Query psy14465
Match_columns 75
No_of_seqs 48 out of 50
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 20:33:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3now_A UNC-45 protein, SD10334 99.5 1.3E-14 4.4E-19 119.6 8.5 73 2-74 361-433 (810)
2 3opb_A SWI5-dependent HO expre 99.5 1.1E-14 3.6E-19 120.8 5.6 61 11-73 327-387 (778)
3 2fq3_A Transcription regulator 79.2 1.2 4.1E-05 29.0 2.4 48 14-70 43-90 (104)
4 1jdh_A Beta-catenin; beta-cate 79.0 8.2 0.00028 27.2 6.8 42 31-72 28-69 (529)
5 1jdh_A Beta-catenin; beta-cate 77.9 2.3 7.9E-05 30.1 3.7 42 31-73 71-112 (529)
6 4hxt_A De novo protein OR329; 75.5 4.4 0.00015 25.4 4.2 42 31-73 97-139 (252)
7 1xm9_A Plakophilin 1; armadill 72.5 3.9 0.00013 30.0 3.8 39 31-71 98-136 (457)
8 4db6_A Armadillo repeat protei 70.8 14 0.00048 22.9 5.7 41 32-73 150-191 (210)
9 4db6_A Armadillo repeat protei 70.2 8.4 0.00029 23.9 4.6 42 31-73 23-65 (210)
10 2z6h_A Catenin beta-1, beta-ca 68.7 15 0.00051 27.7 6.4 57 11-73 11-67 (644)
11 1te4_A Conserved protein MTH18 67.1 8.1 0.00028 23.1 3.9 17 32-48 54-70 (131)
12 2z6h_A Catenin beta-1, beta-ca 65.9 8.2 0.00028 29.1 4.5 42 31-73 68-109 (644)
13 3ul1_B Importin subunit alpha- 63.0 6.2 0.00021 29.2 3.3 43 31-73 243-285 (510)
14 2z6g_A B-catenin; FULL-length, 62.7 6.4 0.00022 31.2 3.5 41 32-73 205-245 (780)
15 4hxt_A De novo protein OR329; 60.8 15 0.00051 22.9 4.4 41 32-73 140-181 (252)
16 2z6g_A B-catenin; FULL-length, 59.8 18 0.00062 28.6 5.6 43 31-73 161-203 (780)
17 4db8_A Armadillo-repeat protei 59.6 13 0.00044 23.7 3.9 49 22-73 142-191 (252)
18 3tpo_A Importin subunit alpha- 58.5 7.5 0.00026 28.7 3.0 43 31-73 262-304 (529)
19 2dce_A KIAA1915 protein; swirm 54.5 6.1 0.00021 25.7 1.8 48 14-70 44-93 (111)
20 4db8_A Armadillo-repeat protei 53.7 19 0.00064 22.9 4.0 42 32-73 108-149 (252)
21 1xqr_A HSPBP1 protein; armadil 51.0 17 0.00057 25.9 3.7 41 32-73 179-220 (296)
22 1xqr_A HSPBP1 protein; armadil 47.7 33 0.0011 24.3 4.9 42 31-73 93-135 (296)
23 4b8j_A Importin subunit alpha- 41.4 44 0.0015 24.0 4.7 40 33-73 131-171 (528)
24 3nmz_A APC variant protein; pr 40.3 27 0.00092 26.6 3.6 39 31-70 254-294 (458)
25 3ltm_A Alpha-REP4; protein eng 38.4 70 0.0024 19.8 5.3 16 32-47 124-139 (211)
26 3ltj_A Alpharep-4; protein eng 38.0 54 0.0019 20.2 4.3 18 31-48 118-135 (201)
27 1oyz_A Hypothetical protein YI 37.9 52 0.0018 21.4 4.3 15 33-47 172-186 (280)
28 2v8i_A Pectate lyase; periplas 35.1 15 0.00051 30.3 1.5 15 31-45 313-327 (543)
29 3now_A UNC-45 protein, SD10334 33.8 45 0.0015 27.7 4.2 44 31-74 676-720 (810)
30 1xm9_A Plakophilin 1; armadill 31.5 59 0.002 23.7 4.1 42 32-73 155-196 (457)
31 3nmw_A APC variant protein; AR 31.5 58 0.002 23.6 4.1 41 33-73 97-138 (354)
32 2vy1_A Protein leafy, leafy; D 30.1 18 0.00063 26.0 1.2 13 17-29 31-43 (194)
33 3nmw_A APC variant protein; AR 29.6 43 0.0015 24.3 3.1 42 32-73 183-225 (354)
34 2jdq_A Importin alpha-1 subuni 29.3 1.2E+02 0.004 20.7 5.1 40 32-72 204-244 (450)
35 2jbm_A Nicotinate-nucleotide p 29.0 15 0.00051 26.8 0.6 20 41-60 5-28 (299)
36 3nmz_A APC variant protein; pr 28.3 67 0.0023 24.4 4.1 43 31-73 298-341 (458)
37 2qsb_A UPF0147 protein TA0600; 27.9 64 0.0022 20.7 3.4 8 55-62 62-69 (89)
38 3l6x_A Catenin delta-1; cateni 26.4 52 0.0018 26.2 3.3 51 14-71 133-183 (584)
39 3tt9_A Plakophilin-2; cell adh 26.2 85 0.0029 21.8 4.1 50 13-69 93-142 (233)
40 3v2d_U 50S ribosomal protein L 25.2 43 0.0015 22.2 2.2 29 47-75 88-117 (118)
41 4b8j_A Importin subunit alpha- 24.9 45 0.0015 23.9 2.5 42 31-72 255-296 (528)
42 3tt9_A Plakophilin-2; cell adh 24.7 1.1E+02 0.0038 21.2 4.4 42 32-73 163-205 (233)
43 3ul1_B Importin subunit alpha- 24.3 73 0.0025 23.4 3.5 42 31-73 327-369 (510)
44 1iap_A Guanine nucleotide exch 24.0 29 0.00098 25.3 1.3 26 30-56 45-80 (211)
45 3tpo_A Importin subunit alpha- 23.9 67 0.0023 23.6 3.3 41 32-73 132-173 (529)
46 2qzg_A Conserved uncharacteriz 23.8 77 0.0026 20.5 3.2 33 30-62 30-73 (94)
47 2jdq_A Importin alpha-1 subuni 22.4 1E+02 0.0035 21.0 3.8 42 31-73 245-287 (450)
48 3r8s_Q 50S ribosomal protein L 20.6 36 0.0012 22.6 1.1 28 47-74 87-115 (117)
49 2p6v_A Transcription initiatio 20.1 50 0.0017 22.1 1.8 38 15-52 14-61 (114)
No 1
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.54 E-value=1.3e-14 Score=119.62 Aligned_cols=73 Identities=68% Similarity=1.144 Sum_probs=69.4
Q ss_pred CCCcccccccCcchHHHHHHHHhhhhcCCCCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhhcc
Q psy14465 2 GGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74 (75)
Q Consensus 2 gG~d~s~~~faegst~kLak~cRk~L~n~~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~laks~ 74 (75)
|++|.++++|++|++..|++.|+++|.++++|.+.|+||+|||+|||+|++||+.++.|..+++.|+++.+++
T Consensus 361 ~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~ 433 (810)
T 3now_A 361 GGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG 433 (810)
T ss_dssp TTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT
T ss_pred cccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC
Confidence 4568899999999999999999999999988999999999999999999999999999999999999999863
No 2
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.1e-14 Score=120.84 Aligned_cols=61 Identities=21% Similarity=0.214 Sum_probs=56.0
Q ss_pred cCcchHHHHHHHHhhhhcCCCCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 11 FADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 11 faegst~kLak~cRk~L~n~~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~laks 73 (75)
.+++++.+|+++|++||+++. .+-|+||+|||||||+|++|||.|++|+.+|++|+++.|+
T Consensus 327 ~~~~si~~La~~~~~~L~~~~--~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~ 387 (778)
T 3opb_A 327 LTCINLKQLSEIFINAISRRI--VPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKS 387 (778)
T ss_dssp CTTCCHHHHHHHHHHHTTTCC--HHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhC
Confidence 368899999999999999864 3449999999999999999999999999999999999985
No 3
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=79.19 E-value=1.2 Score=29.04 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=41.0
Q ss_pred chHHHHHHHHhhhhcCCCCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHH
Q psy14465 14 GSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDV 70 (75)
Q Consensus 14 gst~kLak~cRk~L~n~~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~l 70 (75)
+.|-+..+.+|-|+++ .|-..---|||+ .+|+.-|+.|..++.+++++
T Consensus 43 ~ktpe~Yl~iRN~iI~--------~yr~nP~~yLT~-t~~r~~l~gDv~~i~RVh~F 90 (104)
T 2fq3_A 43 SKTPEVYMRYRNFMVN--------SYRLNPNEYFSV-TTARRNVSGDAAALFRLHKF 90 (104)
T ss_dssp TSCHHHHHHHHHHHHH--------HHHHCTTSCCCH-HHHHHHSCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--------HHHhCCceeeeH-HHHHHHccccHHHHHHHHHH
Confidence 3588999999999985 788888889999 46778899999999999875
No 4
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=78.95 E-value=8.2 Score=27.22 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=37.2
Q ss_pred CCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhh
Q psy14465 31 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVAS 72 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~lak 72 (75)
..++.+|.-|++-|..|+-+.+.++.++..+..+..|+++-+
T Consensus 28 ~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~ 69 (529)
T 1jdh_A 28 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ 69 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHh
Confidence 468899999999999999999999999988888888887654
No 5
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=77.91 E-value=2.3 Score=30.08 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=35.4
Q ss_pred CCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 31 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~laks 73 (75)
+.+.++|+.|+..|..|+.+.+.++.+++. ..+..|+++-++
T Consensus 71 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~-g~i~~L~~lL~~ 112 (529)
T 1jdh_A 71 TNDVETARCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGS 112 (529)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHHHHHHHHHT-THHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHcCchhHHHHHHc-CCHHHHHHHHcC
Confidence 358899999999999999999999988865 778888777654
No 6
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=75.47 E-value=4.4 Score=25.41 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=34.4
Q ss_pred CCChhHHHHHHhhhhhhc-cCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 31 ARDPDIRRWAAEGLAYLT-LDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLT-lDAdVKE~lveD~~aL~al~~laks 73 (75)
..+.++|..|+..|..|+ -+.+.++.+++ ...+..|+++-++
T Consensus 97 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~ 139 (252)
T 4hxt_A 97 STDSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTS 139 (252)
T ss_dssp CSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcC
Confidence 357899999999999999 78899988876 4677888777654
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=72.46 E-value=3.9 Score=30.01 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=34.3
Q ss_pred CCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHh
Q psy14465 31 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVA 71 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~la 71 (75)
+.++++++.|+.-|..|+.+.+.|+.+++ .++..|+++-
T Consensus 98 ~~~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll 136 (457)
T 1xm9_A 98 TGNAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRV 136 (457)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHH
Confidence 45789999999999999999999998886 8888888775
No 8
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=70.82 E-value=14 Score=22.85 Aligned_cols=41 Identities=27% Similarity=0.216 Sum_probs=33.2
Q ss_pred CChhHHHHHHhhhhhhccC-HHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 32 RDPDIRRWAAEGLAYLTLD-AEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 32 ~d~d~rrWA~EGLAYLTlD-AdVKE~lveD~~aL~al~~laks 73 (75)
.+.++|+.|+..|..|+.+ .+.++.+++. .++..|+++.++
T Consensus 150 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~ 191 (210)
T 4db6_A 150 PNEQILQEALWALSNIASGGNEQKQAVKEA-GALEKLEQLQSH 191 (210)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHHHcCCcHHHHHHHHC-CCHHHHHHHHhC
Confidence 4789999999999999988 7777766654 578888877654
No 9
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=70.24 E-value=8.4 Score=23.91 Aligned_cols=42 Identities=31% Similarity=0.277 Sum_probs=32.1
Q ss_pred CCChhHHHHHHhhhhhhc-cCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 31 ARDPDIRRWAAEGLAYLT-LDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLT-lDAdVKE~lveD~~aL~al~~laks 73 (75)
+.+.++|.-|+..|++|+ -+.+.++.+++- .++..|+++-++
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~ 65 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSS 65 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcC
Confidence 468899999999999999 677777766654 567777766543
No 10
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=68.75 E-value=15 Score=27.66 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=43.9
Q ss_pred cCcchHHHHHHHHhhhhcCCCCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 11 FADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 11 faegst~kLak~cRk~L~n~~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~laks 73 (75)
++.|..-.|.+..+ ..++.+|.-|++-|..|+-+.+.+..+++.+..+..|+++-++
T Consensus 11 ~~~g~i~~Lv~lL~------~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~ 67 (644)
T 2z6h_A 11 LATRAIPELTKLLN------DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 67 (644)
T ss_dssp -CTTTHHHHHHHHT------CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS
T ss_pred hhhchHHHHHHHHc------CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc
Confidence 45566656665433 3688999999999999999999999888888888888876543
No 11
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=67.12 E-value=8.1 Score=23.10 Aligned_cols=17 Identities=29% Similarity=0.077 Sum_probs=11.1
Q ss_pred CChhHHHHHHhhhhhhc
Q psy14465 32 RDPDIRRWAAEGLAYLT 48 (75)
Q Consensus 32 ~d~d~rrWA~EGLAYLT 48 (75)
.++.+|.+|++.|+.+.
T Consensus 54 ~~~~vR~~A~~aL~~~~ 70 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQ 70 (131)
T ss_dssp SCHHHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 45667777777776654
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=65.92 E-value=8.2 Score=29.12 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=36.0
Q ss_pred CCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 31 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~laks 73 (75)
+.+.++|+.|+.-|..|+.+.+.++.+++. ..+..|+++.++
T Consensus 68 ~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~ 109 (644)
T 2z6h_A 68 TNDVETARCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGS 109 (644)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHHHHHHHHTT-THHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhcChhhHHHHHHc-CCHHHHHHHHhC
Confidence 358899999999999999999999988876 788888887654
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=63.02 E-value=6.2 Score=29.17 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=34.0
Q ss_pred CCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 31 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~laks 73 (75)
..+.+++.+|+..|+||+-+.+-+-..+.+...+..|+++-++
T Consensus 243 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 285 (510)
T 3ul1_B 243 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285 (510)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC
Confidence 4678999999999999998877666666677777777776554
No 14
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=62.75 E-value=6.4 Score=31.17 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=35.8
Q ss_pred CChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 32 RDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 32 ~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~laks 73 (75)
.+.++|+.|+..|..|+.+.+.++.+++. .++..|+++.++
T Consensus 205 ~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~-g~I~~Lv~lL~~ 245 (780)
T 2z6g_A 205 NDVETARCTSGTLHNLSHHREGLLAIFKS-GGIPALVNMLGS 245 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHHHHT-THHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhCCchhHHHHHHc-CCHHHHHHHHcC
Confidence 48899999999999999999998888765 788888888765
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=60.76 E-value=15 Score=22.91 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=31.3
Q ss_pred CChhHHHHHHhhhhhhcc-CHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 32 RDPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 32 ~d~d~rrWA~EGLAYLTl-DAdVKE~lveD~~aL~al~~laks 73 (75)
.+.++|+.|+..|..|+. +.+.++.+++ ...+..|+++-++
T Consensus 140 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~ 181 (252)
T 4hxt_A 140 TDSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTS 181 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CcCHHHHHHHHCC
Confidence 568999999999999998 4555565554 6678888777654
No 16
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=59.77 E-value=18 Score=28.59 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=37.5
Q ss_pred CCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 31 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~laks 73 (75)
..++.+|+-|++-|.+|+.+.+.+..+++.+..+..|+++-++
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~ 203 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 203 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC
Confidence 4588999999999999999999999888888899988877653
No 17
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=59.55 E-value=13 Score=23.67 Aligned_cols=49 Identities=31% Similarity=0.289 Sum_probs=33.5
Q ss_pred HHhhhhcCCCCChhHHHHHHhhhhhhcc-CHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 22 ACRRFLVNPARDPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 22 ~cRk~L~n~~~d~d~rrWA~EGLAYLTl-DAdVKE~lveD~~aL~al~~laks 73 (75)
..-++|-+ .+.++|+.|+..|..|+. +.+.++.+++ ..++..|+++-++
T Consensus 142 ~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~ 191 (252)
T 4db8_A 142 ALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSS 191 (252)
T ss_dssp HHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHGGGC
T ss_pred HHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHCC
Confidence 33444433 478999999999999998 4555555543 5677777776554
No 18
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=58.53 E-value=7.5 Score=28.71 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=33.0
Q ss_pred CCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 31 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~laks 73 (75)
..+++++.+|+-.|+||+-+.+-+-.++.+...+..|+++-++
T Consensus 262 ~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~ 304 (529)
T 3tpo_A 262 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 304 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC
Confidence 4678999999999999998776666666666677777766543
No 19
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.49 E-value=6.1 Score=25.73 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=39.8
Q ss_pred chHHHHHHHHhhhhcCCCCChhHHHHHHhhhhhhccCHHHHHHh--hcCHHHHHHHHHH
Q psy14465 14 GSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEAL--IEDKPALAALVDV 70 (75)
Q Consensus 14 gst~kLak~cRk~L~n~~~d~d~rrWA~EGLAYLTlDAdVKE~l--veD~~aL~al~~l 70 (75)
+.|-+..+.+|-|+++ .|-..---|||.. +|...| ..|..++.+++++
T Consensus 44 ~ktpe~Yl~iRN~iI~--------~yr~np~~yLT~t-~~rr~L~~~gDv~~i~RVh~F 93 (111)
T 2dce_A 44 AKTPERYLKIRNYILD--------QWEICKPKYLNKT-SVRPGLKNCGDVNCIGRIHTY 93 (111)
T ss_dssp SCCHHHHHHHHHHHHH--------HHHHHTTSCCCGG-GTTTTTSSSSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH--------HHHhCCcceeeHH-HHHHhcccccCHHHHHHHHHH
Confidence 4588999999999985 7877778899997 566667 5899999999875
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=53.66 E-value=19 Score=22.86 Aligned_cols=42 Identities=26% Similarity=0.205 Sum_probs=32.8
Q ss_pred CChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 32 RDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 32 ~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~laks 73 (75)
.++++|+-|+..|..|+.+.+.+...+-+...+..|+++-++
T Consensus 108 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 149 (252)
T 4db8_A 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC
Confidence 478999999999999999999883344456677777776554
No 21
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=51.00 E-value=17 Score=25.92 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=33.3
Q ss_pred CChhHHHHHHhhhhhhcc-CHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 32 RDPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 32 ~d~d~rrWA~EGLAYLTl-DAdVKE~lveD~~aL~al~~laks 73 (75)
.+..++++|+--|+||+- +++.++.+++ ..+++.|+++-++
T Consensus 179 ~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g~i~~Lv~LL~~ 220 (296)
T 1xqr_A 179 QVQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMVQQLVALVRT 220 (296)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHhCChHHHHHHHH-cCCHHHHHHHHcC
Confidence 588999999999999976 5788888875 4678888887654
No 22
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=47.66 E-value=33 Score=24.34 Aligned_cols=42 Identities=21% Similarity=0.202 Sum_probs=33.6
Q ss_pred CCChhHHHHHHhhhhhhcc-CHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 31 ARDPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTl-DAdVKE~lveD~~aL~al~~laks 73 (75)
+.++++|.+|+.-|+.+.- ++..++.+++. .++..|+.+-++
T Consensus 93 s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~-g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 93 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL-GALRKLLRLLDR 135 (296)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC-CCHHHHHHHHcc
Confidence 4678999999999999965 57788887765 678888877664
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=41.43 E-value=44 Score=23.97 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=29.8
Q ss_pred ChhHHHHHHhhhhhhccC-HHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 33 DPDIRRWAAEGLAYLTLD-AEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 33 d~d~rrWA~EGLAYLTlD-AdVKE~lveD~~aL~al~~laks 73 (75)
++++|..|+..|..|+-+ .+.+..+++- .++..|+.+-++
T Consensus 131 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~ 171 (528)
T 4b8j_A 131 FPQLQFEAAWALTNIASGTSENTKVVIDH-GAVPIFVKLLGS 171 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHhC-CcHHHHHHHhcC
Confidence 489999999999999987 6777666543 566667666543
No 24
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=40.34 E-value=27 Score=26.62 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=31.8
Q ss_pred CCChhHHHHHHhhhhhhcc--CHHHHHHhhcCHHHHHHHHHH
Q psy14465 31 ARDPDIRRWAAEGLAYLTL--DAEVKEALIEDKPALAALVDV 70 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTl--DAdVKE~lveD~~aL~al~~l 70 (75)
+.+.+++..|+--|.+|+. |.+.|+.++ +..++..|+++
T Consensus 254 s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~-~~GaI~~LV~l 294 (458)
T 3nmz_A 254 SESEDLQQVIASVLRNLSWRADVNSKKTLR-EVGSVKALMEC 294 (458)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCCHHHHHHHH-HTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHHHHHH-HcCCHHHHHHH
Confidence 4678999999999999998 478888877 45678888775
No 25
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=38.41 E-value=70 Score=19.81 Aligned_cols=16 Identities=31% Similarity=0.073 Sum_probs=9.3
Q ss_pred CChhHHHHHHhhhhhh
Q psy14465 32 RDPDIRRWAAEGLAYL 47 (75)
Q Consensus 32 ~d~d~rrWA~EGLAYL 47 (75)
.++.+|..|++.|+.+
T Consensus 124 ~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEI 139 (211)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 4555666666666555
No 26
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=37.99 E-value=54 Score=20.17 Aligned_cols=18 Identities=28% Similarity=0.039 Sum_probs=12.5
Q ss_pred CCChhHHHHHHhhhhhhc
Q psy14465 31 ARDPDIRRWAAEGLAYLT 48 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLT 48 (75)
..++.+|.+|++.|+.+.
T Consensus 118 d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp CSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 346677777777777764
No 27
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=37.94 E-value=52 Score=21.41 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=7.1
Q ss_pred ChhHHHHHHhhhhhh
Q psy14465 33 DPDIRRWAAEGLAYL 47 (75)
Q Consensus 33 d~d~rrWA~EGLAYL 47 (75)
++++|.+|+++|+.+
T Consensus 172 ~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 172 NGDVRNWAAFAININ 186 (280)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 334455555555444
No 28
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Probab=35.13 E-value=15 Score=30.27 Aligned_cols=15 Identities=27% Similarity=0.833 Sum_probs=12.7
Q ss_pred CCChhHHHHHHhhhh
Q psy14465 31 ARDPDIRRWAAEGLA 45 (75)
Q Consensus 31 ~~d~d~rrWA~EGLA 45 (75)
..+.++.+|+||||.
T Consensus 313 ~~d~~~l~W~i~gLk 327 (543)
T 2v8i_A 313 PQGQDLLKWTVDGLK 327 (543)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 367899999999983
No 29
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=33.77 E-value=45 Score=27.71 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=37.9
Q ss_pred CCChhHHHHHHhhhhhhcc-CHHHHHHhhcCHHHHHHHHHHhhcc
Q psy14465 31 ARDPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASSD 74 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTl-DAdVKE~lveD~~aL~al~~laks~ 74 (75)
..+.++|+=|+=.|++||- +.+....++++...+..|++|.+++
T Consensus 676 s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~ 720 (810)
T 3now_A 676 DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP 720 (810)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC
Confidence 3678999999999999998 7888888888788999999887753
No 30
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=31.52 E-value=59 Score=23.67 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=34.6
Q ss_pred CChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 32 RDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 32 ~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~laks 73 (75)
.+.++.+-|+--|.+|+-+++.++.+++-+.++..|+.+-++
T Consensus 155 ~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 467788899999999999999999888755788888877653
No 31
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=31.51 E-value=58 Score=23.61 Aligned_cols=41 Identities=32% Similarity=0.345 Sum_probs=34.0
Q ss_pred ChhHHHHHHhhhhhhccCH-HHHHHhhcCHHHHHHHHHHhhc
Q psy14465 33 DPDIRRWAAEGLAYLTLDA-EVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 33 d~d~rrWA~EGLAYLTlDA-dVKE~lveD~~aL~al~~laks 73 (75)
++++++.|+.-|.-|+.+. +.|..+++...++..|+++-++
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s 138 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS 138 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC
Confidence 4678999999999999754 5898888888889999988765
No 32
>2vy1_A Protein leafy, leafy; DNA-binding, polymorphism, transcription; 2.10A {Arabidopsis thaliana} PDB: 2vy2_A
Probab=30.10 E-value=18 Score=26.04 Aligned_cols=13 Identities=46% Similarity=0.838 Sum_probs=11.2
Q ss_pred HHHHHHHhhhhcC
Q psy14465 17 RKLAEACRRFLVN 29 (75)
Q Consensus 17 ~kLak~cRk~L~n 29 (75)
..|.+|||.||+.
T Consensus 31 FhLYeqC~~fL~q 43 (194)
T 2vy1_A 31 FHLYEQCREFLLQ 43 (194)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4799999999974
No 33
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=29.62 E-value=43 Score=24.29 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=35.3
Q ss_pred CChhHHHHHHhhhhhhcc-CHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 32 RDPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 32 ~d~d~rrWA~EGLAYLTl-DAdVKE~lveD~~aL~al~~laks 73 (75)
.+.++++-|+--|.-|+. +.+.|..++.+..+|..|.++-++
T Consensus 183 ~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~ 225 (354)
T 3nmw_A 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 225 (354)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhcc
Confidence 467888989989999988 778899998888889988887654
No 34
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=29.34 E-value=1.2e+02 Score=20.67 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=27.1
Q ss_pred CChhHHHHHHhhhhhhccC-HHHHHHhhcCHHHHHHHHHHhh
Q psy14465 32 RDPDIRRWAAEGLAYLTLD-AEVKEALIEDKPALAALVDVAS 72 (75)
Q Consensus 32 ~d~d~rrWA~EGLAYLTlD-AdVKE~lveD~~aL~al~~lak 72 (75)
.+.++|.-|+..|.||+-+ .+.++.+++ ...+..|+++-+
T Consensus 204 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~ 244 (450)
T 2jdq_A 204 SDTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLM 244 (450)
T ss_dssp CCHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHC
Confidence 5789999999999999975 455554443 345555555543
No 35
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=28.98 E-value=15 Score=26.81 Aligned_cols=20 Identities=65% Similarity=0.654 Sum_probs=15.7
Q ss_pred Hhhhhhh----ccCHHHHHHhhcC
Q psy14465 41 AEGLAYL----TLDAEVKEALIED 60 (75)
Q Consensus 41 ~EGLAYL----TlDAdVKE~lveD 60 (75)
.||++|| .+|..++.+|-||
T Consensus 5 ~~~~~~~~~~~~~~~~i~~~l~ED 28 (299)
T 2jbm_A 5 AEGLALLLPPVTLAALVDSWLRED 28 (299)
T ss_dssp GGGGGGGSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhcChhhHHHHHHHHHHhh
Confidence 5899997 3577888888877
No 36
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=28.29 E-value=67 Score=24.39 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=36.2
Q ss_pred CCChhHHHHHHhhhhhhcc-CHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 31 ARDPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTl-DAdVKE~lveD~~aL~al~~laks 73 (75)
..+.++++-|+--|.-|+. +.+.|..++.+..+|..|.++-++
T Consensus 298 s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 298 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 3477899999999999998 889999999888889988887653
No 37
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=27.87 E-value=64 Score=20.66 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=5.3
Q ss_pred HHhhcCHH
Q psy14465 55 EALIEDKP 62 (75)
Q Consensus 55 E~lveD~~ 62 (75)
|++.+||+
T Consensus 62 DeISnDPN 69 (89)
T 2qsb_A 62 DEMANDPN 69 (89)
T ss_dssp HHHHTCTT
T ss_pred HHhhcCCC
Confidence 66777764
No 38
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=26.36 E-value=52 Score=26.18 Aligned_cols=51 Identities=27% Similarity=0.330 Sum_probs=38.5
Q ss_pred chHHHHHHHHhhhhcCCCCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHh
Q psy14465 14 GSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVA 71 (75)
Q Consensus 14 gst~kLak~cRk~L~n~~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~la 71 (75)
|..-.|.+.+++ ..+.++++-|+--|..|+.+.+.|..+++ .+|..|+++-
T Consensus 133 GaIp~LV~LL~s-----~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL 183 (584)
T 3l6x_A 133 DGVPALVRLLRK-----ARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEV 183 (584)
T ss_dssp THHHHHHHHHHH-----CCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHT
T ss_pred CCHHHHHHHHcC-----CCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHH
Confidence 444445554442 35678899999999999999999999994 5788888864
No 39
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=26.24 E-value=85 Score=21.78 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=37.7
Q ss_pred cchHHHHHHHHhhhhcCCCCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHH
Q psy14465 13 DGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVD 69 (75)
Q Consensus 13 egst~kLak~cRk~L~n~~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~ 69 (75)
.|..-.|.+.+++ +.+.++++-|+--|-.|+...+.|..+++ .++..|.+
T Consensus 93 ~GaI~~Lv~lL~~-----~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ 142 (233)
T 3tt9_A 93 LNGVPRLLQVLKQ-----TRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTE 142 (233)
T ss_dssp TTHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCC
T ss_pred cCCHHHHHHHHcc-----CCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHH
Confidence 3445555555443 35789999999999999999999999986 36777765
No 40
>3v2d_U 50S ribosomal protein L20; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ...
Probab=25.18 E-value=43 Score=22.22 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=21.4
Q ss_pred hccCHHHHHHh-hcCHHHHHHHHHHhhccC
Q psy14465 47 LTLDAEVKEAL-IEDKPALAALVDVASSDL 75 (75)
Q Consensus 47 LTlDAdVKE~l-veD~~aL~al~~laks~~ 75 (75)
+.||--|--+| |.||++.++|++.||..|
T Consensus 88 i~LNRK~La~lAi~dp~~F~~lv~~ak~~~ 117 (118)
T 3v2d_U 88 IEVDRKNLADLAVREPQVFAELVERAKAAQ 117 (118)
T ss_dssp CCCCHHHHHHHHHHCHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence 34555554444 579999999999999765
No 41
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=24.93 E-value=45 Score=23.93 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=28.5
Q ss_pred CCChhHHHHHHhhhhhhccCHHHHHHhhcCHHHHHHHHHHhh
Q psy14465 31 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVAS 72 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTlDAdVKE~lveD~~aL~al~~lak 72 (75)
..+.+++..|+..|+||+-..+-+-..+-+...+..|+.+-+
T Consensus 255 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc
Confidence 357899999999999999776554333334455666665543
No 42
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=24.68 E-value=1.1e+02 Score=21.19 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=34.9
Q ss_pred CChhHHHHHHhhhhhhcc-CHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 32 RDPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 32 ~d~d~rrWA~EGLAYLTl-DAdVKE~lveD~~aL~al~~laks 73 (75)
.+.+++.=|+-=|..|+. |++.+..+.+-+..+.+|+.+-++
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRG 205 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHh
Confidence 467888999999999987 889999998877778888877654
No 43
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=24.28 E-value=73 Score=23.40 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=29.9
Q ss_pred CCChhHHHHHHhhhhhhcc-CHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 31 ARDPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTl-DAdVKE~lveD~~aL~al~~laks 73 (75)
..+.++|+.|+-.|+.|+- +.+.+..++ +...+..|+++-++
T Consensus 327 ~~~~~v~~~A~~aL~nl~a~~~~~~~~v~-~~g~i~~Lv~lL~~ 369 (510)
T 3ul1_B 327 NPKTNIQKEATWTMSNITAGRQDQIQQVV-NHGLVPFLVGVLSK 369 (510)
T ss_dssp CSSHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHcCcHHHHHHHH-hcCCHHHHHHHHcC
Confidence 4577899999999999987 455555444 44677777776554
No 44
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=24.00 E-value=29 Score=25.33 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=17.5
Q ss_pred CCCChhHHHHHHh----------hhhhhccCHHHHHH
Q psy14465 30 PARDPDIRRWAAE----------GLAYLTLDAEVKEA 56 (75)
Q Consensus 30 ~~~d~d~rrWA~E----------GLAYLTlDAdVKE~ 56 (75)
+....|+||||.| =|. .+.|..|--+
T Consensus 45 ~~~~Ke~rk~~~Ei~stFL~~~ApL~-v~v~e~i~~e 80 (211)
T 1iap_A 45 SLGPKEAKKAFLDFYHSFLEKTAVLR-VPVPPNVAFE 80 (211)
T ss_dssp TSCHHHHHHHHHHHHHHHTSTTCTTC-CCCCHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHhCCCCCcc-ccCCHHHHHH
Confidence 3468899999999 444 3555555444
No 45
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=23.88 E-value=67 Score=23.58 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=27.0
Q ss_pred CChhHHHHHHhhhhhhcc-CHHHHHHhhcCHHHHHHHHHHhhc
Q psy14465 32 RDPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 32 ~d~d~rrWA~EGLAYLTl-DAdVKE~lveD~~aL~al~~laks 73 (75)
.+++++..|+--|.+|+- +.+.+..+++ ..++..|+.+-++
T Consensus 132 ~~~~~q~~Aa~aL~nia~~~~~~~~~vv~-~Gaip~Lv~LL~s 173 (529)
T 3tpo_A 132 DCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLAS 173 (529)
T ss_dssp TCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcC
Confidence 346788999999999865 4555555543 4566666665544
No 46
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=23.82 E-value=77 Score=20.47 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=18.9
Q ss_pred CCCChhHHHHHHhhhhhhc---cCHHHH--------HHhhcCHH
Q psy14465 30 PARDPDIRRWAAEGLAYLT---LDAEVK--------EALIEDKP 62 (75)
Q Consensus 30 ~~~d~d~rrWA~EGLAYLT---lDAdVK--------E~lveD~~ 62 (75)
++-+..+||=|-|-...|. ....|+ |++.+||+
T Consensus 30 ~sVPRNIRraA~ea~~~L~~e~~~~~vRAAtAIs~LDeISnDPN 73 (94)
T 2qzg_A 30 TTVPRNIRAAADNAKNALHNEEQELIVRSATAIQYLDDISEDPN 73 (94)
T ss_dssp TTSCHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred CCCChHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhhcCCC
Confidence 4566667777766666663 233333 56666664
No 47
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=22.36 E-value=1e+02 Score=20.96 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=28.9
Q ss_pred CCChhHHHHHHhhhhhhccCHH-HHHHhhcCHHHHHHHHHHhhc
Q psy14465 31 ARDPDIRRWAAEGLAYLTLDAE-VKEALIEDKPALAALVDVASS 73 (75)
Q Consensus 31 ~~d~d~rrWA~EGLAYLTlDAd-VKE~lveD~~aL~al~~laks 73 (75)
..+.++|.-|+..|.+|+-..+ ..+.++ +...+..|+++.++
T Consensus 245 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 245 HNDYKVVSPALRAVGNIVTGDDIQTQVIL-NCSALQSLLHLLSS 287 (450)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHTTC
T ss_pred CCchhHHHHHHHHHHHHhhCChHHHHHHH-HCccHHHHHHHHcC
Confidence 3578899999999999987644 344333 44577777766543
No 48
>3r8s_Q 50S ribosomal protein L20; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q* 2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ...
Probab=20.60 E-value=36 Score=22.56 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=20.3
Q ss_pred hccCHHHHHH-hhcCHHHHHHHHHHhhcc
Q psy14465 47 LTLDAEVKEA-LIEDKPALAALVDVASSD 74 (75)
Q Consensus 47 LTlDAdVKE~-lveD~~aL~al~~laks~ 74 (75)
+.||--|--+ -|.||.+.++|+++||..
T Consensus 87 i~LNRK~La~lAi~dp~~F~~lv~~ak~~ 115 (117)
T 3r8s_Q 87 VEIDRKILADIAVFDKVAFTALVEKAKAA 115 (117)
T ss_dssp CCCCHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 3455544433 368999999999999975
No 49
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=20.10 E-value=50 Score=22.07 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=23.6
Q ss_pred hHHHHHHHHhhhhcC-------CCCChhH---HHHHHhhhhhhccCHH
Q psy14465 15 STRKLAEACRRFLVN-------PARDPDI---RRWAAEGLAYLTLDAE 52 (75)
Q Consensus 15 st~kLak~cRk~L~n-------~~~d~d~---rrWA~EGLAYLTlDAd 52 (75)
.+++-++.||+||-+ ....+++ -|==|.+|-+-++.++
T Consensus 14 e~~~nvkKck~FL~tLi~las~~~~spev~~~Vr~LVq~Ll~~~i~~E 61 (114)
T 2p6v_A 14 ETMENVXXCXNFLSTLIXLASSGXQSTETAANVXELVQNLLDGXIEAE 61 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHccCCHH
Confidence 577889999999964 1233332 1344566666666664
Done!