Query psy14466
Match_columns 231
No_of_seqs 106 out of 206
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 20:35:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jz0_A Lincosamide nucleotidyl 91.4 0.52 1.8E-05 42.1 7.5 99 14-133 23-125 (287)
2 2rff_A Putative nucleotidyltra 82.6 2.2 7.7E-05 32.3 5.4 43 17-64 21-63 (111)
3 1no5_A Hypothetical protein HI 74.2 5.3 0.00018 29.9 5.2 44 18-66 16-59 (114)
4 2pbe_A AAD6, aminoglycoside 6- 68.1 11 0.00037 33.3 6.6 103 16-130 7-117 (294)
5 1wot_A Putative minimal nucleo 58.8 5.7 0.0002 29.0 2.5 42 17-64 14-55 (98)
6 1ylq_A Putative nucleotidyltra 58.2 18 0.00062 26.1 5.2 42 19-66 8-50 (96)
7 4ebj_A Aminoglycoside nucleoti 58.2 15 0.00051 32.8 5.5 43 16-63 27-69 (272)
8 1kny_A Kntase, kanamycin nucle 53.1 13 0.00046 31.5 4.3 42 19-64 20-61 (253)
9 2nrk_A Hypothetical protein GR 39.1 50 0.0017 26.8 5.5 45 20-68 24-68 (173)
10 3lqn_A CBS domain protein; csg 23.2 64 0.0022 23.6 3.2 32 117-148 61-100 (150)
11 3fio_A A cystathionine beta-sy 22.7 50 0.0017 21.0 2.3 29 117-145 35-67 (70)
12 1jql_B DNA polymerase III, del 21.4 1.7E+02 0.0057 22.1 5.4 72 120-201 4-81 (140)
No 1
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=91.38 E-value=0.52 Score=42.07 Aligned_cols=99 Identities=13% Similarity=0.227 Sum_probs=66.8
Q ss_pred CcHHHHHHHHHhC--CCCCeeEEEEecccccccCCCCCCCCceEEEEEeCC--CchHHHHHhhcCccchhhHhhhccchh
Q psy14466 14 TKHDFFQIILNQF--PTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVND--SEKFHSENLIRNNNHYSFLKYFGPGVL 89 (231)
Q Consensus 14 ~~~~~~~~il~~F--~~~~v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d--~~~wH~~Nl~~np~HYs~l~~lG~~~i 89 (231)
+..++++.|++.. . +.|++++.|||=...... .-.-+||+++|+| ...+-. + +++..+|+..+
T Consensus 23 ~~~e~l~~I~~~~~~d-~~i~av~l~GS~~~~~~D---~~SD~Di~~vV~~~~~~~f~~--------~-~Wl~~fG~~~~ 89 (287)
T 3jz0_A 23 KQKELIANVKNLTESD-ERITACMMYGSFTKGEGD---QYSDIEFYIFLKHSITSNFDS--------S-NWLFDVAPYLM 89 (287)
T ss_dssp HHHHHHHHHHHHHHHC-TTEEEEEECSGGGTTCCC---TTCCEEEEEEECGGGTTTCCH--------H-HHHHHHCCEEE
T ss_pred CHHHHHHHHHHHHhcC-CCEEEEEEECCccCCCCC---CccceeEEEEEcCcchhhhhh--------H-HHHHHhhhhhe
Confidence 3456677776633 2 479999999999976433 6678999999998 556521 2 67999999877
Q ss_pred hhhhhhhCCceeeecceeCCCceeeEEEeeeeHHHHHHHhcccc
Q psy14466 90 KKVQENYGSKMYFNTHIPMDDLNVTLKYGIINRQHFLSDLLDWQ 133 (231)
Q Consensus 90 ~~~q~~~gagVyyN~~V~~~~~~~~iKYGVis~~~l~~DL~~W~ 133 (231)
. +.+.+| |+ -.+--+| .+|-.-+++.+++ .....|.
T Consensus 90 ~-f~~~~~---~~-l~lF~Dg--~riDl~l~~~~~l-~~~~~~~ 125 (287)
T 3jz0_A 90 L-YKNEYG---TE-VVIFDNL--IRGEFHFLSEKDM-NIIPSFK 125 (287)
T ss_dssp E-EECTTS---CE-EEEETTS--CEEEEEEEEGGGG-GGGGGGG
T ss_pred E-eecccc---eE-EEEecCC--cEEEEEEeeHHHH-HHHhccc
Confidence 5 222222 22 1122377 8999999999987 4444454
No 2
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=82.56 E-value=2.2 Score=32.35 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCCCeeEEEEecccccccCCCCCCCCceEEEEEeCCCc
Q psy14466 17 DFFQIILNQFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVNDSE 64 (231)
Q Consensus 17 ~~~~~il~~F~~~~v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d~~ 64 (231)
+.++.+.++|| .+..++-|||-+..... .++-||+.+..+++.
T Consensus 21 ~~~~~l~~~~~--~v~~v~LFGS~ArG~~~---~~SDIDl~V~~~~~~ 63 (111)
T 2rff_A 21 EIVEEVASSFP--NLEEVYIFGSRARGDYL---DTSDIDILFVFKGIK 63 (111)
T ss_dssp HHHHHHHHHCT--TEEEEEEESHHHHSCCC---TTCCEEEEEEESSCT
T ss_pred HHHHHHHHHcC--CccEEEEEeeeecCCCC---CCCCEEEEEEecCCC
Confidence 34566777887 68999999999986544 567899999988653
No 3
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=74.24 E-value=5.3 Score=29.91 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCCCeeEEEEecccccccCCCCCCCCceEEEEEeCCCchH
Q psy14466 18 FFQIILNQFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVNDSEKF 66 (231)
Q Consensus 18 ~~~~il~~F~~~~v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d~~~w 66 (231)
.+.+++.+++ ++..+.-|||-+..... .++=||+.+.++++..+
T Consensus 16 ~i~~~l~~~~--~v~~v~LFGS~ArG~~~---~~SDIDl~V~~~~~~~~ 59 (114)
T 1no5_A 16 IVKTILQQLV--PDYTVWAFGSRVKGKAK---KYSDLDLAIISEEPLDF 59 (114)
T ss_dssp HHHHHHHHHC--TTSEEEEEGGGTTTCCC---TTCCEEEEEECSSCCCH
T ss_pred HHHHHHHHhC--CCCEEEEEeccCCCCCC---CCCCeEEEEEeCCCCCH
Confidence 4555666665 46899999999986544 56789999998876443
No 4
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=68.08 E-value=11 Score=33.25 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCCCCC-eeEEEEecccccccCCCCCCCCceEEEEEeCCCchHHHHHhhcCccchhhHhhhccchhhhhhh
Q psy14466 16 HDFFQIILNQFPTEY-VVHAFGYGSGVFQQANKSSIKSMVDIILVVNDSEKFHSENLIRNNNHYSFLKYFGPGVLKKVQE 94 (231)
Q Consensus 16 ~~~~~~il~~F~~~~-v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d~~~wH~~Nl~~np~HYs~l~~lG~~~i~~~q~ 94 (231)
.++++.|++....++ |++++..||-+-+....+ .-.=+|++++|+|+..+ ..+. +++..+|+..+..--+
T Consensus 7 ~em~~~i~~~a~~d~rI~Av~l~GSr~n~~~~~D-~fSDyDi~~vv~d~~~~-----~~~~---~wl~~fg~~l~~~~~e 77 (294)
T 2pbe_A 7 QEMMDIFLDFALNDERIRLVTLEGSRTNRNIPPD-NFQDYDISYFVTDVESF-----KEND---QWLEIFGKRIMMQKPE 77 (294)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEC-------------CCCEEEEEEESCHHHH-----HTCS---GGGGGGCCEEEEECTT
T ss_pred HHHHHHHHHHHcCCcCEEEEEEecCCCCCCCCCC-CcccceEEEEEcCchHh-----hhhH---HHHHHHhhHHhhcccc
Confidence 356666665322234 999999999777553211 34459999999999443 3332 2577788875543211
Q ss_pred h-------hCCceeeecceeCCCceeeEEEeeeeHHHHHHHhc
Q psy14466 95 N-------YGSKMYFNTHIPMDDLNVTLKYGIINRQHFLSDLL 130 (231)
Q Consensus 95 ~-------~gagVyyN~~V~~~~~~~~iKYGVis~~~l~~DL~ 130 (231)
. .|-.--|.- +--+| .+|---.++.+++..-+.
T Consensus 78 ~~~~~~~~~~~~~~~l~-lf~dg--~rIDl~~~~~~~l~~~~~ 117 (294)
T 2pbe_A 78 DMELFPPELGNWFSYII-LFEDG--NKLDLTLIPIREAEDYFA 117 (294)
T ss_dssp SCSSSCCCSTTCEEEEE-EETTS--CEEEEEEEEGGGHHHHHH
T ss_pred ccccCcccCCCceeEEE-EecCC--cEEEEEEecHHHHHHHHh
Confidence 1 111111111 12367 888889999999888554
No 5
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=58.79 E-value=5.7 Score=29.04 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCCCeeEEEEecccccccCCCCCCCCceEEEEEeCCCc
Q psy14466 17 DFFQIILNQFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVNDSE 64 (231)
Q Consensus 17 ~~~~~il~~F~~~~v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d~~ 64 (231)
+.++.+.++|+ +..+.-|||-+..... .++-||+.+.++++.
T Consensus 14 ~~i~~l~~~~~---v~~v~LFGS~arG~~~---~~SDiDl~V~~~~~~ 55 (98)
T 1wot_A 14 EAVLSLCARHG---AVRVRVFGSVARGEAR---EDSDLDLLVAFEEGR 55 (98)
T ss_dssp HHHHHHHHHHT---CSSCEECSHHHHTCCC---TTCCCEEEECCCSSC
T ss_pred HHHHHHHHHcC---CcEEEEEccccCCCCC---CCCCEEEEEEeCCCC
Confidence 34566777776 6889999999987654 567899999877643
No 6
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=58.23 E-value=18 Score=26.14 Aligned_cols=42 Identities=24% Similarity=0.201 Sum_probs=29.7
Q ss_pred HHHHHHhCCCCCeeEEEEecccccccCCCCCCC-CceEEEEEeCCCchH
Q psy14466 19 FQIILNQFPTEYVVHAFGYGSGVFQQANKSSIK-SMVDIILVVNDSEKF 66 (231)
Q Consensus 19 ~~~il~~F~~~~v~~afaYGSgvf~Q~~~~~~~-~miD~i~~V~d~~~w 66 (231)
.+.+...++ + ..+.-|||-++.... .+ +-||+.+.++++..+
T Consensus 8 ~~~l~~~~~--~-~~v~LFGS~ArG~~~---~~~SDiDllV~~~~~~~~ 50 (96)
T 1ylq_A 8 KEITKKDVQ--D-AEIYLYGSVVEGDYS---IGLSDIDVAIVSDVFEDR 50 (96)
T ss_dssp HHHHHHHCT--T-CEEEEESHHHHCCSS---SCCCSEEEEEECGGGGSH
T ss_pred HHHHHHHcC--C-cEEEEEEEEEeCCCC---CCCCceEEEEEeCCCCCH
Confidence 334444577 3 889999999987644 45 789999988764433
No 7
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=58.19 E-value=15 Score=32.77 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCCCeeEEEEecccccccCCCCCCCCceEEEEEeCCC
Q psy14466 16 HDFFQIILNQFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVNDS 63 (231)
Q Consensus 16 ~~~~~~il~~F~~~~v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d~ 63 (231)
..+.++|.+.|+ ++..+.-|||-.+.... .++-||+.+++++.
T Consensus 27 ~~ive~L~~~~~--~i~~I~LFGS~ARG~~~---~~SDIDilVv~~~~ 69 (272)
T 4ebj_A 27 ARWVDRLREEYA--DAVAILLKGSYARGDAA---TWSDIDFDVLVSTQ 69 (272)
T ss_dssp HHHHHHHHHHCT--TEEEEEEEHHHHHTCCC---TTCCEEEEEEESST
T ss_pred HHHHHHHHHhcC--CceEEEEEeceeCCCCC---CCCceEEEEEecCC
Confidence 345667888898 68999999999997765 67789999998764
No 8
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=53.13 E-value=13 Score=31.55 Aligned_cols=42 Identities=24% Similarity=0.198 Sum_probs=33.3
Q ss_pred HHHHHHhCCCCCeeEEEEecccccccCCCCCCCCceEEEEEeCCCc
Q psy14466 19 FQIILNQFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVNDSE 64 (231)
Q Consensus 19 ~~~il~~F~~~~v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d~~ 64 (231)
.+.+.++|+ +.+..+.-|||-++.... .++-||+.+.++++.
T Consensus 20 ~~~l~~~~~-~~~~~~~lfGS~arg~~~---~~SDiD~~v~~~~~~ 61 (253)
T 1kny_A 20 KERILDKYG-DDVKAIGVYGSLGRQTDG---PYSDIEMMCVMSTEE 61 (253)
T ss_dssp HHHHHHHHG-GGEEEEEEEHHHHHTCCC---TTCCEEEEEEESSTT
T ss_pred HHHHHHHcC-CCeeEEEEEccccCCCCC---CCCCeeEEEEecCcc
Confidence 345555787 779999999999997655 678899999988763
No 9
>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich protein, enterococcus FAE PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis} SCOP: d.218.1.14
Probab=39.10 E-value=50 Score=26.81 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=35.4
Q ss_pred HHHHHhCCCCCeeEEEEecccccccCCCCCCCCceEEEEEeCCCchHHH
Q psy14466 20 QIILNQFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVNDSEKFHS 68 (231)
Q Consensus 20 ~~il~~F~~~~v~~afaYGSgvf~Q~~~~~~~~miD~i~~V~d~~~wH~ 68 (231)
++|.+.++ +.+...---||.--++-. .+|.||+.++|+|....-.
T Consensus 24 ~~l~~~l~-~~~~~I~HIGSTsVpGl~---AKPIIDI~v~V~~~~~~~~ 68 (173)
T 2nrk_A 24 QALKQILK-ENCLKVEHIGSTSVPNLA---AKPIIDFLVIVEEIEKVDL 68 (173)
T ss_dssp HHHHHHHG-GGEEEEEEESGGGSTTCC---BCSCEEEEEEESCSGGGGG
T ss_pred HHHHHhcC-CccceEEEECCCCCCCCC---cCCeeEEEeccCCHHHHHH
Confidence 35555666 566777788999999766 7999999999999877653
No 10
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=23.20 E-value=64 Score=23.58 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=24.2
Q ss_pred EeeeeHHHHHHHhc--------cccchhhccccccCceee
Q psy14466 117 YGIINRQHFLSDLL--------DWQHLYVAGRLHKPVFTF 148 (231)
Q Consensus 117 YGVis~~~l~~DL~--------~W~~lYlaGRl~KPV~~l 148 (231)
.|+|+.+|+.+-+. .|...-+.--|.+|+..+
T Consensus 61 ~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v 100 (150)
T 3lqn_A 61 HGLISTAMILDGILGLERIEFERLEEMKVEQVMKQDIPVL 100 (150)
T ss_dssp EEEEEHHHHHHHTBCSSSBCGGGGGGCBGGGTCBSSCCEE
T ss_pred EEEEEHHHHHHHHHhhcccchhHHhcCCHHHHhcCCCcee
Confidence 59999999998775 355666777777777666
No 11
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=22.67 E-value=50 Score=21.00 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=19.1
Q ss_pred EeeeeHHHHHHHhcc----ccchhhccccccCc
Q psy14466 117 YGIINRQHFLSDLLD----WQHLYVAGRLHKPV 145 (231)
Q Consensus 117 YGVis~~~l~~DL~~----W~~lYlaGRl~KPV 145 (231)
.|+|+..|+.+-+.. +...-+.--|.+|+
T Consensus 35 ~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~ 67 (70)
T 3fio_A 35 LGVVTERDILDKVVAKGKNPKEVKVEEIMTKNP 67 (70)
T ss_dssp EEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECT
T ss_pred EEEEEHHHHHHHHHHcCCCcccCCHHHhcCCCC
Confidence 699999999987643 33444555555543
No 12
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=21.36 E-value=1.7e+02 Score=22.05 Aligned_cols=72 Identities=7% Similarity=0.026 Sum_probs=44.7
Q ss_pred eeHHHHHHHhccccchhhccccccCceeeccCCHHHHHHHHHHHHHHHHHHH------HHcCCCCCCHHHHHHHHHcccc
Q psy14466 120 INRQHFLSDLLDWQHLYVAGRLHKPVFTFHKLTNYELSAAIHLNLTSAVHAA------LLLLPEHFSEYDLLSTITNLSY 193 (231)
Q Consensus 120 is~~~l~~DL~~W~~lYlaGRl~KPV~~l~~~~~~~i~~a~~~Nl~sAl~~A------LllLP~~fte~~Ly~~I~~LSY 193 (231)
+..++|.++|.. . -+||-+++..++ -+.+-....++.++... ...+...++..++.....++|-
T Consensus 4 ~~~~~l~~~l~~--------~-~~pvyll~G~E~-~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~s~sl 73 (140)
T 1jql_B 4 LYPEQLRAQLNE--------G-LRAAYLLLGNDP-LLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSL 73 (140)
T ss_dssp CCGGGHHHHHHH--------C-CCSEEEEESSCH-HHHHHHHHHHHHHHHHTTCCEEECCCCSTTCCHHHHHHHHHCCCT
T ss_pred CCHHHHHHHHhc--------c-CCceEEEEcCcH-HHHHHHHHHHHHHHHHCCCcceeEEEecCCCCHHHHHHHHhcCCC
Confidence 456777776642 1 469998875554 22222222333333221 1223336889999999999999
Q ss_pred CCCcccCC
Q psy14466 194 SGDFRMTF 201 (231)
Q Consensus 194 ~GD~Rm~~ 201 (231)
.||=|.++
T Consensus 74 F~~rrlV~ 81 (140)
T 1jql_B 74 FASRQTLL 81 (140)
T ss_dssp TCCCEEEE
T ss_pred CCCCEEEE
Confidence 99999986
Done!