Query psy14468
Match_columns 108
No_of_seqs 93 out of 111
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 20:38:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14468.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14468hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1unda_ a.14.1.1 (A:) Advillin 40.1 12 0.00087 19.5 2.6 19 84-103 2-20 (36)
2 d1kuqa_ a.16.1.2 (A:) Ribosoma 38.5 8.6 0.00063 23.3 2.2 49 5-67 20-71 (84)
3 d1yu8x1 a.14.1.1 (X:42-76) Vil 31.3 15 0.0011 18.9 2.1 19 84-103 1-19 (35)
4 d1ow5a_ a.60.1.2 (A:) Serine/t 30.2 5.7 0.00042 22.0 0.2 47 58-105 5-53 (60)
5 d1dxsa_ a.60.1.2 (A:) C-termin 29.3 7.9 0.00058 21.5 0.8 34 57-90 3-38 (57)
6 d1ug2a_ a.4.1.3 (A:) 2610100b2 26.1 38 0.0028 21.0 3.8 47 13-63 35-83 (95)
7 d1y74a1 a.194.1.1 (A:17-73) Li 21.9 20 0.0014 20.5 1.6 28 7-34 29-56 (57)
8 d1k8ba_ d.241.1.1 (A:) Transla 21.3 9.2 0.00067 21.2 -0.0 28 15-42 4-31 (52)
9 d1a32a_ a.16.1.2 (A:) Ribosoma 21.0 31 0.0023 20.6 2.5 48 5-66 21-71 (85)
10 d1qzpa_ a.14.1.1 (A:) Dematin 20.9 34 0.0025 20.0 2.6 20 83-103 33-52 (68)
No 1
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.09 E-value=12 Score=19.50 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=15.8
Q ss_pred CChHHHHHHHhcCCHHHHHH
Q psy14468 84 GTDAEFCANVAKTTPETYNL 103 (108)
Q Consensus 84 ~~D~~F~~~vA~~s~eey~~ 103 (108)
.||++|. .|=+.|-+||+.
T Consensus 2 Lsd~dF~-~vFgmsr~eF~~ 20 (36)
T d1unda_ 2 LSEQDFV-SVFGITRGQFAA 20 (36)
T ss_dssp CCHHHHH-HHHSSCHHHHHH
T ss_pred CCHHHHH-HHHCcCHHHHHH
Confidence 5899998 777889999875
No 2
>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]}
Probab=38.53 E-value=8.6 Score=23.34 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=35.4
Q ss_pred hhHHHhHhhhhcChhhHHHHHHHHHHhhCCChhhHhhhhhhhhcc---HHHHHHHHHHHHHhCCcC
Q psy14468 5 TSTALQAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSR---RFRIENRHSYLKSLGRDQ 67 (108)
Q Consensus 5 ~~~~~~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s---~~~Ir~RH~FL~~LGr~q 67 (108)
.|.+.|..+|+.....|++- | .++|.-..++ ..-|-.|..+|.+|.+-.
T Consensus 20 GS~evQiA~lT~rI~~L~~H-------l-------k~~kkD~~s~rgL~~lv~kRkklL~YLrk~d 71 (84)
T d1kuqa_ 20 GSTEVQVALLTLRINRLSEH-------L-------KVHKKDHHSHRGLLMMVGQRRRLLRYLQRED 71 (84)
T ss_dssp SSHHHHHHHHHHHHHHHHHH-------H-------HHTTTCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHH-------H-------HHCccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 47788999988777777653 3 4555555553 567889999999998843
No 3
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=31.31 E-value=15 Score=18.94 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.0
Q ss_pred CChHHHHHHHhcCCHHHHHH
Q psy14468 84 GTDAEFCANVAKTTPETYNL 103 (108)
Q Consensus 84 ~~D~~F~~~vA~~s~eey~~ 103 (108)
.||++|. .|=+.|-+||..
T Consensus 1 Lsd~dF~-~vfgmsr~eF~~ 19 (35)
T d1yu8x1 1 LSDEDFK-AVFGMTRSAFAN 19 (35)
T ss_dssp SCHHHHH-HHHSSCHHHHHT
T ss_pred CCHHHHH-HHHCCCHHHHHH
Confidence 3789998 677888888864
No 4
>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.22 E-value=5.7 Score=21.95 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=34.1
Q ss_pred HHHHHhCCcCCCCC--CCCcccccccccCChHHHHHHHhcCCHHHHHHHH
Q psy14468 58 SYLKSLGRDQYDPC--KENYVSMKSLVSGTDAEFCANVAKTTPETYNLFL 105 (108)
Q Consensus 58 ~FL~~LGr~qyDP~--~p~y~~L~~lv~~~D~~F~~~vA~~s~eey~~Fl 105 (108)
.||..+|.-+|-|. +-+|+++..|...++++.. ++.-+++..=...+
T Consensus 5 ~wL~~lgL~~Y~~~F~~~~~i~~~~l~~l~~~dL~-~lGI~~~ghr~ril 53 (60)
T d1ow5a_ 5 LFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILI-ALGVNKIGDRLKIL 53 (60)
T ss_dssp HHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHH-HHTCCCHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHcCCCcHHHHHhCCHHHHH-HcCCCCHHHHHHHH
Confidence 68999999988554 2358999999999999874 56555655444433
No 5
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.29 E-value=7.9 Score=21.47 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=26.2
Q ss_pred HHHHHHhCCcCCCC--CCCCcccccccccCChHHHH
Q psy14468 57 HSYLKSLGRDQYDP--CKENYVSMKSLVSGTDAEFC 90 (108)
Q Consensus 57 H~FL~~LGr~qyDP--~~p~y~~L~~lv~~~D~~F~ 90 (108)
..||..+|.-||=+ .+-+|.+++.+..-++++.-
T Consensus 3 ~~wL~~lgL~~Y~~~F~~~G~~~l~~l~~lt~eDL~ 38 (57)
T d1dxsa_ 3 VSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLG 38 (57)
T ss_dssp HHHHHHTTCTTSHHHHHTTTCCCHHHHHTCCHHHHH
T ss_pred HHHHHHCCcHHHHHHHHHccCCcHHHHHHhhHHHHH
Confidence 36899999999832 23458889998888888775
No 6
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.08 E-value=38 Score=20.95 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=27.1
Q ss_pred hhhcChhhHH-HHHHHHHHhhCCChhhHhhhhhhhh-ccHHHHHHHHHHHHHh
Q psy14468 13 FLSLDATELV-KTFNYVHSDMKVPHERILEFPNILT-SRRFRIENRHSYLKSL 63 (108)
Q Consensus 13 ll~~~~~~L~-~kf~Y~~~~M~i~~~~I~k~P~~l~-~s~~~Ir~RH~FL~~L 63 (108)
.|+.+.|++. .. +.++|-..+....--..|. =+...||.||++|.+|
T Consensus 35 ~WTrEEDriIL~~----~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~l 83 (95)
T d1ug2a_ 35 LWTREADRVILTM----CQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHH----HHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH----HHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3555555543 22 3456633333333334463 3489999999999876
No 7
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.85 E-value=20 Score=20.52 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=22.3
Q ss_pred HHHhHhhhhcChhhHHHHHHHHHHhhCC
Q psy14468 7 TALQAIFLSLDATELVKTFNYVHSDMKV 34 (108)
Q Consensus 7 ~~~~~~ll~~~~~~L~~kf~Y~~~~M~i 34 (108)
.+||..+-..--..+.+-|+++|.+..|
T Consensus 29 ~aLqkVLqSdF~~avREVYehvyeTvdi 56 (57)
T d1y74a1 29 QALQRVLQSRFCSAIREVYEQLYDTLDI 56 (57)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 5677777777777889999999988765
No 8
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.33 E-value=9.2 Score=21.22 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=22.0
Q ss_pred hcChhhHHHHHHHHHHhhCCChhhHhhh
Q psy14468 15 SLDATELVKTFNYVHSDMKVPHERILEF 42 (108)
Q Consensus 15 ~~~~~~L~~kf~Y~~~~M~i~~~~I~k~ 42 (108)
.+.++-+..+|.=+...|+-+++.+.++
T Consensus 4 ~EGkkTvi~Nf~eI~~~L~R~p~hv~kf 31 (52)
T d1k8ba_ 4 IEGNRTIIRNFRELAKAVNRDEEFFAKY 31 (52)
T ss_dssp EETTEEEECCHHHHHHHHHTCHHHHHHH
T ss_pred EecceEeeecHHHHHHHhCCCHHHHHHH
Confidence 3444455678888999999999999998
No 9
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.04 E-value=31 Score=20.62 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=32.6
Q ss_pred hhHHHhHhhhhcChhhHHHHHHHHHHhhCCChhhHhhhhhhhhcc---HHHHHHHHHHHHHhCCc
Q psy14468 5 TSTALQAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSR---RFRIENRHSYLKSLGRD 66 (108)
Q Consensus 5 ~~~~~~~~ll~~~~~~L~~kf~Y~~~~M~i~~~~I~k~P~~l~~s---~~~Ir~RH~FL~~LGr~ 66 (108)
.|.+.|..+|+.....|++- |. .+|.-..++ ..-|-.|..+|.+|.+-
T Consensus 21 GS~evQiA~lT~rI~~L~~H-------lk-------~~kkD~~srrgL~~lv~~RrklL~YLrk~ 71 (85)
T d1a32a_ 21 GSPEVQIAILTEQINNLNEH-------LR-------VHKKDHHSRRGLLKMVGKRRRLLAYLRNK 71 (85)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-------HH-------HCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhhHHHHHHHHHH-------HH-------HCccccccHHHHHHHHHHHHHHHHHHHhc
Confidence 47788999888777766653 32 344444443 55678899999988774
No 10
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.94 E-value=34 Score=19.96 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=16.7
Q ss_pred cCChHHHHHHHhcCCHHHHHH
Q psy14468 83 SGTDAEFCANVAKTTPETYNL 103 (108)
Q Consensus 83 ~~~D~~F~~~vA~~s~eey~~ 103 (108)
..||++|. .|=+.|-+||+.
T Consensus 33 yLsd~dF~-~vFgms~~eF~~ 52 (68)
T d1qzpa_ 33 HLSAEDFS-RVFAMSPEEFGK 52 (68)
T ss_dssp GBCHHHHH-HHSSSCHHHHHH
T ss_pred hCCHHHHH-HHHCcCHHHHHH
Confidence 46899999 777889999975
Done!