RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14465
(75 letters)
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 66.0 bits (160), Expect = 1e-14
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 7 SIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAA 66
S + ++L+E + R + E LAYL+L A VK + ++
Sbjct: 323 SFTKLTCINLKQLSEIFINAISR--RIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEI 380
Query: 67 LVDVASS 73
L+ + S
Sbjct: 381 LLTMIKS 387
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 65.3 bits (158), Expect = 2e-14
Identities = 50/73 (68%), Positives = 59/73 (80%)
Query: 2 GGSDASIRPFADGSTRKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDK 61
GG DA+IRPF DG+ KLAEACRRFL+ P +D DIRRWAA+GLAYLTLDAE KE LIEDK
Sbjct: 361 GGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDK 420
Query: 62 PALAALVDVASSD 74
++ AL+D+A
Sbjct: 421 ASIHALMDLARGG 433
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.060
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 5 DASIRPFADGSTRKLA 20
AS++ +AD S LA
Sbjct: 26 QASLKLYADDSAPALA 41
Score = 25.7 bits (55), Expect = 1.4
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 49 LDAEVKEALIEDKPALA--ALVD 69
L A +K + PALA A ++
Sbjct: 25 LQASLKLYADDSAPALAIKATME 47
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 28.8 bits (64), Expect = 0.14
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
DP++ + ++YLT + ++ K + LV + +
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 286
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 28.0 bits (63), Expect = 0.23
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
+ I + A L+ + ++ +++ AL L + S +
Sbjct: 151 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 192
Score = 25.3 bits (56), Expect = 1.9
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
D + A L+ + + + D AL ALV + SS
Sbjct: 25 DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP 66
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 27.3 bits (61), Expect = 0.36
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
+ I + A L+ + ++ +++ AL L + S +
Sbjct: 193 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 234
Score = 24.9 bits (55), Expect = 2.4
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
+ I + A L+ + + + D AL ALV + SS
Sbjct: 151 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 192
Score = 24.2 bits (53), Expect = 5.1
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
D + A + + D + + D AL ALV + SS
Sbjct: 25 DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP 66
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 27.2 bits (60), Expect = 0.40
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
D D+ A L+YL+ K + D LV++ +
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN 246
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 27.3 bits (60), Expect = 0.41
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
D + AA + L+ + A++ ++A+V +
Sbjct: 163 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 204
Score = 26.1 bits (57), Expect = 0.93
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
+ A L L L E + + L +V + +
Sbjct: 247 VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 288
Score = 25.4 bits (55), Expect = 2.0
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASS 73
+ + L L + + +I ALV++ +
Sbjct: 289 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 329
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex,
transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1
PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A
1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A
1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 26.7 bits (59), Expect = 0.71
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
D + AA + L+ + A++ ++A+V +
Sbjct: 30 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 71
Score = 24.7 bits (54), Expect = 3.2
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
+ +A L L L E + + L +V + +
Sbjct: 114 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 155
Score = 23.6 bits (51), Expect = 7.8
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
+ + L L + + +I ALV++ +
Sbjct: 156 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 197
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 26.1 bits (57), Expect = 1.2
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
D + AA + L+ + A++ ++A+V +
Sbjct: 27 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 68
Score = 25.3 bits (55), Expect = 1.9
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
+ +A L L L E + + L +V + +
Sbjct: 111 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 25.7 bits (56), Expect = 1.2
Identities = 5/50 (10%), Positives = 11/50 (22%)
Query: 25 RFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
L P AA + + + + L+ +
Sbjct: 15 SMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural
genomics, PSI, protein struct initiative; 1.80A
{Archaeoglobus fulgidus} SCOP: c.87.1.8
Length = 177
Score = 25.6 bits (57), Expect = 1.6
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 11 FADGSTRKLAEACRRFLVNPAR-DPDIRRWAAE 42
+ ++ +A ++ NP + D R A E
Sbjct: 144 LVNADVNEIIDAMKKVSKNPDKFKKDCFRRAKE 176
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 25.0 bits (54), Expect = 2.9
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
D + A ++YL+ + + D LV++ S +
Sbjct: 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 311
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 24.9 bits (54), Expect = 3.3
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSDL 75
D ++++ A E A ++ AL+E P + + S++
Sbjct: 561 DVELQQRAVEYNALFKKYDHMRSALLERMPVMEKVTTNGPSEI 603
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 24.4 bits (52), Expect = 3.9
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 31 ARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
++D + A + + E + + + LVD+ S
Sbjct: 13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP 56
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 24.5 bits (53), Expect = 4.3
Identities = 6/21 (28%), Positives = 7/21 (33%), Gaps = 3/21 (14%)
Query: 24 RRFLVNPARDPDIRRWAAEGL 44
FL P + W A L
Sbjct: 2150 PSFLSKPE---ERLNWHANSL 2167
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 24.5 bits (52), Expect = 4.4
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 33 DPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSD 74
++ AA L +L + + + + LV +
Sbjct: 61 LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP 102
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P
structure initiative, nysgxrc; 2.16A {Enterococcus
faecalis} SCOP: a.118.26.1 d.37.1.1
Length = 286
Score = 24.1 bits (53), Expect = 4.7
Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 40 AAEGLAYLTLDAEVKEALIE--DKPALAALVDVASSD 74
A+ + D E + + A ++ +D
Sbjct: 63 LADMFDVIEEDNENMKDYLAEMRPSYAADMLAEMYTD 99
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 24.1 bits (52), Expect = 5.4
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 8/59 (13%)
Query: 17 RKLAEACRRFLVNPARDPDIRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSDL 75
R C I+ + L A +E D + L+ D+
Sbjct: 195 RPFDRVCLDIQFRRPDANSIK-------SRLMTIAI-REKFKLDPNVIDRLIQTTRGDI 245
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 23.7 bits (51), Expect = 8.4
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 27/91 (29%)
Query: 2 GGSDASIRPFADG-------STRKL--------AEACRRFLVNPARDPDIRRW---AAEG 43
GG D + S AE R R A+G
Sbjct: 1131 GGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPA--------TTTRNGFMEAQG 1182
Query: 44 LAYLTLDAEVKEALIEDKPALAALVDVASSD 74
+ + AL P + A++
Sbjct: 1183 AGIQII-MQADLALKMGVPIYGIVAMAATAT 1212
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 23.6 bits (50), Expect = 8.4
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 6/40 (15%)
Query: 36 IRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDVASSDL 75
IR+W E ++E K + A DL
Sbjct: 87 IRKWREE------QRKRLQELDAASKVMEQEWREKAKKDL 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.382
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,238,582
Number of extensions: 67763
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 67
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)