RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14466
(231 letters)
>gnl|CDD|220124 pfam09139, Mmp37, Mitochondrial matrix Mmp37. MMp37 is a
mitochondrial matrix protein that functions in the
translocation of proteins across the mitochondrial inner
membrane. It has been shown that MMP37 proteins possess
the NTase fold but they have only one active site
carboxylate and thus probably are not able to carry out
enzymatic reaction. These potentially non-active members
of NTase fold superfamily may bind ATP, hydrolysis of
which is necessary for the translocation of proteins
through the membrane.
Length = 324
Score = 265 bits (679), Expect = 5e-89
Identities = 102/221 (46%), Positives = 139/221 (62%), Gaps = 12/221 (5%)
Query: 19 FQIILNQFPTEYVVHAFGYGSGVFQQANKSSIKS-------MVDIILVVNDSEKFHSENL 71
+ IL+QFP + +AF YGSGVF QA S ++ M+D I V+D + +HS NL
Sbjct: 2 LRQILSQFPAP-ISYAFAYGSGVFPQAGYSKSENAQDGKKKMIDFIFGVDDPQHWHSLNL 60
Query: 72 IRNNNHYSFLKYFGPGVLKKVQENYGSKMYFNTHIPMDDLNVTLKYGIINRQHFLSDLLD 131
+N +HYS L+ GP + KVQEN+G+ +YFN + ++ + KYG+++ + L DLLD
Sbjct: 61 KQNPDHYSSLRLLGPKAISKVQENFGAGVYFNPLVNINGRLI--KYGVVSMETLLKDLLD 118
Query: 132 WQHLYVAGRLHKPVFTFHKLTNYELSAAIHLNLTSAVHAALLLLPEHFSEYDLLSTITNL 191
W LY+AGRL KPV K + + A NL SA+ AALLLLPE F+E+ L TI L
Sbjct: 119 WDTLYLAGRLQKPVKVL-KPDDPRIRLANQYNLKSALTAALLLLPESFTEFQLYHTIAGL 177
Query: 192 SYSGDFRMT-FGENKNKIDNIVQGQLEQFRLLYSPILDNII 231
SY GDFRM GEN NK++NIV+G FR LY PIL+++
Sbjct: 178 SYMGDFRMKLGGENPNKVNNIVKGNFANFRRLYKPILEDLP 218
>gnl|CDD|152928 pfam12494, DUF3695, Protein of unknown function (DUF3695). This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 157 and 192 amino
acids in length. There is a single completely conserved
residue D that may be functionally important.
Length = 103
Score = 29.3 bits (66), Expect = 0.57
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 98 SKMYFNTHIPMDDLNVTLK 116
S YF+ IP D L+ LK
Sbjct: 32 SARYFDPQIPKDSLDFQLK 50
>gnl|CDD|239310 cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like
subfamily; composed uncharacterized proteins containing
a TlpA-like TRX domain. Some members show domain
architectures similar to that of E. coli DipZ protein
(also known as DsbD). The only eukaryotic members of the
TlpA family belong to this subfamily. TlpA is a
disulfide reductase known to have a crucial role in the
biogenesis of cytochrome aa3.
Length = 126
Score = 29.6 bits (67), Expect = 0.57
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 117 YGIINRQHFLSDLLDWQHLY------VAGRLHKPVFTFHKLTNYELSAAIHLNLTSAV 168
Y IN H L L D + Y V G +H P F F + SA + +T V
Sbjct: 33 YCCINCLHTLPYLTDLEQKYKDDGLVVIG-VHSPEFAFERDLANVKSAVLRYGITYPV 89
>gnl|CDD|183221 PRK11595, PRK11595, DNA utilization protein GntX; Provisional.
Length = 227
Score = 28.5 bits (64), Expect = 2.7
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 129 LLDWQHLYVAGRLHKP 144
LL+W + L KP
Sbjct: 98 LLEWLQARRSTGLQKP 113
>gnl|CDD|201431 pfam00763, THF_DHG_CYH, Tetrahydrofolate
dehydrogenase/cyclohydrolase, catalytic domain.
Length = 117
Score = 27.5 bits (62), Expect = 2.9
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 155 ELSAAIH-LNLTSAVHAALLLLP--EHFSEYDLLSTI 188
EL A I LN +VH L+ LP +H E +L+ I
Sbjct: 74 ELLALIEKLNADPSVHGILVQLPLPKHIDENKILNAI 110
>gnl|CDD|99967 cd03793, GT1_Glycogen_synthase_GSY2_like, Glycogen synthase, which
is most closely related to the GT1 family of
glycosyltransferases, catalyzes the transfer of a
glucose molecule from UDP-glucose to a terminal branch
of a glycogen molecule, a rate-limit step of glycogen
biosynthesis. GSY2, the member of this family in S.
cerevisiae, has been shown to possess glycogen synthase
activity.
Length = 590
Score = 28.1 bits (63), Expect = 4.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 121 NRQHFLSDLLDWQHLYV 137
NR LSDLLDW++L
Sbjct: 562 NRTERLSDLLDWRNLGR 578
>gnl|CDD|203307 pfam05693, Glycogen_syn, Glycogen synthase. This family consists
of the eukaryotic glycogen synthase proteins GYS1, GYS2
and GYS3. Glycogen synthase (GS) is the enzyme
responsible for the synthesis of -1,4-linked glucose
chains in glycogen. It is the rate limiting enzyme in
the synthesis of the polysaccharide, and its activity is
highly regulated through phosphorylation at multiple
sites and also by allosteric effectors, mainly glucose
6-phosphate (G6P).
Length = 633
Score = 27.8 bits (62), Expect = 5.2
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 121 NRQHFLSDLLDWQHL---YVAGR 140
NR LSDLLDW+ L Y R
Sbjct: 557 NRTERLSDLLDWKRLGRYYRKAR 579
>gnl|CDD|217113 pfam02572, CobA_CobO_BtuR, ATP:corrinoid adenosyltransferase
BtuR/CobO/CobP. This family consists of the BtuR, CobO,
CobP proteins all of which are Cob(I)alamin
adenosyltransferase, EC:2.5.1.17, involved in cobalamin
(vitamin B12) biosynthesis. These enzymes catalyze the
adenosylation reaction: ATP + cob(I)alamin + H2O <=>
phosphate + diphosphate + adenosylcobalamin.
Length = 172
Score = 27.0 bits (61), Expect = 6.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 109 DDLNVTLKYGIINRQHFLSDLL---DWQHLYVAGR 140
D+LN LKYG ++ + L L + QH+ + GR
Sbjct: 103 DELNYALKYGYLDLEEVLELLRNRPEGQHVVLTGR 137
>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate
dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
[Coenzyme metabolism].
Length = 283
Score = 27.1 bits (61), Expect = 6.8
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 155 ELSAAIH-LNLTSAVHAAL--LLLPEHFSEYDLLSTIT 189
EL A I LN V L L LP+H E LL I
Sbjct: 75 ELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAID 112
>gnl|CDD|218723 pfam05734, DUF832, Herpesvirus protein of unknown function
(DUF832). This family consists of several herpesvirus
proteins of unknown function.
Length = 228
Score = 27.3 bits (61), Expect = 7.0
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 149 HKLTNYELSAAIHLNLTSAVHAALLLLPEHFSEYDLLSTITNLSYSGDF 197
H Y + LTS + A+L SE+DL + + DF
Sbjct: 146 HTKHCYAENL-----LTSLYNQAVLGNSVSVSEFDLRDLVPDPDEFPDF 189
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 27.3 bits (61), Expect = 8.3
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 67 HSENLIRNNNHY--SF------LKYFGPGVLKKVQENYGSK 99
+E L N Y SF L+ PGV KK++E+Y
Sbjct: 524 EAERLFENAFDYDASFEIASQALEKVEPGVTKKIEESYEKT 564
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 27.4 bits (61), Expect = 8.5
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 149 HKLTNYELSAAIHLNLTSAVHAALLLLPEHFSE 181
+ TNY L+ A+ L T + +HF
Sbjct: 3011 REQTNYPLTLAVGLGDTLELE--FSYDRQHFDA 3041
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.400
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,691,529
Number of extensions: 1098278
Number of successful extensions: 964
Number of sequences better than 10.0: 1
Number of HSP's gapped: 960
Number of HSP's successfully gapped: 18
Length of query: 231
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 137
Effective length of database: 6,768,326
Effective search space: 927260662
Effective search space used: 927260662
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)