RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14468
         (108 letters)



>d1r4pa_ d.165.1.2 (A:) Shiga toxin, A-chain {Shigella dysenteriae,
           toxin II [TaxId: 622]}
          Length = 297

 Score = 24.9 bits (54), Expect = 2.4
 Identities = 4/17 (23%), Positives = 9/17 (52%)

Query: 92  NVAKTTPETYNLFLKSL 108
            +  +T ++Y   L S+
Sbjct: 4   TIDFSTQQSYVSSLNSI 20


>d1abra_ d.165.1.1 (A:) Abrin A-chain {Abrus precatorius [TaxId:
           3816]}
          Length = 251

 Score = 24.1 bits (52), Expect = 3.9
 Identities = 4/17 (23%), Positives = 10/17 (58%)

Query: 92  NVAKTTPETYNLFLKSL 108
           +    T ++Y  F+++L
Sbjct: 8   STEGATSQSYKQFIEAL 24


>d2q3na1 d.165.1.1 (A:2-248) Agglutinin-1 chain A {Abrus precatorius
           [TaxId: 3816]}
          Length = 247

 Score = 24.1 bits (52), Expect = 4.3
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 92  NVAKTTPETYNLFLKSL 108
                TP +YN F+ +L
Sbjct: 6   TTGSATPASYNQFIDAL 22


>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 330

 Score = 24.2 bits (52), Expect = 4.7
 Identities = 13/66 (19%), Positives = 27/66 (40%)

Query: 36  HERILEFPNILTSRRFRIENRHSYLKSLGRDQYDPCKENYVSMKSLVSGTDAEFCANVAK 95
            E +  F  + T +      +H+ +      QY+     + ++  L+   +A+   NV  
Sbjct: 240 KELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNLDKLIQLVNAQIRVNVLY 299

Query: 96  TTPETY 101
           +TP  Y
Sbjct: 300 STPACY 305


>d1nioa_ d.165.1.1 (A:) Beta-luffin {Smooth loofah (Luffa
           cylindrica) [TaxId: 3670]}
          Length = 247

 Score = 23.7 bits (51), Expect = 5.8
 Identities = 3/17 (17%), Positives = 11/17 (64%)

Query: 92  NVAKTTPETYNLFLKSL 108
           +++    ++Y+ F+ +L
Sbjct: 6   SLSGADSKSYSKFITAL 22


>d1r4qa_ d.165.1.2 (A:) Shiga toxin, A-chain {Shigella dysenteriae,
           toxin I [TaxId: 622]}
          Length = 289

 Score = 23.8 bits (51), Expect = 5.8
 Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 2/21 (9%)

Query: 88  EFCANVAKTTPETYNLFLKSL 108
           EF   +  +T +TY   L  +
Sbjct: 2   EF--TLDFSTAKTYVDSLNVI 20


>d1llna_ d.165.1.1 (A:) Antiviral protein 3 {Pokeweed (Phytolacca
           americana) [TaxId: 3527]}
          Length = 262

 Score = 23.8 bits (51), Expect = 6.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 92  NVAKTTPETYNLFLKSL 108
           +V   TPETY+ FL SL
Sbjct: 5   DVENATPETYSNFLTSL 21


>d1mrga_ d.165.1.1 (A:) alpha-Momorcharin (momordin) {Bitter gourd
           (Momordica charantia) [TaxId: 3673]}
          Length = 246

 Score = 23.7 bits (51), Expect = 6.3
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 92  NVAKTTPETYNLFLKSL 108
            ++   P +Y +F+K L
Sbjct: 5   RLSGADPRSYGMFIKDL 21


>d1uq5a_ d.165.1.1 (A:) Ricin A-chain {Castor bean (Ricinus
           communis) [TaxId: 3988]}
          Length = 263

 Score = 23.4 bits (50), Expect = 7.2
 Identities = 4/17 (23%), Positives = 10/17 (58%)

Query: 92  NVAKTTPETYNLFLKSL 108
             A  T ++Y  F++++
Sbjct: 8   TTAGATVQSYTNFIRAV 24


>d1rl0a_ d.165.1.1 (A:) Dianthin 30 {Clove pink (Dianthus
           caryophyllus) [TaxId: 3570]}
          Length = 255

 Score = 23.4 bits (50), Expect = 7.2
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 92  NVAKTTPETYNLFLKSL 108
           N+A  +   Y+ FL  +
Sbjct: 7   NLANPSASQYSSFLDQI 23


>d1cf5a_ d.165.1.1 (A:) Beta-momorcharin {Bitter gourd (Momordica
           charantia) [TaxId: 3673]}
          Length = 249

 Score = 23.3 bits (50), Expect = 7.3
 Identities = 4/17 (23%), Positives = 10/17 (58%)

Query: 92  NVAKTTPETYNLFLKSL 108
           +++  T +TY  F++  
Sbjct: 5   DLSTATAKTYTKFIEDF 21


>d1mrja_ d.165.1.1 (A:) alpha-Trichosanthin {Mongolian snake gourd
           (Trichosanthes kirilowii Maxim.) [TaxId: 3677]}
          Length = 247

 Score = 23.3 bits (50), Expect = 7.4
 Identities = 4/17 (23%), Positives = 10/17 (58%)

Query: 92  NVAKTTPETYNLFLKSL 108
            ++  T  +Y +F+ +L
Sbjct: 5   RLSGATSSSYGVFISNL 21


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 357,134
Number of extensions: 14447
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 22
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)