RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14468
(108 letters)
>gnl|CDD|197848 smart00733, Mterf, Mitochondrial termination factor repeats.
Human mitochondrial termination factor is a DNA-binding
protein that acts as a transcription termination
factor. Six repeats occur in human mTERF, that also are
present in numerous plant proteins.
Length = 31
Score = 29.3 bits (67), Expect = 0.040
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 39 ILEFPNILTSRRFRIENRHSYLKSLGRD 66
+ +FP IL +++ + +LK LG
Sbjct: 4 VKKFPQILGYSEKKLKPKVEFLKELGFS 31
>gnl|CDD|224448 COG1531, COG1531, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 77
Score = 27.0 bits (60), Expect = 0.84
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 3 RSTSTALQAIFLSLDATELVKTFNYVHSDMKVPHERILE 41
R L+ I D E V F ++ +P+ RI+E
Sbjct: 27 RGEEEGLREI--PGDDIEEVGRFYLLYQGTYIPYHRIVE 63
>gnl|CDD|217090 pfam02536, mTERF, mTERF. This family contains one sequence of
known function Human mitochondrial transcription
termination factor (mTERF) the rest of the family
consists of hypothetical proteins none of which have any
functional information. mTERF is a multizipper protein
possessing three putative leucine zippers one of which
is bipartite. The protein binds DNA as a monomer. The
leucine zippers are not implicated in a dimerisation
role as in other leucine zippers.
Length = 345
Score = 27.8 bits (62), Expect = 0.98
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 10 QAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILT----SRRFRIENRHSYLKSLGR 65
Q + LS++ + K ++ +M P + ++EFP + R N L S G+
Sbjct: 269 QLLGLSVEK--VKKKTEFLVKEMNWPLKELVEFPQVFGYSLEKRIKPRCNVVKALMSKGK 326
Query: 66 DQYDPCKENYVSMKSLVSGTDAEFCA 91
S+ S++ TD EF
Sbjct: 327 SI-------LPSLSSMLKCTDEEFLQ 345
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 26.0 bits (58), Expect = 4.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 57 HSYLKSLGRDQYDPC 71
H+YLK +GR +Y
Sbjct: 320 HAYLKDIGRVEYVTA 334
>gnl|CDD|235467 PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase;
Reviewed.
Length = 299
Score = 25.9 bits (58), Expect = 5.2
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 7/24 (29%)
Query: 16 LDATELVKTFNYVHSDMKVPHERI 39
LDA+E TF VP E +
Sbjct: 79 LDASECPPTFG-------VPPELV 95
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport
and metabolism].
Length = 396
Score = 25.6 bits (57), Expect = 5.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 57 HSYLKSLGRDQYDP 70
H+YLK +GR +Y
Sbjct: 313 HAYLKDIGRAEYVS 326
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase
inhibitor.
Length = 541
Score = 25.7 bits (56), Expect = 6.0
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 29 HSDMKVPHERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVS 77
S + R+L FP ++ + RI L+S G D+YDP + V+
Sbjct: 193 RSTKGTKNRRLLGFPKWVSKKDRRI------LQSDGYDEYDPSEVLVVA 235
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 25.4 bits (56), Expect = 6.3
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 14 LSLDATELVKTFNYVHSDMKVPHERILEFPNILT-SRRFRIENRHSYLKSLG 64
L+L+ + + + +MK P + ++EFP T RI+ R+ + G
Sbjct: 368 LALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKG 419
>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.
Length = 397
Score = 25.4 bits (57), Expect = 7.5
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 13/32 (40%)
Query: 57 HSYLKSLGRDQYDPCKENYVSMKSLVSGTDAE 88
H+YLK +GR +Y VS TD E
Sbjct: 316 HAYLKDIGRAEY-------------VSITDDE 334
>gnl|CDD|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional.
Length = 457
Score = 25.1 bits (55), Expect = 8.1
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 1 MTRSTS-TALQAIFLSLDATELVKT 24
M + + QAIF++ DA+ LV
Sbjct: 161 MQQYAAANTPQAIFIAFDASNLVSA 185
>gnl|CDD|205790 pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase
proteins are necessary for efficient DNA transposition.
This domain is a member of the DDE superfamily, which
contains three carboxylate residues that are believed to
be responsible for coordinating metal ions needed for
catalysis. The catalytic activity of this enzyme
involves DNA cleavage at a specific site followed by a
strand transfer reaction.
Length = 155
Score = 24.8 bits (55), Expect = 8.8
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 10 QAIFLSLDATELVKTFNYVHSDMKVPHERILEFPNILTSRRFRIENRHSYLKSL 63
Q +F L ++ + +MK ++ + + IL +R IE + LK++
Sbjct: 94 QELFERLFEQG-IQLITKLRKNMK--NKLMSLWDKILLRKRSIIETINDQLKNI 144
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.131 0.372
Gapped
Lambda K H
0.267 0.0875 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,108,568
Number of extensions: 411197
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 14
Length of query: 108
Length of database: 10,937,602
Length adjustment: 73
Effective length of query: 35
Effective length of database: 7,699,760
Effective search space: 269491600
Effective search space used: 269491600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (23.9 bits)