BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14468
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 63/95 (66%)
Query: 14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
L+ + +L +TF++VH+ M +PH I++FP + +R F+++ RH +L LGR QYDP K
Sbjct: 323 LTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKP 382
Query: 74 NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
NY+S+ LVS D FC +AK + + + FLK+L
Sbjct: 383 NYISLDKLVSIPDEIFCEEIAKASVQDFEKFLKTL 417
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 61/95 (64%)
Query: 14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
L+ + +L +TF+YVH+ M +PH I++FP + +R F+I+ RH +L LG+ QYDP K
Sbjct: 315 LTANKRKLTETFDYVHNVMNIPHHIIVKFPQVFNTRVFKIKERHLFLAYLGKAQYDPAKP 374
Query: 74 NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
NYVS+ VS D FC +AK + + FLK+L
Sbjct: 375 NYVSLDKFVSFPDEVFCKEIAKASVNDFEKFLKTL 409
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 60/95 (63%)
Query: 14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
L+ + +L + F+YVH+ M +PH I++FP + +R F+I+ RH +L LGR QYDP K
Sbjct: 318 LTANKRKLTEIFDYVHNVMNIPHHIIVKFPQLFNTRVFKIKERHLFLAYLGRAQYDPAKP 377
Query: 74 NYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
NYVS+ VS D FC +AK + + FLK+L
Sbjct: 378 NYVSLDKFVSFPDKIFCKEIAKASLNDFEKFLKTL 412
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%)
Query: 13 FLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCK 72
L+ L +TF+Y+H+ M +PH + FP + S+ RI+ RH +L LGR QYDP K
Sbjct: 310 ILTASKKRLRQTFDYLHNIMGIPHNMLTRFPQVFNSKLLRIKERHMFLIFLGRAQYDPTK 369
Query: 73 ENYVSMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
+Y+S+ LVS D FC +AK + + + FLK++
Sbjct: 370 PSYISLDQLVSLPDEVFCTEIAKASMQDFEKFLKTI 405
>sp|Q8BVN4|MTER2_MOUSE mTERF domain-containing protein 2 OS=Mus musculus GN=Mterfd2 PE=1
SV=1
Length = 346
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
L D EL F Y + M + H I+ N L +I+ RH YL+ LGR Q P K+
Sbjct: 223 LQEDPNELEYKFQYAYFRMGLTHLDIVRT-NFLQYSITKIKQRHIYLERLGRYQ-TPDKK 280
Query: 74 NYV-----SMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
S+++++ ++AEF A A ++ E + +F K L
Sbjct: 281 GQTQIPNPSLRNILRVSEAEFLARTACSSVEEFQVFKKLL 320
>sp|Q4G078|MTER2_RAT mTERF domain-containing protein 2 OS=Rattus norvegicus GN=Mterfd2
PE=2 SV=1
Length = 347
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKE 73
L D +EL F Y + M + H I+ + L +++ RH YL+ LGR Q P K+
Sbjct: 223 LQEDPSELEYKFQYAYFRMGLTHLDIVR-TDFLQYSIAKVKQRHIYLERLGRYQ-TPDKK 280
Query: 74 NYV-----SMKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
S+K+++ ++AEF A A ++ E + +F K L
Sbjct: 281 GQTQIPNPSLKNILRVSEAEFLARTACSSAEEFEVFKKLL 320
>sp|Q7Z6M4|MTER2_HUMAN mTERF domain-containing protein 2 OS=Homo sapiens GN=MTERFD2 PE=1
SV=3
Length = 381
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
Query: 17 DATELVKTFNYVHSDMKVPHERILEFPNILTSRRF-----RIENRHSYLKSLGRDQYDPC 71
D +L F Y + M + H P+I+ S +I+ RH YL+ LGR Q P
Sbjct: 226 DLGQLEYKFQYAYFRMGIKH------PDIVKSEYLQYSLTKIKQRHIYLERLGRYQ-TPD 278
Query: 72 KENYVS-----MKSLVSGTDAEFCANVAKTTPETYNLFLKSL 108
K+ +K ++ ++AEF A A T+ E + +F K L
Sbjct: 279 KKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLL 320
>sp|Q821E2|FOLKP_CHLCV Folate synthesis bifunctional protein OS=Chlamydophila caviae
(strain GPIC) GN=folKP PE=3 SV=1
Length = 447
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 26 NYVHSDMKVPHERILEFPNILT-------SRRFRIENRHSYLKSLGRDQY-DPCKENYVS 77
N+ D+K+PHERI E P +L+ +R F +LKS G + PC + +
Sbjct: 113 NHQQEDVKIPHERITERPFLLSLIASLCPTRIFHKPGSEYHLKSFGEIAHLLPCPQEMI- 171
Query: 78 MKSLVSGTDAEFCANVAKTTPETYNLFLKS 107
+ S T NV + L+L++
Sbjct: 172 LNSFSPNTLLMGVVNVTDNSISDEGLYLEA 201
>sp|Q99369|FSH3_YEAST Family of serine hydrolases 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=FSH3 PE=1 SV=1
Length = 266
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 60 LKSLGRDQYDPCKENYVSMKSLVS-----GTDAEFCANVAKTTPETYNLFLKS 107
LK LG D Y PC + + K+L G DA N + T+ E Y F ++
Sbjct: 31 LKKLGYDLYYPCAPHSIDKKALFQSESEKGRDAAKEFNTSATSDEVYGWFFRN 83
>sp|P84199|NEKL4_CAEEL Serine/threonine-protein kinase D1044.8 OS=Caenorhabditis elegans
GN=nekl-4 PE=3 SV=2
Length = 981
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 8 ALQAIFLS-LDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYL 60
AL+ IF++ L+ E K+F + S++K+ ++ L PNI+ RR +EN Y+
Sbjct: 486 ALKEIFMTNLNDRESDKSFGDMISEVKIIKQQ-LRHPNIVRYRRIFVENHRLYI 538
>sp|B8CZG8|VATA_HALOH V-type ATP synthase alpha chain OS=Halothermothrix orenii (strain H
168 / OCM 544 / DSM 9562) GN=atpA PE=3 SV=1
Length = 590
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 42 FPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDAEFCANVAKTTPETY 101
FP L SR R Y+K+LG+D +E +S+ VS +F V + T
Sbjct: 356 FPAYLPSRLAEFYERAGYVKTLGQD-----REGSISLIGAVSPPGGDFSEPVTQNTKRYV 410
Query: 102 NLF 104
F
Sbjct: 411 RCF 413
>sp|Q9JRZ6|Y1133_NEIMB Putative ankyrin repeat protein NMB1133/NMB1171 OS=Neisseria
meningitidis serogroup B (strain MC58) GN=NMB1133 PE=4
SV=1
Length = 253
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 37 ERILEFP---NILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDAEFCANV 93
E + E P N + R ++ YL+ D Y P ++ +L+ E+ AN
Sbjct: 164 ENLEEHPMCRNCIDDFRQQLSQNSDYLREQDEDGYTPLHHEAIAGNALMVQAMLEYGANP 223
Query: 94 AKTTPETY 101
A TT E Y
Sbjct: 224 ASTTSEGY 231
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,115,055
Number of Sequences: 539616
Number of extensions: 1205451
Number of successful extensions: 2661
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2653
Number of HSP's gapped (non-prelim): 16
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)