Query psy14466
Match_columns 231
No_of_seqs 106 out of 206
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 20:34:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09139 Mmp37: Mitochondrial 100.0 2.1E-93 4.6E-98 656.6 20.8 208 19-230 2-217 (330)
2 KOG2986|consensus 100.0 2.1E-88 4.4E-93 605.7 17.8 213 14-230 8-221 (313)
3 cd05403 NT_KNTase_like Nucleot 82.4 4.8 0.0001 28.8 5.7 49 17-69 5-53 (93)
4 PRK13746 aminoglycoside resist 76.8 6.2 0.00014 36.0 5.8 49 18-69 15-63 (262)
5 PF01909 NTP_transf_2: Nucleot 73.4 5.1 0.00011 29.1 3.6 32 31-65 14-45 (93)
6 PF04439 Adenyl_transf: Strept 55.5 47 0.001 30.5 7.1 110 16-137 5-122 (282)
7 cd05397 NT_Pol-beta-like Nucle 49.1 52 0.0011 22.1 4.8 37 18-59 6-42 (49)
8 PF13728 TraF: F plasmid trans 40.5 44 0.00094 29.3 4.2 94 22-129 114-214 (215)
9 PF11394 DUF2875: Protein of u 34.8 26 0.00056 34.6 2.0 49 128-177 290-341 (451)
10 PF04229 GrpB: GrpB protein; 32.9 91 0.002 26.1 4.8 43 21-67 23-65 (167)
11 cd05402 NT_PAP_TUTase Nucleoti 29.5 1.7E+02 0.0036 22.1 5.4 43 16-63 6-48 (114)
12 COG1708 Predicted nucleotidylt 26.0 1.6E+02 0.0034 21.9 4.7 35 24-62 20-54 (128)
13 PF10100 DUF2338: Uncharacteri 25.3 27 0.00059 34.3 0.4 85 112-208 60-161 (429)
14 PF03445 DUF294: Putative nucl 24.7 2E+02 0.0043 23.3 5.4 56 29-97 46-102 (138)
15 COG0752 GlyQ Glycyl-tRNA synth 23.3 43 0.00092 31.1 1.2 28 202-229 69-102 (298)
16 COG3703 ChaC Uncharacterized p 20.7 66 0.0014 28.4 1.9 21 23-45 5-25 (190)
17 PF07913 DUF1678: Protein of u 20.5 75 0.0016 27.9 2.1 59 155-214 91-158 (201)
18 PHA03328 nuclear egress lamina 20.3 73 0.0016 30.2 2.2 22 178-199 279-300 (316)
No 1
>PF09139 Mmp37: Mitochondrial matrix Mmp37; InterPro: IPR015222 MMp37 is a mitochondrial matrix protein that functions in the translocation of proteins across the mitochondrial inner membrane [].
Probab=100.00 E-value=2.1e-93 Score=656.60 Aligned_cols=208 Identities=51% Similarity=0.883 Sum_probs=200.8
Q ss_pred HHHHHHhCCCCCeeEEEEecccccccCCC-------CCCCCceEEEEEeCCCchHHHHHhhcCccchhhHhhhccchhhh
Q psy14466 19 FQIILNQFPTEYVVHAFGYGSGVFQQANK-------SSIKSMVDIILVVNDSEKFHSENLIRNNNHYSFLKYFGPGVLKK 91 (231)
Q Consensus 19 ~~~il~~F~~~~v~~afaYGSgvf~Q~~~-------~~~~~miD~i~~V~d~~~wH~~Nl~~np~HYs~l~~lG~~~i~~ 91 (231)
+++|+++|| +||++|||||||||+|.|+ ..+++||||||+|+||.+||++||++||+|||+|++||++.|++
T Consensus 2 l~~il~~f~-~pi~~afAYGSGVf~Q~g~~~~~~~~~~~~~miD~I~~V~~~~~wH~~Nl~~np~HYs~l~~lG~~~i~~ 80 (330)
T PF09139_consen 2 LRRILSSFP-APIRYAFAYGSGVFPQAGYDAPTSSQKSKKPMIDFIFAVDDPQHWHSENLQQNPSHYSFLRYLGSRAISK 80 (330)
T ss_pred hHHHHHhCC-CCceEEEEecccccccCCCcccccccCCCCCceEEEEecCChHHHHHHHHHhChhhhhHHHhcChHHHHH
Confidence 789999999 8899999999999999999 34899999999999999999999999999999999999999999
Q ss_pred hhhhhCCceeeecceeCCCceeeEEEeeeeHHHHHHHhccccchhhccccccCceeeccCCHHHHHHHHHHHHHHHHHHH
Q psy14466 92 VQENYGSKMYFNTHIPMDDLNVTLKYGIINRQHFLSDLLDWQHLYVAGRLHKPVFTFHKLTNYELSAAIHLNLTSAVHAA 171 (231)
Q Consensus 92 ~q~~~gagVyyN~~V~~~~~~~~iKYGVis~~~l~~DL~~W~~lYlaGRl~KPV~~l~~~~~~~i~~a~~~Nl~sAl~~A 171 (231)
+|+++||||||||+|+++| ..|||||||++||++||.+|++||+||||||||+++ .+++++++.|++.||++|+++|
T Consensus 81 ~q~~~gagvyfN~~v~~~~--~~iKYGVis~~~l~~DL~~W~~lYlaGRl~KPV~~l-~~~~~~~~~a~~~Nl~sA~~~A 157 (330)
T PF09139_consen 81 VQERFGAGVYFNPFVPWNG--RLIKYGVISTDDLCRDLLNWNSLYLAGRLQKPVKIL-RNDDPRLRLANQYNLRSALRAA 157 (330)
T ss_pred HHhhcCCCeeeeccEEeCC--ceEEEEEeEHHHHHHHHHhcchhhhcccccCCeeec-cCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999998 3355599999999999999999
Q ss_pred HHcCCCCCCHHHHHHHHHccccCCCccc-CCCCChhhhhhhhhhcHHHHHHHhHHHhhhh
Q psy14466 172 LLLLPEHFSEYDLLSTITNLSYSGDFRM-TFGENKNKIDNIVQGQLEQFRLLYSPILDNI 230 (231)
Q Consensus 172 LllLP~~fte~~Ly~~I~~LSY~GD~Rm-~~gE~~~Kv~nIV~~~~~~f~~lY~p~l~~~ 230 (231)
||||||+|||+|||++||||||+||||| ++||||+||.|||++|+++||+||.|+|+++
T Consensus 158 LLlLPe~FtE~~Ly~~Ia~LSY~GD~RM~~~gEn~~KV~nIV~~q~~~Fr~LY~p~l~~~ 217 (330)
T PF09139_consen 158 LLLLPESFTEEDLYETIASLSYMGDFRMAIFGENPNKVRNIVSGQLDNFRELYSPLLQEL 217 (330)
T ss_pred HHhCCcccCHHHHHHHHhccccccccccccCccCHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999 6699999999999999999999999999876
No 2
>KOG2986|consensus
Probab=100.00 E-value=2.1e-88 Score=605.73 Aligned_cols=213 Identities=47% Similarity=0.851 Sum_probs=203.2
Q ss_pred CcHHHHHHHHHhCCCCCeeEEEEecccccccCCCCC-CCCceEEEEEeCCCchHHHHHhhcCccchhhHhhhccchhhhh
Q psy14466 14 TKHDFFQIILNQFPTEYVVHAFGYGSGVFQQANKSS-IKSMVDIILVVNDSEKFHSENLIRNNNHYSFLKYFGPGVLKKV 92 (231)
Q Consensus 14 ~~~~~~~~il~~F~~~~v~~afaYGSgvf~Q~~~~~-~~~miD~i~~V~d~~~wH~~Nl~~np~HYs~l~~lG~~~i~~~ 92 (231)
+..+.++.+++.|| +||++||+||||||+|+|++. +++||||||+|+||.+||+.||+|||+|||+|+.+||+.|+++
T Consensus 8 s~~~~~~~~ls~lp-~pv~~af~YGSgv~~Qag~s~~~~~MvDfI~~v~dpv~wHs~NlkqNp~HYS~lk~~Gpk~Is~i 86 (313)
T KOG2986|consen 8 SNKDEYRKKLSVLP-APVDFAFGYGSGVFRQAGSSQKSNKMVDFILGVTDPVKWHSINLKQNPQHYSFLKLFGPKFISKI 86 (313)
T ss_pred hhHHHHHHHHhcCC-CceeEEEEeccchhhccccccccCcceeEEEecCchHHHHHhhhhcChHHHHHHHHhChHHHHHH
Confidence 35678999999999 999999999999999998654 8899999999999999999999999999999999999999999
Q ss_pred hhhhCCceeeecceeCCCceeeEEEeeeeHHHHHHHhccccchhhccccccCceeeccCCHHHHHHHHHHHHHHHHHHHH
Q psy14466 93 QENYGSKMYFNTHIPMDDLNVTLKYGIINRQHFLSDLLDWQHLYVAGRLHKPVFTFHKLTNYELSAAIHLNLTSAVHAAL 172 (231)
Q Consensus 93 q~~~gagVyyN~~V~~~~~~~~iKYGVis~~~l~~DL~~W~~lYlaGRl~KPV~~l~~~~~~~i~~a~~~Nl~sAl~~AL 172 (231)
|+++||||||||+|.++| +.|||||||++|+.+||++|+++||||||||||+++....+ ..+.++..|+++|+++||
T Consensus 87 Q~n~gagVyyN~~v~vng--r~iKYGVvS~~~l~qDll~Wn~~YlaGRlqKPV~~l~~~~e-~~~~~~s~N~~sAlh~aL 163 (313)
T KOG2986|consen 87 QQNFGAGVYYNPFVNVNG--RKIKYGVVSMEDLLQDLLDWNTFYLAGRLQKPVKILKNDLE-DWQDNLSANLRSALHAAL 163 (313)
T ss_pred HHhcccceEeccceeEcC--ceeeeeeeeHHHHHHHHHhhhhheeecccccchHhhhCcHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999999998854433 359999999999999999
Q ss_pred HcCCCCCCHHHHHHHHHccccCCCcccCCCCChhhhhhhhhhcHHHHHHHhHHHhhhh
Q psy14466 173 LLLPEHFSEYDLLSTITNLSYSGDFRMTFGENKNKIDNIVQGQLEQFRLLYSPILDNI 230 (231)
Q Consensus 173 llLP~~fte~~Ly~~I~~LSY~GD~Rm~~gE~~~Kv~nIV~~~~~~f~~lY~p~l~~~ 230 (231)
|+||++|||+|||.+|++|||+|||||.+||||+||.|||++|+++|++||.|+|+++
T Consensus 164 LlLpe~Fte~dLy~~I~~LSY~GD~RM~~gEd~~KVnnIV~~n~~~f~~lY~pll~e~ 221 (313)
T KOG2986|consen 164 LLLPEKFTEFDLYKKIVSLSYAGDIRMFFGEDPNKVNNIVKGNFERFQELYKPLLEEC 221 (313)
T ss_pred HhCcccCcHHHHHHHHHhhccccceEEEeccChHHHHHHhhhHHHHHHHHHHHHhhhC
Confidence 9999999999999999999999999998899999999999999999999999999876
No 3
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=82.38 E-value=4.8 Score=28.83 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCCCeeEEEEecccccccCCCCCCCCceEEEEEeCCCchHHHH
Q psy14466 17 DFFQIILNQFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVNDSEKFHSE 69 (231)
Q Consensus 17 ~~~~~il~~F~~~~v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d~~~wH~~ 69 (231)
+.+.+++.+++ ..+..++-|||-+..-.. .++=||+.+.++++......
T Consensus 5 ~~i~~~l~~~~-~~i~~i~LfGS~arg~~~---~~SDiDl~vi~~~~~~~~~~ 53 (93)
T cd05403 5 EEILEILRELL-GGVEKVYLFGSYARGDAR---PDSDIDLLVIFDDPLDPLEL 53 (93)
T ss_pred HHHHHHHHHHh-CCccEEEEEeeeecCCCC---CCCCeeEEEEeCCCCCHHHH
Confidence 34455556555 358999999998886543 45679999999988766654
No 4
>PRK13746 aminoglycoside resistance protein; Provisional
Probab=76.85 E-value=6.2 Score=36.05 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCCCeeEEEEecccccccCCCCCCCCceEEEEEeCCCchHHHH
Q psy14466 18 FFQIILNQFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVNDSEKFHSE 69 (231)
Q Consensus 18 ~~~~il~~F~~~~v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d~~~wH~~ 69 (231)
.+.+++.++.-+.+.++..|||.+..... ..+-||+.++|+.+......
T Consensus 15 ~~~~~l~~~l~~~l~~vyLfGS~~~G~~~---p~SDIDllvvv~~~l~~~~~ 63 (262)
T PRK13746 15 EACAVIERHLEPTLLAIHLYGSAVDGGLK---PHSDIDLLVTVAVPLDETTR 63 (262)
T ss_pred HHHHHHHHhCcccEEEEEEECCcccCCCC---CCCceeEEEEeCCCCCHHHH
Confidence 44566666652569999999999996544 57789999999998655443
No 5
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis. Sequence and secondary structure comparisons of regions surrounding these aspartates with sequences of other polymerases revealed a significant homology to the palm structure of DNA polymerase beta, terminal deoxynucleotidyltransferase and DNA polymerase IV of Saccharomyces cerevisiae, all members of the family X of polymerases. This homology extends as far as cca: tRNA nucleotidyltransferase and streptomycin adenylyltransferase, an antibiotic resistance factor [, ]. Proteins containing this domain include kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTase inactivates antibiotics by catalysing the addition of a nucleotidyl group onto the drug. In experiments, Mn2+ strongly stimulated this reaction due to a 50-fold lower Ki for 8-azido-ATP in the presence of Mn2+. Mutations of the highly conserved Asp residues 113, 115, and 167, critical for metal binding in the catalytic domain of bovine poly(A) polymerase, led to a strong reduction of cross-linking efficiency, and Mn2+ no longer stimulated the reaction. Mutations in the region of the "helical turn motif" (a domain binding the triphosphate moiety of the nucleotide) and in the suspected nucleotide-binding helix of bovine poly(A) polymerase impaired ATP binding and catalysis. The results indicate that ATP is bound in part by the helical turn motif and in part by a region that may be a structural analogue of the fingers domain found in many polymerases.; GO: 0016779 nucleotidyltransferase activity; PDB: 4EBK_B 4EBJ_A 1KNY_A 2B4V_A 2B56_A 2B51_A 1NO5_B 1Q79_A 1Q78_A 1F5A_A ....
Probab=73.37 E-value=5.1 Score=29.07 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=27.2
Q ss_pred eeEEEEecccccccCCCCCCCCceEEEEEeCCCch
Q psy14466 31 VVHAFGYGSGVFQQANKSSIKSMVDIILVVNDSEK 65 (231)
Q Consensus 31 v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d~~~ 65 (231)
+..++.|||-+..-.. .++-||+++.++++..
T Consensus 14 ~~~v~lfGS~a~g~~~---~~SDIDl~i~~~~~~~ 45 (93)
T PF01909_consen 14 VAEVYLFGSYARGDAT---PDSDIDLLIILDEPED 45 (93)
T ss_dssp TEEEEEEHHHHHTSSC---TTSCEEEEEEESSTSC
T ss_pred CCEEEEECCcccCcCC---CCCCEEEEEEeCCccc
Confidence 7999999999996544 5688999999998864
No 6
>PF04439 Adenyl_transf: Streptomycin adenylyltransferase; InterPro: IPR007530 Also known as aminoglycoside 6-adenylyltransferase (2.7.7 from EC), this protein confers resistance to aminoglycoside antibiotics.; PDB: 2PBE_A.
Probab=55.46 E-value=47 Score=30.48 Aligned_cols=110 Identities=21% Similarity=0.318 Sum_probs=54.0
Q ss_pred HHHHHHHHH--hCCCCCeeEEEEecccccccCCCCCCCCceEEEEEeCCCchHHHHHhhcCccchhhHhhhccchhhhhh
Q psy14466 16 HDFFQIILN--QFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVNDSEKFHSENLIRNNNHYSFLKYFGPGVLKKVQ 93 (231)
Q Consensus 16 ~~~~~~il~--~F~~~~v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d~~~wH~~Nl~~np~HYs~l~~lG~~~i~~~q 93 (231)
.++++.|++ .=. +-|++++-=||-+.+....+ .-.-.|++++|+|+..+=.. + +++..||...|...-
T Consensus 5 ~em~~~Il~~A~~d-~rIraV~l~GSR~n~~~~~D-~fqDyDIv~~v~d~~~f~~d-----~---~Wi~~FG~~li~q~p 74 (282)
T PF04439_consen 5 QEMMDLILEFAKQD-ERIRAVILNGSRANPNAPKD-EFQDYDIVYVVTDIESFIKD-----D---SWIDQFGERLIMQKP 74 (282)
T ss_dssp HHHHHHHHHHHHH--TTEEEEEE-----------------EEEEEEES-HHHHHT------S---GGGGGG--EEEEE-T
T ss_pred HHHHHHHHHHHhcC-CcEEEEEEecCCCCCCCCcc-ccccccEEEEecchhhhhhc-----c---hHHHHhChHHhEecc
Confidence 445666655 223 47999999999999875522 22237999999998887443 2 379999998765552
Q ss_pred hh---hCC--ceeeeccee-CCCceeeEEEeeeeHHHHHHHhccccchhh
Q psy14466 94 EN---YGS--KMYFNTHIP-MDDLNVTLKYGIINRQHFLSDLLDWQHLYV 137 (231)
Q Consensus 94 ~~---~ga--gVyyN~~V~-~~~~~~~iKYGVis~~~l~~DL~~W~~lYl 137 (231)
+. +++ +=.|.-++- -+| .+|=--+++.+.+.+=+.+++.+|.
T Consensus 75 e~~~~~~~~~~~~~~~L~~f~dg--~rIDltl~~~~~l~~~~~~~d~~~~ 122 (282)
T PF04439_consen 75 EDMDLFPPDLGNWFSYLMLFEDG--NRIDLTLIPLERLEEYIKESDSLYK 122 (282)
T ss_dssp TS-SSS---STT-EEEEEEETTS---EEEEEEEEGGGHHHHHH-------
T ss_pred cccccCCcccCCCeeEEEEecCC--cEEEEEEecHHHHHHHHhhcCcCcE
Confidence 21 221 234444444 367 8999999999998877766766664
No 7
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins. This superfamily includes the NT domains of DNA polymerase beta and other family X DNA polymerases, as well as the NT domains of Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly (A) polymerases, terminal uridylyl transferases, and Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. The Escherichia coli CCA-adding enzyme belongs to this superfamily but is not included as this enzyme lacks the N-terminal helix conserved in the remainder of the superfamily. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate coordinate two divalent metal cations that are essential for catalysis. These divalent metal ions are
Probab=49.12 E-value=52 Score=22.10 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCCCeeEEEEecccccccCCCCCCCCceEEEEE
Q psy14466 18 FFQIILNQFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILV 59 (231)
Q Consensus 18 ~~~~il~~F~~~~v~~afaYGSgvf~Q~~~~~~~~miD~i~~ 59 (231)
.+++.+.... ++..+..|||-++.... ...-||+.+.
T Consensus 6 ~i~~~l~~~~--~~~~v~lfGS~arg~~~---~~SDIDi~v~ 42 (49)
T cd05397 6 IIKERLKKLV--PGYEIVVYGSLVRGLLK---KSSDIDLACV 42 (49)
T ss_pred HHHHHHHhhc--CCcEEEEECCcCCCCCC---CCCCEEEEEE
Confidence 3444445444 36789999999986543 3445998765
No 8
>PF13728 TraF: F plasmid transfer operon protein
Probab=40.49 E-value=44 Score=29.34 Aligned_cols=94 Identities=15% Similarity=0.067 Sum_probs=50.9
Q ss_pred HHHhCCCCCeeEEEEe-cccccccCCCCC-----CCCceEEEEEeCCCchH-HHHHhhcCccchhhHhhhccchhhhhhh
Q psy14466 22 ILNQFPTEYVVHAFGY-GSGVFQQANKSS-----IKSMVDIILVVNDSEKF-HSENLIRNNNHYSFLKYFGPGVLKKVQE 94 (231)
Q Consensus 22 il~~F~~~~v~~afaY-GSgvf~Q~~~~~-----~~~miD~i~~V~d~~~w-H~~Nl~~np~HYs~l~~lG~~~i~~~q~ 94 (231)
.+.... ......|+| |+|-+++..... ...-+.++.+.-|-.-. +=.|-..++. ..+.||..
T Consensus 114 ~l~~la-~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g---~~~~l~v~------- 182 (215)
T PF13728_consen 114 ALKQLA-QKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPG---QAKRLGVK------- 182 (215)
T ss_pred HHHHHh-hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHH---HHHHcCCC-------
Confidence 444444 455677777 778888643211 33344554443331110 1111111222 23456654
Q ss_pred hhCCceeeecceeCCCceeeEEEeeeeHHHHHHHh
Q psy14466 95 NYGSKMYFNTHIPMDDLNVTLKYGIINRQHFLSDL 129 (231)
Q Consensus 95 ~~gagVyyN~~V~~~~~~~~iKYGVis~~~l~~DL 129 (231)
..|+-+..|| -.+....+.||++|.++|.+-+
T Consensus 183 ~~Pal~Lv~~---~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 183 VTPALFLVNP---NTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred cCCEEEEEEC---CCCeEEEEeeecCCHHHHHHhh
Confidence 4677777776 2345789999999999998743
No 9
>PF11394 DUF2875: Protein of unknown function (DUF2875); InterPro: IPR021531 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=34.76 E-value=26 Score=34.58 Aligned_cols=49 Identities=31% Similarity=0.289 Sum_probs=36.7
Q ss_pred HhccccchhhccccccCceeeccCCHH--HHHH-HHHHHHHHHHHHHHHcCCC
Q psy14466 128 DLLDWQHLYVAGRLHKPVFTFHKLTNY--ELSA-AIHLNLTSAVHAALLLLPE 177 (231)
Q Consensus 128 DL~~W~~lYlaGRl~KPV~~l~~~~~~--~i~~-a~~~Nl~sAl~~ALllLP~ 177 (231)
-|.+|+..=+-|.||+||++-. .|+. ++.. ++...|+.|-..|+=.||+
T Consensus 290 ql~~fd~~P~LgyLHRPv~v~l-~d~~G~~lk~a~~a~al~a~W~~a~~~lp~ 341 (451)
T PF11394_consen 290 QLKQFDAAPVLGYLHRPVKVPL-TDEHGKPLKRAAQAKALQAGWKQALDTLPE 341 (451)
T ss_pred HHHHHhhchhhhhhcCceeccc-ccccCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 3677888889999999998652 3333 5655 5667788888888888886
No 10
>PF04229 GrpB: GrpB protein; InterPro: IPR007344 This family of uncharacterised proteins is also known as GrpB.; PDB: 2NRK_A.
Probab=32.93 E-value=91 Score=26.10 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=30.5
Q ss_pred HHHHhCCCCCeeEEEEecccccccCCCCCCCCceEEEEEeCCCchHH
Q psy14466 21 IILNQFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVNDSEKFH 67 (231)
Q Consensus 21 ~il~~F~~~~v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d~~~wH 67 (231)
+|...++ .++...=--||.-.++-. .+|.||+.++|+|....-
T Consensus 23 ~l~~~l~-~~~~~IeHIGSTsVpgl~---AKpiIDI~v~V~~~~~~~ 65 (167)
T PF04229_consen 23 RLREALG-DPALRIEHIGSTSVPGLA---AKPIIDILVGVEDLEDLD 65 (167)
T ss_dssp HHHHHHG-GGEEEEEEESGGGSTT-----B-S-EEEEEEES-SGGGG
T ss_pred HHHHHhc-hhhhEEEEeccceeCCcc---cCCeeeEEeccCChHHHH
Confidence 4555566 676677788999999866 799999999999987764
No 11
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=29.45 E-value=1.7e+02 Score=22.14 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCCeeEEEEecccccccCCCCCCCCceEEEEEeCCC
Q psy14466 16 HDFFQIILNQFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVNDS 63 (231)
Q Consensus 16 ~~~~~~il~~F~~~~v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d~ 63 (231)
.+.++++++++. +. .-...|||.+-.-.. .+.-||+.+..+++
T Consensus 6 ~~~l~~~i~~~~-~~-~~v~~fGS~~~g~~~---~~SDiDl~i~~~~~ 48 (114)
T cd05402 6 LDRLQELIKEWF-PG-AKLYPFGSYVTGLGL---PGSDIDLCLLGPNH 48 (114)
T ss_pred HHHHHHHHHHHC-CC-CEEEEecccccCCCC---CCCCeeEEEEeCCC
Confidence 345677777643 23 346899998875443 56789999999887
No 12
>COG1708 Predicted nucleotidyltransferases [General function prediction only]
Probab=25.96 E-value=1.6e+02 Score=21.93 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=26.9
Q ss_pred HhCCCCCeeEEEEecccccccCCCCCCCCceEEEEEeCC
Q psy14466 24 NQFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVND 62 (231)
Q Consensus 24 ~~F~~~~v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d 62 (231)
..+. ..+..+.-+||-++.-.. ..+=||+.+++.|
T Consensus 20 ~~~~-~~~~~v~LfGS~arG~~~---~~SDiDv~vv~~~ 54 (128)
T COG1708 20 EKKL-GGDLLIYLFGSYARGDFV---KESDIDLLVVSDD 54 (128)
T ss_pred HHhc-CCCeEEEEEccCcccccc---cCCCeeEEEEcCC
Confidence 3344 578999999999997544 5778999999733
No 13
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.31 E-value=27 Score=34.32 Aligned_cols=85 Identities=22% Similarity=0.395 Sum_probs=53.6
Q ss_pred eeeEEEeeeeHHHHHHH----hccccchhhccccccCceeeccCCHH--HHHHHHHHHHHHHHHHHHHcCCCCCCH----
Q psy14466 112 NVTLKYGIINRQHFLSD----LLDWQHLYVAGRLHKPVFTFHKLTNY--ELSAAIHLNLTSAVHAALLLLPEHFSE---- 181 (231)
Q Consensus 112 ~~~iKYGVis~~~l~~D----L~~W~~lYlaGRl~KPV~~l~~~~~~--~i~~a~~~Nl~sAl~~ALllLP~~fte---- 181 (231)
......|-...+.+.+| ..+|+++-+| .+.|+ .+-+.+..-...-++.-+|+-| +|-.
T Consensus 60 ~h~~l~G~~~id~~~~~~~~i~g~WdtlILa-----------vtaDAY~~VL~ql~~~~L~~vk~iVLvSP-tfGS~~lv 127 (429)
T PF10100_consen 60 QHQALSGECTIDHVFQDYEEIEGEWDTLILA-----------VTADAYLDVLQQLPWEVLKRVKSIVLVSP-TFGSHLLV 127 (429)
T ss_pred hhhhhcCeEEhhHhhcCHHHhcccccEEEEE-----------echHHHHHHHHhcCHHHHhhCCEEEEECc-ccchHHHH
Confidence 47889999999999999 5789987543 24443 4444333333333333334444 3432
Q ss_pred HHHHH------HHHccc-cCCCcccCCCCChhhh
Q psy14466 182 YDLLS------TITNLS-YSGDFRMTFGENKNKI 208 (231)
Q Consensus 182 ~~Ly~------~I~~LS-Y~GD~Rm~~gE~~~Kv 208 (231)
+.+.. .|.|+| |.||=|..-||-+++|
T Consensus 128 ~~~l~~~~~~~EVISFStY~gdTr~~d~~~~~~v 161 (429)
T PF10100_consen 128 KGFLNDLGPDAEVISFSTYYGDTRWSDGEQPNRV 161 (429)
T ss_pred HHHHHhcCCCceEEEeecccccceeccCCCccee
Confidence 23333 355788 9999999999988765
No 14
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=24.67 E-value=2e+02 Score=23.25 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=41.2
Q ss_pred CCeeEE-EEecccccccCCCCCCCCceEEEEEeCCCchHHHHHhhcCccchhhHhhhccchhhhhhhhhC
Q psy14466 29 EYVVHA-FGYGSGVFQQANKSSIKSMVDIILVVNDSEKFHSENLIRNNNHYSFLKYFGPGVLKKVQENYG 97 (231)
Q Consensus 29 ~~v~~a-faYGSgvf~Q~~~~~~~~miD~i~~V~d~~~wH~~Nl~~np~HYs~l~~lG~~~i~~~q~~~g 97 (231)
+|+.+| ++-||.-+.... ..+-+|..++.+| ...+.|-.+++.|+.+.+..+.+ .|
T Consensus 46 pp~~~a~lalGS~GR~E~~---~~sDqD~alv~~d---------~~~~~~~~~f~~~a~~~~~~L~~-~G 102 (138)
T PF03445_consen 46 PPVPFAWLALGSYGRREQT---LYSDQDNALVFED---------EESEEDRAYFEAFAERLVDALDE-CG 102 (138)
T ss_pred CCCCEEEEEECcccccCCC---cCccccceeeecC---------ccchhHHHHHHHHHHHHHHHHHH-cC
Confidence 466776 478998887655 5667899999988 33444445889999998888887 44
No 15
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=23.25 E-value=43 Score=31.14 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=24.4
Q ss_pred CCChhhhhh------hhhhcHHHHHHHhHHHhhh
Q psy14466 202 GENKNKIDN------IVQGQLEQFRLLYSPILDN 229 (231)
Q Consensus 202 gE~~~Kv~n------IV~~~~~~f~~lY~p~l~~ 229 (231)
|||||+... |.+++-+++++||-..|+.
T Consensus 69 GenPNRlq~yyQfQVilKPsP~NiQeLYL~SL~~ 102 (298)
T COG0752 69 GENPNRLQHYYQFQVIIKPSPDNIQELYLGSLEA 102 (298)
T ss_pred CCCchhhhhheeEEEEecCCCccHHHHHHHHHHH
Confidence 899999876 6788999999999887764
No 16
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=20.71 E-value=66 Score=28.41 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=15.3
Q ss_pred HHhCCCCCeeEEEEecccccccC
Q psy14466 23 LNQFPTEYVVHAFGYGSGVFQQA 45 (231)
Q Consensus 23 l~~F~~~~v~~afaYGSgvf~Q~ 45 (231)
++.=| ++ -++|+|||.+....
T Consensus 5 ~s~~~-~~-~WVFgYGSLmW~P~ 25 (190)
T COG3703 5 LAADP-DE-LWVFGYGSLMWNPG 25 (190)
T ss_pred hccCC-CC-eEEEEecceeecCC
Confidence 33334 55 89999999998754
No 17
>PF07913 DUF1678: Protein of unknown function (DUF1678); InterPro: IPR012465 This family is composed of uncharacterised proteins expressed by Methanopyrus kandleri, a hyperthermophilic archaeon.
Probab=20.51 E-value=75 Score=27.94 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHc---CCCCCCHHHHHHHHHccccCC------CcccCCCCChhhhhhhhhh
Q psy14466 155 ELSAAIHLNLTSAVHAALLL---LPEHFSEYDLLSTITNLSYSG------DFRMTFGENKNKIDNIVQG 214 (231)
Q Consensus 155 ~i~~a~~~Nl~sAl~~ALll---LP~~fte~~Ly~~I~~LSY~G------D~Rm~~gE~~~Kv~nIV~~ 214 (231)
++.+.+..|++++|.+-|-- +|.+- ..+...+.++|.+.+ .+|+.++|-|++++.++-.
T Consensus 91 eLarHlmRnlRsvLktlL~evs~lpyk~-ar~VL~rglal~FdarP~~sp~IrdlLe~lPdrlesflvr 158 (201)
T PF07913_consen 91 ELARHLMRNLRSVLKTLLTEVSDLPYKK-ARRVLARGLALAFDARPSESPRIRDLLEELPDRLESFLVR 158 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHhcccccccCCCCCCchHHHHHHhCccHHHHHHHH
Confidence 77788999999999876643 44322 344555555665643 3556666777776666543
No 18
>PHA03328 nuclear egress lamina protein UL31; Provisional
Probab=20.29 E-value=73 Score=30.24 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHccccCCCccc
Q psy14466 178 HFSEYDLLSTITNLSYSGDFRM 199 (231)
Q Consensus 178 ~fte~~Ly~~I~~LSY~GD~Rm 199 (231)
+.++.++|++++.|.+.||++-
T Consensus 279 ~V~~~dIy~k~~dL~f~dEl~~ 300 (316)
T PHA03328 279 AVSAEDIYCKMCDLNFDGELLL 300 (316)
T ss_pred ccCHHHHHHHHhCCCCChHHHH
Confidence 5689999999999999999876
Done!