RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14465
         (75 letters)



>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase,
           MSMEG_0569 family.  Members of this protein family
           belong to a conserved seven-gene biosynthetic cluster
           found sparsely in Cyanobacteria, Proteobacteria, and
           Actinobacteria. Distant homologies to characterized
           proteins suggest that members are enzymes dependent on a
           flavinoid cofactor.
          Length = 400

 Score = 26.1 bits (58), Expect = 1.5
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 32  RDPDIRRWAAEGLA-YLTLDAEVKEALIEDKPALAALVDVASS 73
           RD D+RR+A EG+  Y  L+ +++E  +   P L A +D A +
Sbjct: 244 RDIDLRRFALEGMQLYGRLE-DIREGQLRFAPDLKANLDGADA 285


>gnl|CDD|218911 pfam06147, DUF968, Protein of unknown function (DUF968).  Family of
           uncharacterized prophage proteins that are also found in
           bacteria and eukaryotes.
          Length = 200

 Score = 25.7 bits (57), Expect = 2.2
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 2   GGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDA 51
           G  ++ I      +TR  AE     +++   DPDI       L+Y T   
Sbjct: 69  GYGESDISLSDVPATRSQAEELIEPVLDLVVDPDI------PLSYKTKPK 112


>gnl|CDD|234580 PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.
          Length = 380

 Score = 24.7 bits (55), Expect = 5.5
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 27  LVNPARDPDIRRWAAE--GLAYLTLDAEVKEALIEDKPALAA 66
           LVNP R   I    AE  GL    LD + +EA+     ALAA
Sbjct: 227 LVNPKRREQIEEALAEYAGLEVTLLDGQKREAMAAADAALAA 268


>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit
           alpha; Validated.
          Length = 858

 Score = 24.8 bits (54), Expect = 5.7
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 25  RFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIE 59
           R+L+    D  I+R   E L +  L +EV+EA+ +
Sbjct: 293 RYLLENTEDEQIKRLVKEKLKFTPL-SEVEEAMYQ 326


>gnl|CDD|170047 PRK09687, PRK09687, putative lyase; Provisional.
          Length = 280

 Score = 24.3 bits (53), Expect = 7.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 27  LVNPARDP--DIRRWAAEGLAYLTLDA-EVKEALIE 59
           L+N  +DP  D+R WAA  L     D  +++EA + 
Sbjct: 164 LINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVA 199


>gnl|CDD|146808 pfam04361, DUF494, Protein of unknown function (DUF494).  Members
          of this family of uncharacterized proteins are often
          named Smg.
          Length = 155

 Score = 23.7 bits (52), Expect = 9.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 4  SDASIRPFADGSTRKLAEACRRFL 27
          SD+SIR + D    KL   CR FL
Sbjct: 64 SDSSIRIYTDEEQEKLDTECRGFL 87


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,024,553
Number of extensions: 333281
Number of successful extensions: 454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 26
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)