Query psy14469
Match_columns 482
No_of_seqs 216 out of 241
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 20:38:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2417|consensus 100.0 7.7E-99 2E-103 755.7 20.7 348 69-431 90-446 (462)
2 PF12430 ABA_GPCR: Abscisic ac 100.0 5.4E-45 1.2E-49 348.0 15.5 166 264-431 1-187 (196)
3 KOG2417|consensus 99.9 7.4E-28 1.6E-32 243.5 4.9 81 4-84 104-184 (462)
4 PF12537 DUF3735: Protein of u 99.9 1.1E-24 2.4E-29 177.7 3.9 71 129-199 1-72 (72)
5 PF12537 DUF3735: Protein of u 99.5 8.5E-15 1.8E-19 119.7 0.4 45 40-84 1-45 (72)
6 PF12430 ABA_GPCR: Abscisic ac 97.1 0.00031 6.6E-09 67.9 2.8 67 416-482 15-108 (196)
7 PF04791 LMBR1: LMBR1-like mem 92.6 3.7 8.1E-05 44.0 15.5 32 137-168 161-192 (471)
8 PRK11546 zraP zinc resistance 91.7 1.1 2.4E-05 41.8 8.7 35 229-266 85-119 (143)
9 KOG0709|consensus 66.5 14 0.00029 40.6 6.3 53 234-286 287-339 (472)
10 KOG3231|consensus 64.0 44 0.00096 32.3 8.5 66 167-265 3-73 (208)
11 PF05082 Rop-like: Rop-like; 59.8 17 0.00037 29.9 4.3 52 233-293 2-53 (66)
12 PRK10803 tol-pal system protei 51.6 58 0.0013 33.0 7.7 28 234-261 76-103 (263)
13 PF08317 Spc7: Spc7 kinetochor 46.5 1.5E+02 0.0032 30.9 9.9 23 177-199 211-233 (325)
14 COG3074 Uncharacterized protei 42.8 60 0.0013 27.2 5.0 49 233-281 18-74 (79)
15 PF14389 Lzipper-MIP1: Leucine 41.7 1.4E+02 0.003 25.5 7.3 26 231-256 59-84 (88)
16 PF04156 IncA: IncA protein; 41.6 1.6E+02 0.0034 27.7 8.6 26 176-201 82-107 (191)
17 KOG2577|consensus 37.9 67 0.0015 34.3 5.8 37 232-268 143-179 (354)
18 PF06005 DUF904: Protein of un 35.7 1.2E+02 0.0026 25.2 5.8 50 232-281 17-67 (72)
19 TIGR03042 PS_II_psbQ_bact phot 35.2 2.7E+02 0.0059 26.1 8.7 81 172-266 30-118 (142)
20 KOG0250|consensus 32.7 1.6E+02 0.0034 35.9 8.2 47 232-278 400-447 (1074)
21 PRK15422 septal ring assembly 32.2 1.3E+02 0.0029 25.6 5.6 28 232-259 17-44 (79)
22 PRK10884 SH3 domain-containing 32.2 3.6E+02 0.0078 26.6 9.5 23 239-261 131-153 (206)
23 PRK11637 AmiB activator; Provi 32.1 3.1E+02 0.0067 29.4 9.9 28 174-201 46-73 (428)
24 KOG1691|consensus 31.8 1.2E+02 0.0026 30.2 6.1 38 232-269 133-170 (210)
25 PF10805 DUF2730: Protein of u 31.7 3E+02 0.0066 24.1 8.1 27 170-203 30-56 (106)
26 COG3883 Uncharacterized protei 31.7 4.3E+02 0.0094 27.3 10.2 19 298-316 121-139 (265)
27 PF11932 DUF3450: Protein of u 31.4 4.3E+02 0.0093 26.2 10.2 37 232-268 83-119 (251)
28 KOG2019|consensus 30.9 1.7E+02 0.0037 34.4 7.8 43 152-194 354-405 (998)
29 PRK15422 septal ring assembly 28.2 3.8E+02 0.0083 22.9 8.8 26 177-202 6-31 (79)
30 PRK11637 AmiB activator; Provi 28.1 6E+02 0.013 27.3 11.2 14 234-247 97-110 (428)
31 PF01486 K-box: K-box region; 27.9 2.8E+02 0.006 23.7 7.1 26 173-198 47-72 (100)
32 PRK10803 tol-pal system protei 27.6 4.3E+02 0.0094 26.7 9.5 33 233-265 61-93 (263)
33 PF07798 DUF1640: Protein of u 27.5 5.3E+02 0.012 24.4 9.7 25 245-269 129-153 (177)
34 PRK11020 hypothetical protein; 27.2 3.7E+02 0.0081 24.5 7.8 15 233-247 38-52 (118)
35 PF14077 WD40_alt: Alternative 25.9 81 0.0018 24.3 2.9 23 232-254 17-39 (48)
36 PF14276 DUF4363: Domain of un 25.4 4.6E+02 0.01 22.9 8.5 37 232-268 71-112 (121)
37 PF04111 APG6: Autophagy prote 25.3 4.6E+02 0.01 27.3 9.5 32 233-264 78-109 (314)
38 PF00170 bZIP_1: bZIP transcri 25.3 2E+02 0.0044 22.5 5.4 33 233-265 26-58 (64)
39 PF05377 FlaC_arch: Flagella a 25.2 2E+02 0.0043 23.0 5.1 33 235-267 2-34 (55)
40 COG1579 Zn-ribbon protein, pos 24.9 5.9E+02 0.013 25.9 9.8 38 231-268 87-124 (239)
41 PF15117 UPF0697: Uncharacteri 24.6 56 0.0012 28.4 2.1 46 372-417 14-64 (99)
42 PF07106 TBPIP: Tat binding pr 23.8 5E+02 0.011 24.1 8.6 16 232-247 115-130 (169)
43 PF13801 Metal_resist: Heavy-m 23.8 4.2E+02 0.0092 21.9 7.9 28 171-198 41-68 (125)
44 PF08232 Striatin: Striatin fa 23.5 1.8E+02 0.0039 26.6 5.4 43 232-274 31-75 (134)
45 PF07889 DUF1664: Protein of u 23.0 5.8E+02 0.013 23.4 8.5 22 177-198 45-66 (126)
46 PF05600 DUF773: Protein of un 22.5 2.4E+02 0.0053 31.5 7.2 48 233-281 460-507 (507)
47 PRK09039 hypothetical protein; 22.4 5.1E+02 0.011 27.3 9.2 30 233-262 137-166 (343)
48 PF06166 DUF979: Protein of un 22.4 1.7E+02 0.0036 30.8 5.4 44 101-160 28-71 (308)
49 PF14362 DUF4407: Domain of un 22.3 4.5E+02 0.0098 26.7 8.6 37 234-270 136-172 (301)
50 smart00787 Spc7 Spc7 kinetocho 22.3 6.2E+02 0.013 26.5 9.7 26 176-201 205-230 (312)
51 KOG0971|consensus 22.0 5.5E+02 0.012 31.2 9.8 38 234-271 1093-1130(1243)
52 TIGR00985 3a0801s04tom mitocho 21.9 49 0.0011 31.2 1.4 31 270-310 6-36 (148)
53 PF00846 Hanta_nucleocap: Hant 21.8 4.7E+02 0.01 28.6 8.7 35 176-210 3-38 (428)
54 PHA00327 minor capsid protein 21.8 3.7E+02 0.0081 26.1 7.1 13 255-267 123-135 (187)
55 COG3817 Predicted membrane pro 21.8 93 0.002 32.1 3.4 48 8-71 28-75 (313)
56 PF11932 DUF3450: Protein of u 21.7 8E+02 0.017 24.3 10.2 10 144-153 7-16 (251)
57 TIGR02231 conserved hypothetic 21.5 4.9E+02 0.011 28.7 9.3 36 233-268 138-173 (525)
58 PF13314 DUF4083: Domain of un 21.5 78 0.0017 25.5 2.2 47 135-192 4-56 (58)
59 TIGR03545 conserved hypothetic 21.5 2.3E+02 0.0049 32.1 6.7 24 175-198 164-187 (555)
60 COG3817 Predicted membrane pro 21.3 1.8E+02 0.0038 30.2 5.2 43 102-160 33-75 (313)
61 KOG4657|consensus 21.1 7.5E+02 0.016 25.2 9.4 30 232-261 92-121 (246)
62 PF10779 XhlA: Haemolysin XhlA 20.3 3.7E+02 0.008 21.7 6.1 40 237-276 17-56 (71)
No 1
>KOG2417|consensus
Probab=100.00 E-value=7.7e-99 Score=755.68 Aligned_cols=348 Identities=46% Similarity=0.806 Sum_probs=320.7
Q ss_pred cccccceeeeeeecccccCCCCCCCCCCccchhHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhhheeehhhHHH
Q psy14469 69 VNYPYTSMFYFIRKGHLDNMGPRSSRVPNNMIRPMAVTIWLTYIYLFWKLGDPFPILSAKQGFLSIEQGISRIGVIGVTV 148 (482)
Q Consensus 69 v~~p~~~~~lf~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~FwklG~~~P~~~~~~g~~s~e~~lsRIgViGVTl 148 (482)
+..||.++-+.+|... +++++++++++.+|.+|+|+|||+|||||+++|+||+||+||.++||||||||+
T Consensus 90 ~~ip~Y~~y~ii~~i~----------v~~k~~~~~s~l~w~~FlYffWkiGdpFPmlSakhGiftieQliSRvgVIGVTl 159 (462)
T KOG2417|consen 90 FMIPYYHCYLIIRNIG----------VRRKLALPFTILFWFIFLYFFWKIGDPFPMLSAKHGIFTIEQLISRVGVIGVTL 159 (462)
T ss_pred HHHHHHhheeeeeccc----------chHHHHhHHHHHHHHHHHHHHHHhCCCCCCCCcccceeeHHHHHhhhhhhhhhH
Confidence 6789888888888654 345667899999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh--ccCCCccchhhh---ccccc
Q psy14469 149 MALLSGFGAVNYPYTSMFYFIRPVTSTDVYSIQKRLMQTLEMIVAKKKRIAVAK--KM--NSNTSQSQAYTQ---ALWGM 221 (482)
Q Consensus 149 MAiLSGfGAVstPY~~~~~f~R~Vte~DI~~~er~L~~T~d~l~~KK~rl~~~q--~~--~~~~~~~~~~~~---~l~~~ 221 (482)
||+||||||||+||+||++|.|||+|.||.++||||.||+||+.+||||++.+| +. +.++.++ +++ ++|++
T Consensus 160 MAvLSGFGAVN~PYsyms~FiR~Vee~di~~lErrL~qtmdmiisKKkk~a~~~l~~~~l~~e~~~k--~pSff~r~w~~ 237 (462)
T KOG2417|consen 160 MAVLSGFGAVNAPYSYMSYFIRPVEETDIIQLERRLAQTMDMIISKKKKMAMAQLEEKRLQSEKVQK--EPSFFRRFWGM 237 (462)
T ss_pred HHHHhccCccCCchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhccc--CCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999877 32 2222222 234 78999
Q ss_pred cccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhHHhhhhhhhhhhhHHHHHHHHHHhhc
Q psy14469 222 LKNVTTYSRSSENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQWSKTWKGKYFNVLGYFFSLYCIWKILICTINIVF 301 (482)
Q Consensus 222 l~s~~~~~~~~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~SrT~kGr~~n~lGy~FSIYCVYKI~~s~iniif 301 (482)
+.+..+.++.+++|+.+|+|+++||+++||||+|+.||+++++|.++|||++|+++|++||+||+||||||+++++|++|
T Consensus 238 ~~~~~~~~~~~~~i~~lq~EV~~LEeLsrqLFLE~~eLr~~ker~~~SkTfkG~yfN~LG~ffSiYCvwKif~s~inIvF 317 (462)
T KOG2417|consen 238 FSSSVQDNTLSSDIKLLQQEVEPLEELSRQLFLELVELRQMKERVAFSKTFKGKYFNVLGHFFSIYCVWKIFMSLINIVF 317 (462)
T ss_pred HHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhhhHhHHHHHHHHHHHHHHHHh
Confidence 88766666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccc--chhHHHHHHHhHHH
Q psy14469 302 DRVGKKDPVTRGIEILVHWVELDIDVVFWSQHISFLLVGCIVLTSIRGLLLTLTKVRTLDPIEL--DIDVVFWSQHISFL 379 (482)
Q Consensus 302 ~r~~~sDPItr~L~ill~~~~~~iDv~~wSqqISflLsG~LivtSiRgvL~Tl~kff~~~p~~~--~~svLl~sel~GvY 379 (482)
||+|++||+||.+++.++|+|++.|++.|||||||+|+|+|+++|+||+|.|++||+...+++. +..+++++|.||+|
T Consensus 318 drvGk~DPVTr~IeI~v~~~gi~~Dv~fwsQyISf~lVG~i~vtSvRGll~tltkf~y~~~~s~ssn~ivl~l~qimgmy 397 (462)
T KOG2417|consen 318 DRVGKVDPVTRGIEITVNYLGIDFDVSFWSQYISFFLVGVIAVTSVRGLLITLTKFFYSISSSKSSNIIVLFLAQIMGMY 397 (462)
T ss_pred hhccCcCCccceeEEEEEEecccchHHHHHHHHHHHhhheeEEeehhhhhhhhhhhhheecccccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887776554 45589999999999
Q ss_pred HHHHHHHHHhhccccccccccccCCCCCceeeeehhhhHHHHHHHHHHHHHH
Q psy14469 380 LVGCIVLTSIRGLLLTLTKVRTLDPIELDIDVVFWSQHISFLLVGCIVLTSI 431 (482)
Q Consensus 380 fIstillt~ir~~L~~~~~~~~~~~~~~~~e~~f~~~~~~~~~~~~~~~~~~ 431 (482)
|+|++++ ||-++|.|||-++++++| |+++||||||||.||++|++.+.+
T Consensus 398 f~ssvll--irms~p~Eyr~iit~VlG-dlqfnfyhRwfdviFl~Sa~~si~ 446 (462)
T KOG2417|consen 398 FVSSVLL--IRMSMPAEYRTIITEVLG-DLQFNFYHRWFDVIFLVSALSSIL 446 (462)
T ss_pred HHHHHHH--HhhcChHHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999997 999999999999999999876643
No 2
>PF12430 ABA_GPCR: Abscisic acid G-protein coupled receptor
Probab=100.00 E-value=5.4e-45 Score=348.02 Aligned_cols=166 Identities=34% Similarity=0.616 Sum_probs=159.3
Q ss_pred HHHhhcCchhhhHHhhhhhhhhhhhHHHHHHHHHHhhccc---------------CCCCCchhHHHHHHHHHccccccHH
Q psy14469 264 EKIQWSKTWKGKYFNVLGYFFSLYCIWKILICTINIVFDR---------------VGKKDPVTRGIEILVHWVELDIDVV 328 (482)
Q Consensus 264 ~r~~~SrT~kGr~~n~lGy~FSIYCVYKI~~s~iniif~r---------------~~~sDPItr~L~ill~~~~~~iDv~ 328 (482)
||+++++|++||++|++||+|++||+|||++|++|+++.+ .+++||+|++++++++++++++|++
T Consensus 1 ~r~~~s~T~~G~~~~~~g~~fsiYCvyki~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~Dpit~~l~~~~~~~~~~~d~~ 80 (196)
T PF12430_consen 1 ERQKRSSTLLGRLFNLLGYIFSIYCVYKIINTTLNIIFRRYSYSSSSPDDSSEASFSSSDPITRTLAILLSFFNIPIDVD 80 (196)
T ss_pred ChhhhCccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCHHHHHHHHHHHhCCCCCCHH
Confidence 5789999999999999999999999999999999999977 8899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccccc----hhHHHHHHHhHHHHHHHHHHHHhhccccccccccccCC
Q psy14469 329 FWSQHISFLLVGCIVLTSIRGLLLTLTKVRTLDPIELD----IDVVFWSQHISFLLVGCIVLTSIRGLLLTLTKVRTLDP 404 (482)
Q Consensus 329 ~wSqqISflLsG~LivtSiRgvL~Tl~kff~~~p~~~~----~svLl~sel~GvYfIstillt~ir~~L~~~~~~~~~~~ 404 (482)
+|+|||||+|+|+|++||+|+|++|++++++++|+..+ ..+|+++|+||+||+||+++ +|+|||.+++-..++.
T Consensus 81 ~~s~~ISf~L~g~l~~~S~r~vl~t~~~~~~~~~~~~~~~~~~~~L~laelmGiY~iSt~lL--lRsnLP~~~~~~i~~~ 158 (196)
T PF12430_consen 81 SWSRQISFLLSGVLFVTSIRGVLTTFSKFFRALPSSLSLSSNILVLFLAELMGIYFISTVLL--LRSNLPPEYSSIITEI 158 (196)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHH--HhccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999998763 44899999999999999999 9999999999999999
Q ss_pred CC--CceeeeehhhhHHHHHHHHHHHHHH
Q psy14469 405 IE--LDIDVVFWSQHISFLLVGCIVLTSI 431 (482)
Q Consensus 405 ~~--~~~e~~f~~~~~~~~~~~~~~~~~~ 431 (482)
+| .+.|++|||+|||.+|+.||++|.+
T Consensus 159 Lg~~~~~~~~~~~~wFD~iFl~S~~~T~~ 187 (196)
T PF12430_consen 159 LGENSLLEFNFYDRWFDKIFLISAILTAV 187 (196)
T ss_pred HccccCCCchHHHHHHHHHHHHHHHHHHH
Confidence 98 9999999999999999999999976
No 3
>KOG2417|consensus
Probab=99.94 E-value=7.4e-28 Score=243.55 Aligned_cols=81 Identities=56% Similarity=1.069 Sum_probs=78.5
Q ss_pred CCCCccchhHHHHHHHHHHHHHHhhcCCCCccccccccchhhhhhhhhhhhhHHHHHHHhhcccccccccceeeeeeecc
Q psy14469 4 HKIPNNMIRPMAVTIWLTYIYLFWKLGDPFPILSAKQGFLSIEQGISRIGVIGVTVMALLSGFGAVNYPYTSMFYFIRKG 83 (482)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~fw~~g~~~p~~~~~~~~~~~~~~~~r~gvigv~~ma~lsGf~av~~p~~~~~lf~r~~ 83 (482)
.++++++..++++..|.+|+|+|||+|||||+++|+||+||+||.+|||||||||+||+||||||||+||+||++|+|+.
T Consensus 104 i~v~~k~~~~~s~l~w~~FlYffWkiGdpFPmlSakhGiftieQliSRvgVIGVTlMAvLSGFGAVN~PYsyms~FiR~V 183 (462)
T KOG2417|consen 104 IGVRRKLALPFTILFWFIFLYFFWKIGDPFPMLSAKHGIFTIEQLISRVGVIGVTLMAVLSGFGAVNAPYSYMSYFIRPV 183 (462)
T ss_pred ccchHHHHhHHHHHHHHHHHHHHHHhCCCCCCCCcccceeeHHHHHhhhhhhhhhHHHHHhccCccCCchhhhhhhhccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred c
Q psy14469 84 H 84 (482)
Q Consensus 84 ~ 84 (482)
-
T Consensus 184 e 184 (462)
T KOG2417|consen 184 E 184 (462)
T ss_pred c
Confidence 4
No 4
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=99.90 E-value=1.1e-24 Score=177.73 Aligned_cols=71 Identities=56% Similarity=0.925 Sum_probs=68.4
Q ss_pred ccchhhhhhhheeehhhHHHHHHhhccccccccccccccccccCC-hhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 129 QGFLSIEQGISRIGVIGVTVMALLSGFGAVNYPYTSMFYFIRPVT-STDVYSIQKRLMQTLEMIVAKKKRIA 199 (482)
Q Consensus 129 ~g~~s~e~~lsRIgViGVTlMAiLSGfGAVstPY~~~~~f~R~Vt-e~DI~~~er~L~~T~d~l~~KK~rl~ 199 (482)
||++.+|++++||||+|||+||+|||||||||||++|++|.|+++ |.||+++|++++||.|++.+||+|++
T Consensus 1 ~~~~~~~~~l~ri~ViGVt~mAiLSG~gaVstpy~~~~~~~~~v~~~~~i~~~~~~l~~t~~~l~~Kk~~l~ 72 (72)
T PF12537_consen 1 HGFFYIENVLSRIGVIGVTLMAILSGFGAVSTPYYYFSYFRRPVSRESDINNAERRLWHTRDMLVEKKKRLA 72 (72)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHhhhhHHccHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 578889999999999999999999999999999999999999999 99999999999999999999999873
No 5
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=99.46 E-value=8.5e-15 Score=119.71 Aligned_cols=45 Identities=60% Similarity=0.933 Sum_probs=42.6
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHhhcccccccccceeeeeeeccc
Q psy14469 40 QGFLSIEQGISRIGVIGVTVMALLSGFGAVNYPYTSMFYFIRKGH 84 (482)
Q Consensus 40 ~~~~~~~~~~~r~gvigv~~ma~lsGf~av~~p~~~~~lf~r~~~ 84 (482)
||++.+|+|++||||+|||+||+|||||||++||+++.+|.|+..
T Consensus 1 ~~~~~~~~~l~ri~ViGVt~mAiLSG~gaVstpy~~~~~~~~~v~ 45 (72)
T PF12537_consen 1 HGFFYIENVLSRIGVIGVTLMAILSGFGAVSTPYYYFSYFRRPVS 45 (72)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHhhhhHHccHHHHHHHHHhcCC
Confidence 578889999999999999999999999999999999999998865
No 6
>PF12430 ABA_GPCR: Abscisic acid G-protein coupled receptor
Probab=97.10 E-value=0.00031 Score=67.88 Aligned_cols=67 Identities=36% Similarity=0.602 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhcc----------------ccccCce-----------eccceeeeeccchhhhhhhHH
Q psy14469 416 QHISFLLVGCIVLTSIRGLLLTLTK----------------VRTLDPI-----------ELDIDVVFWSQHISFLLVGCI 468 (482)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 468 (482)
+++.++|..=|+--.+-..+..+-+ ..+-||+ +.++|+-+|+|+|||+++||+
T Consensus 15 ~~~g~~fsiYCvyki~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~Dpit~~l~~~~~~~~~~~d~~~~s~~ISf~L~g~l 94 (196)
T PF12430_consen 15 NLLGYIFSIYCVYKIINTTLNIIFRRYSYSSSSPDDSSEASFSSSDPITRTLAILLSFFNIPIDVDSWSRQISFLLSGVL 94 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 5667777777766555444433322 4566775 457788899999999999999
Q ss_pred HhhhhhhhhhhhcC
Q psy14469 469 VLTSIRGLLLTLTR 482 (482)
Q Consensus 469 ~~~~~~~~~~~~~~ 482 (482)
+++|+||.+.|+++
T Consensus 95 ~~~S~r~vl~t~~~ 108 (196)
T PF12430_consen 95 FVTSIRGVLTTFSK 108 (196)
T ss_pred HHHhHHHHHHHHHH
Confidence 99999999998753
No 7
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=92.59 E-value=3.7 Score=44.04 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.5
Q ss_pred hhheeehhhHHHHHHhhccccccccccccccc
Q psy14469 137 GISRIGVIGVTVMALLSGFGAVNYPYTSMFYF 168 (482)
Q Consensus 137 ~lsRIgViGVTlMAiLSGfGAVstPY~~~~~f 168 (482)
+++-....|..++.++-|+|=|.-|-.....+
T Consensus 161 ~ial~~~~Gl~l~i~~~g~Glv~iP~~l~~~~ 192 (471)
T PF04791_consen 161 LIALSNFWGLFLFIILLGYGLVAIPRDLWRSS 192 (471)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHhc
Confidence 45556779999999999999999999876654
No 8
>PRK11546 zraP zinc resistance protein; Provisional
Probab=91.74 E-value=1.1 Score=41.83 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=25.5
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 229 SRSSENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKI 266 (482)
Q Consensus 229 ~~~~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~ 266 (482)
+++.+.|++|.+||..|.. +|+.+=.+++.+.++.
T Consensus 85 ~pD~~kI~aL~kEI~~Lr~---kL~e~r~~~~~~~~k~ 119 (143)
T PRK11546 85 PPDSSKINAVAKEMENLRQ---SLDELRVKRDIAMAEA 119 (143)
T ss_pred CCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHc
Confidence 3556779999999988877 7776666666666554
No 9
>KOG0709|consensus
Probab=66.47 E-value=14 Score=40.61 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhHHhhhhhhhhh
Q psy14469 234 NVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQWSKTWKGKYFNVLGYFFSL 286 (482)
Q Consensus 234 ~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~SrT~kGr~~n~lGy~FSI 286 (482)
+=++||+.|+.||.=.+.|+.+|..++........+.|=.|+...++.+-|+.
T Consensus 287 eNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an~s~qt~tC~av~~lS~~l 339 (472)
T KOG0709|consen 287 ENQELQKKVEELELSNRSLLAQLKKLQTLVIQVANKSTQTSTCLAVLLLSFCL 339 (472)
T ss_pred CcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHH
Confidence 44689999999999999999999999998888888778888888777765553
No 10
>KOG3231|consensus
Probab=64.01 E-value=44 Score=32.25 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=43.5
Q ss_pred cccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhhccccccccccccCccchhhHHHHHHHHHHH
Q psy14469 167 YFIRPVTSTDVYSIQKRLMQTLEMIVAKKKRIAVAKKMNSNTSQSQAYTQALWGMLKNVTTYSRSSENVWQLKQEVAGLE 246 (482)
Q Consensus 167 ~f~R~Vte~DI~~~er~L~~T~d~l~~KK~rl~~~q~~~~~~~~~~~~~~~l~~~l~s~~~~~~~~~~i~~Lq~EI~gLE 246 (482)
.|.+|-.+..++...|.|+.|...+...|+++. ++.++|++||..+-
T Consensus 3 iF~Kktvke~~ren~ReLRkt~RdierdRr~me---------------------------------~~Ek~LElEIkk~A 49 (208)
T KOG3231|consen 3 IFKKKTVKEVIRENNRELRKTQRDIERDRRAME---------------------------------KQEKQLELEIKKMA 49 (208)
T ss_pred cccCCCHHHHHHHhHHHHHHhHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHH
Confidence 455564445566667777777777776665442 23457788887776
Q ss_pred HH-----HHHHHHHHHHHHHHHHH
Q psy14469 247 EL-----SRQLYLEAHDTCNMMEK 265 (482)
Q Consensus 247 ~L-----~~~Lf~eL~eL~~~~~r 265 (482)
.. .+.|..+|+++|..+.|
T Consensus 50 a~GnndAcr~LAKQLV~lRkQKtr 73 (208)
T KOG3231|consen 50 AIGNNDACRVLAKQLVHLRKQKTR 73 (208)
T ss_pred HccCcHHHHHHHHHHHHHHHhhhh
Confidence 53 67788889888876543
No 11
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=59.80 E-value=17 Score=29.85 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhHHhhhhhhhhhhhHHHHH
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQWSKTWKGKYFNVLGYFFSLYCIWKIL 293 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~SrT~kGr~~n~lGy~FSIYCVYKI~ 293 (482)
+++..|+.||..|.....|+-.|||+|-.. +...+-+++...=..|-+|+=.
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEd---------LP~~w~~i~~vA~~ty~a~~~l 53 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAED---------LPTNWEEIPEVAQKTYDAYAEL 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------TTTTGGGHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------cchhHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999998652 3334445566655566655544
No 12
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=51.65 E-value=58 Score=32.98 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 234 NVWQLKQEVAGLEELSRQLYLEAHDTCN 261 (482)
Q Consensus 234 ~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~ 261 (482)
++.+++-|++.+.+=.+++|.|+.+..+
T Consensus 76 ~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 76 QIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566788888888888899999888654
No 13
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=46.54 E-value=1.5e+02 Score=30.88 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 177 VYSIQKRLMQTLEMIVAKKKRIA 199 (482)
Q Consensus 177 I~~~er~L~~T~d~l~~KK~rl~ 199 (482)
++.+.+.+......+.++|++++
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 14
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.84 E-value=60 Score=27.16 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hcCchhhhHHhhhh
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQ--------WSKTWKGKYFNVLG 281 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~--------~SrT~kGr~~n~lG 281 (482)
+-|.-||+||+.|++=.++|-.|..+++..++.-+ .-+.|.-|+-.++|
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999988989888887766443322 23455555555554
No 15
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=41.73 E-value=1.4e+02 Score=25.53 Aligned_cols=26 Identities=35% Similarity=0.332 Sum_probs=17.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Q psy14469 231 SSENVWQLKQEVAGLEELSRQLYLEA 256 (482)
Q Consensus 231 ~~~~i~~Lq~EI~gLE~L~~~Lf~eL 256 (482)
.-++|+.++.||.-||.==.+||.++
T Consensus 59 LL~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 59 LLEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888887444444444
No 16
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=41.60 E-value=1.6e+02 Score=27.71 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 176 DVYSIQKRLMQTLEMIVAKKKRIAVA 201 (482)
Q Consensus 176 DI~~~er~L~~T~d~l~~KK~rl~~~ 201 (482)
++...++++.+..+.+.+-.+++...
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~ 107 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQEL 107 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444444444433
No 17
>KOG2577|consensus
Probab=37.91 E-value=67 Score=34.32 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=25.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQW 268 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~ 268 (482)
.++.+.|++|++.|+.+++.|=.-+..+++..+..-.
T Consensus 143 ~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lte 179 (354)
T KOG2577|consen 143 PERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTE 179 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4778889999999998887665555555554444333
No 18
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=35.68 E-value=1.2e+02 Score=25.15 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=27.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCchhhhHHhhhh
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQW-SKTWKGKYFNVLG 281 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~-SrT~kGr~~n~lG 281 (482)
.+.|..||.|++.|+.=..++..+-.+|+..-++-+. -.-|..|+-.++|
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888877756665555555553222221 2334444444443
No 19
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=35.16 E-value=2.7e+02 Score=26.13 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=42.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCccchhhhccccccccccccC--ccchhh-----HHHHHHHH
Q psy14469 172 VTSTDVYSIQKRLMQTLEMIVAKKKRIAVAKK-MNSNTSQSQAYTQALWGMLKNVTTYS--RSSENV-----WQLKQEVA 243 (482)
Q Consensus 172 Vte~DI~~~er~L~~T~d~l~~KK~rl~~~q~-~~~~~~~~~~~~~~l~~~l~s~~~~~--~~~~~i-----~~Lq~EI~ 243 (482)
.++.|+.+.|++. +-+.+-|.|+.+++. ++.+ -|.-++.+-.++ ....++ +.+..|=.
T Consensus 30 ysp~~l~~i~~~~----~~i~~~~~r~~eLk~lI~kk----------~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk 95 (142)
T TIGR03042 30 YSPAQLAQIQRQA----EGIEAAKDRLPELASLVAKE----------DWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQK 95 (142)
T ss_pred CCHHHHHHHHHHH----HHHHHHHHhhHHHHHHHhhc----------chHHHHHHHhccHHHHHHHHHHHHHccCHHhHH
Confidence 3477888877776 345555667776665 2221 122222111110 000011 11234445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 244 GLEELSRQLYLEAHDTCNMMEKI 266 (482)
Q Consensus 244 gLE~L~~~Lf~eL~eL~~~~~r~ 266 (482)
.+.++.++||.++.+|...-+..
T Consensus 96 ~a~~L~~~Lf~~L~~LD~AA~~k 118 (142)
T TIGR03042 96 EALALAKELKDDLEKLDEAARLQ 118 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778899999999998854433
No 20
>KOG0250|consensus
Probab=32.71 E-value=1.6e+02 Score=35.85 Aligned_cols=47 Identities=26% Similarity=0.258 Sum_probs=36.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhhhHHh
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQWSK-TWKGKYFN 278 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~Sr-T~kGr~~n 278 (482)
..++++|++|++.+|+...+|-.|+.++++...+.+.-+ +.+|+...
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~ 447 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQ 447 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457899999999999999999999999998666655543 34455443
No 21
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.24 E-value=1.3e+02 Score=25.59 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=22.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYLEAHDT 259 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL 259 (482)
.+.|.-||+||+-|++=..++..|..++
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~~ 44 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999888888876663
No 22
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.18 E-value=3.6e+02 Score=26.62 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 239 KQEVAGLEELSRQLYLEAHDTCN 261 (482)
Q Consensus 239 q~EI~gLE~L~~~Lf~eL~eL~~ 261 (482)
+++++.|++=.++|-.|+.++++
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344333344444444443
No 23
>PRK11637 AmiB activator; Provisional
Probab=32.07 E-value=3.1e+02 Score=29.43 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 174 STDVYSIQKRLMQTLEMIVAKKKRIAVA 201 (482)
Q Consensus 174 e~DI~~~er~L~~T~d~l~~KK~rl~~~ 201 (482)
+.++.+.++++....+.+.+.++++..+
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~ 73 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASL 73 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555555444444433
No 24
>KOG1691|consensus
Probab=31.84 E-value=1.2e+02 Score=30.19 Aligned_cols=38 Identities=21% Similarity=0.171 Sum_probs=34.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQWS 269 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~S 269 (482)
.+++.-++.|+..||.+..++-.|+.-|++|.++-+.-
T Consensus 133 keklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~ 170 (210)
T KOG1691|consen 133 KEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNT 170 (210)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56888999999999999999999999999998888773
No 25
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=31.67 E-value=3e+02 Score=24.11 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=17.5
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 170 RPVTSTDVYSIQKRLMQTLEMIVAKKKRIAVAKK 203 (482)
Q Consensus 170 R~Vte~DI~~~er~L~~T~d~l~~KK~rl~~~q~ 203 (482)
+.++.+|+...++++.+ ..+|+...|.
T Consensus 30 ~~a~~~~~~~l~~~~~~-------~~~Rl~~lE~ 56 (106)
T PF10805_consen 30 TYAKREDIEKLEERLDE-------HDRRLQALET 56 (106)
T ss_pred hhccHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 45677888888777654 3455666654
No 26
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.67 E-value=4.3e+02 Score=27.30 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=12.2
Q ss_pred HhhcccCCCCCchhHHHHH
Q psy14469 298 NIVFDRVGKKDPVTRGIEI 316 (482)
Q Consensus 298 niif~r~~~sDPItr~L~i 316 (482)
+++++..+=+|-|+|+-++
T Consensus 121 dvil~SkSfsD~IsRvtAi 139 (265)
T COG3883 121 DVILNSKSFSDLISRVTAI 139 (265)
T ss_pred HHHHccCcHHHHHHHHHHH
Confidence 5667666667777774433
No 27
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=31.45 E-value=4.3e+02 Score=26.24 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=27.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQW 268 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~ 268 (482)
.+++..|+.+++.++..++++.--+.+|....++.-.
T Consensus 83 ~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 83 EQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577788888888888888887777777777666443
No 28
>KOG2019|consensus
Probab=30.90 E-value=1.7e+02 Score=34.38 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=35.5
Q ss_pred hhccc---cccccccc------cccccccCChhhHHHHHHHHHHHHHHHHHH
Q psy14469 152 LSGFG---AVNYPYTS------MFYFIRPVTSTDVYSIQKRLMQTLEMIVAK 194 (482)
Q Consensus 152 LSGfG---AVstPY~~------~~~f~R~Vte~DI~~~er~L~~T~d~l~~K 194 (482)
=||.| +||+=|.- |+.=.+.|+|.||...|.-.+.|.+.++.+
T Consensus 354 ESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~ 405 (998)
T KOG2019|consen 354 ESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAET 405 (998)
T ss_pred HcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHh
Confidence 37888 78887764 444468999999999999999999998887
No 29
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=28.16 E-value=3.8e+02 Score=22.90 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 177 VYSIQKRLMQTLEMIVAKKKRIAVAK 202 (482)
Q Consensus 177 I~~~er~L~~T~d~l~~KK~rl~~~q 202 (482)
...+|.+..++.|.|.-=+-++.+++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELK 31 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999998877777777665
No 30
>PRK11637 AmiB activator; Provisional
Probab=28.09 E-value=6e+02 Score=27.28 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHHHH
Q psy14469 234 NVWQLKQEVAGLEE 247 (482)
Q Consensus 234 ~i~~Lq~EI~gLE~ 247 (482)
+++.++.||+.++.
T Consensus 97 ~i~~~~~ei~~l~~ 110 (428)
T PRK11637 97 TLNQLNKQIDELNA 110 (428)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 31
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.94 E-value=2.8e+02 Score=23.71 Aligned_cols=26 Identities=12% Similarity=0.376 Sum_probs=15.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 173 TSTDVYSIQKRLMQTLEMIVAKKKRI 198 (482)
Q Consensus 173 te~DI~~~er~L~~T~d~l~~KK~rl 198 (482)
+-.|+..+|+++..++.-+.++|.++
T Consensus 47 s~~eL~~LE~~Le~aL~~VR~rK~~~ 72 (100)
T PF01486_consen 47 SLKELQQLEQQLESALKRVRSRKDQL 72 (100)
T ss_pred chHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33566666666666666666655443
No 32
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.58 E-value=4.3e+02 Score=26.72 Aligned_cols=33 Identities=3% Similarity=0.089 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEK 265 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r 265 (482)
.++..||+||+.|.-.-.++-.|+.+++++++.
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 467888999998888777777788877775554
No 33
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=27.46 E-value=5.3e+02 Score=24.35 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14469 245 LEELSRQLYLEAHDTCNMMEKIQWS 269 (482)
Q Consensus 245 LE~L~~~Lf~eL~eL~~~~~r~~~S 269 (482)
+.++++.+-.|+.+|+.+.++.++.
T Consensus 129 i~e~~~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 129 IQELNNKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556668888899999998887774
No 34
>PRK11020 hypothetical protein; Provisional
Probab=27.25 E-value=3.7e+02 Score=24.50 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHHH
Q psy14469 233 ENVWQLKQEVAGLEE 247 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~ 247 (482)
.|+..|..||+.|..
T Consensus 38 ~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 38 KEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355566666666655
No 35
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=25.92 E-value=81 Score=24.32 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYL 254 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~ 254 (482)
.-..++|+.|+..|..+.+.||.
T Consensus 17 ~vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 17 RVRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eeeHHHHHHHHHHHHHHhHHHHh
Confidence 34678999999999999999985
No 36
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=25.37 E-value=4.6e+02 Score=22.91 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=22.6
Q ss_pred chhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhh
Q psy14469 232 SENVWQLKQEVAGLEEL-----SRQLYLEAHDTCNMMEKIQW 268 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L-----~~~Lf~eL~eL~~~~~r~~~ 268 (482)
.+++..+..++..|+.- +.....|+++++...+....
T Consensus 71 h~eid~i~~sl~rl~~~i~~~dk~~~l~el~~lk~~i~~i~~ 112 (121)
T PF14276_consen 71 HQEIDNIDISLARLKGYIEAKDKSESLAELAELKELIEHIPE 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777763 23445566666665544433
No 37
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.34 E-value=4.6e+02 Score=27.33 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNMME 264 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~ 264 (482)
+++..++.|.+.|+..+.+.+.+.++++.+..
T Consensus 78 ~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~ 109 (314)
T PF04111_consen 78 QELEELEEELEELDEEEEEYWREYNELQLELI 109 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777666666655433
No 38
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=25.28 E-value=2e+02 Score=22.51 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEK 265 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r 265 (482)
..+..|+.++..|+....+|-.++..|....++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888777777777777776554
No 39
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.16 E-value=2e+02 Score=22.95 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14469 235 VWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQ 267 (482)
Q Consensus 235 i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~ 267 (482)
+..++.|+..++..=.++-.|..+++...++.+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666655555555555555555554444
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.94 E-value=5.9e+02 Score=25.87 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=26.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14469 231 SSENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQW 268 (482)
Q Consensus 231 ~~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~ 268 (482)
+..+.++|+.|+..++.=.+++-.|+.++..+++..+-
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777777776555443
No 41
>PF15117 UPF0697: Uncharacterised protein family UPF0697
Probab=24.59 E-value=56 Score=28.35 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=36.3
Q ss_pred HHHHhHHH----HHHHHHHHHhhccccccccccccCCC-CCceeeeehhhh
Q psy14469 372 WSQHISFL----LVGCIVLTSIRGLLLTLTKVRTLDPI-ELDIDVVFWSQH 417 (482)
Q Consensus 372 ~sel~GvY----fIstillt~ir~~L~~~~~~~~~~~~-~~~~e~~f~~~~ 417 (482)
|-|..-+| ++|-.++.|-|.|=-.+-|+++++|. +..-|-+|||.-
T Consensus 14 WNEATNVYlivilvS~~l~~YarrNKrkImRifs~ppt~~~~~epnfyd~~ 64 (99)
T PF15117_consen 14 WNEATNVYLIVILVSFGLFMYARRNKRKIMRIFSVPPTAETLTEPNFYDSM 64 (99)
T ss_pred HhhhccEEeehhHHhhHHHHhhhhcCceEEEEEecCCCCCCCCCCcHHHHH
Confidence 44444444 45667788899999999999999888 888899999964
No 42
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.80 E-value=5e+02 Score=24.14 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=11.0
Q ss_pred chhhHHHHHHHHHHHH
Q psy14469 232 SENVWQLKQEVAGLEE 247 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~ 247 (482)
.+++.+|++|++.|++
T Consensus 115 ~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 115 REEIEELEEEIEELEE 130 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777777777766
No 43
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=23.76 E-value=4.2e+02 Score=21.91 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=14.7
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 171 PVTSTDVYSIQKRLMQTLEMIVAKKKRI 198 (482)
Q Consensus 171 ~Vte~DI~~~er~L~~T~d~l~~KK~rl 198 (482)
..|+++-...++-.....+....-+.++
T Consensus 41 ~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~ 68 (125)
T PF13801_consen 41 NLTPEQQAKLRALMDEFRQEMRALRQEL 68 (125)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677666666665555554444444443
No 44
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=23.52 E-value=1.8e+02 Score=26.64 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=33.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcCchhh
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYLEAHDTCN--MMEKIQWSKTWKG 274 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~--~~~r~~~SrT~kG 274 (482)
...|+.||-|..++|.+...|-.-+..|.. +++|.++.+...|
T Consensus 31 karIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~ 75 (134)
T PF08232_consen 31 KARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYG 75 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 357999999999999999999988888877 5666666554443
No 45
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.98 E-value=5.8e+02 Score=23.43 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14469 177 VYSIQKRLMQTLEMIVAKKKRI 198 (482)
Q Consensus 177 I~~~er~L~~T~d~l~~KK~rl 198 (482)
.+..-++|+|..+-+.+-|+++
T Consensus 45 ~~~v~kql~~vs~~l~~tKkhL 66 (126)
T PF07889_consen 45 VASVSKQLEQVSESLSSTKKHL 66 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777776666554
No 46
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=22.55 E-value=2.4e+02 Score=31.46 Aligned_cols=48 Identities=25% Similarity=0.297 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhHHhhhh
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQWSKTWKGKYFNVLG 281 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~SrT~kGr~~n~lG 281 (482)
++..+++.|+..++.--..+-....+|+...++.- |+-.+||-.|+.|
T Consensus 460 ~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~I-Sk~y~gR~VnimG 507 (507)
T PF05600_consen 460 EKRQEAQEEQQELEPKLDALVERTRELQKQIEADI-SKRYKGRPVNIMG 507 (507)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCeeeccC
Confidence 45556677777777666666666666666555543 4447888877765
No 47
>PRK09039 hypothetical protein; Validated
Probab=22.36 E-value=5.1e+02 Score=27.33 Aligned_cols=30 Identities=20% Similarity=0.117 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNM 262 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~ 262 (482)
.++..|++||++|+.--.++-.+|.+.+.+
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666665555555555555544443
No 48
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=22.36 E-value=1.7e+02 Score=30.80 Aligned_cols=44 Identities=41% Similarity=0.628 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhhheeehhhHHHHHHhhccccccc
Q psy14469 101 RPMAVTIWLTYIYLFWKLGDPFPILSAKQGFLSIEQGISRIGVIGVTVMALLSGFGAVNY 160 (482)
Q Consensus 101 ~~l~~~~~~~~L~~FwklG~~~P~~~~~~g~~s~e~~lsRIgViGVTlMAiLSGfGAVst 160 (482)
+..+.+.|..+=..|. .|+..|... +| +-|.+|++|+|++-|..
T Consensus 28 R~gt~lFW~llg~~F~-~G~~lp~~~--------------~G-~lvl~m~~la~~~~v~~ 71 (308)
T PF06166_consen 28 RIGTALFWGLLGLIFI-FGDYLPPFV--------------VG-ILVLVMALLAGFGQVGI 71 (308)
T ss_pred ccchHHHHHHHHHHHH-cCccchhHH--------------HH-HHHHHHHHHHHcCCCCC
Confidence 4578999999888886 788887431 11 45788999999998863
No 49
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=22.31 E-value=4.5e+02 Score=26.65 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14469 234 NVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQWSK 270 (482)
Q Consensus 234 ~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~Sr 270 (482)
+++.+++|+++|+.=-+++..++.++++.........
T Consensus 136 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~ 172 (301)
T PF14362_consen 136 QIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGT 172 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4555556666666555555556666666655555544
No 50
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.30 E-value=6.2e+02 Score=26.51 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 176 DVYSIQKRLMQTLEMIVAKKKRIAVA 201 (482)
Q Consensus 176 DI~~~er~L~~T~d~l~~KK~rl~~~ 201 (482)
+..++..++......+..+|+++.+.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~ 230 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEEL 230 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 51
>KOG0971|consensus
Probab=22.04 E-value=5.5e+02 Score=31.20 Aligned_cols=38 Identities=13% Similarity=-0.042 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q psy14469 234 NVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQWSKT 271 (482)
Q Consensus 234 ~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~SrT 271 (482)
+---|.+||+.|..-.+|.-.|-.+|+...-|+.++.-
T Consensus 1093 ~~p~l~~qin~l~na~~qer~er~~Lkg~~mra~~aal 1130 (1243)
T KOG0971|consen 1093 DSPLLLQQINALRNAISQERHERSILKGAQMRASLAAL 1130 (1243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhcC
Confidence 44567788888888778888888888877777665443
No 52
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=21.91 E-value=49 Score=31.17 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=22.5
Q ss_pred CchhhhHHhhhhhhhhhhhHHHHHHHHHHhhcccCCCCCch
Q psy14469 270 KTWKGKYFNVLGYFFSLYCIWKILICTINIVFDRVGKKDPV 310 (482)
Q Consensus 270 rT~kGr~~n~lGy~FSIYCVYKI~~s~iniif~r~~~sDPI 310 (482)
+|..+-.....+-+|.-|||| ||+...+||-
T Consensus 6 ~~~~~~~ag~a~~~flgYciY----------FD~KRR~dPd 36 (148)
T TIGR00985 6 KSNVVIAAGIAAAAFLGYAIY----------FDYKRRNDPD 36 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----------hhhhhccCHH
Confidence 444444455677899999977 7888888885
No 53
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=21.83 E-value=4.7e+02 Score=28.62 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCc
Q psy14469 176 DVYSIQKRLMQTLEMIVAKKKRIAVAKK-MNSNTSQ 210 (482)
Q Consensus 176 DI~~~er~L~~T~d~l~~KK~rl~~~q~-~~~~~~~ 210 (482)
++..+|+.+.+.-..+..-|+++..+++ ++.+|++
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~ 38 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDD 38 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 3444455554444444444556766665 4545443
No 54
>PHA00327 minor capsid protein
Probab=21.81 E-value=3.7e+02 Score=26.06 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHh
Q psy14469 255 EAHDTCNMMEKIQ 267 (482)
Q Consensus 255 eL~eL~~~~~r~~ 267 (482)
|+..|++.-+..+
T Consensus 123 elQnL~~q~r~in 135 (187)
T PHA00327 123 ELQNLREQNRLIN 135 (187)
T ss_pred HHHHHHHHHHHhh
Confidence 4555555444444
No 55
>COG3817 Predicted membrane protein [Function unknown]
Probab=21.78 E-value=93 Score=32.15 Aligned_cols=48 Identities=33% Similarity=0.555 Sum_probs=32.9
Q ss_pred ccchhHHHHHHHHHHHHHHhhcCCCCccccccccchhhhhhhhhhhhhHHHHHHHhhccccccc
Q psy14469 8 NNMIRPMAVTIWLTYIYLFWKLGDPFPILSAKQGFLSIEQGISRIGVIGVTVMALLSGFGAVNY 71 (482)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~fw~~g~~~p~~~~~~~~~~~~~~~~r~gvigv~~ma~lsGf~av~~ 71 (482)
.+-++..+.+.|+.|-..|- .||.+|-. -+| ++|.+||++.|||-|-.
T Consensus 28 tnp~r~~t~~FW~l~~~tFl-~g~~lp~~--------------viG-~ivillAliagf~~v~~ 75 (313)
T COG3817 28 TNPVRFGTGLFWGLFSLTFL-GGDRLPNI--------------VIG-LIVILLALIAGFGQVKI 75 (313)
T ss_pred CCCceecchHHHHHHHHHHh-ccccccch--------------hHh-HHHHHHHHHHhcCCccc
Confidence 34456688889988877774 56777721 022 23569999999998754
No 56
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.68 E-value=8e+02 Score=24.33 Aligned_cols=10 Identities=20% Similarity=0.404 Sum_probs=4.3
Q ss_pred hhHHHHHHhh
Q psy14469 144 IGVTVMALLS 153 (482)
Q Consensus 144 iGVTlMAiLS 153 (482)
+++.+++.++
T Consensus 7 ~~~~~l~~~~ 16 (251)
T PF11932_consen 7 LGALLLASSA 16 (251)
T ss_pred HHHHHHHhhh
Confidence 3444444444
No 57
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.51 E-value=4.9e+02 Score=28.68 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQW 268 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~ 268 (482)
+++.++..++..++.-.+++-.++.+++++.++...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 466777777777777777777788887776655543
No 58
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=21.50 E-value=78 Score=25.46 Aligned_cols=47 Identities=30% Similarity=0.304 Sum_probs=28.7
Q ss_pred hhhhheeehhhHHHHHHhhccccccccccccccccc------cCChhhHHHHHHHHHHHHHHHH
Q psy14469 135 EQGISRIGVIGVTVMALLSGFGAVNYPYTSMFYFIR------PVTSTDVYSIQKRLMQTLEMIV 192 (482)
Q Consensus 135 e~~lsRIgViGVTlMAiLSGfGAVstPY~~~~~f~R------~Vte~DI~~~er~L~~T~d~l~ 192 (482)
++.+--++|+|..++...| |+.|.| +....|....|++|+.-.+++.
T Consensus 4 ~~~Iy~~~Vi~l~vl~~~~-----------Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 4 GDLIYYILVIILIVLFGAS-----------FTLFIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 3445556677777665544 333444 3455677788888887776653
No 59
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.49 E-value=2.3e+02 Score=32.13 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 175 TDVYSIQKRLMQTLEMIVAKKKRI 198 (482)
Q Consensus 175 ~DI~~~er~L~~T~d~l~~KK~rl 198 (482)
..++.+++.+....+.+.++++++
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~L 187 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDL 187 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666555665554443
No 60
>COG3817 Predicted membrane protein [Function unknown]
Probab=21.34 E-value=1.8e+02 Score=30.22 Aligned_cols=43 Identities=33% Similarity=0.553 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhhheeehhhHHHHHHhhccccccc
Q psy14469 102 PMAVTIWLTYIYLFWKLGDPFPILSAKQGFLSIEQGISRIGVIGVTVMALLSGFGAVNY 160 (482)
Q Consensus 102 ~l~~~~~~~~L~~FwklG~~~P~~~~~~g~~s~e~~lsRIgViGVTlMAiLSGfGAVst 160 (482)
..+.+.|..|=+.|- .||.+|... +| ++|.+||++.|||-|--
T Consensus 33 ~~t~~FW~l~~~tFl-~g~~lp~~v--------------iG-~ivillAliagf~~v~~ 75 (313)
T COG3817 33 FGTGLFWGLFSLTFL-GGDRLPNIV--------------IG-LIVILLALIAGFGQVKI 75 (313)
T ss_pred ecchHHHHHHHHHHh-ccccccchh--------------Hh-HHHHHHHHHHhcCCccc
Confidence 357888988888774 567666431 12 56889999999998863
No 61
>KOG4657|consensus
Probab=21.08 E-value=7.5e+02 Score=25.22 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=24.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYLEAHDTCN 261 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~ 261 (482)
.++++..|+|++.|+.+.+-+-.|+.+.+.
T Consensus 92 eqeik~~q~elEvl~~n~Q~lkeE~dd~ke 121 (246)
T KOG4657|consen 92 EQEIKATQSELEVLRRNLQLLKEEKDDSKE 121 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 467888999999999988888777776655
No 62
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.31 E-value=3.7e+02 Score=21.74 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhH
Q psy14469 237 QLKQEVAGLEELSRQLYLEAHDTCNMMEKIQWSKTWKGKY 276 (482)
Q Consensus 237 ~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~SrT~kGr~ 276 (482)
.++.+++.||.=....-.++..+..+.++.....+|.-|.
T Consensus 17 ~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~ 56 (71)
T PF10779_consen 17 NHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRT 56 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444445555666666666666665443
Done!