 PF10412 TrwB_AAD_bind: Type I 21.9 1.5E+02 0.0034 22.9 3.9 49 22-73 180-232 (386)
31 PF15553 TEX19: Testis-express 21.9 39 0.00084 24.9 0.6 12 37-48 7-18 (160)
32 PRK04330 hypothetical protein; 21.9 1.1E+02 0.0025 20.3 2.8 19 30-48 25-43 (88)
33 PF05947 DUF879: Bacterial pro 21.9 1.9E+02 0.0041 24.0 4.6 39 29-70 35-74 (602)
34 COG3514 Uncharacterized protei 21.7 55 0.0012 22.1 1.2 18 44-61 57-74 (93)
35 PF08535 KorB: KorB domain; I 21.6 2.1E+02 0.0046 17.6 4.3 34 37-70 17-54 (93)
36 PF04695 Pex14_N: Peroxisomal 21.4 86 0.0019 21.2 2.2 15 17-31 3-17 (136)
37 KOG3440|consensus 21.3 96 0.0021 21.9 2.4 40 22-61 5-55 (122)
38 PHA00680 hypothetical protein 21.0 1.6E+02 0.0035 20.9 3.5 42 18-72 76-117 (143)
39 PRK15215 fimbriae biosynthesis 20.7 91 0.002 21.3 2.1 29 17-49 48-80 (100)
40 TIGR03359 VI_chp_6 type VI sec 20.3 2.2E+02 0.0048 23.7 4.7 39 29-70 35-74 (598)
No 1
>KOG4151|consensus
Probab=98.41 E-value=9.2e-08 Score=81.28 Aligned_cols=65 Identities=29% Similarity=0.402 Sum_probs=61.2
Q ss_pred CCCCcccccccCcchHHHHHHHHhhhhcCCCCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 1 MGGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 1 agG~d~s~~~faegst~kLak~cRk~L~n~~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~laks 73 (75)
+||++.+..+|++++.++|++.||.|++..+++.|.| |+++|+++||++++|...++++..++..
T Consensus 339 vtit~~a~l~l~~sa~i~l~~~~r~~~ve~s~~qd~r--------y~s~~a~~ke~~i~d~~s~~aln~l~~~ 403 (748)
T KOG4151|consen 339 VTITTTAELRLAESAVIKLGKTLRFYVVEVSPEQDPR--------YLSIDAELKELKIEDSSSSKALNGLKGD 403 (748)
T ss_pred eeeeehhhhhhhhHHHHHHHHHhhhheeecCccccch--------hhccccchhhhhccccchHHHHHhhhcc
Confidence 4788999999999999999999999999999999998 9999999999999999999999988764
No 2
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=82.79 E-value=3.4 Score=23.92 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=21.5
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHhhhhhhc
Q psy14465 18 KLAEACRRFLVNPARDPDIRRWAAEGLAYLT 48 (75)
Q Consensus 18 kLak~cRk~L~n~~~d~d~rrWA~EGLAYLT 48 (75)
+........| ...++.+|+.|+..|+.+.
T Consensus 31 ~~~~~L~~~l--~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 31 EAIPALIELL--KDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHHHH--TSSSHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHH--cCCCHHHHHHHHHHHHHhC
Confidence 4445555555 3578899999999999984
No 3
>PRK09687 putative lyase; Provisional
Probab=63.81 E-value=8.8 Score=28.65 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.3
Q ss_pred CCChhHHHHHHhhhhhhc
Q psy14465 31 ARDPDIRRWAAEGLAYLT 48 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLT 48 (75)
..++++|+||+++|..+-
T Consensus 170 d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 170 DPNGDVRNWAAFALNSNK 187 (280)
T ss_pred CCCHHHHHHHHHHHhcCC
Confidence 357789999999999884
No 4
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=62.09 E-value=19 Score=18.06 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=18.0
Q ss_pred HHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHh
Q psy14465 36 IRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVA 71 (75)
Q Consensus 36 ~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~la 71 (75)
+|++|+.+|..+- |+.++..|.+.-
T Consensus 1 VR~~Aa~aLg~ig-----------d~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIG-----------DPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG------------SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC-----------CHHHHHHHHHHh
Confidence 5889999998764 577777776654
No 5
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=58.38 E-value=5.3 Score=32.66 Aligned_cols=12 Identities=50% Similarity=1.032 Sum_probs=10.7
Q ss_pred HHHHHHhhhhcC
Q psy14465 18 KLAEACRRFLVN 29 (75)
Q Consensus 18 kLak~cRk~L~n 29 (75)
-|++|||+||+.
T Consensus 254 HLYEQCr~FL~q 265 (386)
T PF01698_consen 254 HLYEQCREFLIQ 265 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999984
No 6
>cd08818 CARD_MDA5_1 Caspase activation and recruitment domain found in MDA5, first repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), first repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-
Probab=52.79 E-value=36 Score=22.61 Aligned_cols=43 Identities=37% Similarity=0.401 Sum_probs=30.2
Q ss_pred cchHHHHHHHHhhhhcCCCCChhHHHHHHhhhhhhc-cCHHHHHHhhcCHH
Q psy14465 13 DGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLT-LDAEVKEALIEDKP 62 (75)
Q Consensus 13 egst~kLak~cRk~L~n~~~d~d~rrWA~EGLAYLT-lDAdVKE~lveD~~ 62 (75)
+++...|...+|.+|..-=...-+ |.||+ |.+|+||.+-....
T Consensus 1 d~~~~~ll~~Fr~rlk~~i~v~~V-------L~~l~~L~~e~ke~I~a~~~ 44 (88)
T cd08818 1 DENFRYLISCFRPRLKRYIRVEPV-------LDYLTFLEAEVKERIRAAAA 44 (88)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHH-------hhhcccCCHHHHHHHHHHHH
Confidence 356778889999998863322223 67776 79999999866554
No 7
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=46.61 E-value=59 Score=20.62 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=30.7
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHhhhhhhccCHHHHHHh
Q psy14465 18 KLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEAL 57 (75)
Q Consensus 18 kLak~cRk~L~n~~~d~d~rrWA~EGLAYLTlDAdVKE~l 57 (75)
++.+.+.+-+.+++++..+.==|+-||+.| -.++-+.+
T Consensus 47 Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l--G~~~vr~~ 84 (92)
T PF07571_consen 47 RITRTLLKALLDPKKPLGTHYGAIVGLSAL--GPEAVRAL 84 (92)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHH--HHHHHHHh
Confidence 678888888999999888888899999998 55555543
No 8
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=46.54 E-value=22 Score=22.29 Aligned_cols=20 Identities=35% Similarity=0.389 Sum_probs=16.4
Q ss_pred hhccCHHHHHHhhcCHHHHH
Q psy14465 46 YLTLDAEVKEALIEDKPALA 65 (75)
Q Consensus 46 YLTlDAdVKE~lveD~~aL~ 65 (75)
.+-.||+.+|.+.+||+++=
T Consensus 11 ~~~~~~~~re~f~~dp~a~~ 30 (77)
T cd07321 11 QLLVKPEVKERFKADPEAVL 30 (77)
T ss_pred HHhcCHHHHHHHHhCHHHHH
Confidence 46678999999999998763
No 9
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=41.44 E-value=61 Score=18.86 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=30.0
Q ss_pred CChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhh
Q psy14465 32 RDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVAS 72 (75)
Q Consensus 32 ~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~lak 72 (75)
.++.+++.|+--|..|+.+.........+...+..|.++-.
T Consensus 61 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~ 101 (120)
T cd00020 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD 101 (120)
T ss_pred CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHh
Confidence 57899999999999999888554444445556666666543
No 10
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=40.42 E-value=43 Score=32.73 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=39.3
Q ss_pred hhhhcC--CCCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhhcc
Q psy14465 24 RRFLVN--PARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74 (75)
Q Consensus 24 Rk~L~n--~~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~laks~ 74 (75)
=+-||+ ...+.+++..|+++|+.|.-|+|+++++.+. ..+..|+++-+++
T Consensus 696 V~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~-~~I~~Lv~lLr~G 747 (2102)
T PLN03200 696 IKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAE-DIILPLTRVLREG 747 (2102)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhc-CcHHHHHHHHHhC
Confidence 334554 3568899999999999999999999998854 4578888877664
No 11
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=39.00 E-value=31 Score=17.42 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=13.4
Q ss_pred CCChhHHHHHHhhhhhh
Q psy14465 31 ARDPDIRRWAAEGLAYL 47 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYL 47 (75)
..++++|..|++.|.-+
T Consensus 11 D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 11 DPSPEVRQAAAECLGAI 27 (31)
T ss_dssp -SSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 35889999999998644
No 12
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=35.27 E-value=36 Score=20.35 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=18.4
Q ss_pred hccCHHHHHHhhcCHHHHHHHHHH
Q psy14465 47 LTLDAEVKEALIEDKPALAALVDV 70 (75)
Q Consensus 47 LTlDAdVKE~lveD~~aL~al~~l 70 (75)
|.||+||-|+|-+...--|.+++-
T Consensus 33 irld~dVl~~fka~G~gyQtriN~ 56 (62)
T PF14384_consen 33 IRLDPDVLEWFKAQGKGYQTRINE 56 (62)
T ss_pred EEeCHHHHHHHHHHChhHHHHHHH
Confidence 579999999998877666666553
No 13
>PF15306 LIN37: LIN37
Probab=33.33 E-value=34 Score=23.48 Aligned_cols=25 Identities=20% Similarity=0.526 Sum_probs=19.4
Q ss_pred CcccccccCcchHHHHHHHHhhhhcCC
Q psy14465 4 SDASIRPFADGSTRKLAEACRRFLVNP 30 (75)
Q Consensus 4 ~d~s~~~faegst~kLak~cRk~L~n~ 30 (75)
-.+.+.+|.|++- |+-.||.|+-|.
T Consensus 23 RsvdLa~f~~~tp--LY~lCRaWm~N~ 47 (148)
T PF15306_consen 23 RSVDLAQFSENTP--LYPLCRAWMRNQ 47 (148)
T ss_pred ceeeecccCCCCc--HHHHHHHHHccC
Confidence 3466778887653 899999999885
No 14
>PF06812 ImpA-rel_N: ImpA-related N-terminal; InterPro: IPR010657 This entry represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=31.83 E-value=63 Score=18.88 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=23.4
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHhhhh
Q psy14465 18 KLAEACRRFLVNPARDPDIRRWAAEGLA 45 (75)
Q Consensus 18 kLak~cRk~L~n~~~d~d~rrWA~EGLA 45 (75)
++.+.|...|.+.+||-.+--|=++++.
T Consensus 4 ~v~~~~~~lL~~~sKDlrv~~~l~~a~~ 31 (62)
T PF06812_consen 4 KVEELALELLSEQSKDLRVAVWLTEALL 31 (62)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 5678999999999999988888877664
No 15
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=31.26 E-value=80 Score=20.59 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=22.3
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHhhhhhh
Q psy14465 18 KLAEACRRFLVNPARDPDIRRWAAEGLAYL 47 (75)
Q Consensus 18 kLak~cRk~L~n~~~d~d~rrWA~EGLAYL 47 (75)
+....+.+++.....++++|.||.+-|..|
T Consensus 100 ~~l~~~~~~~~~~~~~~~lk~~a~~~lp~l 129 (139)
T PF13628_consen 100 KALALFEKQLAASGKDPELKAFAQETLPVL 129 (139)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHhHHH
Confidence 344556666677788999999998887654
No 16
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=29.34 E-value=1.4e+02 Score=26.45 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhhc---CCCCChhHHHHHHh-------hhhhhccCHHHHHHhhcCHHHHHHHHHHhh
Q psy14465 16 TRKLAEACRRFLV---NPARDPDIRRWAAE-------GLAYLTLDAEVKEALIEDKPALAALVDVAS 72 (75)
Q Consensus 16 t~kLak~cRk~L~---n~~~d~d~rrWA~E-------GLAYLTlDAdVKE~lveD~~aL~al~~lak 72 (75)
++...-.+-+||- ..+.+-++|.|--. |-=|||.+++.++.+ .+.+..++++|=
T Consensus 343 vL~~yi~~lr~L~~~~~~g~~FSIRdWi~~~~~~~~~g~LFIt~~~~~~~~L---rPLISlwld~Ai 406 (732)
T PRK13700 343 VLTNYVKAIRYLQGIEHNGEPFTIRDWMRGVREDQKNGWLFISSNADTHASL---KPVISMWLSIAI 406 (732)
T ss_pred HHHHHHHHHHhhhhcccCCCCccHHHHHhhccccCCCceEEEeeCHHHHHHH---HHHHHHHHHHHH
Confidence 5555666667776 33567899999853 578999999999988 677777777764
No 17
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=29.22 E-value=51 Score=21.28 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=16.0
Q ss_pred hccCHHHHHHhhcCHHHH
Q psy14465 47 LTLDAEVKEALIEDKPAL 64 (75)
Q Consensus 47 LTlDAdVKE~lveD~~aL 64 (75)
|.-|++.+|.+.+||+++
T Consensus 13 L~~dp~~rerF~~DPea~ 30 (81)
T cd07922 13 LFKDPGLIERFQDDPSAV 30 (81)
T ss_pred HhcCHHHHHHHHHCHHHH
Confidence 556999999999999987
No 18
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=29.08 E-value=86 Score=24.45 Aligned_cols=33 Identities=36% Similarity=0.575 Sum_probs=26.6
Q ss_pred HhhhhcCCCCChhHHHHHHhhhhhhccCHHHHHHhhcCHHH
Q psy14465 23 CRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPA 63 (75)
Q Consensus 23 cRk~L~n~~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~a 63 (75)
+| ||-||-+.+++|. .--+|++|.+.+-+++.+
T Consensus 185 vR-fLpNP~y~~~Lr~-------lTG~D~~V~~yv~~~~~~ 217 (284)
T PF03668_consen 185 VR-FLPNPYYVPELRP-------LTGLDKPVQDYVLSDPEA 217 (284)
T ss_pred cC-cCCCCCCChhhhh-------cCCCChHHHHHHHcChhH
Confidence 44 8999999988875 344899999999988765
No 19
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=28.26 E-value=92 Score=23.66 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=23.4
Q ss_pred hhcCCCCChhHHHHHHhhhhhhccCHHHHHHhhcCHHH
Q psy14465 26 FLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPA 63 (75)
Q Consensus 26 ~L~n~~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~a 63 (75)
||-||-+++++| .+=-+|++|.+.+-+++++
T Consensus 190 ~lpNP~~~~~lr-------~~tG~d~~v~~~v~~~~~~ 220 (288)
T PRK05416 190 FLPNPHYDPELR-------PLTGLDKPVADYVLAQPEV 220 (288)
T ss_pred cCCCCCCChhhc-------cCCCCCHHHHHHHHcChhH
Confidence 777877777776 2334899999999888854
No 20
>PF07746 LigA: Aromatic-ring-opening dioxygenase LigAB, LigA subunit; InterPro: IPR011986 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A (IPR004183 from INTERPRO) and B (IPR004183 from INTERPRO). LigAB is a protocatechuate 4,5-dioxygenase (1.13.11.8 from EC) that belongs to the extradiol class III enzyme family. The LigA subunit of this enzyme is multi-helical, containing a compact array of 6 short helices [].; PDB: 1BOU_A 1B4U_A.
Probab=27.54 E-value=58 Score=21.15 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=13.0
Q ss_pred cCHHHHHHhhcCHHHH
Q psy14465 49 LDAEVKEALIEDKPAL 64 (75)
Q Consensus 49 lDAdVKE~lveD~~aL 64 (75)
.||+.+|.+.+||+++
T Consensus 9 ~~~~~r~~F~~D~~a~ 24 (88)
T PF07746_consen 9 NDPENRERFLADPEAY 24 (88)
T ss_dssp GSHHHHHHHHH-HHHH
T ss_pred cCHHHHHHHHHCHHHH
Confidence 6899999999999876
No 21
>COG2922 Smg Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.80 E-value=30 Score=25.41 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=31.3
Q ss_pred CCCCcccccccCcchHHHHHHHHhhhhcC----CCCChhHHHHHHhh
Q psy14465 1 MGGSDASIRPFADGSTRKLAEACRRFLVN----PARDPDIRRWAAEG 43 (75)
Q Consensus 1 agG~d~s~~~faegst~kLak~cRk~L~n----~~~d~d~rrWA~EG 43 (75)
+|+...++|-++..-+.+|=..||.|++= .--..++|.=-+|-
T Consensus 63 ~~s~~~~lRIYt~EE~~rL~~e~rGfllfLeq~~vl~~etREmVI~r 109 (157)
T COG2922 63 SGSDPLALRIYTPEECDRLDAECRGFLLFLEQIQVLNLETREMVIER 109 (157)
T ss_pred cCCCCcceEeeCHHHHhccCHHHHHHHHHHHHHcccChhHHHHHHHH
Confidence 36677899999999999999999999863 12344555544443
No 22
>PF15596 Imm34: Immunity protein 34
Probab=26.57 E-value=72 Score=22.22 Aligned_cols=45 Identities=27% Similarity=0.258 Sum_probs=27.9
Q ss_pred chHHHHHHHHhhhhcCCCCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhh
Q psy14465 14 GSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVAS 72 (75)
Q Consensus 14 gst~kLak~cRk~L~n~~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~lak 72 (75)
|++-+-|-..|.|=|- -|.=|.|||+||.-.- .+.++++|.+|-.
T Consensus 15 ~~e~~~a~s~~~~a~a------~~~~aelgl~~l~~s~--------s~~~~~~LvnL~r 59 (110)
T PF15596_consen 15 GVESEAACSARQVACA------AAVIAELGLAALGPSV--------SDAALDHLVNLMR 59 (110)
T ss_pred hhhHHhhhcccchhhh------hhHHHHHHHHHhCccc--------CHHHHHHHHHHHh
Confidence 3444444444555442 2344899999998653 6777888877643
No 23
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=25.32 E-value=73 Score=21.33 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=20.1
Q ss_pred hhhccCHHHHHHhhcCHHHHHHHHH
Q psy14465 45 AYLTLDAEVKEALIEDKPALAALVD 69 (75)
Q Consensus 45 AYLTlDAdVKE~lveD~~aL~al~~ 69 (75)
+.+++|.||-+++-+=...|..||.
T Consensus 58 s~~~~de~~~~Ei~~f~~~L~~mf~ 82 (121)
T PF04677_consen 58 SLTELDEEVWEEIRNFQKSLRKMFA 82 (121)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999877777777764
No 24
>PF12177 Proho_convert: Prohormone convertase enzyme; InterPro: IPR022005 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with PF01483 from PFAM, PF00082 from PFAM. There are two completely conserved residues (Y and D) that may be functionally important. This protein is the C-terminal domain of a prohormone convertase enzyme which targets hormones in dense core secretory granules. This C-terminal tail domain is the domain responsible for targeting these dense core secretory granules. The domain adopts an alpha helical structure []. ; PDB: 2KE3_A 2KDT_A.
Probab=24.83 E-value=66 Score=18.93 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=11.3
Q ss_pred cCHHHHHHHHHHhh
Q psy14465 59 EDKPALAALVDVAS 72 (75)
Q Consensus 59 eD~~aL~al~~lak 72 (75)
.|...|||||++-+
T Consensus 26 RDDrLlQAL~~~l~ 39 (41)
T PF12177_consen 26 RDDRLLQALFDILN 39 (41)
T ss_dssp SCHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHc
Confidence 57889999999853
No 25
>PRK14757 putative protamine-like protein; Provisional
Probab=24.58 E-value=34 Score=18.67 Aligned_cols=18 Identities=61% Similarity=1.014 Sum_probs=13.5
Q ss_pred ccccCcchHHHHH-HHHhh
Q psy14465 8 IRPFADGSTRKLA-EACRR 25 (75)
Q Consensus 8 ~~~faegst~kLa-k~cRk 25 (75)
|++|..|||..-| +.||+
T Consensus 1 mrsfdqgstraparercrr 19 (29)
T PRK14757 1 MRSFDQGSTRAPARERCRR 19 (29)
T ss_pred CcccccccccccHHHHHHh
Confidence 6789999997665 45775
No 26
>cd07923 Gallate_dioxygenase_C The C-terminal domain of Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of the PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. This model represents the C-terminal domain, which is similar to the A subunit of PCA 4,5-dioxygenase (or LigAB). The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. Since enzymes in this subfamily have fused A and B subunits, the dimer interface may resemble the tetramer interface of classical LigAB enzymes. This enzyme belongs to the class III extradiol dioxygenase family, composed of enzymes whi
Probab=24.47 E-value=68 Score=21.45 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=15.1
Q ss_pred cCHHHHHHhhcCHHHHH
Q psy14465 49 LDAEVKEALIEDKPALA 65 (75)
Q Consensus 49 lDAdVKE~lveD~~aL~ 65 (75)
.+|+.+|.+.+||+++=
T Consensus 16 ~~a~~RerF~~D~ea~~ 32 (94)
T cd07923 16 IEPAHRERFLEDPEALF 32 (94)
T ss_pred CCHHHHHHHHhCHHHHH
Confidence 59999999999999863
No 27
>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated
Probab=24.24 E-value=1e+02 Score=18.05 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=21.2
Q ss_pred hccCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 47 LTLDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 47 LTlDAdVKE~lveD~~aL~al~~laks 73 (75)
+.+++|..+.|-+|+.+.+.--.|.++
T Consensus 4 ~~vP~dl~~aL~~~p~a~~~f~~l~~~ 30 (63)
T PF13376_consen 4 VEVPEDLEAALEANPEAKEFFESLTPS 30 (63)
T ss_pred CCCCHHHHHHHHCCHHHHHHHHHCCHH
Confidence 578899999999999988776666543
No 28
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=23.64 E-value=59 Score=26.01 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=16.3
Q ss_pred CCChhHHHHHHhhhhhhcc
Q psy14465 31 ARDPDIRRWAAEGLAYLTL 49 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTl 49 (75)
..++++|+||++||+.+--
T Consensus 189 d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 189 DSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 5789999999999987744
No 29
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=22.45 E-value=50 Score=28.45 Aligned_cols=15 Identities=33% Similarity=0.780 Sum_probs=12.8
Q ss_pred CCChhHHHHHHhhhh
Q psy14465 31 ARDPDIRRWAAEGLA 45 (75)
Q Consensus 31 ~~d~d~rrWA~EGLA 45 (75)
..+.++++|+||||.
T Consensus 324 ~~~~~~l~W~i~gL~ 338 (557)
T PF06917_consen 324 QDDKEMLTWAIDGLK 338 (557)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 468899999999983
No 30
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=21.93 E-value=1.5e+02 Score=22.88 Aligned_cols=49 Identities=35% Similarity=0.550 Sum_probs=30.6
Q ss_pred HHhhhhcCCCCChhHHHHHHhh----hhhhccCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 22 ACRRFLVNPARDPDIRRWAAEG----LAYLTLDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 22 ~cRk~L~n~~~d~d~rrWA~EG----LAYLTlDAdVKE~lveD~~aL~al~~laks 73 (75)
.+-++|-+...+-++|.|--++ .-+|+.|++.++.+ .+.+.+++++|=+
T Consensus 180 ~~~~~L~~~~~~FSir~wi~~~~~~~~Lfl~~~~~~~~~~---~plis~~l~~a~~ 232 (386)
T PF10412_consen 180 SPLRFLADAWGDFSIRDWIRNPDEKGWLFLTSDPDYRSAL---RPLISAWLDLAIS 232 (386)
T ss_dssp HHHHHS-----S--HHHHHH-TT-G--EEEEE-GGGHHHH---HHHHHHHHHHHHH
T ss_pred HHHHhhccccCCCcHHHHhcCCCCCcEEEEeeCHHHHHHH---HHHHHHHHHHHHH
Confidence 3445555555788899998776 57999999999987 7888888887743
No 31
>PF15553 TEX19: Testis-expressed protein 19
Probab=21.92 E-value=39 Score=24.88 Aligned_cols=12 Identities=50% Similarity=0.935 Sum_probs=10.2
Q ss_pred HHHHHhhhhhhc
Q psy14465 37 RRWAAEGLAYLT 48 (75)
Q Consensus 37 rrWA~EGLAYLT 48 (75)
.|.+.||++||-
T Consensus 7 ~r~~~eGmSyL~ 18 (160)
T PF15553_consen 7 VRYGAEGMSYLY 18 (160)
T ss_pred hhhhhhhHHHHH
Confidence 488999999984
No 32
>PRK04330 hypothetical protein; Provisional
Probab=21.91 E-value=1.1e+02 Score=20.31 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=11.8
Q ss_pred CCCChhHHHHHHhhhhhhc
Q psy14465 30 PARDPDIRRWAAEGLAYLT 48 (75)
Q Consensus 30 ~~~d~d~rrWA~EGLAYLT 48 (75)
++-+..+||=|-|-...|.
T Consensus 25 ~sVPRNIRraa~ea~~~L~ 43 (88)
T PRK04330 25 TSVPRNIRRAATEAKEILL 43 (88)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 4566667776666666653
No 33
>PF05947 DUF879: Bacterial protein of unknown function (DUF879); InterPro: IPR010272 This entry represents a protein family associated with type VI secretion in a number of pathogenic bacteria [, ]. Mutation is associated with impaired virulence, such as impaired infection of plants by Rhizobium leguminosarum.
Probab=21.90 E-value=1.9e+02 Score=24.05 Aligned_cols=39 Identities=31% Similarity=0.623 Sum_probs=29.5
Q ss_pred CCCCChhHHHHHHhhhhhhccCHHHHHHhhcC-HHHHHHHHHH
Q psy14465 29 NPARDPDIRRWAAEGLAYLTLDAEVKEALIED-KPALAALVDV 70 (75)
Q Consensus 29 n~~~d~d~rrWA~EGLAYLTlDAdVKE~lveD-~~aL~al~~l 70 (75)
+...|+++.| =+||.|||| |-++++|-+| |+..++|+++
T Consensus 35 ~~~~DP~VER-LlEgfAfLt--Ari~~kLDd~~Pe~t~~LL~~ 74 (602)
T PF05947_consen 35 DESEDPHVER-LLEGFAFLT--ARIRQKLDDEFPELTESLLEV 74 (602)
T ss_pred CCCCCchHHH-HHHHHHHHH--HHHHHHHhccCHHHHHHHHHh
Confidence 3568999965 589999998 8888888555 5566777664
No 34
>COG3514 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.67 E-value=55 Score=22.11 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=14.9
Q ss_pred hhhhccCHHHHHHhhcCH
Q psy14465 44 LAYLTLDAEVKEALIEDK 61 (75)
Q Consensus 44 LAYLTlDAdVKE~lveD~ 61 (75)
+.=|-|||||-|+|-++.
T Consensus 57 ~vslRiDaDVle~fra~G 74 (93)
T COG3514 57 LVSLRIDADVLEKFRAGG 74 (93)
T ss_pred eeeeEecHHHHHHHHcCC
Confidence 456789999999998874
No 35
>PF08535 KorB: KorB domain; InterPro: IPR013741 This entry contains several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This domain includes the DNA-binding HTH motif []. ; PDB: 1R71_C.
Probab=21.61 E-value=2.1e+02 Score=17.62 Aligned_cols=34 Identities=38% Similarity=0.542 Sum_probs=21.4
Q ss_pred HHHHHhhhhhhccCHHHHHHhhc----CHHHHHHHHHH
Q psy14465 37 RRWAAEGLAYLTLDAEVKEALIE----DKPALAALVDV 70 (75)
Q Consensus 37 rrWA~EGLAYLTlDAdVKE~lve----D~~aL~al~~l 70 (75)
+-|=..=|+++.|+.+|++-+.+ |..++..|..+
T Consensus 17 ~s~Vs~~l~Ll~lP~~i~~~v~~g~~~~~~a~~~L~~~ 54 (93)
T PF08535_consen 17 RSWVSNHLALLDLPEEIKELVRSGRISDIRALYELRKL 54 (93)
T ss_dssp HHHHHHHHGGGS--HHHHHHHHTTS---HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHcCCCchHHHHHHHHHH
Confidence 56778889999999999997652 44444444443
No 36
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=21.44 E-value=86 Score=21.17 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=13.3
Q ss_pred HHHHHHHhhhhcCCC
Q psy14465 17 RKLAEACRRFLVNPA 31 (75)
Q Consensus 17 ~kLak~cRk~L~n~~ 31 (75)
..|.+++++||-|++
T Consensus 3 e~li~~A~~FL~~p~ 17 (136)
T PF04695_consen 3 EDLIEQAVKFLQDPK 17 (136)
T ss_dssp HHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhCCcc
Confidence 478999999999986
No 37
>KOG3440|consensus
Probab=21.35 E-value=96 Score=21.94 Aligned_cols=40 Identities=30% Similarity=0.333 Sum_probs=24.4
Q ss_pred HHhhhhcCCCCChhHHHHHHh-------hhh----hhccCHHHHHHhhcCH
Q psy14465 22 ACRRFLVNPARDPDIRRWAAE-------GLA----YLTLDAEVKEALIEDK 61 (75)
Q Consensus 22 ~cRk~L~n~~~d~d~rrWA~E-------GLA----YLTlDAdVKE~lveD~ 61 (75)
...+|-.+++.-.-+++|++- ||- |.-.|.||||.+-.=|
T Consensus 5 ~~~~~~~~~k~~~~~~~~~~nl~g~rkyGL~~DDl~~e~n~dvkeAlrRLP 55 (122)
T KOG3440|consen 5 YIQKSPVLGKLFLPLRKWAYNLSGFRKYGLRYDDLYYEENEDVKEALRRLP 55 (122)
T ss_pred hHHHcccchHHHHHHHHHHHHHhhhhhhCccccccccccCHHHHHHHHHCc
Confidence 334445555555567777772 332 3455999999886544
No 38
>PHA00680 hypothetical protein
Probab=21.02 E-value=1.6e+02 Score=20.91 Aligned_cols=42 Identities=36% Similarity=0.537 Sum_probs=26.6
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhh
Q psy14465 18 KLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVAS 72 (75)
Q Consensus 18 kLak~cRk~L~n~~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~lak 72 (75)
.||+.|-..|++|....-+ ...||---||| |+.||+=+++||
T Consensus 76 alaqlcdamligpantaal----lnalaaadlda---------peslkaeldlak 117 (143)
T PHA00680 76 ALAQLCDAMLIGPANTAAL----LNALAAADLDA---------PESLKAELDLAK 117 (143)
T ss_pred HHHHHhHHHhcCcccHHHH----HHHHHhhccCC---------hHHHHHHHhHHH
Confidence 6899999999998765544 23444444554 445555555555
No 39
>PRK15215 fimbriae biosynthesis regulatory protein; Provisional
Probab=20.71 E-value=91 Score=21.25 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=21.6
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHhh----hhhhcc
Q psy14465 17 RKLAEACRRFLVNPARDPDIRRWAAEG----LAYLTL 49 (75)
Q Consensus 17 ~kLak~cRk~L~n~~~d~d~rrWA~EG----LAYLTl 49 (75)
.|.-.+.|.|||.. -+|||+||= -+|+|+
T Consensus 48 ~KvI~AL~dyLV~G----~trkevCe~~~Vn~gYfS~ 80 (100)
T PRK15215 48 EKIIQALRDYLVFG----VSRKDVCERYEVNNGYFST 80 (100)
T ss_pred HHHHHHHHHHHHcC----ccHHHHHHccCCCHHHHHH
Confidence 46778889999954 478999994 456664
No 40
>TIGR03359 VI_chp_6 type VI secretion protein, VC_A0110 family. This protein family is associated with type VI secretion in a number of pathogenic bacteria. Mutation is associated with impaired virulence, such as impaired infection of plants by Rhizobium leguminosarum.
Probab=20.33 E-value=2.2e+02 Score=23.73 Aligned_cols=39 Identities=36% Similarity=0.640 Sum_probs=29.8
Q ss_pred CCCCChhHHHHHHhhhhhhccCHHHHHHhhcC-HHHHHHHHHH
Q psy14465 29 NPARDPDIRRWAAEGLAYLTLDAEVKEALIED-KPALAALVDV 70 (75)
Q Consensus 29 n~~~d~d~rrWA~EGLAYLTlDAdVKE~lveD-~~aL~al~~l 70 (75)
....|+++.| =+||.|||| |.++++|-++ |+..++|+++
T Consensus 35 ~~~~DP~VER-LlEgfAfLt--ARi~~kLDd~~Pe~t~~Ll~~ 74 (598)
T TIGR03359 35 EESEDPHVER-LLEGFAFLT--ARIRQKLDDDFPELTEALLEV 74 (598)
T ss_pred CCCCCchHHH-HHHHHHHHH--HHHHhHhhcccHHHHHHHHHh
Confidence 3578999966 599999998 8888888554 5666777764
Done!