Query psy14468
Match_columns 108
No_of_seqs 93 out of 111
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 20:38:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fp9_B Mterf domain-containing 100.0 1.2E-33 4.2E-38 227.3 9.4 98 10-108 173-274 (335)
2 3m66_A Mterf3, mterf domain-co 100.0 1.9E-28 6.5E-33 187.4 9.8 99 10-108 172-270 (270)
3 4fzv_B Mterf domain-containing 99.9 1.1E-24 3.8E-29 164.8 9.2 96 11-108 129-229 (239)
4 3mva_O Transcription terminati 99.6 2.2E-15 7.4E-20 119.2 8.4 81 9-97 263-343 (343)
5 3m66_A Mterf3, mterf domain-co 97.6 6.3E-05 2.1E-09 56.9 5.3 58 9-66 135-197 (270)
6 3mva_O Transcription terminati 96.8 0.0025 8.6E-08 49.9 6.1 56 11-66 226-288 (343)
7 4fp9_B Mterf domain-containing 96.2 0.0077 2.6E-07 48.1 5.8 50 10-60 102-155 (335)
8 2jt1_A PEFI protein; solution 68.2 11 0.00039 23.7 4.9 64 16-82 1-70 (77)
9 4fzv_B Mterf domain-containing 47.2 15 0.00052 27.4 3.2 35 32-66 43-81 (239)
10 2dce_A KIAA1915 protein; swirm 41.2 19 0.00065 24.4 2.7 28 48-75 82-109 (111)
11 1und_A Advillin, P92; actin bi 38.2 28 0.00096 19.3 2.6 19 84-103 3-21 (37)
12 1wy3_A Villin; structural prot 37.0 31 0.001 19.0 2.6 18 85-103 2-19 (35)
13 2w7n_A TRFB transcriptional re 30.8 53 0.0018 21.7 3.6 79 1-90 5-85 (101)
14 2fq3_A Transcription regulator 30.8 22 0.00077 23.9 1.7 24 46-69 77-100 (104)
15 2hbp_A Cytoskeleton assembly c 28.8 9.5 0.00032 24.2 -0.5 26 75-101 40-65 (68)
16 1qzp_A Dematin; villin headpie 23.9 58 0.002 20.2 2.6 20 83-103 33-52 (68)
No 1
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=227.33 Aligned_cols=98 Identities=31% Similarity=0.388 Sum_probs=94.2
Q ss_pred hHhhhhcChhhHHHHHHHHHHhhCCChhhHhhhhhhhhccHHHHHHHHHHHHHhCCcCCCCCCCC----cccccccccCC
Q psy14468 10 QAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKEN----YVSMKSLVSGT 85 (108)
Q Consensus 10 ~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s~~~Ir~RH~FL~~LGr~qyDP~~p~----y~~L~~lv~~~ 85 (108)
.|+||..+.+.|++||+|++++||+++.+|++ |++|+||+.|||+||.||++||+|||+|++|+ ||+|++||++|
T Consensus 173 ~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLeRIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~s 251 (335)
T 4fp9_B 173 CPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLTKIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVS 251 (335)
T ss_dssp CGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHHHHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSC
T ss_pred CChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHHHHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCC
Confidence 59999999999999999999999999999998 89999999999999999999999999999987 45799999999
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhC
Q psy14468 86 DAEFCANVAKTTPETYNLFLKSL 108 (108)
Q Consensus 86 D~~F~~~vA~~s~eey~~FlKtl 108 (108)
|++||++||++|+|+|++|+|||
T Consensus 252 d~~F~~~vA~~s~eey~~F~k~~ 274 (335)
T 4fp9_B 252 EAEFLARTACTSVEEFQVFKKLL 274 (335)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999985
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.95 E-value=1.9e-28 Score=187.42 Aligned_cols=99 Identities=40% Similarity=0.801 Sum_probs=97.2
Q ss_pred hHhhhhcChhhHHHHHHHHHHhhCCChhhHhhhhhhhhccHHHHHHHHHHHHHhCCcCCCCCCCCcccccccccCChHHH
Q psy14468 10 QAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDAEF 89 (108)
Q Consensus 10 ~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s~~~Ir~RH~FL~~LGr~qyDP~~p~y~~L~~lv~~~D~~F 89 (108)
.|.+|..+.++|.++++|++++||+++++|+++|.+|.+|++||++||.||+.||+.++||++++|++|.+++..||++|
T Consensus 172 ~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sleri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F 251 (270)
T 3m66_A 172 IPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIF 251 (270)
T ss_dssp CGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHHHHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHH
T ss_pred CChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhhC
Q psy14468 90 CANVAKTTPETYNLFLKSL 108 (108)
Q Consensus 90 ~~~vA~~s~eey~~FlKtl 108 (108)
++++|++|+|||++|+|||
T Consensus 252 ~~~~~~~~~eey~~f~k~~ 270 (270)
T 3m66_A 252 CEEIAKASVQDFEKFLKTL 270 (270)
T ss_dssp HHHTTCSCHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999997
No 3
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=164.80 Aligned_cols=96 Identities=32% Similarity=0.429 Sum_probs=91.9
Q ss_pred HhhhhcChhhHHHHHHHHHHhhCCChhhHhhhhhhhhccHHHHHHHHHHHHHhCCcCCCCCCCC-----cccccccccCC
Q psy14468 11 AIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKEN-----YVSMKSLVSGT 85 (108)
Q Consensus 11 ~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s~~~Ir~RH~FL~~LGr~qyDP~~p~-----y~~L~~lv~~~ 85 (108)
|.++-.|-..|++||+|.+++|||.|.+|+++ +++.+|+.+|++||.+|++|||+|+ |++.+ ||-|++|+..+
T Consensus 129 psvlredlgqleykfqyayfrmgikhpdivks-eylqysltkikqrhiylerlgryqt-pdkkgqtqipnpllkdilrvs 206 (239)
T 4fzv_B 129 PSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLTKIKQRHIYLERLGRYQT-PDKKGQTQIPNPLLKDILRVS 206 (239)
T ss_dssp GGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHHHHHHHHHHHHHHTCCCC-CCSSSCCSSCCCCHHHHHTSC
T ss_pred cHHHHHHHhhhhhhHhHHHHHccCCCcchhHH-HHHHHHHHHHHHHHhHHHHhcccCC-CCccCCccCCChHHHHHHHHh
Confidence 67888999999999999999999999999999 9999999999999999999999999 88875 89999999999
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhC
Q psy14468 86 DAEFCANVAKTTPETYNLFLKSL 108 (108)
Q Consensus 86 D~~F~~~vA~~s~eey~~FlKtl 108 (108)
+++|..+.|++|+|||.+|+|.|
T Consensus 207 eaeflartactsveefqvfkkll 229 (239)
T 4fzv_B 207 EAEFLARTACTSVEEFQVFKKLL 229 (239)
T ss_dssp HHHHHHHTSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999999999999975
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=99.60 E-value=2.2e-15 Score=119.16 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=72.2
Q ss_pred HhHhhhhcChhhHHHHHHHHHHhhCCChhhHhhhhhhhhccHHHHHHHHHHHHHhCCcCCCCCCCCcccccccccCChHH
Q psy14468 9 LQAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDAE 88 (108)
Q Consensus 9 ~~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s~~~Ir~RH~FL~~LGr~qyDP~~p~y~~L~~lv~~~D~~ 88 (108)
-.|.+|..+.+.|.++++|+++ ||+++++|+++|++|.+|+++|++||+||++.|. ||..++ ..+++.||++
T Consensus 263 ~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sleri~~R~~~L~~~g~---~~~~~~----~~~l~~s~~~ 334 (343)
T 3mva_O 263 SYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSISTLKSRIKELVNAGC---NLSTLN----ITLLSWSKKR 334 (343)
T ss_dssp TCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHHHHHHHHHHHHTTTC---CSSSSC----GGGGGSCHHH
T ss_pred hCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHHHHHHHHHHHHHCCC---CCCCCc----chhhcCCHHH
Confidence 3589999999999999999999 9999999999999999999999999999999884 454332 1899999999
Q ss_pred HHHHHhcCC
Q psy14468 89 FCANVAKTT 97 (108)
Q Consensus 89 F~~~vA~~s 97 (108)
|++++++.+
T Consensus 335 F~~~~~~~~ 343 (343)
T 3mva_O 335 YEAKLKKLS 343 (343)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHhccC
Confidence 999999864
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=97.65 E-value=6.3e-05 Score=56.90 Aligned_cols=58 Identities=10% Similarity=0.278 Sum_probs=52.6
Q ss_pred HhHhhhhcChhhHHHHHHHHHHhhCCChhhH----hhhhhhhhccHHHHHHHHHHH-HHhCCc
Q psy14468 9 LQAIFLSLDATELVKTFNYVHSDMKVPHERI----LEFPNILTSRRFRIENRHSYL-KSLGRD 66 (108)
Q Consensus 9 ~~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I----~k~P~~l~~s~~~Ir~RH~FL-~~LGr~ 66 (108)
..|+++..+.+.+.++++|+..+||++.++| .++|++|.+|..+|+++..|| ..+|.-
T Consensus 135 ~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~ 197 (270)
T 3m66_A 135 RLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIP 197 (270)
T ss_dssp HSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCC
T ss_pred hCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999999999999999987 689999999999999999999 458873
No 6
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=96.77 E-value=0.0025 Score=49.93 Aligned_cols=56 Identities=13% Similarity=0.286 Sum_probs=47.1
Q ss_pred HhhhhcChhhHHHHHHHHHH---hhCCChhhH----hhhhhhhhccHHHHHHHHHHHHHhCCc
Q psy14468 11 AIFLSLDATELVKTFNYVHS---DMKVPHERI----LEFPNILTSRRFRIENRHSYLKSLGRD 66 (108)
Q Consensus 11 ~~ll~~~~~~L~~kf~Y~~~---~M~i~~~~I----~k~P~~l~~s~~~Ir~RH~FL~~LGr~ 66 (108)
|.+|....+.+.+++.|+.+ .+|++.++| .++|++|.+|.+.|+.+-+||..+|.-
T Consensus 226 ~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~mg~~ 288 (343)
T 3mva_O 226 AEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENIS 288 (343)
T ss_dssp GGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHTTTCC
T ss_pred hHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHHcCCC
Confidence 45666666777788888777 689998876 899999999999999999999988873
No 7
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=96.20 E-value=0.0077 Score=48.11 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=24.5
Q ss_pred hHhhhhcChhhHHHHHHHHHHhhCCChhh----HhhhhhhhhccHHHHHHHHHHH
Q psy14468 10 QAIFLSLDATELVKTFNYVHSDMKVPHER----ILEFPNILTSRRFRIENRHSYL 60 (108)
Q Consensus 10 ~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~----I~k~P~~l~~s~~~Ir~RH~FL 60 (108)
.|.||..+.++|.++..|+.. +|++.++ |.++|++|.++..+|+.+-.||
T Consensus 102 ~P~lL~~s~e~L~~~l~fL~~-lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L 155 (335)
T 4fp9_B 102 SPQLLKLPIMQMRKRSSYLQK-LGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLL 155 (335)
T ss_dssp CGGGGGSCHHHHHHHHHHHHH-TTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHHH
T ss_pred ChhhccCCHHHHHHHHHHHHH-cCCCHHHHHHHHHhCchhhccChHHHHHHHHHH
Confidence 344555555555555555533 5554332 4445555555555555555544
No 8
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=68.15 E-value=11 Score=23.65 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=50.6
Q ss_pred cChhhHHHHHHHHHHh------hCCChhhHhhhhhhhhccHHHHHHHHHHHHHhCCcCCCCCCCCcccccccc
Q psy14468 16 LDATELVKTFNYVHSD------MKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLV 82 (108)
Q Consensus 16 ~~~~~L~~kf~Y~~~~------M~i~~~~I~k~P~~l~~s~~~Ir~RH~FL~~LGr~qyDP~~p~y~~L~~lv 82 (108)
|+.+.....++||... ...+..||++. |..|..-|+.-=..|++-|...-+|.+++-+....|+
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~---lgvS~~TVrr~L~~Le~kG~I~R~~ggr~~~~~~~~~ 70 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDDGAPVKTRDIADA---AGLSIYQVRLYLEQLHDVGVLEKVNAGKGVPGLWRLL 70 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTTSCEEHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEEESCSSSSCCEEEEC
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCcCHHHHHHH---HCCCHHHHHHHHHHHHHCCcEEecCCCCCcHHHHHHH
Confidence 4566788889999888 77779999876 4557777888889999999998888887766655554
No 9
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=47.19 E-value=15 Score=27.37 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=30.0
Q ss_pred hCCChhh----HhhhhhhhhccHHHHHHHHHHHHHhCCc
Q psy14468 32 MKVPHER----ILEFPNILTSRRFRIENRHSYLKSLGRD 66 (108)
Q Consensus 32 M~i~~~~----I~k~P~~l~~s~~~Ir~RH~FL~~LGr~ 66 (108)
+|++++- +.++|+.+....-.+|-|..+|+.||.-
T Consensus 43 lglnpepvcvvlkkspqllklpimqmrkrssylqklglg 81 (239)
T 4fzv_B 43 LGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLG 81 (239)
T ss_dssp HCCCTTHHHHHHHSCGGGGTSCHHHHHHHHHHHHHHTTC
T ss_pred hcCCCCceEEEecCCHHHhcChHHHHHHHHHHHHHhCCC
Confidence 5666553 4689999999999999999999999985
No 10
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.19 E-value=19 Score=24.41 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHHHHHhCCcCCCCCCCCc
Q psy14468 48 SRRFRIENRHSYLKSLGRDQYDPCKENY 75 (108)
Q Consensus 48 ~s~~~Ir~RH~FL~~LGr~qyDP~~p~y 75 (108)
.....|..=|.||++-|...|...+..|
T Consensus 82 gDv~~i~RVh~FLe~wGLIN~~~~~~~~ 109 (111)
T 2dce_A 82 GDVNCIGRIHTYLELIGAINFGCEQAVY 109 (111)
T ss_dssp SCHHHHHHHHHHHHHHSSSSCSCTTSSS
T ss_pred cCHHHHHHHHHHHHHcCeeecCCChhhc
Confidence 3477788889999999999997776655
No 11
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=38.17 E-value=28 Score=19.32 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=15.7
Q ss_pred CChHHHHHHHhcCCHHHHHH
Q psy14468 84 GTDAEFCANVAKTTPETYNL 103 (108)
Q Consensus 84 ~~D~~F~~~vA~~s~eey~~ 103 (108)
.||++|. .|=+.|-+||+.
T Consensus 3 Lsd~dF~-~vFgmsr~eF~~ 21 (37)
T 1und_A 3 LSEQDFV-SVFGITRGQFAA 21 (37)
T ss_dssp CCHHHHH-HHHSSCHHHHHH
T ss_pred CCHHHHH-HHHCcCHHHHHH
Confidence 5899999 666889999875
No 12
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=37.02 E-value=31 Score=18.97 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.8
Q ss_pred ChHHHHHHHhcCCHHHHHH
Q psy14468 85 TDAEFCANVAKTTPETYNL 103 (108)
Q Consensus 85 ~D~~F~~~vA~~s~eey~~ 103 (108)
||++|. .|=+.|-+||+.
T Consensus 2 sd~dF~-~vFgmsr~eF~~ 19 (35)
T 1wy3_A 2 SDEDFK-AVFGMTRSAFAN 19 (35)
T ss_dssp CHHHHH-HHHSSCHHHHHH
T ss_pred CHHHHH-HHHCCCHHHHHH
Confidence 799998 566789999875
No 13
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=30.79 E-value=53 Score=21.69 Aligned_cols=79 Identities=8% Similarity=0.004 Sum_probs=50.1
Q ss_pred CccchhHHHhHhhhhcChhhHHHHHHHHHHhhCCChhhHhhhhhhhhccHHHHHHHHH--HHHHhCCcCCCCCCCCcccc
Q psy14468 1 MTRSTSTALQAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHS--YLKSLGRDQYDPCKENYVSM 78 (108)
Q Consensus 1 ~~~~~~~~~~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s~~~Ir~RH~--FL~~LGr~qyDP~~p~y~~L 78 (108)
||.+--+++.|.+ .-..+.-+--++|.+-|.++.+|++-.++=+....++-.|-. |.. + .-.||++..
T Consensus 5 mT~~eFe~~~~~l---~~~~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~~--~-----~~P~g~~rv 74 (101)
T 2w7n_A 5 LTESQFQEAIQGL---EVGQQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFED--K-----NLPEGYARV 74 (101)
T ss_dssp CCHHHHHHHHTTC---CCCHHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH--T-----CCCTTEEEE
T ss_pred CCHHHHHHHHccC---ChHHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHhc--c-----CCCCCeeEE
Confidence 3444444455544 556677888899999999999999998876666666544432 322 1 122567666
Q ss_pred cccccCChHHHH
Q psy14468 79 KSLVSGTDAEFC 90 (108)
Q Consensus 79 ~~lv~~~D~~F~ 90 (108)
.-.+ +++..|-
T Consensus 75 ~v~l-P~~~a~~ 85 (101)
T 2w7n_A 75 TAVL-PEHQAYI 85 (101)
T ss_dssp EEEE-CHHHHHH
T ss_pred eeec-CHHHHHH
Confidence 5555 5555554
No 14
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=30.77 E-value=22 Score=23.90 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=19.2
Q ss_pred hhccHHHHHHHHHHHHHhCCcCCC
Q psy14468 46 LTSRRFRIENRHSYLKSLGRDQYD 69 (108)
Q Consensus 46 l~~s~~~Ir~RH~FL~~LGr~qyD 69 (108)
+......|..=|.||++-|...|.
T Consensus 77 l~gDv~~i~RVh~FLe~wGLIN~~ 100 (104)
T 2fq3_A 77 VSGDAAALFRLHKFLTKWGLINYQ 100 (104)
T ss_dssp SCSCHHHHHHHHHHHHHTTSSSSC
T ss_pred ccccHHHHHHHHHHHHHcCeeccC
Confidence 334477788889999999999873
No 15
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=28.77 E-value=9.5 Score=24.23 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=22.1
Q ss_pred cccccccccCChHHHHHHHhcCCHHHH
Q psy14468 75 YVSMKSLVSGTDAEFCANVAKTTPETY 101 (108)
Q Consensus 75 y~~L~~lv~~~D~~F~~~vA~~s~eey 101 (108)
.||+.+ ++..|-+|++++.+.|+++|
T Consensus 40 ~VP~~k-lS~~D~~yve~~~g~sl~~~ 65 (68)
T 2hbp_A 40 AVAADK-LSNEDLAYVEKITGFSLEKF 65 (68)
T ss_dssp EEETTS-BCHHHHHHHHHHHSCCCGGG
T ss_pred EeEhHH-cCHHHHHHHHHHhccccccc
Confidence 567777 56889999999999999886
No 16
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=23.90 E-value=58 Score=20.19 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=16.7
Q ss_pred cCChHHHHHHHhcCCHHHHHH
Q psy14468 83 SGTDAEFCANVAKTTPETYNL 103 (108)
Q Consensus 83 ~~~D~~F~~~vA~~s~eey~~ 103 (108)
-.||++|. .|=+.|-+||+.
T Consensus 33 yLsdedF~-~vFgmsr~eF~~ 52 (68)
T 1qzp_A 33 HLSAEDFS-RVFAMSPEEFGK 52 (68)
T ss_dssp GBCHHHHH-HHSSSCHHHHHH
T ss_pred hCCHHHHH-HHHCcCHHHHHH
Confidence 46899999 677889999975
Done!