RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14466
(231 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 3e-05
Identities = 34/251 (13%), Positives = 82/251 (32%), Gaps = 54/251 (21%)
Query: 2 VSNLSNVTSKALTKHDFFQIILNQFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVN 61
++ ++ L+K + II+++ + F + ++ V+ +L +N
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW----TLLSKQEEMVQKFVEEVLRIN 90
Query: 62 DSEKFHSENLIRNNNHYSFL------KYFGPGVLKKVQENYGSKMYFNTHIPMDDLNVTL 115
Y FL + P ++ ++ ++Y N + NV+
Sbjct: 91 ----------------YKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-NDNQVFAKYNVSR 133
Query: 116 KYGIINRQHFLSDLLDWQHLYVAGRLH------KPVFTFHKLTNYELSAA----IH-LNL 164
+ + L +L V + K +Y++ I LNL
Sbjct: 134 LQPYLKLRQALLELRP--AKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 165 TSAVHAALLLLPEHFSEYDLLSTIT-----NLSYSGDFRMTFGENKNKIDNIVQGQLEQF 219
+ +L LL I +S + ++ + ++ +++ + +
Sbjct: 190 KNCNSPETVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 220 RLLYSPILDNI 230
LL +L N+
Sbjct: 246 CLL---VLLNV 253
Score = 37.1 bits (85), Expect = 0.004
Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 70/218 (32%)
Query: 68 SENLIRNNNHYSFLKYFGPGVLKKVQE--------NYGSKMY-----F--NTHIP----- 107
+E++ + K+ L + E KM+ F + HIP
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 108 -----------MDDLNVTLKYGIINRQ--HFLSDLLDWQHLYVAGRLHKP-VFTFHK--L 151
M +N KY ++ +Q + +Y+ ++ + H+ +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS---IYLELKVKLENEYALHRSIV 450
Query: 152 TNYELSAAIHLNLTSAV------------HAALLLLPEHFSEYDLLSTITNLSYSGDFRM 199
+Y + + H L EH L + + DFR
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHH---LKNIEHPERMTLFRMV----FL-DFR- 501
Query: 200 TFGENKNKIDNIVQGQ-------LEQFRLLYSP-ILDN 229
F E K + D+ L+Q + Y P I DN
Sbjct: 502 -FLEQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDN 537
Score = 31.7 bits (71), Expect = 0.20
Identities = 31/213 (14%), Positives = 59/213 (27%), Gaps = 87/213 (40%)
Query: 16 HDFFQIILNQFPTEYVVHAFGYGSGVFQQANKSSIKSMVDIILVVNDSEKFHSENLIRNN 75
+ + + EY +H +S+VD
Sbjct: 429 PSIYLELKVKLENEYALH-----------------RSIVD-------------------- 451
Query: 76 NHYSFLKYFGPGVLKKVQENYGSKMYFNTHIP--MDDLNVTLKYGIINRQHFLSDLLDW- 132
HY+ K F L + YF +HI + ++ + + R FL +
Sbjct: 452 -HYNIPKTFDSDDLIPPYLD----QYFYSHIGHHLKNIEHPERMTLF-RMVFLD--FRFL 503
Query: 133 ----QHLYVAGRLHKPVF-TFHKLTNYELSAAIHLNLTSAVHAALLLLPEHFSEYD---- 183
+H A + T +L Y+ + + D
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYK---------------------PYICDNDPKYE 542
Query: 184 -LLSTITNLSYSGDFRMTFGEN--KNKIDNIVQ 213
L++ I DF EN +K ++++
Sbjct: 543 RLVNAI------LDFLPKIEENLICSKYTDLLR 569
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.002
Identities = 34/142 (23%), Positives = 48/142 (33%), Gaps = 37/142 (26%)
Query: 59 VVNDSEKFHSENL------IRNNNHYSFLKYFGPGVLKKVQENYGSKMYFNTHIPMDDLN 112
V N ++ + I NN + +FG K+++ENY S M F T +D
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY-SAMIFET--IVDGKL 1701
Query: 113 VTLKYGIINRQHFLSDLLDWQHLYVAGRLHKPVFTFHKLTNYELSAAIHLNLTS-AVHAA 171
T K I + S ++ G L FT A+ L A
Sbjct: 1702 KTEK--IFKEINEHSTSYTFRS--EKGLLSATQFT---------QPAL-T-LMEKAAFED 1746
Query: 172 LL---LLPE------HFS--EY 182
L L+P H S EY
Sbjct: 1747 LKSKGLIPADATFAGH-SLGEY 1767
Score = 31.6 bits (71), Expect = 0.22
Identities = 29/163 (17%), Positives = 51/163 (31%), Gaps = 49/163 (30%)
Query: 19 FQI--ILNQFPTEYVVHAFGYGSGVFQQANKSSI--KSMVDIILVVNDSEKFHSENLIRN 74
F I I+ P +H FG G + N S++ +++VD K +E + +
Sbjct: 1659 FSILDIVINNPVNLTIH-FGGEKGKRIRENYSAMIFETIVD--------GKLKTEKIFKE 1709
Query: 75 -NNHYSFLKYFGP-GVLKKVQENYGSKMYFNTHIPMDDLNVTLKYGIIN--RQHFLSDLL 130
N H + + G+L Q T + ++ + L
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQ---------FTQPAL----TLMEKAAFEDLKSKGLIPAD 1756
Query: 131 DWQHLYVAGRLHKPVFTFHKLTNYELSAAIH----LNLTSAVH 169
AG H L E +A +++ S V
Sbjct: 1757 A----TFAG---------HSLG--EYAALASLADVMSIESLVE 1784
Score = 31.2 bits (70), Expect = 0.32
Identities = 34/251 (13%), Positives = 72/251 (28%), Gaps = 80/251 (31%)
Query: 8 VTSKALTKHDFFQIILNQFPTEYVVHAFGYGSGVFQQA--NKSSIKSMVDI--------- 56
++ + FF + + + F G +A N S S+++
Sbjct: 282 AIAETDSWESFFVSVR-----KAITVLFFIGV-RCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 57 --ILVVNDSEKFHSENLIRNNNHYSFL------------KYF---GP-----GV---LKK 91
+L +++ + ++ + N + K GP G+ L+K
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 92 VQENYGSKMYFNTHIPMDD---------LNVTLKYGIINRQH----------FLSDLLDW 132
+ G + IP + L V + H DL+
Sbjct: 396 AKAPSGLD---QSRIPFSERKLKFSNRFLPVASPF------HSHLLVPASDLINKDLVKN 446
Query: 133 QHLYVAGRLHKPVFTFHKLTNY-ELSAAIHLNL-----TSAVH--AALLLLPEHFSEYD- 183
+ A + PV+ ++ LS +I + V H ++
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Query: 184 -LLSTITNLSY 193
S + L++
Sbjct: 507 GGASGLGVLTH 517
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.30
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 89 LKKVQENYGS-KMYFNTHIPMDDLNVTLK 116
LKK+Q S K+Y + P + T++
Sbjct: 22 LKKLQ---ASLKLYADDSAPALAIKATME 47
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces
cerevisiae} PDB: 3onl_C
Length = 97
Score = 27.3 bits (60), Expect = 1.9
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 192 SYSGDFRMTFGENKNKIDNIVQGQLEQFR 220
SY DF+ T + K + L Q
Sbjct: 5 SYESDFKTTLEQAKASLAEAPSQPLSQRN 33
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta
sheet, isomerase; 1.60A {Escherichia coli}
Length = 217
Score = 26.8 bits (60), Expect = 5.6
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 126 LSDLLDWQHLYVAGRL 141
L + + Q +Y AGRL
Sbjct: 63 LKEFIPVQGVYAAGRL 78
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta
sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia
coli}
Length = 189
Score = 26.3 bits (59), Expect = 6.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 126 LSDLLDWQHLYVAGRL 141
L + + Q +Y AGRL
Sbjct: 35 LKEFIPVQGVYAAGRL 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.400
Gapped
Lambda K H
0.267 0.0565 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,453,862
Number of extensions: 197199
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 15
Length of query: 231
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 141
Effective length of database: 4,188,903
Effective search space: 590635323
Effective search space used: 590635323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.7 bits)