RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14465
         (75 letters)



>d2izpa1 a.250.1.1 (A:1035-1301) Putative membrane antigen BipD
           {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 267

 Score = 24.8 bits (54), Expect = 0.97
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 36  IRRWAAEGLAYLTLDAEVKEALIEDKPALAALVDV 70
           + R   E L   TLD    E  I+  P L  LVDV
Sbjct: 69  LERLETELLGG-TLDTAGDEGGIQPDPILQGLVDV 102


>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 457

 Score = 24.8 bits (52), Expect = 1.4
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 33 DPDIRRWAAEGLAYLTL-DAEVKEALIEDKPALAALVDVASSD 74
          D   +   A  + +    D   K+ + +    +  LVD+  S 
Sbjct: 15 DEKYQAIGAYYIQHTCFQDESAKQQVYQLG-GICKLVDLLRSP 56


>d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha,
          eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 94

 Score = 23.6 bits (51), Expect = 2.3
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 7/30 (23%)

Query: 31 ARDPDIRRWAAEGLAYLTLDAEVKEALIED 60
            DP I       L  L L+ + +E LI +
Sbjct: 68 VSDPSI-------LDSLDLNEDEREVLINN 90


>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS
          {Salmonella typhimurium [TaxId: 90371]}
          Length = 411

 Score = 22.8 bits (48), Expect = 5.6
 Identities = 5/26 (19%), Positives = 8/26 (30%)

Query: 17 RKLAEACRRFLVNPARDPDIRRWAAE 42
            L +   + +    RD     W A 
Sbjct: 71 YDLVDHGIKAMNGALRDKKYGGWYAC 96


>d1t4aa_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Bacillus
          subtilis [TaxId: 1423]}
          Length = 80

 Score = 21.8 bits (47), Expect = 8.4
 Identities = 4/14 (28%), Positives = 6/14 (42%)

Query: 17 RKLAEACRRFLVNP 30
            + E C + L N 
Sbjct: 56 VLVKEMCEKLLANT 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0619    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 279,739
Number of extensions: 11073
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 13
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)